Pregenerated sensors for YPEL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042675Ensembl transcript IDs: ENSMUST00000038614.12, ENSMUST00000106356.2, ENSMUST00000106357.8, ENSMUST00000106359.2, ENSMUST00000170882.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGCAGGTAAGAGGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTaGACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGAC | + |
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Preference number: 1 (lower is better) Translates to: LQVRGIQWERFTERW*TRAMRAAHRPYLWD Trigger: GTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGATCCCTCTTACCTGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGTGGGGGCCCTGAGGGTCCAGAGCTCCCTTCAGGAGGAGCGAAACCAGTGGGCGGCCAGGCCAGGCTaGAGCCACATGCGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: PVGALRVQSSLQEERNQWAARPG*SHMRQE Trigger: CTCCTGCCGCATGTGGCTTCAGCCTGGCCTGGCCGC...CCACTGGTTTCGCTCCTCCTGAAGGGAGCTCTGGACCCTCAGGGCCCCCACAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR TCA 90 bp | GATCCAAGCCAGCCAGATCGCAGGGAGGTGCAGGGGGTGGGGGTACAATCCCCCGCGGCCAGGCCAGGCTaGAGCCACATGCGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: DPSQPDRREVQGVGVQSPAARPG*SHMRQE Trigger: CTCCTGCCGCATGTGGCTTCAGCCTGGCCTGGCCGC...GGGGGATTGTACCCCCACCCCCTGCACCTCCCTGCGATCTGGCTGGCTTGGATC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR TCA 90 bp | TGCACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACAGGCAAGACGCGGCCAGGCCAGGCTaGAGCCACATGCGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: CTRAMRAAHRPYLWDRQDAARPG*SHMRQE Trigger: CTCCTGCCGCATGTGGCTTCAGCCTGGCCTGGCCGC...GTCTTGCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR TCA 90 bp | CACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACAGGCAAGACAGGCGGCCAGGCCAGGCTaGAGCCACATGCGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: HQGHESSTQALSMGQARQAARPG*SHMRQE Trigger: CTCCTGCCGCATGTGGCTTCAGCCTGGCCTGGCCGC...CTGTCTTGCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR CCA 90 bp | GGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCAACCAGTGGCTCCCCCTaGCGGCCAGGCCAGGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: GIQWERFTERWCTRAMRATSGSP*RPGQAE Trigger: TTCAGCCTGGCCTGGCCGCCAGGGGGAGCCACTGGT...TGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGATCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR CCA 90 bp | CAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCAGCACACACCAGTGGCTCCCCCTaGCGGCCAGGCCAGGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: QWERFTERWCTRAMRAAHTSGSP*RPGQAE Trigger: TTCAGCCTGGCCTGGCCGCCAGGGGGAGCCACTGGT...GTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR CCA 90 bp | ACGAGAACAGACACGTTGCAGGTAAGAGGGATCCAGTGGGAGAGATTCACAGAAACCAGTGGCTCCCCCTaGCGGCCAGGCCAGGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: TRTDTLQVRGIQWERFTETSGSP*RPGQAE Trigger: TTCAGCCTGGCCTGGCCGCCAGGGGGAGCCACTGGT...TTCTGTGAATCTCTCCCACTGGATCCCTCTTACCTGCAACGTGTCTGTTCTCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR CCA 90 bp | ATCCAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCAGCATGTATGTACAGGAGCTaGGTCCTTCCCCTGTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: IQWERFTERWCTRAMRAACMYRS*VLPLWG Trigger: CCCCCACAGGGGAAGGACCCAGCTCCTGTACATACA...TGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR CCA 90 bp | AGACACGTTGCAGGTAAGAGGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTGTGTATGTACAGGAGCTaGGTCCTTCCCCTGTGGGGG | + |
|
Preference number: 2 (lower is better) Translates to: RHVAGKRDPVGEIHRKVVCMYRS*VLPLWG Trigger: CCCCCACAGGGGAAGGACCCAGCTCCTGTACATACA...CACCACCTTTCTGTGAATCTCTCCCACTGGATCCCTCTTACCTGCAACGTGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR-3UTR CCA 90 bp | GGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCACACAGGCCTTATCTATaGGACAGGCAAGACAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: GIQWERFTERWCTRAMRAHRPYL*DRQDRK Trigger: CTTCCTGTCTTGCCTGTCCCATAGATAAGGCCTGTG...TGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGATCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR CCA 72 bp | GCTCCCTTCAGGAGGAGCGAAACCAGTGGCTCCCCCTaGCGGCCAGGCCAGGCTGAAGCCACATGCGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: APFRRSETSGSP*RPGQAEATCGR Trigger: CCTGCCGCATGTGGCTTCAGCCTGGCCTGGCCGCCAGGGGGAGCCACTGGTTTCGCTCCTCCTGAAGGGAGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR TCA 72 bp | GGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATaGGAGCAGCACACAGGCCTTATCTATGGGACAGGC | + |
