RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for YPEL5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039770

Ensembl transcript IDs: ENSMUST00000045174.7, ENSMUST00000233210.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTGCTAGGAGCATGAGCTCAGGAGCCTTCGGAGATCAGAGGTGTTaGATCCTGACTGGAGCTGGAGTTATAGGTGGTTTTGAGCAGACT +
Preference number: 1 (lower is better)
Translates to: GARSMSSGAFGDQRC*ILTGAGVIGGFEQT
Trigger: AGTCTGCTCAAAACCACCTATAACTCCAGCTCCAGTCAGGATCCAACACCTCTGATCTCCGAAGGCTCCTGAGCTCATGCTCCTAGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045174.7
3UTR CCA 90 bp CAACAAGCAATAGCTATTCAAAAGCATGCTGTTAGCTGGGTGTGGTaGTACAAACCTAAAATCTCAGCAGATGGGAGACAGGCAGAGATC +
Preference number: 1 (lower is better)
Translates to: QQAIAIQKHAVSWVW*YKPKISADGRQAEI
Trigger: GATCTCTGCCTGTCTCCCATCTGCTGAGATTTTAGGTTTGTACCACCACACCCAGCTAACAGCATGCTTTTGAATAGCTATTGCTTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045174.7
3UTR CCA 90 bp ACACAACAAGCAATAGCTATTCAAAAGCATGCTGTTAGCTGGGTGTaGTGGTACAAACCTAAAATCTCAGCAGATGGGAGACAGGCAGAG +
Preference number: 1 (lower is better)
Translates to: TQQAIAIQKHAVSWV*WYKPKISADGRQAE
Trigger: CTCTGCCTGTCTCCCATCTGCTGAGATTTTAGGTTTGTACCACCACACCCAGCTAACAGCATGCTTTTGAATAGCTATTGCTTGTTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045174.7
3UTR TCA 90 bp CTTTCCAATAGGGTGTGCTATCAGGTCCAGCTCAAATGCAATAGCTaGACTTCTAAGGAAAGATGTGAAATAATGACCCAAGCACAGACC +
Preference number: 1 (lower is better)
Translates to: LSNRVCYQVQLKCNS*TSKERCEIMTQAQT
Trigger: GGTCTGTGCTTGGGTCATTATTTCACATCTTTCCTTAGAAGTTCAGCTATTGCATTTGAGCTGGACCTGATAGCACACCCTATTGGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR GCA 90 bp CTGACTTCACTGCCCTGCCTAATTCACCAAAAGCAAGTATCAGTCTaGCTAGAAATAGCTTGGATAAAGAAGCATATTCTAACACTTTGT +
Preference number: 1 (lower is better)
Translates to: LTSLPCLIHQKQVSV*LEIAWIKKHILTLC
Trigger: ACAAAGTGTTAGAATATGCTTCTTTATCCAAGCTATTTCTAGGCAGACTGATACTTGCTTTTGGTGAATTAGGCAGGGCAGTGAAGTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR TCA 90 bp ACTTGTTCAACTCAGGCGATTTCCTTCACTTGGAAACTGAGCCTACAATACCCAACACCAAGTCCATGGTaGCAAGGAACTAGGGGTGGT +
Preference number: 2 (lower is better)
Translates to: TCSTQAISFTWKLSLQYPTPSPW*QGTRGG
Trigger: ACCACCCCTAGTTCCTTGTCACCATGGACTTGGTGT...TGGGTATTGTAGGCTCAGTTTCCAAGTGAAGGAAATCGCCTGAGTTGAACAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR CCA 90 bp AAATGCAGTATTATACTATCTCTGCTCAAGACAACCATGCCATTAACTGGGAGTCTGAGCCTCCAGCGCTaGGCACAGATTCGGATCTCT +
Preference number: 2 (lower is better)
Translates to: KCSIILSLLKTTMPLTGSLSLQR*AQIRIS
Trigger: AGAGATCCGAATCTGTGCCCAGCGCTGGAGGCTCAG...ACTCCCAGTTAATGGCATGGTTGTCTTGAGCAGAGATAGTATAATACTGCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR CAA 90 bp ATCCTGACTGGAGCTGGAGTTATAGGTGGTTTTGAGCAGACTGATTaGGGGGCAGGGAAGCGAGCTCCTAAACATATTATAAATAGGACA +
Preference number: 2 (lower is better)
Translates to: ILTGAGVIGGFEQTD*GAGKRAPKHIINRT
Trigger: TGTCCTATTTATAATATGTTTAGGAGCTCGCTTCCCTGCCCCCAAATCAGTCTGCTCAAAACCACCTATAACTCCAGCTCCAGTCAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045174.7
