Pregenerated sensors for YIPF6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047694Ensembl transcript IDs: ENSMUST00000054697.7, ENSMUST00000113811.8, ENSMUST00000124010.2, ENSMUST00000151353.8
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAAGTCTCTACTCTTCCTATTGCTAAGCCATGTAAAACAGTGTCATaGTCTGAGATGTGGAAGCAGCAGGTGATCGTCGGAGTCGGCTAC | + |
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Preference number: 1 (lower is better) Translates to: QVSTLPIAKPCKTVS*SEMWKQQVIVGVGY Trigger: GTAGCCGACTCCGACGATCACCTGCTGCTTCCACATCTCAGACCATGACACTGTTTTACATGGCTTAGCAATAGGAAGAGTAGAGACTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR GCA 90 bp | AGCAAATCACCCAAGGGCAACAGATTAACACACACAGGATCAAGCTaGCTTATATCCAACGTGTTTAACCCTCCAAAACCCTTACGGCTT | + |
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Preference number: 1 (lower is better) Translates to: SKSPKGNRLTHTGSS*LISNVFNPPKPLRL Trigger: AAGCCGTAAGGGTTTTGGAGGGTTAAACACGTTGGATATAAGGCAGCTTGATCCTGTGTGTGTTAATCTGTTGCCCTTGGGTGATTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR CCA 90 bp | AGGATAAACTCAGCAATGCTTTGTAACTCATCCCATGAACCCATTTaGCCTAGTGTTGCTCATTTGGTTACTTTGAGAATGAGAAAAATT | + |
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Preference number: 1 (lower is better) Translates to: RINSAMLCNSSHEPI*PSVAHLVTLRMRKI Trigger: AATTTTTCTCATTCTCAAAGTAACCAAATGAGCAACACTAGGCCAAATGGGTTCATGGGATGAGTTACAAAGCATTGCTGAGTTTATCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR CCA 90 bp | ACACGAATAGCTTCATCATGCCTTAAGGAGGCATGTTACTATCTATaGGATGTACAAGTATTTGAAAAGAATAACATTAAGAGGAAAAGG | + |
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Preference number: 1 (lower is better) Translates to: TRIASSCLKEACYYL*DVQVFEKNNIKRKR Trigger: CCTTTTCCTCTTAATGTTATTCTTTTCAAATACTTGTACATCCCATAGATAGTAACATGCCTCCTTAAGGCATGATGAAGCTATTCGTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR CCA 90 bp | AAGCCAAACCAAACACACACACACACACACACACACACACACACACACACACACCTGCTGAGCCCACTATaGAAAGGCAGCAGCTATAAA | + |
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Preference number: 2 (lower is better) Translates to: KPNQTHTHTHTHTHTHTHLLSPL*KGSSYK Trigger: TTTATAGCTGCTGCCTTTCCATAGTGGGCTCAGCAG...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGTTTGGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR CCA 90 bp | CTGCACAGTGATACAGACATTCTCAAATTAAATAGTGGTGCTGCTTGCGTAATTACTTGCTCGAGTCACTaGGTCACACGAATAGCTTCA | + |
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Preference number: 2 (lower is better) Translates to: LHSDTDILKLNSGAACVITCSSH*VTRIAS Trigger: TGAAGCTATTCGTGTGACCCAGTGACTCGAGCAAGT...AATTACGCAAGCAGCACCACTATTTAATTTGAGAATGTCTGTATCACTGTGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR GCA 90 bp | CATCCAACCATCATAGAAACCAACAGTCTAGTTAAAGATCACTTCAGTGTTCAACTAGAGTGCTGTGCATaGCTGGCTAATGCTCTATCA | + |
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Preference number: 2 (lower is better) Translates to: HPTIIETNSLVKDHFSVQLECCA*LANALS Trigger: TGATAGAGCATTAGCCAGGCATGCACAGCACTCTAG...TTGAACACTGAAGTGATCTTTAACTAGACTGTTGGTTTCTATGATGGTTGGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR CAA 90 bp | TATAACATCCACAAACCATTTTCCAGGTTTCTTTGCACAGGTTTATaGCTCATAGGAAAGACCAGGACTAGAGTAGAGTACCAAAGACCA | + |