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Preference number: 3 (lower is better) Translates to: GRDSQKGGAPGP*EQHTGLIYGTG Trigger: GCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR GCA 72 bp | AGAGGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTaGACCAGGGCCATGAGAGCAGCACACAGGCCTTAT | + |
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Preference number: 3 (lower is better) Translates to: RGIQWERFTERW*TRAMRAAHRPY Trigger: ATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGATCCCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR TCA 90 bp | CCTTCAGGAGGAGCGAAACCAGTGGCTCCCCCTGGCGGCCAGGCCAGGCTGAAGGGAAGGACTTGGAGATaGGGTCGTCGTGGTTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: PSGGAKPVAPPGGQARLKGRTWR*GRRGWP Trigger: TGGCCAACCACGACGACCTCATCTCCAAGTCCTTCC...CTTCAGCCTGGCCTGGCCGCCAGGGGGAGCCACTGGTTTCGCTCCTCCTGAAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR TCA 90 bp | CCTGTGGGGGCCCTGAGGGTCCAGAGCTCCCTTCAGGAGGAGCGAAACCAGTGGGGAAGGACTTGGAGATaGGGTCGTCGTGGTTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: PVGALRVQSSLQEERNQWGRTWR*GRRGWP Trigger: TGGCCAACCACGACGACCTCATCTCCAAGTCCTTCC...CCACTGGTTTCGCTCCTCCTGAAGGGAGCTCTGGACCCTCAGGGCCCCCACAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR TCA 90 bp | GGGTCCAGAGCTCCCTTCAGGAGGAGCGAAACCAGTGGCTCCCCCTGGCGGCCAATGTCAGCGACAGCATaGAGACCTGTCAGCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: GSRAPFRRSETSGSPWRPMSATA*RPVSST Trigger: GGTGCTGCTGACAGGTCTTCATGCTGTCGCTGACAT...TGGCCGCCAGGGGGAGCCACTGGTTTCGCTCCTCCTGAAGGGAGCTCTGGACCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR GCA 90 bp | GATCCAAGCCAGCCAGATCGCAGGGAGGTGCAGGGGGTGGGGGTACAATCCCCCAGGCACGTCCCTGACTaGCCTGGAAGGACTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: DPSQPDRREVQGVGVQSPRHVPD*PGRTWR Trigger: TCTCCAAGTCCTTCCAGGGCAGTCAGGGACGTGCCT...GGGGGATTGTACCCCCACCCCCTGCACCTCCCTGCGATCTGGCTGGCTTGGATC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR GCA 90 bp | CCTTCAGGAGGAGCGAAACCAGTGGCTCCCCCTGGCGGCCAGGCCAGGCTGAAGAGCCCAAAGTGGTCTTaGAGTTCTCACAGTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: PSGGAKPVAPPGGQARLKSPKWS*SSHSGC Trigger: ACATCCACTGTGAGAACTGCAAGACCACTTTGGGCT...CTTCAGCCTGGCCTGGCCGCCAGGGGGAGCCACTGGTTTCGCTCCTCCTGAAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR TCA 90 bp | CACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACAGGCAAGACAGGGAAGGACTTGGAGATaGGGTCGTCGTGGTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: HQGHESSTQALSMGQARQGRTWR*GRRGWP Trigger: TGGCCAACCACGACGACCTCATCTCCAAGTCCTTCC...CTGTCTTGCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CCA 90 bp | AATGAGATCCAAGCCAGCCAGATCGCAGGGAGGTGCAGGGGGTGGGGGTACAATAGGCCTGAAACGTCTTaGGCTTTGAAATCCGCACCA | + |
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Preference number: 4 (lower is better) Translates to: NEIQASQIAGRCRGWGYNRPETS*ALKSAP Trigger: TGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCT...ATTGTACCCCCACCCCCTGCACCTCCCTGCGATCTGGCTGGCTTGGATCTCATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR GCA 90 bp | AGACACGTTGCAGGTAAGAGGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTGAGGCACGTCCCTGACTaGCCTGGAAGGACTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RHVAGKRDPVGEIHRKVVRHVPD*PGRTWR Trigger: TCTCCAAGTCCTTCCAGGGCAGTCAGGGACGTGCCT...CACCACCTTTCTGTGAATCTCTCCCACTGGATCCCTCTTACCTGCAACGTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CCA 90 bp | CACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACAGGCAAGACAGAGGCCTGAAACGTCTTaGGCTTTGAAATCCGCACCA | + |
