RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for YIPF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024072

Ensembl transcript IDs: ENSMUST00000024873.7, ENSMUST00000234432.2

Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGCCTTTAATTCAGGTATCTCTCTGCCTCTGCTTTTCAAGTGCTaGGGTCGAAGGGGTTCATCACCAGGTATTTCCATGTCTATATCG +
Preference number: 1 (lower is better)
Translates to: LAFNSGISLPLLFKC*GRRGSSPGISMSIS
Trigger: CGATATAGACATGGAAATACCTGGTGATGAACCCCTTCGACCCCAGCACTTGAAAAGCAGAGGCAGAGAGATACCTGAATTAAAGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR CCA 90 bp GAAGTCAGGATTGTCTCTCACCACCTGTCTATTAAAACCCAGCGATaGCATTGGCATCAGAACACAGCGGATCTTGTAGTAAATGTCCTT +
Preference number: 1 (lower is better)
Translates to: EVRIVSHHLSIKTQR*HWHQNTADLVVNVL
Trigger: AAGGACATTTACTACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAGGTGGTGAGAGACAATCCTGACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR TCA 90 bp TCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTTaGTTCATGTACAACTTGGATCACACTCCAGTATATAAGGACAAA +
Preference number: 1 (lower is better)
Translates to: SSKNSQRNTNVTPSF*FMYNLDHTPVYKDK
Trigger: TTTGTCCTTATATACTGGAGTGTGATCCAAGTTGTACATGAATCAAAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR GCA 90 bp CTGTCTATTAAAACCCAGCGATGGCATTGGCATCAGAACACAGCGGATCTTGTAAACTCCCCATCCAGGTaGTTTTGGCACAAGTGTTCA +
Preference number: 2 (lower is better)
Translates to: LSIKTQRWHWHQNTADLVNSPSR*FWHKCS
Trigger: TGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTT...TACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CCA 90 bp AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACCCATCCAGGTGCTTTTaGCACAAGTGTTCAGGTGAA +
Preference number: 2 (lower is better)
Translates to: NTTPHPGAFGTSVQVNIDPSRCF*HKCSGE
Trigger: TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGG...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024873.7
ENSMUST00000234432.2
3UTR-3UTR CCA 90 bp CATGTGAAACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAAATTAAAACCCAGCGATaGCATTGGCATCAGAACACA +
Preference number: 2 (lower is better)
Translates to: HVKHNSPSRCFWHKCSGEIKTQR*HWHQNT
Trigger: TGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAAT...TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTTTCACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CCA 90 bp CATGTGAAACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAACTGTGTAGTCTAAGCTaGCCTTTAATTCAGGTATCT +
Preference number: 2 (lower is better)
Translates to: HVKHNSPSRCFWHKCSGELCSLS*PLIQVS
Trigger: AGATACCTGAATTAAAGGCCAGCTTAGACTACACAG...TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTTTCACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR GCA 90 bp ACTTGGCCATATGCAACTTCTCCACCAAGAACTCTAGCCAGTAAGAAAATTGTCTTTGACATCTGGAGCTaGTATAGAACCGCTGAGATG +
Preference number: 2 (lower is better)
Translates to: TWPYATSPPRTLASKKIVFDIWS*YRTAEM
Trigger: CATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAA...GACAATTTTCTTACTGGCTAGAGTTCTTGGTGGAGAAGTTGCATATGGCCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CCA 90 bp CATGTGAAACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATCTACAGGATCTGTaGTGCCAGAGAAAATTCTTT +
Preference number: 2 (lower is better)