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Preference number: 2 (lower is better) Translates to: YNIHKPFSRFLCTGL*LIGKTRTRVEYQRP Trigger: TGGTCTTTGGTACTCTACTCTAGTCCTGGTCTTTCCTATGAGCAATAAACCTGTGCAAAGAAACCTGGAAAATGGTTTGTGGATGTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR TCA 90 bp | TCTGATCAAAATCTGAAACTAGTTAACACGTTTTCTCTTCCCACATCTACAAACCCATTATCTTTCAGGTaGGCCTTCAGTTCATTGGTG | + |
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Preference number: 2 (lower is better) Translates to: SDQNLKLVNTFSLPTSTNPLSFR*AFSSLV Trigger: CACCAATGAACTGAAGGCTCACCTGAAAGATAATGG...GTTTGTAGATGTGGGAAGAGAAAACGTGTTAACTAGTTTCAGATTTTGATCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR GCA 90 bp | ATTTACTTCCATCCAACCATCATAGAAACCAACAGTCTAGTTAAAGATCACTTCGAGAGGACAGGTAGATaGACATGTGCAAAATGTACA | + |
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Preference number: 2 (lower is better) Translates to: IYFHPTIIETNSLVKDHFERTGR*TCAKCT Trigger: TGTACATTTTGCACATGTGCATCTACCTGTCCTCTC...GAAGTGATCTTTAACTAGACTGTTGGTTTCTATGATGGTTGGATGGAAGTAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR GCA 90 bp | CTGCACAGTGATACAGACATTCTCAAATTAAATAGTGGTGCTGCTTGCGTAATTGGAAAAGGACAGCCTTaGAAATATCAGTTTCTTATA | + |
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Preference number: 2 (lower is better) Translates to: LHSDTDILKLNSGAACVIGKGQP*KYQFLI Trigger: TATAAGAAACTGATATTTGCAAGGCTGTCCTTTTCC...AATTACGCAAGCAGCACCACTATTTAATTTGAGAATGTCTGTATCACTGTGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR GCA 72 bp | TGGCAATGCCCAGGATTGAACCTAGAGTGCTGTGCATaGCTGGCTAATGCTCTATCACTGAACTACAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: WQCPGLNLECCA*LANALSLNYSL Trigger: GAGGCTGTAGTTCAGTGATAGAGCATTAGCCAGGCATGCACAGCACTCTAGGTTCAATCCTGGGCATTGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR GCA 72 bp | CCCAAGGGCAACAGATTAACACACACAGGATCAAGCTaGCTTATATCCAACGTGTTTAACCCTCCAAAACCC | + |
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Preference number: 3 (lower is better) Translates to: PKGNRLTHTGSS*LISNVFNPPKP Trigger: GGGTTTTGGAGGGTTAAACACGTTGGATATAAGGCAGCTTGATCCTGTGTGTGTTAATCTGTTGCCCTTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR CCA 72 bp | ACTCTTCCTATTGCTAAGCCATGTAAAACAGTGTCATaGTCTGAGATGTGGAAGCAGCAGGTGATCGTCGGA | + |
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Preference number: 3 (lower is better) Translates to: TLPIAKPCKTVS*SEMWKQQVIVG Trigger: TCCGACGATCACCTGCTGCTTCCACATCTCAGACCATGACACTGTTTTACATGGCTTAGCAATAGGAAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR CCA 72 bp | TCAGCAATGCTTTGTAACTCATCCCATGAACCCATTTaGCCTAGTGTTGCTCATTTGGTTACTTTGAGAATG | + |
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Preference number: 3 (lower is better) Translates to: SAMLCNSSHEPI*PSVAHLVTLRM Trigger: CATTCTCAAAGTAACCAAATGAGCAACACTAGGCCAAATGGGTTCATGGGATGAGTTACAAAGCATTGCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR CCA 72 bp | TGTAAAATGAGAATTGTAGCACTTTCTGTTGAAGAGTaGAGGAACCAGGCATTGAGAATAGTACCTGGCCAA | + |
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Preference number: 3 (lower is better) Translates to: CKMRIVALSVEE*RNQALRIVPGQ Trigger: TTGGCCAGGTACTATTCTCAATGCCTGGTTCCTCCACTCTTCAACAGAAAGTGCTACAATTCTCATTTTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR CAA 90 bp | GAATCTAGAGGAGGACCTCTAATTTACATACATGGATCCATCAACATTCATACATTAATACCCCAACAATaGTACAAGAGTGGGAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: ESRGGPLIYIHGSINIHTLIPQQ*YKSGRS Trigger: ACTTCTCCCACTCTTGTACAATTGTTGGGGTATTAA...TGTATGAATGTTGATGGATCCATGTATGTAAATTAGAGGTCCTCCTCTAGATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR-3UTR CAA 90 bp | GAATCTAGAGGAGGACCTCTAATTTACATACATGGATCCATCAACATTCATACAAGGAAAAGGACAGCCTaGCAAATATCAGTTTCTTAT | + |
