Pregenerated sensors for YIPF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024072Ensembl transcript IDs: ENSMUST00000024873.7, ENSMUST00000234432.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CTGGCCTTTAATTCAGGTATCTCTCTGCCTCTGCTTTTCAAGTGCTaGGGTCGAAGGGGTTCATCACCAGGTATTTCCATGTCTATATCG | + |
Preference number: 1 (lower is better) Translates to: LAFNSGISLPLLFKC*GRRGSSPGISMSIS Trigger: CGATATAGACATGGAAATACCTGGTGATGAACCCCTTCGACCCCAGCACTTGAAAAGCAGAGGCAGAGAGATACCTGAATTAAAGGCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR CCA 90 bp | GAAGTCAGGATTGTCTCTCACCACCTGTCTATTAAAACCCAGCGATaGCATTGGCATCAGAACACAGCGGATCTTGTAGTAAATGTCCTT | + |
Preference number: 1 (lower is better) Translates to: EVRIVSHHLSIKTQR*HWHQNTADLVVNVL Trigger: AAGGACATTTACTACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAGGTGGTGAGAGACAATCCTGACTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR TCA 90 bp | TCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTTaGTTCATGTACAACTTGGATCACACTCCAGTATATAAGGACAAA | + |
Preference number: 1 (lower is better) Translates to: SSKNSQRNTNVTPSF*FMYNLDHTPVYKDK Trigger: TTTGTCCTTATATACTGGAGTGTGATCCAAGTTGTACATGAATCAAAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR GCA 90 bp | CTGTCTATTAAAACCCAGCGATGGCATTGGCATCAGAACACAGCGGATCTTGTAAACTCCCCATCCAGGTaGTTTTGGCACAAGTGTTCA | + |
Preference number: 2 (lower is better) Translates to: LSIKTQRWHWHQNTADLVNSPSR*FWHKCS Trigger: TGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTT...TACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CCA 90 bp | AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACCCATCCAGGTGCTTTTaGCACAAGTGTTCAGGTGAA | + |
Preference number: 2 (lower is better) Translates to: NTTPHPGAFGTSVQVNIDPSRCF*HKCSGE Trigger: TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGG...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000024873.7 ENSMUST00000234432.2 |
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3UTR-3UTR CCA 90 bp | CATGTGAAACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAAATTAAAACCCAGCGATaGCATTGGCATCAGAACACA | + |
Preference number: 2 (lower is better) Translates to: HVKHNSPSRCFWHKCSGEIKTQR*HWHQNT Trigger: TGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAAT...TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTTTCACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CCA 90 bp | CATGTGAAACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAACTGTGTAGTCTAAGCTaGCCTTTAATTCAGGTATCT | + |
Preference number: 2 (lower is better) Translates to: HVKHNSPSRCFWHKCSGELCSLS*PLIQVS Trigger: AGATACCTGAATTAAAGGCCAGCTTAGACTACACAG...TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTTTCACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR GCA 90 bp | ACTTGGCCATATGCAACTTCTCCACCAAGAACTCTAGCCAGTAAGAAAATTGTCTTTGACATCTGGAGCTaGTATAGAACCGCTGAGATG | + |
Preference number: 2 (lower is better) Translates to: TWPYATSPPRTLASKKIVFDIWS*YRTAEM Trigger: CATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAA...GACAATTTTCTTACTGGCTAGAGTTCTTGGTGGAGAAGTTGCATATGGCCAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CCA 90 bp | CATGTGAAACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATCTACAGGATCTGTaGTGCCAGAGAAAATTCTTT | + |
Preference number: 2 (lower is better) Translates to: HVKHNSPSRCFWHKCSGEYLQDL*CQRKFF Trigger: AAAGAATTTTCTCTGGCACCACAGATCCTGTAGATA...TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTTTCACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000024873.7 ENSMUST00000234432.2 |
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3UTR-3UTR GCA 90 bp | ACATTCAAAACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGGTATCTCTCTGCCTCTaGTTTTCAAGTGCTGGGGTC | + |
Preference number: 2 (lower is better) Translates to: TFKTVFLRAHTHSPNLYQVSLCL*FSSAGV Trigger: GACCCCAGCACTTGAAAAGCAGAGGCAGAGAGATAC...CTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTTTTGAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR CAA 90 bp | GCTGTAGATTCTTTGATGAAATCTCCGCTTACACCGAGGTTTAATTaGACATCTGGAGCTGCTATAGAACCGCTGAGATGTTCATCTTTA | + |
Preference number: 2 (lower is better) Translates to: AVDSLMKSPLTPRFN*TSGAAIEPLRCSSL Trigger: TAAAGATGAACATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAATTAAACCTCGGTGTAAGCGGAGATTTCATCAAAGAATCTACAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CCA 90 bp | AACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTCCATCCAGGTGCTTTTaGCACAAGTGTTCAGGTGAA | + |
