RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for YIF1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024875

Ensembl transcript IDs: ENSMUST00000025811.6, ENSMUST00000236687.2, ENSMUST00000237025.2, ENSMUST00000237603.2, ENSMUST00000238093.2

Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTaGAAGGTCAGCCAGTATATGATGAGGGGCTGGAAGGCAGCTGCT +
Preference number: 1 (lower is better)
Translates to: WKNECHLRTRDHRTR*KVSQYMMRGWKAAA
Trigger: AGCAGCTGCCTTCCAGCCCCTCATCATATACTGGCTGACCTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
3UTR TCA 90 bp TCGAGGATGCTCTCCCAGAATCCGCTTACCCTTCTCTTAGAAGCCTaGAGCCTAGTCCCCTGGGCAAAGCAGATACCTATGGCTTCCCCT +
Preference number: 1 (lower is better)
Translates to: SRMLSQNPLTLLLEA*SLVPWAKQIPMASP
Trigger: AGGGGAAGCCATAGGTATCTGCTTTGCCCAGGGGACTAGGCTTCAGGCTTCTAAGAGAAGGGTAAGCGGATTCTGGGAGAGCATCCTCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR TCA 90 bp AGCTGCAGTCCGCAAAGATCGTACAATGAAGTACATAAGCGCAGATaGTGTCCAGGCCAGGGCCACGTAGTAGCCATCACTGCCGAAGAG +
Preference number: 1 (lower is better)
Translates to: SCSPQRSYNEVHKRR*CPGQGHVVAITAEE
Trigger: CTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATTGTACGATCTTTGCGGACTGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
3UTR CCA 90 bp TTGCTCTGGGCTTTTCTGGAACCCTCTCGGATGAATCTGAAGCCTTaGAAGTCTCCTTGTAGCCACCCTTCCATCTTCCCTTTCCAGCTG +
Preference number: 1 (lower is better)
Translates to: LLWAFLEPSRMNLKP*KSPCSHPSIFPFQL
Trigger: CAGCTGGAAAGGGAAGATGGAAGGGTGGCTACAAGGAGACTTCCAAGGCTTCAGATTCATCCGAGAGGGTTCCAGAAAAGCCCAGAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR GCA 90 bp GTCCGATGCGACCCTTCCAGCTGTTTTTCAAAGCAGTATAAAAGATaGCTCGAGGATGCTCTCCCAGAATCCGCTTACCCTTCTCTTAGA +
Preference number: 1 (lower is better)
Translates to: VRCDPSSCFSKQYKR*LEDALPESAYPSLR
Trigger: TCTAAGAGAAGGGTAAGCGGATTCTGGGAGAGCATCCTCGAGGCATCTTTTATACTGCTTTGAAAAACAGCTGGAAGGGTCGCATCGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR-3UTR TCA 90 bp GGCAGCTGCTCCCAGGGTCAGGTAGAGCTGGAGACGCTGCCGAGGGGCTGGGCCGAGCCAACACCTCCATaGACACCCACACCAGTGCTG +
Preference number: 2 (lower is better)
Translates to: GSCSQGQVELETLPRGWAEPTPP*TPTPVL
Trigger: CAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTC...GGCCCAGCCCCTCGGCAGCGTCTCCAGCTCTACCTGACCCTGGGAGCAGCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
3UTR-3UTR TCA 90 bp AAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAAGGTCAGCGTACATAAGCGCAGATaGTGTCCAGGCCAGGGCCAC +
Preference number: 2 (lower is better)
Translates to: KNECHLRTRDHRTRWKVSVHKRR*CPGQGH
Trigger: GTGGCCCTGGCCTGGACATCATCTGCGCTTATGTAC...GCTGACCTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
3UTR-3UTR TCA 90 bp GCCCTACTTGCTCTGGGCTTTTCTGGAACCCTCTCGGATGAATCTGAAGCCTTGCTTCTCTTAGAAGCCTaGAGCCTAGTCCCCTGGGCA +
Preference number: 2 (lower is better)
Translates to: ALLALGFSGTLSDESEALLLLEA*SLVPWA
Trigger: TGCCCAGGGGACTAGGCTTCAGGCTTCTAAGAGAAG...CAAGGCTTCAGATTCATCCGAGAGGGTTCCAGAAAAGCCCAGAGCAAGTAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR-3UTR GCA 90 bp GAAGCTGCAGTCCGCAAAGATCGTACAATGAAGTACATAAGCGCAGATGATGTCCACCAGTGCTGTGCTTaGACACAGGCCCAACACCTC +
Preference number: 2 (lower is better)
Translates to: EAAVRKDRTMKYISADDVHQCCA*TQAQHL
Trigger: GAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTG...GACATCATCTGCGCTTATGTACTTCATTGTACGATCTTTGCGGACTGCAGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
3UTR-3UTR GCA 90 bp AGCCCCAATTCTGCTTCTGGAAGGCTTGAACACATAGGGTTAGGTGGAATATTCCAGCACTGTGAGCCTTaGCCTACTTGCTCTGGGCTT +
Preference number: 2 (lower is better)
Translates to: SPNSASGRLEHIGLGGIFQHCEP*PTCSGL
Trigger: AAGCCCAGAGCAAGTAGGGCAAGGCTCACAGTGCTG...GAATATTCCACCTAACCCTATGTGTTCAAGCCTTCCAGAAGCAGAATTGGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR TCA 72 bp CCAGGTAGAGGCCCAGAAGCAGAGCCAACACCTCCATaGACACCCACACCAGTGCTGTGCTTGCACACAGGC +
Preference number: 3 (lower is better)
Translates to: PGRGPEAEPTPP*TPTPVLCLHTG
Trigger: GCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
3UTR GCA 72 bp CGCTGTAAGCCAAGAGGTGGAAGGTACTCAGTTCACTaGGTACGGTGGCCAGGTAGAGGCCCAGAAGCAGAG +
Preference number: 3 (lower is better)