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Preference number: 3 (lower is better) Translates to: ESRGGPLIYIHGSINIHTRKRTA*QISVSY Trigger: ATAAGAAACTGATATTTGCAAGGCTGTCCTTTTCCT...TGTATGAATGTTGATGGATCCATGTATGTAAATTAGAGGTCCTCCTCTAGATTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR TCA 72 bp | TTAAACCATCAAGCACTTCAGTTAGAGTTGCATGTTTaGCTGCTGTCACTGTATGAAAGGTTAAAAACTAGA | + |
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Preference number: 3 (lower is better) Translates to: LNHQALQLELHV*LLSLYERLKTR Trigger: TCTAGTTTTTAACCTTTCATACAGTGACAGCAGTCAAACATGCAACTCTAACTGAAGTGCTTGATGGTTTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR TCA 72 bp | AGATCACTTCAGTGTTCAAACCATACTAACACGACTTaGTGGTACCCAAAAATATCAACCAACAAAATTTCA | + |
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Preference number: 3 (lower is better) Translates to: RSLQCSNHTNTT*WYPKISTNKIS Trigger: TGAAATTTTGTTGGTTGATATTTTTGGGTACCATCAAGTCGTGTTAGTATGGTTTGAACACTGAAGTGATCT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR TCA 72 bp | GTTCTTACCATCAATTCACTTGCATGCATCAATACATaGTCTTGGGCAATTACATTTCTGTGCCTAAATTTT | + |
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Preference number: 3 (lower is better) Translates to: VLTINSLACINT*SWAITFLCLNF Trigger: AAAATTTAGGCACAGAAATGTAATTGCCCAAGATCATGTATTGATGCATGCAAGTGAATTGATGGTAAGAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR TCA 72 bp | CATCACATCTATCCGAATAGAAAGGCATTCAGTACTTaGATGACTTTAATCTTAAGTCTTAGAAATAGACCC | + |
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Preference number: 3 (lower is better) Translates to: HHIYPNRKAFST*MTLILSLRNRP Trigger: GGGTCTATTTCTAAGACTTAAGATTAAAGTCATTCAAGTACTGAATGCCTTTCTATTCGGATAGATGTGATG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| 3UTR GCA 72 bp | GCATTTCATCTAATGTGTTCTTACCATCAATTCACTTaGATGCATCAATACATGATCTTGGGCAATTACATT | + |
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Preference number: 3 (lower is better) Translates to: AFHLMCSYHQFT*MHQYMILGNYI Trigger: AATGTAATTGCCCAAGATCATGTATTGATGCATGCAAGTGAATTGATGGTAAGAACACATTAGATGAAATGC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR CCA 90 bp | CCATGTAAAACAGTGTCATGGTCTGAGATGTGGAAGCAGCAGGTGATCGTCGGACTGCAAACAGGGGCTTaGATGCCGCTGCCTCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: PCKTVSWSEMWKQQVIVGLQTGA*MPLPPV Trigger: AACAGGAGGCAGCGGCATCCAAGCCCCTGTTTGCAG...TCCGACGATCACCTGCTGCTTCCACATCTCAGACCATGACACTGTTTTACATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR TCA 90 bp | CCATGTAAAACAGTGTCATGGTCTGAGATGTGGAAGCAGCAGGTGATCGTCGGAAATGTCCTGAGAAATTaGCACATCAGACAACCCTGC | + |
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Preference number: 4 (lower is better) Translates to: PCKTVSWSEMWKQQVIVGNVLRN*HIRQPC Trigger: GCAGGGTTGTCTGATGTGTCAATTTCTCAGGACATT...TCCGACGATCACCTGCTGCTTCCACATCTCAGACCATGACACTGTTTTACATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR GCA 90 bp | CTGCACAGTGATACAGACATTCTCAAATTAAATAGTGGTGCTGCTTGCGTAATTAAACAGGGGCTTGGATaGCGCTGCCTCCTGTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LHSDTDILKLNSGAACVIKQGLG*RCLLFS Trigger: GGAGAACAGGAGGCAGCGGCATCCAAGCCCCTGTTT...AATTACGCAAGCAGCACCACTATTTAATTTGAGAATGTCTGTATCACTGTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR GCA 90 bp | TACAGTCAACCATGTGCCTTTGTAGCGAACCAGGAAAAGCTAGATTACAACTTCCACATCAGACAACCCTaGAAACAGGGGCTTGGATGC | + |