3UTR-3UTR GCA 90 bp AAATCAATGTCGGAAGTCAAATCTGGCCTCTTTCCAATAGGGTGTGCTATCAGGAGCCCACCATGTAGCTaGAAACTCTTCTGTCTCAAG +
Preference number: 2 (lower is better)
Translates to: KSMSEVKSGLFPIGCAIRSPPCS*KLFCLK
Trigger: CTTGAGACAGAAGAGTTTGCAGCTACATGGTGGGCT...CCTGATAGCACACCCTATTGGAAAGAGGCCAGATTTGACTTCCGACATTGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR CCA 90 bp GGGAGTGCAAAGCTAAGCATAAGCTTTACTAATCAGAAACCACTTTTAAAGTCACTGAGCCTCCAGCGCTaGGCACAGATTCGGATCTCT +
Preference number: 2 (lower is better)
Translates to: GSAKLSISFTNQKPLLKSLSLQR*AQIRIS
Trigger: AGAGATCCGAATCTGTGCCCAGCGCTGGAGGCTCAG...TGACTTTAAAAGTGGTTTCTGATTAGTAAAGCTTATGCTTAGCTTTGCACTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR CCA 90 bp CTATCTCTGCTCAAGACAACCATGCCATTAACTGGGAGTGCAAAGCTAAGCATAGTCGGAAGTCAAATCTaGCCTCTTTCCAATAGGGTG +
Preference number: 2 (lower is better)
Translates to: LSLLKTTMPLTGSAKLSIVGSQI*PLSNRV
Trigger: CACCCTATTGGAAAGAGGCCAGATTTGACTTCCGAC...TATGCTTAGCTTTGCACTCCCAGTTAATGGCATGGTTGTCTTGAGCAGAGATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR CCA 90 bp TTCACTTGTTCAACTCAGGCGATTTCCTTCACTTGGAAACTGAGCCTACAATACGTCGGAAGTCAAATCTaGCCTCTTTCCAATAGGGTG +
Preference number: 2 (lower is better)
Translates to: FTCSTQAISFTWKLSLQYVGSQI*PLSNRV
Trigger: CACCCTATTGGAAAGAGGCCAGATTTGACTTCCGAC...GTATTGTAGGCTCAGTTTCCAAGTGAAGGAAATCGCCTGAGTTGAACAAGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR GCA 90 bp ACGACAGAGTTGTGTTCACCCACTGGAAATGCAGTATTATACTATCTCTGCTCACTGACTTCACTGCCCTaGCTAATTCACCAAAAGCAA +
Preference number: 2 (lower is better)
Translates to: TTELCSPTGNAVLYYLCSLTSLP*LIHQKQ
Trigger: TTGCTTTTGGTGAATTAGGCAGGGCAGTGAAGTCAG...TGAGCAGAGATAGTATAATACTGCATTTCCAGTGGGTGAACACAACTCTGTCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR GCA 90 bp TTAACTGGGAGTGCAAAGCTAAGCATAAGCTTTACTAATCAGAAACCACTTTTAAGCCCACCATGTAGCTaGAAACTCTTCTGTCTCAAG +
Preference number: 2 (lower is better)
Translates to: LTGSAKLSISFTNQKPLLSPPCS*KLFCLK
Trigger: CTTGAGACAGAAGAGTTTGCAGCTACATGGTGGGCT...TAAAAGTGGTTTCTGATTAGTAAAGCTTATGCTTAGCTTTGCACTCCCAGTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR TCA 90 bp AAATGCAGTATTATACTATCTCTGCTCAAGACAACCATGCCATTAACTGGGAGTATCTGTTTATTTGTATaGCTAGCTGACTTCACTGCC +
Preference number: 2 (lower is better)
Translates to: KCSIILSLLKTTMPLTGSICLFV*LADFTA
Trigger: GGCAGTGAAGTCAGCTAGTCATACAAATAAACAGAT...ACTCCCAGTTAATGGCATGGTTGTCTTGAGCAGAGATAGTATAATACTGCATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR GCA 90 bp AGAAATCGGCACCACAGGCCAGTGCAGAAATCAGTGGAAATAAATAGTATCTTAGTATTATACTATCTCTaGTCAAGACAACCATGCCAT +
Preference number: 2 (lower is better)
Translates to: RNRHHRPVQKSVEINSILVLYYL*SRQPCH
Trigger: ATGGCATGGTTGTCTTGAGCAGAGATAGTATAATAC...TAAGATACTATTTATTTCCACTGATTTCTGCACTGGCCTGTGGTGCCGATTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR TCA 90 bp TTAACTGGGAGTGCAAAGCTAAGCATAAGCTTTACTAATCAGAAACCACTTTTAATCTGTTTATTTGTATaGCTAGCTGACTTCACTGCC +
