Pregenerated sensors for YIPF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057375Ensembl transcript IDs: ENSMUST00000075693.12, ENSMUST00000128284.8, ENSMUST00000139527.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATCAGTTTCCTGCTGATGCTGGCCATTCTGCATTCCAGTAGTGGATaGTGTGTCCAGAAGAGCCATAACTCCCCATCAGTTAGAGAGCCT | + |
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Preference number: 1 (lower is better) Translates to: ISFLLMLAILHSSSG*CVQKSHNSPSVREP Trigger: AGGCTCTCTAACTGATGGGGAGTTATGGCTCTTCTGGACACAGCATCCACTACTGGAATGCAGAATGGCCAGCATCAGCAGGAAACTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| 3UTR GCA 90 bp | TTTACTTTCAGGGCCCCACACATGCGAGGCAAGTGTTCTATCACGTaGCTGATACCCCCAGACCAACACTTAATTCTTGATAGATGGGTG | + |
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Preference number: 1 (lower is better) Translates to: FTFRAPHMRGKCSIT*LIPPDQHLILDRWV Trigger: CACCCATCTATCAAGAATTAAGTGTTGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCCCTGAAAGTAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| 3UTR-3UTR TCA 90 bp | GGCCCCACACATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACCATTCTTGATAGATGGGTaGTGGGGTTTCAGGGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: GPTHARQVFYHVPDTPRPFLIDG*WGFRAR Trigger: CCTGGCCCTGAAACCCCATCACCCATCTATCAAGAA...TGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| 3UTR-3UTR GCA 90 bp | CATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACCAACACTTAATCATTCCAGTAGTGGATaGTGTGTCCAGAAGAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: HARQVFYHVPDTPRPTLNHSSSG*CVQKSH Trigger: ATGGCTCTTCTGGACACAGCATCCACTACTGGAATG...ATTAAGTGTTGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| 3UTR GCA 72 bp | CTGCTGATGCTGGCCATTCTGCATTCCAGTAGTGGATaGTGTGTCCAGAAGAGCCATAACTCCCCATCAGTT | + |
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Preference number: 3 (lower is better) Translates to: LLMLAILHSSSG*CVQKSHNSPSV Trigger: AACTGATGGGGAGTTATGGCTCTTCTGGACACAGCATCCACTACTGGAATGCAGAATGGCCAGCATCAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| 3UTR GCA 72 bp | AGGGCCCCACACATGCGAGGCAAGTGTTCTATCACGTaGCTGATACCCCCAGACCAACACTTAATTCTTGAT | + |
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Preference number: 3 (lower is better) Translates to: RAPHMRGKCSIT*LIPPDQHLILD Trigger: ATCAAGAATTAAGTGTTGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| 3UTR CCA 72 bp | CTGATACCCCCAGACCAACACTTAATTCTTGATAGATaGGTGATGGGGTTTCAGGGCCAGGACAATCAGTTT | + |
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Preference number: 3 (lower is better) Translates to: LIPPDQHLILDR*VMGFQGQDNQF Trigger: AAACTGATTGTCCTGGCCCTGAAACCCCATCACCCATCTATCAAGAATTAAGTGTTGGTCTGGGGGTATCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR TCA 90 bp | GGCCCCACACATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACCACGCCCAGGGCAATCATaGCAAGGACCCAACGAACAA | + |