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Preference number: 4 (lower is better) Translates to: YSQPCAFVANQEKLDYNFHIRQP*KQGLGC Trigger: GCATCCAAGCCCCTGTTTGCAGGGTTGTCTGATGTG...GAAGTTGTAATCTAGCTTTTCCTGGTTCGCTACAAAGGCACATGGTTGACTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR CCA 90 bp | TGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCTGCAAACAGGGGCTTaGATGCCGCTGCCTCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: CTRVGEVVVVDNHYLSGELQTGA*MPLPPV Trigger: AACAGGAGGCAGCGGCATCCAAGCCCCTGTTTGCAG...CTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR GCA 90 bp | CCTTTTAATACCCCAACAATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAAAACAGGGGCTTGGATaGCGCTGCCTCCTGTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: PFNTPTIVQEWEKLLLLIKQGLG*RCLLFS Trigger: GGAGAACAGGAGGCAGCGGCATCCAAGCCCCTGTTT...TATCAACAACAACAACTTCTCCCACTCTTGTACAATTGTTGGGGTATTAAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CCA 90 bp | TTCAAACTCACCAGCAGCATGAAACTGCACCATCTTAGAACAGGAGGTCCTTCCAATCATGAAGTTTATTaGTCCCTGTCCAGCCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: FKLTSSMKLHHLRTGGPSNHEVY*SLSSQK Trigger: CTTTTGGCTGGACAGGGACCAATAAACTTCATGATT...GGAAGGACCTCCTGTTCTAAGATGGTGCAGTTTCATGCTGCTGGTGAGTTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR TCA 90 bp | TGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCCTTCAGTTCAATGTCCTGAGAAATTaGCACATCAGACAACCCTGC | + |
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Preference number: 4 (lower is better) Translates to: WEKLLLLITIIFQVSLQFNVLRN*HIRQPC Trigger: GCAGGGTTGTCTGATGTGTCAATTTCTCAGGACATT...GAACTGAAGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR GCA 90 bp | AATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTCACATCAGACAACCCTaGAAACAGGGGCTTGGATGC | + |
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Preference number: 4 (lower is better) Translates to: NCTRVGEVVVVDNHYLSGHIRQP*KQGLGC Trigger: GCATCCAAGCCCCTGTTTGCAGGGTTGTCTGATGTG...ACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR GCA 90 bp | TGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCCTTCAGTTCAAAGACAGGATACACTaGCAGGGCTTTTCTGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: WEKLLLLITIIFQVSLQFKDRIH*QGFSVW Trigger: CCAAACAGAAAAGCCCTGGCAGTGTATCCTGTCTTT...GAACTGAAGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR GCA 90 bp | ACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCCTAAAGACAGGATACACTaGCAGGGCTTTTCTGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: TRVGEVVVVDNHYLSGEPKDRIH*QGFSVW Trigger: CCAAACAGAAAAGCCCTGGCAGTGTATCCTGTCTTT...AGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CCA 90 bp | ACCCCAACAATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCTGTTTGGAGGCTaGCTGTCAGCAAGGAATGCT | + |