Translates to: RCKPRGGRYSVH*VRWPGRGPEAE
Trigger: CTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
3UTR CCA 72 bp GAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTaGAAGGTCAGCCAGTATATGATGAGGGGCTGGAAG +
Preference number: 3 (lower is better)
Translates to: ECHLRTRDHRTR*KVSQYMMRGWK
Trigger: CTTCCAGCCCCTCATCATATACTGGCTGACCTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
3UTR GCA 72 bp CAACACCTCCATGAACACCCACACCAGTGCTGTGCTTaGACACAGGCCCAACACCTCTGGGGAGAACCTTTG +
Preference number: 3 (lower is better)
Translates to: QHLHEHPHQCCA*TQAQHLWGEPL
Trigger: CAAAGGTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
3UTR TCA 72 bp CTCTCCCAGAATCCGCTTACCCTTCTCTTAGAAGCCTaGAGCCTAGTCCCCTGGGCAAAGCAGATACCTATG +
Preference number: 3 (lower is better)
Translates to: LSQNPLTLLLEA*SLVPWAKQIPM
Trigger: CATAGGTATCTGCTTTGCCCAGGGGACTAGGCTTCAGGCTTCTAAGAGAAGGGTAAGCGGATTCTGGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR CCA 72 bp GCTTTTCTGGAACCCTCTCGGATGAATCTGAAGCCTTaGAAGTCTCCTTGTAGCCACCCTTCCATCTTCCCT +
Preference number: 3 (lower is better)
Translates to: AFLEPSRMNLKP*KSPCSHPSIFP
Trigger: AGGGAAGATGGAAGGGTGGCTACAAGGAGACTTCCAAGGCTTCAGATTCATCCGAGAGGGTTCCAGAAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR GCA 72 bp GCCACCCTTCCATCTTCCCTTTCCAGCTGTGTCCGATaGGACCCTTCCAGCTGTTTTTCAAAGCAGTATAAA +
Preference number: 3 (lower is better)
Translates to: ATLPSSLSSCVR*DPSSCFSKQYK
Trigger: TTTATACTGCTTTGAAAAACAGCTGGAAGGGTCGCATCGGACACAGCTGGAAAGGGAAGATGGAAGGGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
3UTR GCA 72 bp GACCCTTCCAGCTGTTTTTCAAAGCAGTATAAAAGATaGCTCGAGGATGCTCTCCCAGAATCCGCTTACCCT +
Preference number: 3 (lower is better)
Translates to: DPSSCFSKQYKR*LEDALPESAYP
Trigger: AGGGTAAGCGGATTCTGGGAGAGCATCCTCGAGGCATCTTTTATACTGCTTTGAAAAACAGCTGGAAGGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp CTAGTCCCCTGGGCAAAGCAGATACCTATGGCTTCCCCTCAGGTCCCAGGAACCGGCTACATCAGCTCCTaGGGCTGGGTATCCGCCCAG +
Preference number: 4 (lower is better)
Translates to: LVPWAKQIPMASPQVPGTGYISS*GWVSAQ
Trigger: CTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCC...GGTTCCTGGGACCTGAGGGGAAGCCATAGGTATCTGCTTTGCCCAGGGGACTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp CTAGTCCCCTGGGCAAAGCAGATACCTATGGCTTCCCCTCAGGTCCCAGGAACCGAACACCCACACCAGTaGTGTGCTTGCACACAGGCC +
Preference number: 4 (lower is better)
Translates to: LVPWAKQIPMASPQVPGTEHPHQ*CACTQA
Trigger: GGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTC...GGTTCCTGGGACCTGAGGGGAAGCCATAGGTATCTGCTTTGCCCAGGGGACTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp CAGGTGGAAGGTCAGCCAGTATATGATGAGGGGCTGGAAGGCAGCTGCTCCCAGGAACACCCACACCAGTaGTGTGCTTGCACACAGGCC +
Preference number: 4 (lower is better)
Translates to: QVEGQPVYDEGLEGSCSQEHPHQ*CACTQA
Trigger: GGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTC...CTGGGAGCAGCTGCCTTCCAGCCCCTCATCATATACTGGCTGACCTTCCACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238093.2
CDS-3UTR CCA 90 bp CAGGTGGAAGGTCAGCCAGTATATGATGAGGGGCTGGAAGGCAGCTGCTCCCAGGTTCACTGCGTACGGTaGCCAGGTAGAGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: QVEGQPVYDEGLEGSCSQVHCVR*PGRGPE
Trigger: TTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAAC...CTGGGAGCAGCTGCCTTCCAGCCCCTCATCATATACTGGCTGACCTTCCACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238093.2
CDS-3UTR GCA 90 bp CAGGTGGAAGGTCAGCCAGTATATGATGAGGGGCTGGAAGGCAGCTGCTCCCAGGGTGCCATAGGCCATTaGCATATTGGCCACTGGGTC +
Preference number: 4 (lower is better)
Translates to: QVEGQPVYDEGLEGSCSQGAIGH*HIGHWV
Trigger: GACCCAGTGGCCAATATGGCAATGGCCTATGGCACC...CTGGGAGCAGCTGCCTTCCAGCCCCTCATCATATACTGGCTGACCTTCCACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CCA 90 bp TGTAACCGCTGTAAGCCAAGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGGAGTGGAGGAGGGTCTaGAGCTGCCCGGGTCCTATG +
Preference number: 4 (lower is better)
Translates to: CNRCKPRGGRYSVHCVRWEWRRV*SCPGPM
Trigger: CATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTC...CCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CCA 90 bp GTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAAGGGCTACATCAGCTCCTaGGGCTGGGTATCCGCCCAG +
