Pregenerated sensors for YES1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014932Ensembl transcript IDs: ENSMUST00000072311.13, ENSMUST00000168707.6, ENSMUST00000202543.4
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTTGCATTTGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCTCTGATAGGACTGGACCCTGAAGTATaGTGTAAGATGCATCATTGG | + |
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Preference number: 2 (lower is better) Translates to: FAFGRLGPFSHKRRPLIGLDPEV*CKMHHW Trigger: CCAATGATGCATCTTACAGCATACTTCAGGGTCCAG...TCCTATCAGAGGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR-3UTR GCA 90 bp | CTTACCATGCTACACCCACAATCACACTCTCTAGCTCTACTTTCTCTGGACCCTAAGTATGCTGTAAGATaGATCATTGGTACTTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: LTMLHPQSHSLALLSLDPKYAVR*IIGTLE Trigger: CTCTAAAGTACCAATGATGCATCTTACAGCATACTT...AGGGTCCAGAGAAAGTAGAGCTAGAGAGTGTGATTGTGGGTGTAGCATGGTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR-3UTR GCA 90 bp | TGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCTCTGATAGGAGTGCATGTAAGTATGCTGTAAGATaGATCATTGGTACTTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: WKTWPIFTQKEASDRSACKYAVR*IIGTLE Trigger: CTCTAAAGTACCAATGATGCATCTTACAGCATACTT...ACATGCACTCCTATCAGAGGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCTCTGATAGGAGTGCATGTCTTAGAATTTTCCTGTaGAGTAACAGCCAAGTTTTA | + |
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Preference number: 2 (lower is better) Translates to: WKTWPIFTQKEASDRSACLRIFL*SNSQVL Trigger: TAAAACTTGGCTGTTACTCCACAGGAAAATTCTAAG...ACATGCACTCCTATCAGAGGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR-3UTR CCA 90 bp | AATCCATTCCTTTGCATTTGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCCTTAGAATTTTCCTGTaGAGTAACAGCCAAGTTTTA | + |
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Preference number: 2 (lower is better) Translates to: NPFLCIWKTWPIFTQKEALRIFL*SNSQVL Trigger: TAAAACTTGGCTGTTACTCCACAGGAAAATTCTAAG...GGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAAGGAATGGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR-3UTR CAA 90 bp | TTTGCATTTGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCTCTGATAGGACAAGGTCTCTCTGTTTaGGCAGATCTGTGCACACAG | + |
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Preference number: 3 (lower is better) Translates to: FAFGRLGPFSHKRRPLIGQGLSV*ADLCTQ Trigger: CTGTGTGCACAGATCTGCCAAAACAGAGAGACCTTG...TCCTATCAGAGGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR-3UTR CAA 90 bp | CAGTTTACCATAAGAAACATGCCGAGTGAAGCATATCTTCTCATTTCTGTGCAGCAAGGTCTCTCTGTTTaGGCAGATCTGTGCACACAG | + |
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Preference number: 3 (lower is better) Translates to: QFTIRNMPSEAYLLISVQQGLSV*ADLCTQ Trigger: CTGTGTGCACAGATCTGCCAAAACAGAGAGACCTTG...CTGCACAGAAATGAGAAGATATGCTTCACTCGGCATGTTTCTTATGGTAAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR GCA 72 bp | GAAACATGCCGAGTGAAGCATATCTTCTCATTTCTGTaGAGGAAGAACTCACACAAGGTCTCTCTGTTTTGG | + |
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Preference number: 3 (lower is better) Translates to: ETCRVKHIFSFL*RKNSHKVSLFW Trigger: CCAAAACAGAGAGACCTTGTGTGAGTTCTTCCTGCACAGAAATGAGAAGATATGCTTCACTCGGCATGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR CCA 72 bp | GCTGTTTATAATCCATTCCTTTGCATTTGGAAGACTTaGCCCATTTTCACACAAAAGGAGGCCTCTGATAGG | + |
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Preference number: 3 (lower is better) Translates to: AVYNPFLCIWKT*PIFTQKEASDR Trigger: CCTATCAGAGGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAAGGAATGGATTATAAACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR CCA 72 bp | GGTCCCATGAAGTTCTTTGATCTTAGAATTTTCCTGTaGAGTAACAGCCAAGTTTTATACATACCAAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: GPMKFFDLRIFL*SNSQVLYIPRS Trigger: ACTTCTTGGTATGTATAAAACTTGGCTGTTACTCCACAGGAAAATTCTAAGATCAAAGAACTTCATGGGACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | TTCTCAGGAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGAAAAGGAGTCACCCCTaGGGACCCTCCAAAGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FSGDPLGRGVSNKVSLFWKRSHP*GPSKGC Trigger: ACACCCTTTGGAGGGTCCTCAGGGGTGACTCCTTTT...CCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTCCTGAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR CCA 90 bp | GAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGCAGATCTCTGATGCTCCCTTTGTaGAAGAGGTCGGGGCAACTG | + |