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Preference number: 4 (lower is better) Translates to: TPTIVQEWEKLLLLITIIFLFGG*LSARNA Trigger: AGCATTCCTTGCTGACAGCCAGCCTCCAAACAGAAA...GATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATTGTTGGGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| 3UTR CAA 72 bp | ACCCCAACAATTGTACAAGAGTGGGAGAAGTTGTTGTaGTTGATAACCATTATCTTTCAGGTGAGCCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: TPTIVQEWEKLL*LITIIFQVSLQ Trigger: CTGAAGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATTGTTGGGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR TCA 90 bp | ACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCCTTCTATGGGAATGTCCTaGGAAATTGACACATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: TRVGEVVVVDNHYLSGEPSMGMS*EIDTSD Trigger: GTCTGATGTGTCAATTTCTCAGGACATTCCCATAGA...AGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR TCA 90 bp | GTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCTCTATGGGAATGTCCTaGGAAATTGACACATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: VQEWEKLLLLITIIFQVSSMGMS*EIDTSD Trigger: GTCTGATGTGTCAATTTCTCAGGACATTCCCATAGA...GCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR GCA 90 bp | TCATCATGCCTTAAGGAGGCATGTTACTATCTATGGGATGTACAAGTATTTGAAGATAACAAATACTTCTaGGAATTCTGGGCCTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: SSCLKEACYYLWDVQVFEDNKYF*EFWASA Trigger: GGCGGAGGCCCAGAATTCGCAGAAGTATTTGTTATC...TTCAAATACTTGTACATCCCATAGATAGTAACATGCCTCCTTAAGGCATGATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR GCA 90 bp | TGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCCTTCAGTTCTGTTCAAAGGAAGAATaGAGTACCCTAATACACAGA | + |
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Preference number: 4 (lower is better) Translates to: WEKLLLLITIIFQVSLQFCSKEE*STLIHR Trigger: TCTGTGTATTAGGGTACTGCATTCTTCCTTTGAACA...GAACTGAAGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CCA 90 bp | TGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGAATCATGAAGTTTATTaGTCCCTGTCCAGCCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: CTRVGEVVVVDNHYLSGENHEVY*SLSSQK Trigger: CTTTTGGCTGGACAGGGACCAATAAACTTCATGATT...CTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR TCA 90 bp | AATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTCAAAAAGCCGAATCATaGAGTTTATTGGTCCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: NCTRVGEVVVVDNHYLSGQKAES*SLLVPV Trigger: GACAGGGACCAATAAACTTCATGATTCGGCTTTTTG...ACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| 3UTR CAA 72 bp | TTTAATACCCCAACAATTGTACAAGAGTGGGAGAAGTaGTTGTTGTTGATAACCATTATCTTTCAGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: FNTPTIVQEWEK*LLLITIIFQVS Trigger: GCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATTGTTGGGGTATTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR GCA 90 bp | TACCCCAACAATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATTGTTCAAAGGAAGAATaGAGTACCCTAATACACAGA | + |
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Preference number: 4 (lower is better) Translates to: YPNNCTRVGEVVVVDNHYCSKEE*STLIHR Trigger: TCTGTGTATTAGGGTACTGCATTCTTCCTTTGAACA...ATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATTGTTGGGGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| 3UTR CAA 72 bp | TACCATCAATTCACTTGCATGCATCAATACATGATCTaGGGCAATTACATTTCTGTGCCTAAATTTTCTACT | + |
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Preference number: 4 (lower is better) Translates to: YHQFTCMHQYMI*GNYISVPKFST Trigger: AGTAGAAAATTTAGGCACAGAAATGTAATTGCCCAAGATCATGTATTGATGCATGCAAGTGAATTGATGGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS TCA 90 bp | ATGGTCCGACGAATGGATTCATTCAGTGTGGAGCTGTCATGTTCTTaGGCACGAGCTCTGGAGGGGATGGTAATCTCCCCTTCTATGGGA | + |