Preference number: 4 (lower is better)
Translates to: VWKNECHLRTRDHRTRWKGYISS*GWVSAQ
Trigger: CTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCC...CTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR TCA 90 bp CCCTCTCGGATGAATCTGAAGCCTTGGAAGTCTCCTTGTAGCCACCCTTCCATCAGAGGTCAGGGGCATTaGGATCTTTCCGCGGGGGCA +
Preference number: 4 (lower is better)
Translates to: PSRMNLKPWKSPCSHPSIRGQGH*DLSAGA
Trigger: TGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCT...GATGGAAGGGTGGCTACAAGGAGACTTCCAAGGCTTCAGATTCATCCGAGAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp CTTGCTCTGGGCTTTTCTGGAACCCTCTCGGATGAATCTGAAGCCTTGGAAGTCGAGTGGAGGAGGGTCTaGAGCTGCCCGGGTCCTATG +
Preference number: 4 (lower is better)
Translates to: LALGFSGTLSDESEALEVEWRRV*SCPGPM
Trigger: CATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTC...GACTTCCAAGGCTTCAGATTCATCCGAGAGGGTTCCAGAAAAGCCCAGAGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp AATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGGGCTACATCAGCTCCTaGGGCTGGGTATCCGCCCAG +
Preference number: 4 (lower is better)
Translates to: NVWKNECHLRTRDHRTRWGYISS*GWVSAQ
Trigger: CTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCC...CCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR TCA 90 bp AATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAGAGGTCAGGGGCATTaGGATCTTTCCGCGGGGGCA +
Preference number: 4 (lower is better)
Translates to: NVWKNECHLRTRDHRTRWRGQGH*DLSAGA
Trigger: TGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCT...CCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000238093.2
CDS-3UTR TCA 90 bp TACCTATGGCTTCCCCTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAAGAGCCAACACCTCCATaGACACCCACACCAGTGCTG +
Preference number: 4 (lower is better)
Translates to: YLWLPLRSQEPGSSQVKEEPTPP*TPTPVL
Trigger: CAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTC...TTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAGGGGAAGCCATAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp AGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGCCAGGTAGAGGCCCAGAACGGTGCAGCTCTTTGTaGACTATGTCCTTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: RGGRYSVHCVRWPGRGPERCSSL*TMSFPW
Trigger: CCAAGGGAAGGACATAGTGCACAAAGAGCTGCACCG...TTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR GCA 90 bp GCCCTACTTGCTCTGGGCTTTTCTGGAACCCTCTCGGATGAATCTGAAGCCTTGCACCAGTGCTGTGCTTaGACACAGGCCCAACACCTC +
Preference number: 4 (lower is better)
Translates to: ALLALGFSGTLSDESEALHQCCA*TQAQHL
Trigger: GAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTG...CAAGGCTTCAGATTCATCCGAGAGGGTTCCAGAAAAGCCCAGAGCAAGTAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp AACCGCTGTAAGCCAAGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGCCACCCGGGTCCTATGCTTaGAACCGTGGACTCCATATG +
Preference number: 4 (lower is better)
Translates to: NRCKPRGGRYSVHCVRWPPGSYA*NRGLHM
Trigger: CATATGGAGTCCACGGTTCCAAGCATAGGACCCGGG...TGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CCA 90 bp AAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAAGGTCAGCCCCGGGTCCTATGCTTaGAACCGTGGACTCCATATG +
Preference number: 4 (lower is better)
Translates to: KNECHLRTRDHRTRWKVSPGSYA*NRGLHM
Trigger: CATATGGAGTCCACGGTTCCAAGCATAGGACCCGGG...GCTGACCTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CCA 90 bp CAGGTGGAAGGTCAGCCAGTATATGATGAGGGGCTGGAAGGCAGCTGCTCCCAGACTATGTCCTTCCCTTaGGATGCTATGGAGGTGCCA +
Preference number: 4 (lower is better)
Translates to: QVEGQPVYDEGLEGSCSQTMSFP*DAMEVP
Trigger: TGGCACCTCCATAGCATCCCAAGGGAAGGACATAGT...CTGGGAGCAGCTGCCTTCCAGCCCCTCATCATATACTGGCTGACCTTCCACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CCA 90 bp TACCTATGGCTTCCCCTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAAGTTCACTGCGTACGGTaGCCAGGTAGAGGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: YLWLPLRSQEPGSSQVKEVHCVR*PGRGPE
Trigger: TTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAAC...TTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAGGGGAAGCCATAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp CCCTCTCGGATGAATCTGAAGCCTTGGAAGTCTCCTTGTAGCCACCCTTCCATCGGTGCCATAGGCCATTaGCATATTGGCCACTGGGTC +