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Preference number: 4 (lower is better) Translates to: GPTHARQVFYHVPDTPRPRPGQS*QGPNEQ Trigger: TTGTTCGTTGGGTCCTTGTCATGATTGCCCTGGGCG...TGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR GCA 90 bp | GGCCCCACACATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACCACATAGAGATCTGGATTaGTGCGGATGTACAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: GPTHARQVFYHVPDTPRPHRDLD*CGCTAS Trigger: TGAGGCTGTACATCCGCAGCAATCCAGATCTCTATG...TGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | GGCCCCACACATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACCATGGCAAAGACCAACGTaGCACATATCCAAAAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: GPTHARQVFYHVPDTPRPWQRPT*HISKRD Trigger: GTCCCTTTTGGATATGTGCCACGTTGGTCTTTGCCA...TGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR TCA 90 bp | TTCAGGGCCAGGACAATCAGTTTCCTGCTGATGCTGGCCATTCTGCATTCCAGTTACCAACACAGAGCCTaGGACGCCCAGGGCAATCAT | + |
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Preference number: 4 (lower is better) Translates to: FRARTISFLLMLAILHSSYQHRA*DAQGNH Trigger: ATGATTGCCCTGGGCGTCTCAGGCTCTGTGTTGGTA...ACTGGAATGCAGAATGGCCAGCATCAGCAGGAAACTGATTGTCCTGGCCCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | ATCACTGCACTTTACTTTCAGGGCCCCACACATGCGAGGCAAGTGTTCTATCACCGATTGTCACAATGGTaGCCAAGGCGACACGCCGGT | + |
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Preference number: 4 (lower is better) Translates to: ITALYFQGPTHARQVFYHRLSQW*PRRHAG Trigger: ACCGGCGTGTCGCCTTGGCCACCATTGTGACAATCG...GTGATAGAACACTTGCCTCGCATGTGTGGGGCCCTGAAAGTAAAGTGCAGTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | AGGGCCAGGACAATCAGTTTCCTGCTGATGCTGGCCATTCTGCATTCCAGTAGTACACGATTGTCACAATaGTGGCCAAGGCGACACGCC | + |
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Preference number: 4 (lower is better) Translates to: RARTISFLLMLAILHSSSTRLSQ*WPRRHA Trigger: GGCGTGTCGCCTTGGCCACCATTGTGACAATCGTGT...ACTACTGGAATGCAGAATGGCCAGCATCAGCAGGAAACTGATTGTCCTGGCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR TCA 90 bp | TATCACTGCACTTTACTTTCAGGGCCCCACACATGCGAGGCAAGTGTTCTATCACAACCCTCTGGGGAATaGTCCACAGGACTGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: YHCTLLSGPHTCEASVLSQPSGE*STGLLW Trigger: CCACAGCAGTCCTGTGGATCATTCCCCAGAGGGTTG...TGATAGAACACTTGCCTCGCATGTGTGGGGCCCTGAAAGTAAAGTGCAGTGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR GCA 90 bp | GGCCCCACACATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACCAAAGGTTCCCACTAATTaGTATGGCAAAGACCAACGT | + |
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Preference number: 4 (lower is better) Translates to: GPTHARQVFYHVPDTPRPKVPTN*YGKDQR Trigger: ACGTTGGTCTTTGCCATAGCAATTAGTGGGAACCTT...TGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | AGGGCCCCACACATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACGTCTTCTCTCCCAGATaGATTAGGAAGTTAGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: RAPHMRGKCSITCLIPPDVFSPR*IRKLER Trigger: CCTTTCTAACTTCCTAATCCATCTGGGAGAGAAGAC...GTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGTGGGGCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | CCAGTAGTGGATGCTGTGTCCAGAAGAGCCATAACTCCCCATCAGTTAGAGAGCGGGACCATAGAGATCTaGATTGCTGCGGATGTACAG | + |
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Preference number: 4 (lower is better) Translates to: PVVDAVSRRAITPHQLESGTIEI*IAADVQ Trigger: CTGTACATCCGCAGCAATCCAGATCTCTATGGTCCC...GCTCTCTAACTGATGGGGAGTTATGGCTCTTCTGGACACAGCATCCACTACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | AGAAGAGCCATAACTCCCCATCAGTTAGAGAGCCTGAGAGATGAAATGCCACCAATAGCTGCTGGGAGGTaGTCCATCTCTGGAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: RRAITPHQLESLRDEMPPIAAGR*SISGAS Trigger: TGATGCTCCAGAGATGGACCACCTCCCAGCAGCTAT...TGGTGGCATTTCATCTCTCAGGCTCTCTAACTGATGGGGAGTTATGGCTCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR GCA 90 bp | TTCTGCATTCCAGTAGTGGATGCTGTGTCCAGAAGAGCCATAACTCCCCATCAGCCATGCTCATCACTTTaGTGTTTCTCCACAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: FCIPVVDAVSRRAITPHQPCSSL*CFSTGG Trigger: TCCTCCTGTGGAGAAACAGCAAAGTGATGAGCATGG...CTGATGGGGAGTTATGGCTCTTCTGGACACAGCATCCACTACTGGAATGCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR GCA 90 bp | CTGCTGATGCTGGCCATTCTGCATTCCAGTAGTGGATGCTGTGTCCAGAAGAGCAATGATCCACAGGACTaGTGTGGGGATATAGATGAA | + |
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Preference number: 4 (lower is better) Translates to: LLMLAILHSSSGCCVQKSNDPQD*CGDIDE Trigger: TTCATCTATATCCCCACAGCAGTCCTGTGGATCATT...GCTCTTCTGGACACAGCATCCACTACTGGAATGCAGAATGGCCAGCATCAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | TGGGGTTTCAGGGCCAGGACAATCAGTTTCCTGCTGATGCTGGCCATTCTGCATATCCTCACGAACAGCTaGCCAAAATGTCATTACCAA | + |
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Preference number: 4 (lower is better) Translates to: WGFRARTISFLLMLAILHILTNS*PKCHYQ Trigger: TTGGTAATGACATTTTGGCCAGCTGTTCGTGAGGAT...ATGCAGAATGGCCAGCATCAGCAGGAAACTGATTGTCCTGGCCCTGAAACCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR GCA 90 bp | ACAATCAGTTTCCTGCTGATGCTGGCCATTCTGCATTCCAGTAGTGGATGCTGTAGAGATCTGGATTGCTaGGGATGTACAGCCTCACAA | + |
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Preference number: 4 (lower is better) Translates to: TISFLLMLAILHSSSGCCRDLDC*GCTASQ Trigger: TTGTGAGGCTGTACATCCGCAGCAATCCAGATCTCT...ACAGCATCCACTACTGGAATGCAGAATGGCCAGCATCAGCAGGAAACTGATTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR CCA 90 bp | TTCTGCATTCCAGTAGTGGATGCTGTGTCCAGAAGAGCCATAACTCCCCATCAGGGCCAAAAGATACACTaGGGTCCTCAATGTTTATCG | + |
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Preference number: 4 (lower is better) Translates to: FCIPVVDAVSRRAITPHQGQKIH*GPQCLS Trigger: CGATAAACATTGAGGACCCCAGTGTATCTTTTGGCC...CTGATGGGGAGTTATGGCTCTTCTGGACACAGCATCCACTACTGGAATGCAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS-3UTR GCA 90 bp | ACACATGCGAGGCAAGTGTTCTATCACGTGCCTGATACCCCCAGACCAACACTTAGGAATAGGAAACCATaGTCATCACTTTGCTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: THARQVFYHVPDTPRPTLRNRKP*SSLCCF Trigger: GAAACAGCAAAGTGATGAGCATGGTTTCCTATTCCT...AAGTGTTGGTCTGGGGGTATCAGGCACGTGATAGAACACTTGCCTCGCATGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS CCA 90 bp | AGCAGCCCACAGAGAGCAGCACATGAAGCAACACGATTGTCACAATaGTGGCCAAGGCGACACGCCGGTTATCCTCACGAACAGCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: SSPQRAAHEATRLSQ*WPRRHAGYPHEQLA Trigger: GGCCAGCTGTTCGTGAGGATAACCGGCGTGTCGCCTTGGCCACCATTGTGACAATCGTGTTGCTTCATGTGCTGCTCTCTGTGGGCTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS CCA 90 bp | AGCCCACAGAGAGCAGCACATGAAGCAACACGATTGTCACAATGGTaGCCAAGGCGACACGCCGGTTATCCTCACGAACAGCTGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SPQRAAHEATRLSQW*PRRHAGYPHEQLAK Trigger: TTTGGCCAGCTGTTCGTGAGGATAACCGGCGTGTCGCCTTGGCCACCATTGTGACAATCGTGTTGCTTCATGTGCTGCTCTCTGTGGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS CCA 90 bp | TGTCTGGTTGGGAGTGGTTATAGCTGCTGGGAGGTGGTCCATCTCTaGAGCATCAAAGAAGTAAGCCAAGCAGCCCACAGAGAGCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: CLVGSGYSCWEVVHL*SIKEVSQAAHREQH Trigger: GTGCTGCTCTCTGTGGGCTGCTTGGCTTACTTCTTTGATGCTCCAGAGATGGACCACCTCCCAGCAGCTATAACCACTCCCAACCAGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS GCA 90 bp | GACAAGGACCCAACGAACAACCCTCTGGGGAATGATCCACAGGACTaGTGTGGGGATATAGATGAACAGCGAGTAGCCGTAGACACACAC | + |