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Preference number: 5 (lower is better) Translates to: MVRRMDSFSVELSCS*ARALEGMVISPSMG Trigger: TCCCATAGAAGGGGAGATTACCATCCCCTCCAGAGCTCGTGCTCAAGAACATGACAGCTCCACACTGAATGAATCCATTCGTCGGACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS GCA 90 bp | GGCTTTTCTGTTTGGAGGCTGGCTGTCAGCAAGGAATGCTGTAGATaGCACCACGGACCAAGCGAACATCAACAACACTACAAAAAGCCG | + |
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Preference number: 5 (lower is better) Translates to: GFSVWRLAVSKECCR*HHGPSEHQQHYKKP Trigger: CGGCTTTTTGTAGTGTTGTTGATGTTCGCTTGGTCCGTGGTGGCATCTACAGCATTCCTTGCTGACAGCCAGCCTCCAAACAGAAAAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS CCA 90 bp | AATAAAAAGACAGGATACACTGCCAGGGCTTTTCTGTTTGGAGGCTaGCTGTCAGCAAGGAATGCTGTAGATGCCACCACGGACCAAGCG | + |
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Preference number: 5 (lower is better) Translates to: NKKTGYTARAFLFGG*LSARNAVDATTDQA Trigger: CGCTTGGTCCGTGGTGGCATCTACAGCATTCCTTGCTGACAGCCAGCCTCCAAACAGAAAAGCCCTGGCAGTGTATCCTGTCTTTTTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS TCA 90 bp | CCACGGACCAAGCGAACATCAACAACACTACAAAAAGCCGAATCATaGAGTTTATTGGTCCCTGTCCAGCCAAAAGCAGCAAGCGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: PRTKRTSTTLQKAES*SLLVPVQPKAASGR Trigger: TCTGCCGCTTGCTGCTTTTGGCTGGACAGGGACCAATAAACTTCATGATTCGGCTTTTTGTAGTGTTGTTGATGTTCGCTTGGTCCGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS-3UTR CAA 90 bp | CCATGTAAAACAGTGTCATGGTCTGAGATGTGGAAGCAGCAGGTGATCGTCGGAAGCGGCAGATCAGCATaGCGATGTTCAAAGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: PCKTVSWSEMWKQQVIVGSGRSA*RCSKEE Trigger: TTCTTCCTTTGAACATCGCAATGCTGATCTGCCGCT...TCCGACGATCACCTGCTGCTTCCACATCTCAGACCATGACACTGTTTTACATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054697.7 |
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| CDS-3UTR CAA 90 bp | AAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCCTTCAGTTCATTGGTCCTGCAAACAGGGGCTaGGATGCCGCTGCCTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: KLLLLITIIFQVSLQFIGPANRG*DAAASC Trigger: ACAGGAGGCAGCGGCATCCAAGCCCCTGTTTGCAGG...ACCAATGAACTGAAGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CAA 90 bp | GTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCGGAGCTGTCATGTTCTaGAGCACGAGCTCTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: VQEWEKLLLLITIIFQVSGAVMF*STSSGG Trigger: CCCTCCAGAGCTCGTGCTCAAGAACATGACAGCTCC...GCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CAA 90 bp | TGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAGCCTTCAGTTCGGAGCTGTCATGTTCTaGAGCACGAGCTCTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: WEKLLLLITIIFQVSLQFGAVMF*STSSGG Trigger: CCCTCCAGAGCTCGTGCTCAAGAACATGACAGCTCC...GAACTGAAGGCTCACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS CCA 90 bp | AGCGAACATCAACAACACTACAAAAAGCCGAATCATGAAGTTTATTaGTCCCTGTCCAGCCAAAAGCAGCAAGCGGCAGATCAGCATTGC | + |