Preference number: 4 (lower is better)
Translates to: PSRMNLKPWKSPCSHPSIGAIGH*HIGHWV
Trigger: GACCCAGTGGCCAATATGGCAATGGCCTATGGCACC...GATGGAAGGGTGGCTACAAGGAGACTTCCAAGGCTTCAGATTCATCCGAGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp TACCTATGGCTTCCCCTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAACCCGGGTCCTATGCTTaGAACCGTGGACTCCATATG +
Preference number: 4 (lower is better)
Translates to: YLWLPLRSQEPGSSQVKEPGSYA*NRGLHM
Trigger: CATATGGAGTCCACGGTTCCAAGCATAGGACCCGGG...TTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAGGGGAAGCCATAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp AACCGCTGTAAGCCAAGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGCCATCCCTTGGGATGCTATaGAGGTGCCATAGGCCATTG +
Preference number: 4 (lower is better)
Translates to: NRCKPRGGRYSVHCVRWPSLGML*RCHRPL
Trigger: CAATGGCCTATGGCACCTCCATAGCATCCCAAGGGA...TGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CCA 90 bp AGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGCCAGGTAGAGGCCCAGAAACTATGTCCTTCCCTTaGGATGCTATGGAGGTGCCA +
Preference number: 4 (lower is better)
Translates to: RGGRYSVHCVRWPGRGPETMSFP*DAMEVP
Trigger: TGGCACCTCCATAGCATCCCAAGGGAAGGACATAGT...TTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CCA 90 bp TGTAACCGCTGTAAGCCAAGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGTGTATCATCGAAGAGTaGAGGAGGGTCTGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: CNRCKPRGGRYSVHCVRWCIIEE*RRVWSC
Trigger: GCAGCTCCAGACCCTCCTCCACTCTTCGATGATACA...CCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CCA 90 bp GTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAAGTGTATCATCGAAGAGTaGAGGAGGGTCTGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: VWKNECHLRTRDHRTRWKCIIEE*RRVWSC
Trigger: GCAGCTCCAGACCCTCCTCCACTCTTCGATGATACA...CTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CCA 90 bp ACCTATGGCTTCCCCTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAAATCCCTTGGGATGCTATaGAGGTGCCATAGGCCATTG +
Preference number: 4 (lower is better)
Translates to: TYGFPSGPRNQGQAKLRKSLGML*RCHRPL
Trigger: CAATGGCCTATGGCACCTCCATAGCATCCCAAGGGA...TTTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAGGGGAAGCCATAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR TCA 90 bp CTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAAACCAAATCTTCAATGGTACATAAGCGCAGATaGTGTCCAGGCCAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: LRSQEPGSSQVKETKSSMVHKRR*CPGQGH
Trigger: GTGGCCCTGGCCTGGACATCATCTGCGCTTATGTAC...CATTGAAGATTTGGTTTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp AACCGCTGTAAGCCAAGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGCCAACGGACACAAAACGGTaGAGCTCTTTGTGCACTATG +
Preference number: 4 (lower is better)
Translates to: NRCKPRGGRYSVHCVRWPTDTKR*SSLCTM
Trigger: CATAGTGCACAAAGAGCTGCACCGTTTTGTGTCCGT...TGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CCA 90 bp AACCGCTGTAAGCCAAGAGGTGGAAGGTACTCAGTTCACTGCGTACGGTGGCCAATCCGCCCAGTTGGCTaGAATAACCACCACTTGTAT +
Preference number: 4 (lower is better)
Translates to: NRCKPRGGRYSVHCVRWPIRPVG*NNHHLY
Trigger: ATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGAT...TGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR GCA 90 bp TTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGAGGTACTCAGTTCACTaGGTACGGTGGCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: FNVWKNECHLRTRDHRTRRYSVH*VRWPGR
Trigger: TCTACCTGGCCACCGTACGCAGTGAACTGAGTACCT...CCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238093.2
CDS-3UTR GCA 90 bp CAAATCTTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGGGTGCCATAGGCCATTaGCATATTGGCCACTGGGTC +
Preference number: 4 (lower is better)
Translates to: QIFNVWKNECHLRTRDHRGAIGH*HIGHWV
Trigger: GACCCAGTGGCCAATATGGCAATGGCCTATGGCACC...CCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAAGATTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CCA 90 bp CTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAAACCAAATCTTCAATGTGTATCATCGAAGAGTaGAGGAGGGTCTGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: LRSQEPGSSQVKETKSSMCIIEE*RRVWSC