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Preference number: 5 (lower is better) Translates to: DKDPTNNPLGNDPQD*CGDIDEQRVAVDTH Trigger: GTGTGTGTCTACGGCTACTCGCTGTTCATCTATATCCCCACAGCAGTCCTGTGGATCATTCCCCAGAGGGTTGTTCGTTGGGTCCTTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075693.12 ENSMUST00000128284.8 ENSMUST00000139527.8 |
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| CDS TCA 90 bp | ATCCTCACGAACAGCTGGCCAAAATGTCATTACCAACACAGAGCCTaGGACGCCCAGGGCAATCATGACAAGGACCCAACGAACAACCCT | + |
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Preference number: 5 (lower is better) Translates to: ILTNSWPKCHYQHRA*DAQGNHDKDPTNNP Trigger: AGGGTTGTTCGTTGGGTCCTTGTCATGATTGCCCTGGGCGTCTCAGGCTCTGTGTTGGTAATGACATTTTGGCCAGCTGTTCGTGAGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS GCA 90 bp | GCTGGATTTGGCCGCTGTTACTGTCTGGTTGGGAGTGGTTATAGCTaGTGGGAGGTGGTCCATCTCTGGAGCATCAAAGAAGTAAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: AGFGRCYCLVGSGYS*WEVVHLWSIKEVSQ Trigger: TTGGCTTACTTCTTTGATGCTCCAGAGATGGACCACCTCCCAGCAGCTATAACCACTCCCAACCAGACAGTAACAGCGGCCAAATCCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS CCA 90 bp | GGATTTGGCCGCTGTTACTGTCTGGTTGGGAGTGGTTATAGCTGCTaGGAGGTGGTCCATCTCTGGAGCATCAAAGAAGTAAGCCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: GFGRCYCLVGSGYSC*EVVHLWSIKEVSQA Trigger: TGCTTGGCTTACTTCTTTGATGCTCCAGAGATGGACCACCTCCCAGCAGCTATAACCACTCCCAACCAGACAGTAACAGCGGCCAAATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS TCA 72 bp | GGCATAGATGACAGTCGCTGCGATAGACACTGTGGGTaGCAGGGCGGTTCCATCTTTCTGGAATTCGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GIDDSRCDRHCG*QGGSIFLEFGH Trigger: GTGCCCGAATTCCAGAAAGATGGAACCGCCCTGTCACCCACAGTGTCTATCGCAGCGACTGTCATCTATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128284.8 |
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| CDS CAA 72 bp | AGCAGCCCACAGAGAGCAGCACATGAAGCAACACGATaGTCACAATGGTGGCCAAGGCGACACGCCGGTTAT | + |
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Preference number: 6 (lower is better) Translates to: SSPQRAAHEATR*SQWWPRRHAGY Trigger: ATAACCGGCGTGTCGCCTTGGCCACCATTGTGACAATCGTGTTGCTTCATGTGCTGCTCTCTGTGGGCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS GCA 72 bp | GGCCGCTGTTACTGTCTGGTTGGGAGTGGTTATAGCTaGTGGGAGGTGGTCCATCTCTGGAGCATCAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: GRCYCLVGSGYS*WEVVHLWSIKE Trigger: TTCTTTGATGCTCCAGAGATGGACCACCTCCCAGCAGCTATAACCACTCCCAACCAGACAGTAACAGCGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS CCA 72 bp | AGAGCAGCACATGAAGCAACACGATTGTCACAATGGTaGCCAAGGCGACACGCCGGTTATCCTCACGAACAG | + |
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Preference number: 6 (lower is better) Translates to: RAAHEATRLSQW*PRRHAGYPHEQ Trigger: CTGTTCGTGAGGATAACCGGCGTGTCGCCTTGGCCACCATTGTGACAATCGTGTTGCTTCATGTGCTGCTCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS CCA 72 bp | CAGAGAGCAGCACATGAAGCAACACGATTGTCACAATaGTGGCCAAGGCGACACGCCGGTTATCCTCACGAA | + |
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Preference number: 6 (lower is better) Translates to: QRAAHEATRLSQ*WPRRHAGYPHE Trigger: TTCGTGAGGATAACCGGCGTGTCGCCTTGGCCACCATTGTGACAATCGTGTTGCTTCATGTGCTGCTCTCTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS CCA 72 bp | GGGAGTGGTTATAGCTGCTGGGAGGTGGTCCATCTCTaGAGCATCAAAGAAGTAAGCCAAGCAGCCCACAGA | + |