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Preference number: 5 (lower is better) Translates to: SEHQQHYKKPNHEVY*SLSSQKQQAADQHC Trigger: GCAATGCTGATCTGCCGCTTGCTGCTTTTGGCTGGACAGGGACCAATAAACTTCATGATTCGGCTTTTTGTAGTGTTGTTGATGTTCGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS-3UTR CAA 90 bp | ATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGCCAGGGCTTTTCTGTTaGGAGGCTGGCTGTCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: IVQEWEKLLLLITIIFQVPGLFC*EAGCQQ Trigger: TTGCTGACAGCCAGCCTCCAAACAGAAAAGCCCTGG...CACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS GCA 90 bp | AGAAATGTTTCCGCCAAGAAGTTTGGAATTCAGCGTGATGGTAACTaGTCCAAACCAGATGATAACAAATACTTCTGCGAATTCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: RNVSAKKFGIQRDGN*SKPDDNKYFCEFWA Trigger: GGCCCAGAATTCGCAGAAGTATTTGTTATCATCTGGTTTGGAGCAGTTACCATCACGCTGAATTCCAAACTTCTTGGCGGAAACATTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS CCA 90 bp | ATACTTCTGCGAATTCTGGGCCTCCGCCATCATTCTTCCCATCAATaGAACTTTTCTGTAACATCAATGCAAGTGTCACACAAAGTATCA | + |
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Preference number: 5 (lower is better) Translates to: ILLRILGLRHHSSHQ*NFSVTSMQVSHKVS Trigger: TGATACTTTGTGTGACACTTGCATTGATGTTACAGAAAAGTTCCATTGATGGGAAGAATGATGGCGGAGGCCCAGAATTCGCAGAAGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS-3UTR CAA 90 bp | CCTTTTAATACCCCAACAATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAAGCGGCAGATCAGCATaGCGATGTTCAAAGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: PFNTPTIVQEWEKLLLLISGRSA*RCSKEE Trigger: TTCTTCCTTTGAACATCGCAATGCTGATCTGCCGCT...TATCAACAACAACAACTTCTCCCACTCTTGTACAATTGTTGGGGTATTAAAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CAA 90 bp | ATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGGAATGTCCTGAGAAATaGACACATCAGACAACCCTG | + |
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Preference number: 5 (lower is better) Translates to: IVQEWEKLLLLITIIFQVECPEK*THQTTL Trigger: CAGGGTTGTCTGATGTGTCAATTTCTCAGGACATTC...CACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CAA 90 bp | ATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGTTTCCGCCAAGAAGTTaGGAATTCAGCGTGATGGTA | + |
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Preference number: 5 (lower is better) Translates to: IVQEWEKLLLLITIIFQVFPPRS*EFSVMV Trigger: TACCATCACGCTGAATTCCAAACTTCTTGGCGGAAA...CACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CAA 90 bp | AATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTGAATGTCCTGAGAAATaGACACATCAGACAACCCTG | + |
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Preference number: 5 (lower is better) Translates to: NCTRVGEVVVVDNHYLSGECPEK*THQTTL Trigger: CAGGGTTGTCTGATGTGTCAATTTCTCAGGACATTC...ACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS-3UTR CAA 90 bp | AATTGTACAAGAGTGGGAGAAGTTGTTGTTGTTGATAACCATTATCTTTCAGGTTTTCCGCCAAGAAGTTaGGAATTCAGCGTGATGGTA | + |
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Preference number: 5 (lower is better) Translates to: NCTRVGEVVVVDNHYLSGFPPRS*EFSVMV Trigger: TACCATCACGCTGAATTCCAAACTTCTTGGCGGAAA...ACCTGAAAGATAATGGTTATCAACAACAACAACTTCTCCCACTCTTGTACAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 |
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| CDS GCA 72 bp | ATCAGACAACCCTGCAAACAGGGGCTTGGATGCCGCTaGCTCCTGTTCTCCCGGAGAGTCCTCCGCTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: IRQPCKQGLGCR*LLFSRRVLRFR Trigger: GCGGAAGCGGAGGACTCTCCGGGAGAACAGGAGGCAGCGGCATCCAAGCCCCTGTTTGCAGGGTTGTCTGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000124010.2 ENSMUST00000151353.8 |