Trigger: GCAGCTCCAGACCCTCCTCCACTCTTCGATGATACA...CATTGAAGATTTGGTTTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR TCA 90 bp CTTGCTCTGGGCTTTTCTGGAACCCTCTCGGATGAATCTGAAGCCTTGGAAGTCTGCATTTTCCAGTTCTaGTGTGTGTATGGGAAGACC +
Preference number: 4 (lower is better)
Translates to: LALGFSGTLSDESEALEVCIFQF*CVYGKT
Trigger: GGTCTTCCCATACACACATCAGAACTGGAAAATGCA...GACTTCCAAGGCTTCAGATTCATCCGAGAGGGTTCCAGAAAAGCCCAGAGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp AGCCCCAATTCTGCTTCTGGAAGGCTTGAACACATAGGGTTAGGTGGAATATTCCGGTGCAGCTCTTTGTaGACTATGTCCTTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: SPNSASGRLEHIGLGGIFRCSSL*TMSFPW
Trigger: CCAAGGGAAGGACATAGTGCACAAAGAGCTGCACCG...GAATATTCCACCTAACCCTATGTGTTCAAGCCTTCCAGAAGCAGAATTGGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp AACCAAATCTTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCACCAGTGCTGTGCTTaGACACAGGCCCAACACCTC +
Preference number: 4 (lower is better)
Translates to: NQIFNVWKNECHLRTRDHHQCCA*TQAQHL
Trigger: GAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTG...GTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAAGATTTGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238093.2
CDS-3UTR GCA 90 bp ATAAAAGATGCCTCGAGGATGCTCTCCCAGAATCCGCTTACCCTTCTCTTAGAAAGGTACTCAGTTCACTaGGTACGGTGGCCAGGTAGA +
Preference number: 4 (lower is better)
Translates to: IKDASRMLSQNPLTLLLERYSVH*VRWPGR
Trigger: TCTACCTGGCCACCGTACGCAGTGAACTGAGTACCT...TTCTAAGAGAAGGGTAAGCGGATTCTGGGAGAGCATCCTCGAGGCATCTTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp CAAATCTTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGTCCCTTGGGATGCTATaGAGGTGCCATAGGCCATTG +
Preference number: 4 (lower is better)
Translates to: QIFNVWKNECHLRTRDHRSLGML*RCHRPL
Trigger: CAATGGCCTATGGCACCTCCATAGCATCCCAAGGGA...CCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAAGATTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR TCA 90 bp TTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGCATTTTCCAGTTCTaGTGTGTGTATGGGAAGACC +
Preference number: 4 (lower is better)
Translates to: FNVWKNECHLRTRDHRTRCIFQF*CVYGKT
Trigger: GGTCTTCCCATACACACATCAGAACTGGAAAATGCA...CCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238093.2
CDS-3UTR GCA 90 bp CTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAAACCAAATCTTCAATGACGGACACAAAACGGTaGAGCTCTTTGTGCACTATG +
Preference number: 4 (lower is better)
Translates to: LRSQEPGSSQVKETKSSMTDTKR*SSLCTM
Trigger: CATAGTGCACAAAGAGCTGCACCGTTTTGTGTCCGT...CATTGAAGATTTGGTTTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp AGCCCCAATTCTGCTTCTGGAAGGCTTGAACACATAGGGTTAGGTGGAATATTCACTATGTCCTTCCCTTaGGATGCTATGGAGGTGCCA +
Preference number: 4 (lower is better)
Translates to: SPNSASGRLEHIGLGGIFTMSFP*DAMEVP
Trigger: TGGCACCTCCATAGCATCCCAAGGGAAGGACATAGT...GAATATTCCACCTAACCCTATGTGTTCAAGCCTTCCAGAAGCAGAATTGGGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR GCA 90 bp CAAATCTTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACGGACACAAAACGGTaGAGCTCTTTGTGCACTATG +
Preference number: 4 (lower is better)
Translates to: QIFNVWKNECHLRTRDHRTDTKR*SSLCTM
Trigger: CATAGTGCACAAAGAGCTGCACCGTTTTGTGTCCGT...CCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAAGATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CCA 90 bp AGCCCCAATTCTGCTTCTGGAAGGCTTGAACACATAGGGTTAGGTGGAATATTCATCCGCCCAGTTGGCTaGAATAACCACCACTTGTAT +
Preference number: 4 (lower is better)
Translates to: SPNSASGRLEHIGLGGIFIRPVG*NNHHLY
Trigger: ATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGAT...GAATATTCCACCTAACCCTATGTGTTCAAGCCTTCCAGAAGCAGAATTGGGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CCA 90 bp CAAATCTTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGATCCGCCCAGTTGGCTaGAATAACCACCACTTGTAT +
Preference number: 4 (lower is better)
Translates to: QIFNVWKNECHLRTRDHRIRPVG*NNHHLY
Trigger: ATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGAT...CCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAAGATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp CAGCTGCTCCCAGGGTCAGGTAGAGCTGGAGACGCTGCCGAGGGGCTGGGCCCCTGGGTATCCGCCCAGTaGGCTGGAATAACCACCACT +