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Preference number: 4 (lower is better) Translates to: HQGHESSTQALSMGQARQRPETS*ALKSAP Trigger: TGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCT...CTGTCTTGCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CCA 90 bp | GAAAGGTGGTGCACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACCCCTCTTTGTACTTCTaGCTGCTCTCAAAGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: ERWCTRAMRAAHRPYLWDPSLYF*LLSKAC Trigger: GCAAGCCTTTGAGAGCAGCCAGAAGTACAAAGAGGG...GTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CCA 90 bp | TGCACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACAGGCAAGACCCCTCTTTGTACTTCTaGCTGCTCTCAAAGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: CTRAMRAAHRPYLWDRQDPSLYF*LLSKAC Trigger: GCAAGCCTTTGAGAGCAGCCAGAAGTACAAAGAGGG...GTCTTGCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR GCA 90 bp | CAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCAGCACACAGCCCAAAGTGGTCTTaGAGTTCTCACAGTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: QWERFTERWCTRAMRAAHSPKWS*SSHSGC Trigger: ACATCCACTGTGAGAACTGCAAGACCACTTTGGGCT...GTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CCA 90 bp | AGAGGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAAGGCCTGAAACGTCTTaGGCTTTGAAATCCGCACCA | + |
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Preference number: 4 (lower is better) Translates to: RGIQWERFTERWCTRAMRRPETS*ALKSAP Trigger: TGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCT...TCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGATCCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR TCA 90 bp | ACGAGAACAGACACGTTGCAGGTAAGAGGGATCCAGTGGGAGAGATTCACAGAAATGTCAGCGACAGCATaGAGACCTGTCAGCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: TRTDTLQVRGIQWERFTEMSATA*RPVSST Trigger: GGTGCTGCTGACAGGTCTTCATGCTGTCGCTGACAT...TTCTGTGAATCTCTCCCACTGGATCCCTCTTACCTGCAACGTGTCTGTTCTCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR GCA 90 bp | TTTTATTATTTACAAATGCTACAGAACGAGAACAGACACGTTGCAGGTAAGAGGAGGCACGTCCCTGACTaGCCTGGAAGGACTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: FYYLQMLQNENRHVAGKRRHVPD*PGRTWR Trigger: TCTCCAAGTCCTTCCAGGGCAGTCAGGGACGTGCCT...CCTCTTACCTGCAACGTGTCTGTTCTCGTTCTGTAGCATTTGTAAATAATAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| 3UTR CAA 72 bp | ATTATTTACAAATGCTACAGAACGAGAACAGACACGTaGCAGGTAAGAGGGATCCAGTGGGAGAGATTCACA | + |
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Preference number: 4 (lower is better) Translates to: IIYKCYRTRTDT*QVRGIQWERFT Trigger: TGTGAATCTCTCCCACTGGATCCCTCTTACCTGCAACGTGTCTGTTCTCGTTCTGTAGCATTTGTAAATAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | CCTGTGGGGGCCCTGAGGGTCCAGAGCTCCCTTCAGGAGGAGCGAAACCAGTGGCTGCCCTGGAAGGACTaGGAGATGAGGTCGTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: PVGALRVQSSLQEERNQWLPWKD*EMRSSW Trigger: CCACGACGACCTCATCTCCAAGTCCTTCCAGGGCAG...CCACTGGTTTCGCTCCTCCTGAAGGGAGCTCTGGACCCTCAGGGCCCCCACAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS TCA 90 bp | CCTCCGGTGACAGTCATCCAAGTAGGCCTGAAACGTCTTGGGCTTTaGAATCCGCACCATGGCGGGGGCCAAGGGCAGTGGCCCCACGCG | + |
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Preference number: 5 (lower is better) Translates to: PPVTVIQVGLKRLGL*NPHHGGGQGQWPHA Trigger: CGCGTGGGGCCACTGCCCTTGGCCCCCGCCATGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGACTGTCACCGGAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106359.2 |
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| CDS CCA 90 bp | AGCTATACCTCCGGTGACAGTCATCCAAGTAGGCCTGAAACGTCTTaGGCTTTGAAATCCGCACCATGGCGGGGGCCAAGGGCAGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: SYTSGDSHPSRPETS*ALKSAPWRGPRAVA Trigger: GGCCACTGCCCTTGGCCCCCGCCATGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGACTGTCACCGGAGGTATAGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106359.2 |