Translates to: HVKHNSPSRCFWHKCSGEYLQDL*CQRKFF
Trigger: AAAGAATTTTCTCTGGCACCACAGATCCTGTAGATA...TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTTTCACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024873.7
ENSMUST00000234432.2
3UTR-3UTR GCA 90 bp ACATTCAAAACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGGTATCTCTCTGCCTCTaGTTTTCAAGTGCTGGGGTC +
Preference number: 2 (lower is better)
Translates to: TFKTVFLRAHTHSPNLYQVSLCL*FSSAGV
Trigger: GACCCCAGCACTTGAAAAGCAGAGGCAGAGAGATAC...CTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTTTTGAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR CAA 90 bp GCTGTAGATTCTTTGATGAAATCTCCGCTTACACCGAGGTTTAATTaGACATCTGGAGCTGCTATAGAACCGCTGAGATGTTCATCTTTA +
Preference number: 2 (lower is better)
Translates to: AVDSLMKSPLTPRFN*TSGAAIEPLRCSSL
Trigger: TAAAGATGAACATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAATTAAACCTCGGTGTAAGCGGAGATTTCATCAAAGAATCTACAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CCA 90 bp AACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTCCATCCAGGTGCTTTTaGCACAAGTGTTCAGGTGAA +
Preference number: 2 (lower is better)
Translates to: NCFLKSTHTQSKSIPATIPSRCF*HKCSGE
Trigger: TTCACCTGAACACTTGTGCCAAAAGCACCTGGATGG...AATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024873.7
ENSMUST00000234432.2
3UTR-3UTR GCA 90 bp CGATGTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAATTGCTAACAGGGATTTaGTATTTTGTAGACACAGAT +
Preference number: 2 (lower is better)
Translates to: RCHTISGTEVNLLGAMSELLTGI*YFVDTD
Trigger: ATCTGTGTCTACAAAATAGCAAATCCCTGTTAGCAA...TTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGACATCG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
3UTR-3UTR GCA 90 bp AACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTATTCAGGTATCTCTCTaGCTCTGCTTTTCAAGTGCT +
Preference number: 2 (lower is better)
Translates to: NCFLKSTHTQSKSIPATIIQVSL*LCFSSA
Trigger: AGCACTTGAAAAGCAGAGGCAGAGAGATACCTGAAT...AATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR TCA 90 bp TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTAAATGGTTATAATCCATaGGACCACCCTAAACTGTCC +
Preference number: 2 (lower is better)
Translates to: FLKSTHTQSKSIPATIRLNGYNP*DHPKLS
Trigger: GGACAGTTTAGGGTGGTCTCATGGATTATAACCATT...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR TCA 90 bp AACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTTCTTTTCTACTTTGTTaGGACAGGGTTTCAGTATGT +
Preference number: 2 (lower is better)
Translates to: NCFLKSTHTQSKSIPATISFLLC*DRVSVC
Trigger: ACATACTGAAACCCTGTCTCAACAAAGTAGAAAAGA...AATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR TCA 90 bp TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTAAATTTATACTTCATGTaGAACACAACTCCCCATCCA +
Preference number: 2 (lower is better)
Translates to: FLKSTHTQSKSIPATIRLNLYFM*NTTPHP
Trigger: TGGATGGGGAGTTGTGTTTCACATGAAGTATAAATT...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024873.7
ENSMUST00000234432.2
3UTR CCA 72 bp AATTCAGGTATCTCTCTGCCTCTGCTTTTCAAGTGCTaGGGTCGAAGGGGTTCATCACCAGGTATTTCCATG +
Preference number: 3 (lower is better)
Translates to: NSGISLPLLFKC*GRRGSSPGISM
Trigger: CATGGAAATACCTGGTGATGAACCCCTTCGACCCCAGCACTTGAAAAGCAGAGGCAGAGAGATACCTGAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR CCA 72 bp TCTCACCACCTGTCTATTAAAACCCAGCGATGGCATTaGCATCAGAACACAGCGGATCTTGTAGTAAATGTC +