Preference number: 5 (lower is better)
Translates to: QLLPGSGRAGDAAEGLGPWVSAQ*AGITTT
Trigger: AGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCA...GGGGCCCAGCCCCTCGGCAGCGTCTCCAGCTCTACCTGACCCTGGGAGCAGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CAA 90 bp CAGCTGCTCCCAGGGTCAGGTAGAGCTGGAGACGCTGCCGAGGGGCTGGGCCCCGGGTCTCCAAGCAGGTaGTTGACACTGAAGGCTACA +
Preference number: 5 (lower is better)
Translates to: QLLPGSGRAGDAAEGLGPGSPSR*LTLKAT
Trigger: TGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCC...GGGGCCCAGCCCCTCGGCAGCGTCTCCAGCTCTACCTGACCCTGGGAGCAGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS-3UTR CAA 90 bp AGGCAGCTGCTCCCAGGGTCAGGTAGAGCTGGAGACGCTGCCGAGGGGCTGGGCCACTATGTCCTTCCCTaGGGATGCTATGGAGGTGCC +
Preference number: 5 (lower is better)
Translates to: RQLLPGSGRAGDAAEGLGHYVLP*GCYGGA
Trigger: GGCACCTCCATAGCATCCCAAGGGAAGGACATAGTG...GCCCAGCCCCTCGGCAGCGTCTCCAGCTCTACCTGACCCTGGGAGCAGCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237603.2
CDS CCA 90 bp TCCGCCCAGTTGGCTGGAATAACCACCACTTGTATCATCGAAGAGTaGAGGAGGGTCTGGAGCTGCCCGGGTCCTATGCTTGGAACCGTG +
Preference number: 5 (lower is better)
Translates to: SAQLAGITTTCIIEE*RRVWSCPGPMLGTV
Trigger: CACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025811.6
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS TCA 90 bp GCTGTGCTTGCACACAGGCCCAACACCTCTGGGGAGAACCTTTGCTaGATGCCTAGCGCCATTCCAGCCAGCAGCACGTATGTGATGAAG +
Preference number: 5 (lower is better)
Translates to: AVLAHRPNTSGENLC*MPSAIPASSTYVMK
Trigger: CTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAGGTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000238093.2
CDS CCA 90 bp TCCGCCCAGTTGGCTGGAATAACCACCACTTGTATCATCGAAGAGTaGAGGAGGGTCTGGAGCTGCCCGGGTCCTATGCTTGGAACCCAT +
Preference number: 5 (lower is better)
Translates to: SAQLAGITTTCIIEE*RRVWSCPGPMLGTH
Trigger: ATGGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236687.2
CDS TCA 90 bp CTGCCGAAGAGCAGCCCCGTGAGCACACTAAGGATCATCCTTTGCTaGATGCCTAGCGCCATTCCAGCCAGCAGCACGTATGTGATGAAG +
Preference number: 5 (lower is better)
Translates to: LPKSSPVSTLRIILC*MPSAIPASSTYVMK
Trigger: CTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAGGATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237025.2
CDS CCA 90 bp GCTGGAATAACCACCACTTGTATCATCGAAGAGTGGAGGAGGGTCTaGAGCTGCCCGGGTCCTATGCTTGGAACCGTGGACTCCATATGC +
Preference number: 5 (lower is better)
Translates to: AGITTTCIIEEWRRV*SCPGPMLGTVDSIC
Trigger: GCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025811.6
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS GCA 90 bp ATAACCACCACTTGTATCATCGAAGAGTGGAGGAGGGTCTGGAGCTaGCCGGGTCCTATGCTTGGAACCGTGGACTCCATATGCCGAATG +
Preference number: 5 (lower is better)
Translates to: ITTTCIIEEWRRVWS*PGPMLGTVDSICRM
Trigger: CATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025811.6
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS GCA 90 bp GCAGCTCTTTGTGCACTATGTCCTTCCCTTGGGATGCTATGGAGGTaGCATAGGCCATTGCCATATTGGCCACTGGGTCTCCAAGCAGGT +
Preference number: 5 (lower is better)
Translates to: AALCALCPSLGMLWR*HRPLPYWPLGLQAG
Trigger: ACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp CTAAACCCCAGCACTGTGAGCCTTGCCCTACTTGCTCTGGGCTTTTCTGGAACCGGGTCTCCAAGCAGGTaGTTGACACTGAAGGCTACA +
Preference number: 5 (lower is better)
Translates to: LNPSTVSLALLALGFSGTGSPSR*LTLKAT
Trigger: TGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCC...GGTTCCAGAAAAGCCCAGAGCAAGTAGGGCAAGGCTCACAGTGCTGGGGTTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS CCA 90 bp TCCAAGCAGGTTGTTGACACTGAAGGCTACATCAGCTCCTGGGGCTaGGTATCCGCCCAGTTGGCTGGAATAACCACCACTTGTATCATC +
Preference number: 5 (lower is better)
Translates to: SKQVVDTEGYISSWG*VSAQLAGITTTCII
Trigger: GATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CCA 90 bp TTGGGATGCTATGGAGGTGCCATAGGCCATTGCCATATTGGCCACTaGGTCTCCAAGCAGGTTGTTGACACTGAAGGCTACATCAGCTCC +
Preference number: 5 (lower is better)
Translates to: LGCYGGAIGHCHIGH*VSKQVVDTEGYISS
Trigger: GGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp AAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAAGGTCAGCTCTCCAAGCAGGTTGTaGACACTGAAGGCTACATCA +