Preference number: 2 (lower is better) Translates to: NCFLKSTHTQSKSIPATIPSRCF*HKCSGE Trigger: TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGG...AATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024873.7 ENSMUST00000234432.2 |
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3UTR-3UTR GCA 90 bp | CGATGTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAATTGCTAACAGGGATTTaGTATTTTGTAGACACAGAT | + |
Preference number: 2 (lower is better) Translates to: RCHTISGTEVNLLGAMSELLTGI*YFVDTD Trigger: ATCTGTGTCTACAAAATAGCAAATCCCTGTTAGCAA...TTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGACATCG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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3UTR-3UTR GCA 90 bp | AACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTATTCAGGTATCTCTCTaGCTCTGCTTTTCAAGTGCT | + |
Preference number: 2 (lower is better) Translates to: NCFLKSTHTQSKSIPATIIQVSL*LCFSSA Trigger: AGCACTTGAAAAGCAGAGGCAGAGAGATACCTGAAT...AATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR TCA 90 bp | TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTAAATGGTTATAATCCATaGGACCACCCTAAACTGTCC | + |
Preference number: 2 (lower is better) Translates to: FLKSTHTQSKSIPATIRLNGYNP*DHPKLS Trigger: GGACAGTTTAGGGTGGTCTCATGGATTATAACCATT...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR TCA 90 bp | AACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTTCTTTTCTACTTTGTTaGGACAGGGTTTCAGTATGT | + |
Preference number: 2 (lower is better) Translates to: NCFLKSTHTQSKSIPATISFLLC*DRVSVC Trigger: ACATACTGAAACCCTGTCTCAACAAAGTAGAAAAGA...AATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR TCA 90 bp | TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTAAATTTATACTTCATGTaGAACACAACTCCCCATCCA | + |
Preference number: 2 (lower is better) Translates to: FLKSTHTQSKSIPATIRLNLYFM*NTTPHP Trigger: TGGATGGGGAGTTGTGTTTCACATGAAGTATAAATT...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024873.7 ENSMUST00000234432.2 |
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3UTR CCA 72 bp | AATTCAGGTATCTCTCTGCCTCTGCTTTTCAAGTGCTaGGGTCGAAGGGGTTCATCACCAGGTATTTCCATG | + |
Preference number: 3 (lower is better) Translates to: NSGISLPLLFKC*GRRGSSPGISM Trigger: CATGGAAATACCTGGTGATGAACCCCTTCGACCCCAGCACTTGAAAAGCAGAGGCAGAGAGATACCTGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR CCA 72 bp | TCTCACCACCTGTCTATTAAAACCCAGCGATGGCATTaGCATCAGAACACAGCGGATCTTGTAGTAAATGTC | + |
Preference number: 3 (lower is better) Translates to: SHHLSIKTQRWH*HQNTADLVVNV Trigger: GACATTTACTACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAGGTGGTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR CCA 72 bp | ATTGTCTCTCACCACCTGTCTATTAAAACCCAGCGATaGCATTGGCATCAGAACACAGCGGATCTTGTAGTA | + |
Preference number: 3 (lower is better) Translates to: IVSHHLSIKTQR*HWHQNTADLVV Trigger: TACTACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAGGTGGTGAGAGACAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CAA 90 bp | CTGTCTATTAAAACCCAGCGATGGCATTGGCATCAGAACACAGCGGATCTTGTATCTTCCAAAAGTGGCTaGTTATCTTCAGGATCCTCA | + |
Preference number: 3 (lower is better) Translates to: LSIKTQRWHWHQNTADLVSSKSG*LSSGSS Trigger: TGAGGATCCTGAAGATAACAAGCCACTTTTGGAAGA...TACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR CCA 72 bp | AGAGGAAGTAATGAATATCCTATAACTCCAAGAACTTaGCCATATGCAACTTCTCCACCAAGAACTCTAGCC | + |
Preference number: 3 (lower is better) Translates to: RGSNEYPITPRT*PYATSPPRTLA Trigger: GGCTAGAGTTCTTGGTGGAGAAGTTGCATATGGCCAAGTTCTTGGAGTTATAGGATATTCATTACTTCCTCT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CAA 90 bp | ACTTGGCCATATGCAACTTCTCCACCAAGAACTCTAGCCAGTAAGAAAATTGTCGTAGCTGTAGATTCTTaGATGAAATCTCCGCTTACA | + |
Preference number: 3 (lower is better) Translates to: TWPYATSPPRTLASKKIVVAVDS*MKSPLT Trigger: TGTAAGCGGAGATTTCATCAAAGAATCTACAGCTAC...GACAATTTTCTTACTGGCTAGAGTTCTTGGTGGAGAAGTTGCATATGGCCAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CAA 90 bp | ACATTCAAAACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGAGGGGCTTTTTGGTCTaGAATTCTTCACCTACGAGT | + |
Preference number: 3 (lower is better) Translates to: TFKTVFLRAHTHSPNLYQRGFLV*NSSPTS Trigger: ACTCGTAGGTGAAGAATTCAAGACCAAAAAGCCCCT...CTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTTTTGAATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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3UTR-3UTR CAA 90 bp | GTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAAAGAAATATCTCTTGCTCCTTaGGTCAAAAAGATAAACAGG | + |