Preference number: 2 (lower is better)
Translates to: LTGSAKLSISFTNQKPLLICLFV*LADFTA
Trigger: GGCAGTGAAGTCAGCTAGTCATACAAATAAACAGAT...TAAAAGTGGTTTCTGATTAGTAAAGCTTATGCTTAGCTTTGCACTCCCAGTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR TCA 90 bp TTAACTGGGAGTGCAAAGCTAAGCATAAGCTTTACTAATCAGAAACCACTTTTACTCAAATGCAATAGCTaGACTTCTAAGGAAAGATGT +
Preference number: 2 (lower is better)
Translates to: LTGSAKLSISFTNQKPLLLKCNS*TSKERC
Trigger: ACATCTTTCCTTAGAAGTTCAGCTATTGCATTTGAG...TAAAAGTGGTTTCTGATTAGTAAAGCTTATGCTTAGCTTTGCACTCCCAGTTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR CCA 72 bp AGCATGAGCTCAGGAGCCTTCGGAGATCAGAGGTGTTaGATCCTGACTGGAGCTGGAGTTATAGGTGGTTTT +
Preference number: 3 (lower is better)
Translates to: SMSSGAFGDQRC*ILTGAGVIGGF
Trigger: AAAACCACCTATAACTCCAGCTCCAGTCAGGATCCAACACCTCTGATCTCCGAAGGCTCCTGAGCTCATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045174.7
3UTR-3UTR CAA 90 bp CTCAGGAGCCTTCGGAGATCAGAGGTGTTGGATCCTGACTGGAGCTGGAGTTATGGCGATTTCCTTCACTaGGAAACTGAGCCTACAATA +
Preference number: 3 (lower is better)
Translates to: LRSLRRSEVLDPDWSWSYGDFLH*ETEPTI
Trigger: TATTGTAGGCTCAGTTTCCAAGTGAAGGAAATCGCC...ATAACTCCAGCTCCAGTCAGGATCCAACACCTCTGATCTCCGAAGGCTCCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045174.7
3UTR CCA 72 bp GCAATAGCTATTCAAAAGCATGCTGTTAGCTGGGTGTaGTGGTACAAACCTAAAATCTCAGCAGATGGGAGA +
Preference number: 3 (lower is better)
Translates to: AIAIQKHAVSWV*WYKPKISADGR
Trigger: TCTCCCATCTGCTGAGATTTTAGGTTTGTACCACCACACCCAGCTAACAGCATGCTTTTGAATAGCTATTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045174.7
3UTR-3UTR CAA 90 bp CTGCTCAAGACAACCATGCCATTAACTGGGAGTGCAAAGCTAAGCATAAGCTTTGACACAAAGTTTCACTaGTTCAACTCAGGCGATTTC +
Preference number: 3 (lower is better)
Translates to: LLKTTMPLTGSAKLSISFDTKFH*FNSGDF
Trigger: GAAATCGCCTGAGTTGAACAAGTGAAACTTTGTGTC...AAAGCTTATGCTTAGCTTTGCACTCCCAGTTAATGGCATGGTTGTCTTGAGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR TCA 72 bp GAAACTGAGCCTACAATACCCATCTGTTTATTTGTATaGCTAGCTGACTTCACTGCCCTGCCTAATTCACCA +
Preference number: 3 (lower is better)
Translates to: ETEPTIPICLFV*LADFTALPNSP
Trigger: TGGTGAATTAGGCAGGGCAGTGAAGTCAGCTAGTCATACAAATAAACAGATGGGTATTGTAGGCTCAGTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR GCA 72 bp CAAGTTGACGACAGAGTTGTGTTCACCCACTGGAAATaGAGTATTATACTATCTCTGCTCAAGACAACCATG +
Preference number: 3 (lower is better)
Translates to: QVDDRVVFTHWK*SIILSLLKTTM
Trigger: CATGGTTGTCTTGAGCAGAGATAGTATAATACTGCATTTCCAGTGGGTGAACACAACTCTGTCGTCAACTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR CAA 90 bp ACGACAGAGTTGTGTTCACCCACTGGAAATGCAGTATTATACTATCTCTGCTCAGTTAGTGCCACAGATTaGTCAAAATCAATTCACAGA +
Preference number: 3 (lower is better)
Translates to: TTELCSPTGNAVLYYLCSVSATD*SKSIHR
Trigger: TCTGTGAATTGATTTTGACAAATCTGTGGCACTAAC...TGAGCAGAGATAGTATAATACTGCATTTCCAGTGGGTGAACACAACTCTGTCGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR GCA 72 bp CTGCCCTGCCTAATTCACCAAAAGCAAGTATCAGTCTaGCTAGAAATAGCTTGGATAAAGAAGCATATTCTA +