Preference number: 5 (lower is better)
Translates to: KNECHLRTRDHRTRWKVSSPSRL*TLKATS
Trigger: TGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGA...GCTGACCTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp TTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGCACTATGTCCTTCCCTaGGGATGCTATGGAGGTGCC +
Preference number: 5 (lower is better)
Translates to: FNVWKNECHLRTRDHRTRHYVLP*GCYGGA
Trigger: GGCACCTCCATAGCATCCCAAGGGAAGGACATAGTG...CCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp CTCAGGTCCCAGGAACCAGGGTCAAGCCAAGTTAAGGAAACCAAATCTTCAATGCACTATGTCCTTCCCTaGGGATGCTATGGAGGTGCC +
Preference number: 5 (lower is better)
Translates to: LRSQEPGSSQVKETKSSMHYVLP*GCYGGA
Trigger: GGCACCTCCATAGCATCCCAAGGGAAGGACATAGTG...CATTGAAGATTTGGTTTCCTTAACTTGGCTTGACCCTGGTTCCTGGGACCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CAA 90 bp GTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAAGTGGAATAACCACCACTaGTATCATCGAAGAGTGGAG +
Preference number: 5 (lower is better)
Translates to: VWKNECHLRTRDHRTRWKWNNHH*YHRRVE
Trigger: CTCCACTCTTCGATGATACAAGTGGTGGTTATTCCA...CTTCCACCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp AGCCCCAATTCTGCTTCTGGAAGGCTTGAACACATAGGGTTAGGTGGAATATTCTGGGTATCCGCCCAGTaGGCTGGAATAACCACCACT +
Preference number: 5 (lower is better)
Translates to: SPNSASGRLEHIGLGGIFWVSAQ*AGITTT
Trigger: AGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCA...GAATATTCCACCTAACCCTATGTGTTCAAGCCTTCCAGAAGCAGAATTGGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CAA 90 bp CTTGCTCTGGGCTTTTCTGGAACCCTCTCGGATGAATCTGAAGCCTTGGAAGTCTCTCCAAGCAGGTTGTaGACACTGAAGGCTACATCA +
Preference number: 5 (lower is better)
Translates to: LALGFSGTLSDESEALEVSPSRL*TLKATS
Trigger: TGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGA...GACTTCCAAGGCTTCAGATTCATCCGAGAGGGTTCCAGAAAAGCCCAGAGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CAA 90 bp CAAATCTTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGGGGTCTCCAAGCAGGTaGTTGACACTGAAGGCTACA +
Preference number: 5 (lower is better)
Translates to: QIFNVWKNECHLRTRDHRGSPSR*LTLKAT
Trigger: TGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCC...CCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAAGATTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp TTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACCGGACCAGGTGGAATAACCACCACTaGTATCATCGAAGAGTGGAG +
Preference number: 5 (lower is better)
Translates to: FNVWKNECHLRTRDHRTRWNNHH*YHRRVE
Trigger: CTCCACTCTTCGATGATACAAGTGGTGGTTATTCCA...CCTGGTCCGGTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS-3UTR CAA 90 bp AGCCCCAATTCTGCTTCTGGAAGGCTTGAACACATAGGGTTAGGTGGAATATTCTGGAATAACCACCACTaGTATCATCGAAGAGTGGAG +
Preference number: 5 (lower is better)
Translates to: SPNSASGRLEHIGLGGIFWNNHH*YHRRVE
Trigger: CTCCACTCTTCGATGATACAAGTGGTGGTTATTCCA...GAATATTCCACCTAACCCTATGTGTTCAAGCCTTCCAGAAGCAGAATTGGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025811.6
CDS-3UTR CAA 90 bp AACCAAATCTTCAATGTATGGAAAAATGAGTGCCACCTAAGGACCAGGGATCACTCTCCAAGCAGGTTGTaGACACTGAAGGCTACATCA +
Preference number: 5 (lower is better)
Translates to: NQIFNVWKNECHLRTRDHSPSRL*TLKATS
Trigger: TGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGA...GTGATCCCTGGTCCTTAGGTGGCACTCATTTTTCCATACATTGAAGATTTGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 90 bp CTCCTGGGGCTGGGTATCCGCCCAGTTGGCTGGAATAACCACCACTaGTATCATCGAAGAGTGGAGGAGGGTCTGGAGCTGCCCGGGTCC +
Preference number: 6 (lower is better)
Translates to: LLGLGIRPVGWNNHH*YHRRVEEGLELPGS
Trigger: GGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CCA 72 bp GTGGAGGAGGGTCTGGAGCTGCCCGGGTCCTATGCTTaGAACCGTGGACTCCATATGCCGAATGGTAAGCCA +
Preference number: 6 (lower is better)
Translates to: VEEGLELPGSYA*NRGLHMPNGKP
Trigger: TGGCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025811.6
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS TCA 72 bp GCACACAGGCCCAACACCTCTGGGGAGAACCTTTGCTaGATGCCTAGCGCCATTCCAGCCAGCAGCACGTAT +
Preference number: 6 (lower is better)
Translates to: AHRPNTSGENLC*MPSAIPASSTY