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| CDS-3UTR CAA 90 bp | GAAAGGTGGTGCACCAGGGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACCTGCCCTGGAAGGACTaGGAGATGAGGTCGTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: ERWCTRAMRAAHRPYLWDLPWKD*EMRSSW Trigger: CCACGACGACCTCATCTCCAAGTCCTTCCAGGGCAG...GTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | CAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCAGCACACCTGCCCTGGAAGGACTaGGAGATGAGGTCGTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: QWERFTERWCTRAMRAAHLPWKD*EMRSSW Trigger: CCACGACGACCTCATCTCCAAGTCCTTCCAGGGCAG...GTGTGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | GATCCAAGCCAGCCAGATCGCAGGGAGGTGCAGGGGGTGGGGGTACAATCCCCCTCCCAGCCGTTGTCTTaGATCATGTGGTTGAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: DPSQPDRREVQGVGVQSPSQPLS*IMWLSS Trigger: TGAACTCAACCACATGATCAAAGACAACGGCTGGGA...GGGGGATTGTACCCCCACCCCCTGCACCTCCCTGCGATCTGGCTGGCTTGGATC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | ATCCAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCAGCACTGCCCTGGAAGGACTaGGAGATGAGGTCGTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: IQWERFTERWCTRAMRAALPWKD*EMRSSW Trigger: CCACGACGACCTCATCTCCAAGTCCTTCCAGGGCAG...TGCTGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | GGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACAGGCAAGACAGGAAGGGCAGCCCAAAGTGGTCTaGCAGTTCTCACAGTGGATG | + |
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Preference number: 5 (lower is better) Translates to: GHESSTQALSMGQARQEGQPKVV*QFSQWM Trigger: CATCCACTGTGAGAACTGCAAGACCACTTTGGGCTG...CCCTTCCTGTCTTGCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | GGCCATGAGAGCAGCACACAGGCCTTATCTATGGGACAGGCAAGACAGGAAGGGTCCCAGCCGTTGTCTTaGATCATGTGGTTGAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: GHESSTQALSMGQARQEGSQPLS*IMWLSS Trigger: TGAACTCAACCACATGATCAAAGACAACGGCTGGGA...CCCTTCCTGTCTTGCCTGTCCCATAGATAAGGCCTGTGTGCTGCTCTCATGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | GGGATCCAGTGGGAGAGATTCACAGAAAGGTGGTGCACCAGGGCCATGAGAGCATCCCAGCCGTTGTCTTaGATCATGTGGTTGAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: GIQWERFTERWCTRAMRASQPLS*IMWLSS Trigger: TGAACTCAACCACATGATCAAAGACAACGGCTGGGA...TGCTCTCATGGCCCTGGTGCACCACCTTTCTGTGAATCTCTCCCACTGGATCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038614.12 ENSMUST00000106356.2 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS-3UTR CAA 90 bp | ACGAGAACAGACACGTTGCAGGTAAGAGGGATCCAGTGGGAGAGATTCACAGAATCCCAGCCGTTGTCTTaGATCATGTGGTTGAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: TRTDTLQVRGIQWERFTESQPLS*IMWLSS Trigger: TGAACTCAACCACATGATCAAAGACAACGGCTGGGA...TTCTGTGAATCTCTCCCACTGGATCCCTCTTACCTGCAACGTGTCTGTTCTCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038614.12 ENSMUST00000106357.8 ENSMUST00000170882.8 |
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| CDS CAA 90 bp | ACCTCCGGTGACAGTCATCCAAGTAGGCCTGAAACGTCTTGGGCTTaGAAATCCGCACCATGGCGGGGGCCAAGGGCAGTGGCCCCACGC | + |
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Preference number: 6 (lower is better) Translates to: TSGDSHPSRPETSWA*KSAPWRGPRAVAPR Trigger: GCGTGGGGCCACTGCCCTTGGCCCCCGCCATGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGACTGTCACCGGAGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106359.2 |
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| CDS TCA 72 bp | ACAGTCATCCAAGTAGGCCTGAAACGTCTTGGGCTTTaGAATCCGCACCATGGCGGGGGCCAAGGGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: TVIQVGLKRLGL*NPHHGGGQGQW Trigger: CCACTGCCCTTGGCCCCCGCCATGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGACTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106359.2 |
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| CDS CCA 72 bp | TCCGGTGACAGTCATCCAAGTAGGCCTGAAACGTCTTaGGCTTTGAAATCCGCACCATGGCGGGGGCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: SGDSHPSRPETS*ALKSAPWRGPR Trigger: CCTTGGCCCCCGCCATGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGACTGTCACCGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106359.2 |
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| CDS CAA 72 bp | GACAGTCATCCAAGTAGGCCTGAAACGTCTTGGGCTTaGAAATCCGCACCATGGCGGGGGCCAAGGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: DSHPSRPETSWA*KSAPWRGPRAV Trigger: CACTGCCCTTGGCCCCCGCCATGGTGCGGATTTCAAAGCCCAAGACGTTTCAGGCCTACTTGGATGACTGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106359.2 |
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