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| CDS CCA 72 bp | AAATTGACACATCAGACAACCCTGCAAACAGGGGCTTaGATGCCGCTGCCTCCTGTTCTCCCGGAGAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: KLTHQTTLQTGA*MPLPPVLPESP Trigger: AGGACTCTCCGGGAGAACAGGAGGCAGCGGCATCCAAGCCCCTGTTTGCAGGGTTGTCTGATGTGTCAATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000124010.2 ENSMUST00000151353.8 |
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| CDS CAA 90 bp | AATGGTCCGACGAATGGATTCATTCAGTGTGGAGCTGTCATGTTCTaGAGCACGAGCTCTGGAGGGGATGGTAATCTCCCCTTCTATGGG | + |
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Preference number: 6 (lower is better) Translates to: NGPTNGFIQCGAVMF*STSSGGDGNLPFYG Trigger: CCCATAGAAGGGGAGATTACCATCCCCTCCAGAGCTCGTGCTCAAGAACATGACAGCTCCACACTGAATGAATCCATTCGTCGGACCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS TCA 72 bp | CGAATGGATTCATTCAGTGTGGAGCTGTCATGTTCTTaGGCACGAGCTCTGGAGGGGATGGTAATCTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: RMDSFSVELSCS*ARALEGMVISP Trigger: AGGGGAGATTACCATCCCCTCCAGAGCTCGTGCTCAAGAACATGACAGCTCCACACTGAATGAATCCATTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS CAA 72 bp | ACGAATGGATTCATTCAGTGTGGAGCTGTCATGTTCTaGAGCACGAGCTCTGGAGGGGATGGTAATCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: TNGFIQCGAVMF*STSSGGDGNLP Trigger: GGGGAGATTACCATCCCCTCCAGAGCTCGTGCTCAAGAACATGACAGCTCCACACTGAATGAATCCATTCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS CAA 72 bp | CCTGTCCAGCCAAAAGCAGCAAGCGGCAGATCAGCATaGCGATGTTCAAAGGAAGAATGCAGTACCCTAATA | + |
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Preference number: 6 (lower is better) Translates to: PVQPKAASGRSA*RCSKEECSTLI Trigger: TATTAGGGTACTGCATTCTTCCTTTGAACATCGCAATGCTGATCTGCCGCTTGCTGCTTTTGGCTGGACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS CAA 90 bp | TTATTGGTCCCTGTCCAGCCAAAAGCAGCAAGCGGCAGATCAGCATaGCGATGTTCAAAGGAAGAATGCAGTACCCTAATACACAGAGAC | + |
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Preference number: 6 (lower is better) Translates to: LLVPVQPKAASGRSA*RCSKEECSTLIHRD Trigger: GTCTCTGTGTATTAGGGTACTGCATTCTTCCTTTGAACATCGCAATGCTGATCTGCCGCTTGCTGCTTTTGGCTGGACAGGGACCAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS CCA 72 bp | CAACAACACTACAAAAAGCCGAATCATGAAGTTTATTaGTCCCTGTCCAGCCAAAAGCAGCAAGCGGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: QQHYKKPNHEVY*SLSSQKQQAAD Trigger: ATCTGCCGCTTGCTGCTTTTGGCTGGACAGGGACCAATAAACTTCATGATTCGGCTTTTTGTAGTGTTGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS CCA 72 bp | TCCAAACCAGATGATAACAAATACTTCTGCGAATTCTaGGCCTCCGCCATCATTCTTCCCATCAATGGAACT | + |
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Preference number: 6 (lower is better) Translates to: SKPDDNKYFCEF*ASAIILPINGT Trigger: AGTTCCATTGATGGGAAGAATGATGGCGGAGGCCCAGAATTCGCAGAAGTATTTGTTATCATCTGGTTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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| CDS TCA 72 bp | AAGCGAACATCAACAACACTACAAAAAGCCGAATCATaGAGTTTATTGGTCCCTGTCCAGCCAAAAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: KRTSTTLQKAES*SLLVPVQPKAA Trigger: TGCTGCTTTTGGCTGGACAGGGACCAATAAACTTCATGATTCGGCTTTTTGTAGTGTTGTTGATGTTCGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000054697.7 ENSMUST00000113811.8 ENSMUST00000151353.8 |
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