Preference number: 3 (lower is better)
Translates to: SHHLSIKTQRWH*HQNTADLVVNV
Trigger: GACATTTACTACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAGGTGGTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR CCA 72 bp ATTGTCTCTCACCACCTGTCTATTAAAACCCAGCGATaGCATTGGCATCAGAACACAGCGGATCTTGTAGTA +
Preference number: 3 (lower is better)
Translates to: IVSHHLSIKTQR*HWHQNTADLVV
Trigger: TACTACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAGGTGGTGAGAGACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CAA 90 bp CTGTCTATTAAAACCCAGCGATGGCATTGGCATCAGAACACAGCGGATCTTGTATCTTCCAAAAGTGGCTaGTTATCTTCAGGATCCTCA +
Preference number: 3 (lower is better)
Translates to: LSIKTQRWHWHQNTADLVSSKSG*LSSGSS
Trigger: TGAGGATCCTGAAGATAACAAGCCACTTTTGGAAGA...TACAAGATCCGCTGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAATAGACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR CCA 72 bp AGAGGAAGTAATGAATATCCTATAACTCCAAGAACTTaGCCATATGCAACTTCTCCACCAAGAACTCTAGCC +
Preference number: 3 (lower is better)
Translates to: RGSNEYPITPRT*PYATSPPRTLA
Trigger: GGCTAGAGTTCTTGGTGGAGAAGTTGCATATGGCCAAGTTCTTGGAGTTATAGGATATTCATTACTTCCTCT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CAA 90 bp ACTTGGCCATATGCAACTTCTCCACCAAGAACTCTAGCCAGTAAGAAAATTGTCGTAGCTGTAGATTCTTaGATGAAATCTCCGCTTACA +
Preference number: 3 (lower is better)
Translates to: TWPYATSPPRTLASKKIVVAVDS*MKSPLT
Trigger: TGTAAGCGGAGATTTCATCAAAGAATCTACAGCTAC...GACAATTTTCTTACTGGCTAGAGTTCTTGGTGGAGAAGTTGCATATGGCCAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CAA 90 bp ACATTCAAAACTGTTTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGAGGGGCTTTTTGGTCTaGAATTCTTCACCTACGAGT +
Preference number: 3 (lower is better)
Translates to: TFKTVFLRAHTHSPNLYQRGFLV*NSSPTS
Trigger: ACTCGTAGGTGAAGAATTCAAGACCAAAAAGCCCCT...CTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAAACAGTTTTGAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
3UTR-3UTR CAA 90 bp GTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAAAGAAATATCTCTTGCTCCTTaGGTCAAAAAGATAAACAGG +
Preference number: 3 (lower is better)
Translates to: VIPYQEQKLTFWGQCQKEISLAP*VKKINR
Trigger: CCTGTTTATCTTTTTGACCAAAGGAGCAAGAGATAT...TTCTTTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CCA 90 bp AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACATTAAAACCCAGCGATaGCATTGGCATCAGAACACA +
Preference number: 4 (lower is better)
Translates to: NTTPHPGAFGTSVQVNIDIKTQR*HWHQNT
Trigger: TGTGTTCTGATGCCAATGCCATCGCTGGGTTTTAAT...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR TCA 90 bp TCCAATCCCTCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTGGGGCTTTTTGGTCTTaGATTCTTCACCTACGAGTA +
Preference number: 4 (lower is better)
Translates to: SNPSSKNSQRNTNVTPSFGAFWS*ILHLRV
Trigger: TACTCGTAGGTGAAGAATTCAAGACCAAAAAGCCCC...AAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGAGGGATTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR GCA 90 bp TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTATTTGACATCTGGAGCTaGTATAGAACCGCTGAGATC +
Preference number: 4 (lower is better)
Translates to: FLKSTHTQSKSIPATIRLFDIWS*YRTAEI