Preference number: 3 (lower is better) Translates to: VIPYQEQKLTFWGQCQKEISLAP*VKKINR Trigger: CCTGTTTATCTTTTTGACCAAAGGAGCAAGAGATAT...TTCTTTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CCA 90 bp | AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACATTAAAACCCAGCGATaGCATTGGCATCAGAACACA | + |
Preference number: 4 (lower is better) Translates to: NTTPHPGAFGTSVQVNIDIKTQR*HWHQNT Trigger: TGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAAT...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR TCA 90 bp | TCCAATCCCTCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTGGGGCTTTTTGGTCTTaGATTCTTCACCTACGAGTA | + |
Preference number: 4 (lower is better) Translates to: SNPSSKNSQRNTNVTPSFGAFWS*ILHLRV Trigger: TACTCGTAGGTGAAGAATTCAAGACCAAAAAGCCCC...AAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGAGGGATTGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR GCA 90 bp | TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTATTTGACATCTGGAGCTaGTATAGAACCGCTGAGATC | + |
Preference number: 4 (lower is better) Translates to: FLKSTHTQSKSIPATIRLFDIWS*YRTAEI Trigger: GATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAA...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CCA 90 bp | TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTAATAACTCCAAGAACTTaGCCATATGCAACTTCTCCA | + |
Preference number: 4 (lower is better) Translates to: FLKSTHTQSKSIPATIRLITPRT*PYATSP Trigger: TGGAGAAGTTGCATATGGCCAAGTTCTTGGAGTTAT...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CAA 90 bp | AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACCCAGCCATAGCCTCTTaGTCTCAGAAATGTAGTAGC | + |
Preference number: 5 (lower is better) Translates to: NTTPHPGAFGTSVQVNIDPAIAS*SQKCSS Trigger: GCTACTACATTTCTGAGACAAAGAGGCTATGGCTGG...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CAA 90 bp | CGATGTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAACCCCAGAAGTCAGGATaGTCTCTCACCACCTGTCTA | + |
Preference number: 5 (lower is better) Translates to: RCHTISGTEVNLLGAMSEPQKSG*SLTTCL Trigger: TAGACAGGTGGTGAGAGACAATCCTGACTTCTGGGG...TTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGACATCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CAA 90 bp | AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACTCTTCCAAAAGTGGCTaGTTATCTTCAGGATCCTCA | + |
Preference number: 5 (lower is better) Translates to: NTTPHPGAFGTSVQVNIDSSKSG*LSSGSS Trigger: TGAGGATCCTGAAGATAACAAGCCACTTTTGGAAGA...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CAA 90 bp | TCCAATCCCTCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTATGAGGAGGGGCTTTTaGGTCTTGAATTCTTCACCT | + |
Preference number: 5 (lower is better) Translates to: SNPSSKNSQRNTNVTPSFMRRGF*VLNSSP Trigger: AGGTGAAGAATTCAAGACCAAAAAGCCCCTCCTCAT...AAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGAGGGATTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CAA 90 bp | GTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAAAGAATATAACTCCAAGAACTaGGCCATATGCAACTTCTCC | + |
Preference number: 5 (lower is better) Translates to: VIPYQEQKLTFWGQCQKEYNSKN*AICNFS Trigger: GGAGAAGTTGCATATGGCCAAGTTCTTGGAGTTATA...TTCTTTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS-3UTR CAA 90 bp | TCCAATCCCTCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTGTAGCTGTAGATTCTTaGATGAAATCTCCGCTTACA | + |
Preference number: 5 (lower is better) Translates to: SNPSSKNSQRNTNVTPSFVAVDS*MKSPLT Trigger: TGTAAGCGGAGATTTCATCAAAGAATCTACAGCTAC...AAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGAGGGATTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |
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CDS TCA 72 bp | ATCTGGTCCCTTCCGCGTCCGCCGAAGACACAAAGGTaGAGTCCCCGTTGGCAGGCGCATAGGCCGGGGGCG | + |
Preference number: 6 (lower is better) Translates to: IWSLPRPPKTQR*SPRWQAHRPGA Trigger: CGCCCCCGGCCTATGCGCCTGCCAACGGGGACTTCACCTTTGTGTCTTCGGCGGACGCGGAAGGGACCAGAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000234432.2 |
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CDS CAA 90 bp | GCTGTAGATTCTTTGATGAAATCTCCGCTTACACCGAGGTTTAATTaGACATCTGGAGCTGCTATAGAACCGCTGAGATCTTCCGCGTCC | + |
Preference number: 6 (lower is better) Translates to: AVDSLMKSPLTPRFN*TSGAAIEPLRSSAS Trigger: GGACGCGGAAGATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAATTAAACCTCGGTGTAAGCGGAGATTTCATCAAAGAATCTACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024873.7 |