Preference number: 3 (lower is better)
Translates to: LPCLIHQKQVSV*LEIAWIKKHIL
Trigger: TAGAATATGCTTCTTTATCCAAGCTATTTCTAGGCAGACTGATACTTGCTTTTGGTGAATTAGGCAGGGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR CCA 72 bp TTCATTCAAGTTGACGACAGAGTTGTGTTCACCCACTaGAAATGCAGTATTATACTATCTCTGCTCAAGACA +
Preference number: 3 (lower is better)
Translates to: FIQVDDRVVFTH*KCSIILSLLKT
Trigger: TGTCTTGAGCAGAGATAGTATAATACTGCATTTCCAGTGGGTGAACACAACTCTGTCGTCAACTTGAATGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR CAA 90 bp GGGAGTGCAAAGCTAAGCATAAGCTTTACTAATCAGAAACCACTTTTAAAGTCAGACACAAAGTTTCACTaGTTCAACTCAGGCGATTTC +
Preference number: 3 (lower is better)
Translates to: GSAKLSISFTNQKPLLKSDTKFH*FNSGDF
Trigger: GAAATCGCCTGAGTTGAACAAGTGAAACTTTGTGTC...TGACTTTAAAAGTGGTTTCTGATTAGTAAAGCTTATGCTTAGCTTTGCACTCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR-3UTR CAA 90 bp TTAACTGGGAGTGCAAAGCTAAGCATAAGCTTTACTAATCAGAAACCACTTTTAGTTAGTGCCACAGATTaGTCAAAATCAATTCACAGA +
Preference number: 3 (lower is better)
Translates to: LTGSAKLSISFTNQKPLLVSATD*SKSIHR
Trigger: TCTGTGAATTGATTTTGACAAATCTGTGGCACTAAC...TAAAAGTGGTTTCTGATTAGTAAAGCTTATGCTTAGCTTTGCACTCCCAGTTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
CDS-3UTR TCA 90 bp ACTTGTTCAACTCAGGCGATTTCCTTCACTTGGAAACTGAGCCTACAATACCCAAGCATGACCCGATCTTaGACTTCACTGTACTGCAAG +
Preference number: 4 (lower is better)
Translates to: TCSTQAISFTWKLSLQYPSMTRS*TSLYCK
Trigger: CTTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCT...TGGGTATTGTAGGCTCAGTTTCCAAGTGAAGGAAATCGCCTGAGTTGAACAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
CDS-3UTR TCA 90 bp AAATGCAGTATTATACTATCTCTGCTCAAGACAACCATGCCATTAACTGGGAGTAGCATGACCCGATCTTaGACTTCACTGTACTGCAAG +
Preference number: 4 (lower is better)
Translates to: KCSIILSLLKTTMPLTGSSMTRS*TSLYCK
Trigger: CTTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCT...ACTCCCAGTTAATGGCATGGTTGTCTTGAGCAGAGATAGTATAATACTGCATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR CAA 72 bp GAAACCACTTTTAAAGTCAATGACACAAAGTTTCACTaGTTCAACTCAGGCGATTTCCTTCACTTGGAAACT +
Preference number: 4 (lower is better)
Translates to: ETTFKVNDTKFH*FNSGDFLHLET
Trigger: AGTTTCCAAGTGAAGGAAATCGCCTGAGTTGAACAAGTGAAACTTTGTGTCATTGACTTTAAAAGTGGTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR CAA 72 bp TTAAGTCTTGAAGTTTCATTCAAGTTGACGACAGAGTaGTGTTCACCCACTGGAAATGCAGTATTATACTAT +
Preference number: 4 (lower is better)
Translates to: LSLEVSFKLTTE*CSPTGNAVLYY
Trigger: ATAGTATAATACTGCATTTCCAGTGGGTGAACACAACTCTGTCGTCAACTTGAATGAAACTTCAAGACTTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2
3UTR CAA 72 bp ATAAATAGTATCTTAAGTCTTGAAGTTTCATTCAAGTaGACGACAGAGTTGTGTTCACCCACTGGAAATGCA +
Preference number: 4 (lower is better)
Translates to: INSILSLEVSFK*TTELCSPTGNA
Trigger: TGCATTTCCAGTGGGTGAACACAACTCTGTCGTCAACTTGAATGAAACTTCAAGACTTAAGATACTATTTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045174.7
ENSMUST00000233210.2