Trigger: GATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAA...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CCA 90 bp TTTCTTAAGAGCACACACACACAGTCCAAATCTATACCAGCAACTATTAGATTAATAACTCCAAGAACTTaGCCATATGCAACTTCTCCA +
Preference number: 4 (lower is better)
Translates to: FLKSTHTQSKSIPATIRLITPRT*PYATSP
Trigger: TGGAGAAGTTGCATATGGCCAAGTTCTTGGAGTTAT...TAATCTAATAGTTGCTGGTATAGATTTGGACTGTGTGTGTGTGCTCTTAAGAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CAA 90 bp AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACCCAGCCATAGCCTCTTaGTCTCAGAAATGTAGTAGC +
Preference number: 5 (lower is better)
Translates to: NTTPHPGAFGTSVQVNIDPAIAS*SQKCSS
Trigger: GCTACTACATTTCTGAGACAAAGAGGCTATGGCTGG...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CAA 90 bp CGATGTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAACCCCAGAAGTCAGGATaGTCTCTCACCACCTGTCTA +
Preference number: 5 (lower is better)
Translates to: RCHTISGTEVNLLGAMSEPQKSG*SLTTCL
Trigger: TAGACAGGTGGTGAGAGACAATCCTGACTTCTGGGG...TTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGACATCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CAA 90 bp AACACAACTCCCCATCCAGGTGCTTTTGGCACAAGTGTTCAGGTGAATATTGACTCTTCCAAAAGTGGCTaGTTATCTTCAGGATCCTCA +
Preference number: 5 (lower is better)
Translates to: NTTPHPGAFGTSVQVNIDSSKSG*LSSGSS
Trigger: TGAGGATCCTGAAGATAACAAGCCACTTTTGGAAGA...GTCAATATTCACCTGAACACTTGTGCCAAAAGCACCTGGATGGGGAGTTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CAA 90 bp TCCAATCCCTCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTATGAGGAGGGGCTTTTaGGTCTTGAATTCTTCACCT +
Preference number: 5 (lower is better)
Translates to: SNPSSKNSQRNTNVTPSFMRRGF*VLNSSP
Trigger: AGGTGAAGAATTCAAGACCAAAAAGCCCCTCCTCAT...AAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGAGGGATTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CAA 90 bp GTCATACCATATCAGGAACAGAAGTTAACCTTTTGGGGGCAATGTCAGAAAGAATATAACTCCAAGAACTaGGCCATATGCAACTTCTCC +
Preference number: 5 (lower is better)
Translates to: VIPYQEQKLTFWGQCQKEYNSKN*AICNFS
Trigger: GGAGAAGTTGCATATGGCCAAGTTCTTGGAGTTATA...TTCTTTCTGACATTGCCCCCAAAAGGTTAACTTCTGTTCCTGATATGGTATGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS-3UTR CAA 90 bp TCCAATCCCTCCAGCAAGAATTCCCAGCGTAATACAAATGTAACACCATCTTTTGTAGCTGTAGATTCTTaGATGAAATCTCCGCTTACA +
Preference number: 5 (lower is better)
Translates to: SNPSSKNSQRNTNVTPSFVAVDS*MKSPLT
Trigger: TGTAAGCGGAGATTTCATCAAAGAATCTACAGCTAC...AAAAGATGGTGTTACATTTGTATTACGCTGGGAATTCTTGCTGGAGGGATTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7
CDS TCA 72 bp ATCTGGTCCCTTCCGCGTCCGCCGAAGACACAAAGGTaGAGTCCCCGTTGGCAGGCGCATAGGCCGGGGGCG +
Preference number: 6 (lower is better)
Translates to: IWSLPRPPKTQR*SPRWQAHRPGA
Trigger: CGCCCCCGGCCTATGCGCCTGCCAACGGGGACTTCACCTTTGTGTCTTCGGCGGACGCGGAAGGGACCAGAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234432.2
CDS CAA 90 bp GCTGTAGATTCTTTGATGAAATCTCCGCTTACACCGAGGTTTAATTaGACATCTGGAGCTGCTATAGAACCGCTGAGATCTTCCGCGTCC +
Preference number: 6 (lower is better)
Translates to: AVDSLMKSPLTPRFN*TSGAAIEPLRSSAS
Trigger: GGACGCGGAAGATCTCAGCGGTTCTATAGCAGCTCCAGATGTCAAATTAAACCTCGGTGTAAGCGGAGATTTCATCAAAGAATCTACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024873.7