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Preference number: 6 (lower is better) Translates to: GSGYSCWEVVHL*SIKEVSQAAHR Trigger: TCTGTGGGCTGCTTGGCTTACTTCTTTGATGCTCCAGAGATGGACCACCTCCCAGCAGCTATAACCACTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS TCA 72 bp | AACAGCTGGCCAAAATGTCATTACCAACACAGAGCCTaGGACGCCCAGGGCAATCATGACAAGGACCCAACG | + |
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Preference number: 6 (lower is better) Translates to: NSWPKCHYQHRA*DAQGNHDKDPT Trigger: CGTTGGGTCCTTGTCATGATTGCCCTGGGCGTCTCAGGCTCTGTGTTGGTAATGACATTTTGGCCAGCTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS GCA 72 bp | CCAACGAACAACCCTCTGGGGAATGATCCACAGGACTaGTGTGGGGATATAGATGAACAGCGAGTAGCCGTA | + |
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Preference number: 6 (lower is better) Translates to: PTNNPLGNDPQD*CGDIDEQRVAV Trigger: TACGGCTACTCGCTGTTCATCTATATCCCCACAGCAGTCCTGTGGATCATTCCCCAGAGGGTTGTTCGTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075693.12 ENSMUST00000128284.8 ENSMUST00000139527.8 |
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| CDS GCA 72 bp | AGGGACCAGCCAGGCATAGGCATAGATGACAGTCGCTaGGATAGACACTTTCTGGAATTCGGGCACATAATG | + |
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Preference number: 6 (lower is better) Translates to: RDQPGIGIDDSR*DRHFLEFGHIM Trigger: CATTATGTGCCCGAATTCCAGAAAGTGTCTATCGCAGCGACTGTCATCTATGCCTATGCCTGGCTGGTCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075693.12 ENSMUST00000139527.8 |
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| CDS CCA 72 bp | CGCTGTTACTGTCTGGTTGGGAGTGGTTATAGCTGCTaGGAGGTGGTCCATCTCTGGAGCATCAAAGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: RCYCLVGSGYSC*EVVHLWSIKEV Trigger: TACTTCTTTGATGCTCCAGAGATGGACCACCTCCCAGCAGCTATAACCACTCCCAACCAGACAGTAACAGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075693.12 |
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| CDS GCA 72 bp | TGGCACATATCCAAAAGGGACCATAGAGATCTGGATTaGTGCGGATGTACAGCCTCACAAAGTTCTTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: WHISKRDHRDLD*CGCTASQSSFQ Trigger: CTGGAAAGAACTTTGTGAGGCTGTACATCCGCAGCAATCCAGATCTCTATGGTCCCTTTTGGATATGTGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075693.12 ENSMUST00000128284.8 ENSMUST00000139527.8 |
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| CDS GCA 72 bp | AGACACACACGATCTCCAGAAAGGAATAGGAAACCATaGTCATCACTTTGCTGTTTCTCCACAGGAGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: RHTRSPERNRKP*SSLCCFSTGGS Trigger: GCTTCCTCCTGTGGAGAAACAGCAAAGTGATGAGCATGGTTTCCTATTCCTTTCTGGAGATCGTGTGTGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075693.12 ENSMUST00000128284.8 ENSMUST00000139527.8 |
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| CDS GCA 72 bp | CACATATCCAAAAGGGACCATAGAGATCTGGATTGCTaGGGATGTACAGCCTCACAAAGTTCTTTCCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: HISKRDHRDLDC*GCTASQSSFQE Trigger: TTCCTGGAAAGAACTTTGTGAGGCTGTACATCCGCAGCAATCCAGATCTCTATGGTCCCTTTTGGATATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075693.12 ENSMUST00000128284.8 ENSMUST00000139527.8 |
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