Trigger: ATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAGGTTCTCCCCAGAGGTGTTGGGCCTGTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000238093.2
CDS CCA 72 bp ACCACCACTTGTATCATCGAAGAGTGGAGGAGGGTCTaGAGCTGCCCGGGTCCTATGCTTGGAACCGTGGAC +
Preference number: 6 (lower is better)
Translates to: TTTCIIEEWRRV*SCPGPMLGTVD
Trigger: GTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025811.6
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 90 bp GACACTGAAGGCTACATCAGCTCCTGGGGCTGGGTATCCGCCCAGTaGGCTGGAATAACCACCACTTGTATCATCGAAGAGTGGAGGAGG +
Preference number: 6 (lower is better)
Translates to: DTEGYISSWGWVSAQ*AGITTTCIIEEWRR
Trigger: CCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS TCA 72 bp AGCAGCCCCGTGAGCACACTAAGGATCATCCTTTGCTaGATGCCTAGCGCCATTCCAGCCAGCAGCACGTAT +
Preference number: 6 (lower is better)
Translates to: SSPVSTLRIILC*MPSAIPASSTY
Trigger: ATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAGGATGATCCTTAGTGTGCTCACGGGGCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237025.2
CDS GCA 72 bp ACTTGTATCATCGAAGAGTGGAGGAGGGTCTGGAGCTaGCCGGGTCCTATGCTTGGAACCGTGGACTCCATA +
Preference number: 6 (lower is better)
Translates to: TCIIEEWRRVWS*PGPMLGTVDSI
Trigger: TATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025811.6
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CCA 72 bp CATCAGCTCCTGGGGCTGGGTATCCGCCCAGTTGGCTaGAATAACCACCACTTGTATCATCGAAGAGTGGAG +
Preference number: 6 (lower is better)
Translates to: HQLLGLGIRPVG*NNHHLYHRRVE
Trigger: CTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CCA 72 bp GTTGTTGACACTGAAGGCTACATCAGCTCCTGGGGCTaGGTATCCGCCCAGTTGGCTGGAATAACCACCACT +
Preference number: 6 (lower is better)
Translates to: VVDTEGYISSWG*VSAQLAGITTT
Trigger: AGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 72 bp CTGGGTATCCGCCCAGTTGGCTGGAATAACCACCACTaGTATCATCGAAGAGTGGAGGAGGGTCTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: LGIRPVGWNNHH*YHRRVEEGLEL
Trigger: CAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 72 bp GGCTACATCAGCTCCTGGGGCTGGGTATCCGCCCAGTaGGCTGGAATAACCACCACTTGTATCATCGAAGAG +
Preference number: 6 (lower is better)
Translates to: GYISSWGWVSAQ*AGITTTCIIEE
Trigger: CTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 72 bp ATTGCCATATTGGCCACTGGGTCTCCAAGCAGGTTGTaGACACTGAAGGCTACATCAGCTCCTGGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: IAILATGSPSRL*TLKATSAPGAG
Trigger: CCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 72 bp GCCATTGCCATATTGGCCACTGGGTCTCCAAGCAGGTaGTTGACACTGAAGGCTACATCAGCTCCTGGGGCT +
Preference number: 6 (lower is better)
Translates to: AIAILATGSPSR*LTLKATSAPGA
Trigger: AGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CCA 72 bp TTGGCTGGAATAACCACCACTTGTATCATCGAAGAGTaGAGGAGGGTCTGGAGCTGCCCGGGTCCTATGCTT +
Preference number: 6 (lower is better)
Translates to: LAGITTTCIIEE*RRVWSCPGPML
Trigger: AAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 90 bp CACGGACACAAAACGGTGCAGCTCTTTGTGCACTATGTCCTTCCCTaGGGATGCTATGGAGGTGCCATAGGCCATTGCCATATTGGCCAC +
Preference number: 6 (lower is better)
Translates to: HGHKTVQLFVHYVLP*GCYGGAIGHCHIGH
Trigger: GTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGCTGCACCGTTTTGTGTCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CCA 72 bp TATGGAGGTGCCATAGGCCATTGCCATATTGGCCACTaGGTCTCCAAGCAGGTTGTTGACACTGAAGGCTAC +
Preference number: 6 (lower is better)
Translates to: YGGAIGHCHIGH*VSKQVVDTEGY
Trigger: GTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 72 bp AAAACGGTGCAGCTCTTTGTGCACTATGTCCTTCCCTaGGGATGCTATGGAGGTGCCATAGGCCATTGCCAT +
Preference number: 6 (lower is better)
Translates to: KTVQLFVHYVLP*GCYGGAIGHCH
Trigger: ATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGCTGCACCGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000237603.2
ENSMUST00000238093.2
CDS CAA 72 bp ATCTTTCCGCGGGGGCAGAGGCACATCATGGCTGTATaGCATTTTCCAGTTCTGATGTGTGTATGGGAAGAC +
Preference number: 6 (lower is better)
Translates to: IFPRGQRHIMAV*HFPVLMCVWED
Trigger: GTCTTCCCATACACACATCAGAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025811.6
ENSMUST00000236687.2
ENSMUST00000237025.2
ENSMUST00000238093.2