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Preference number: 4 (lower is better) Translates to: ETLLAEESVTRSLCFGRSLMLPL*KRSGQL Trigger: CAGTTGCCCCGACCTCTTCCACAAAGGGAGCATCAG...AGATCTGCCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR CCA 90 bp | TTCTCAGGAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGGATTCGGGACAGCCCTaGGGGCAAGGCATTCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: FSGDPLGRGVSNKVSLFWDSGQP*GQGILY Trigger: ATACAGAATGCCTTGCCCCCAGGGCTGTCCCGAATC...CCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTCCTGAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR TCA 90 bp | GGAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGCAGATCACTGAGCTCTGGTCGTaGTGTAGTAGCCACCATTGT | + |
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Preference number: 4 (lower is better) Translates to: GDPLGRGVSNKVSLFWQITELWS*CSSHHC Trigger: ACAATGGTGGCTACTACATCACGACCAGAGCTCAGT...GATCTGCCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR TCA 90 bp | GAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGCAGATCTATGCCATCAGCGATCTaGGCAGCCATATCAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: ETLLAEESVTRSLCFGRSMPSAI*AAISTS Trigger: GCTGGTTGATATGGCTGCTCAGATCGCTGATGGCAT...AGATCTGCCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR CCA 90 bp | TGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCTCTGATAGGAGTGCATGTCTGATGCTCCCTTTGTaGAAGAGGTCGGGGCAACTG | + |
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Preference number: 4 (lower is better) Translates to: WKTWPIFTQKEASDRSACLMLPL*KRSGQL Trigger: CAGTTGCCCCGACCTCTTCCACAAAGGGAGCATCAG...ACATGCACTCCTATCAGAGGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR CAA 72 bp | CAGGGCAAGAGGACCCAGTCTTCTCAGGAGACCCTCTaGGCAGAGGAGTCAGTACTGAATAGGTTAAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: QGKRTQSSQETL*AEESVLNRLSK Trigger: TTTACTTAACCTATTCAGTACTGACTCCTCTGCCAAGAGGGTCTCCTGAGAAGACTGGGTCCTCTTGCCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072311.13 |
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| CDS-3UTR TCA 90 bp | GAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGCAGATCTTCCCCAAAGCATCCTTaGCCTAGTTTCACCTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: ETLLAEESVTRSLCFGRSSPKHP*PSFTSS Trigger: ACTAGAGGTGAAACTAGGTCAAGGATGCTTTGGGGA...AGATCTGCCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR CCA 90 bp | CTTTCTTACCATGCTACACCCACAATCACACTCTCTAGCTCTACTTTCTCTGGACTGATGCTCCCTTTGTaGAAGAGGTCGGGGCAACTG | + |
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Preference number: 4 (lower is better) Translates to: LSYHATPTITLSSSTFSGLMLPL*KRSGQL Trigger: CAGTTGCCCCGACCTCTTCCACAAAGGGAGCATCAG...TCCAGAGAAAGTAGAGCTAGAGAGTGTGATTGTGGGTGTAGCATGGTAAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR CCA 90 bp | CTTTCTTACCATGCTACACCCACAATCACACTCTCTAGCTCTACTTTCTCTGGAGATTCGGGACAGCCCTaGGGGCAAGGCATTCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: LSYHATPTITLSSSTFSGDSGQP*GQGILY Trigger: ATACAGAATGCCTTGCCCCCAGGGCTGTCCCGAATC...TCCAGAGAAAGTAGAGCTAGAGAGTGTGATTGTGGGTGTAGCATGGTAAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR CCA 90 bp | AGTGAAGCATATCTTCTCATTTCTGTGCAGGAAGAACTCACACAAGGTCTCTCTGATTCGGGACAGCCCTaGGGGCAAGGCATTCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: SEAYLLISVQEELTQGLSDSGQP*GQGILY Trigger: ATACAGAATGCCTTGCCCCCAGGGCTGTCCCGAATC...AGAGAGACCTTGTGTGAGTTCTTCCTGCACAGAAATGAGAAGATATGCTTCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | CAGTTTACCATAAGAAACATGCCGAGTGAAGCATATCTTCTCATTTCTGTGCAGAAAAGGAGTCACCCCTaGGGACCCTCCAAAGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: QFTIRNMPSEAYLLISVQKRSHP*GPSKGC Trigger: ACACCCTTTGGAGGGTCCTCAGGGGTGACTCCTTTT...CTGCACAGAAATGAGAAGATATGCTTCACTCGGCATGTTTCTTATGGTAAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | AATCCATTCCTTTGCATTTGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCACTGAGCTCTGGTCGTaGTGTAGTAGCCACCATTGT | + |
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Preference number: 4 (lower is better) Translates to: NPFLCIWKTWPIFTQKEATELWS*CSSHHC Trigger: ACAATGGTGGCTACTACATCACGACCAGAGCTCAGT...GGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAAGGAATGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | AGTGAAGCATATCTTCTCATTTCTGTGCAGGAAGAACTCACACAAGGTCTCTCTATGCCATCAGCGATCTaGGCAGCCATATCAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: SEAYLLISVQEELTQGLSMPSAI*AAISTS Trigger: GCTGGTTGATATGGCTGCTCAGATCGCTGATGGCAT...AGAGAGACCTTGTGTGAGTTCTTCCTGCACAGAAATGAGAAGATATGCTTCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR GCA 90 bp | GGAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGCAGATCCTTGATTGGAAATTTTaGACCTTGTCTTGCCGTGTA | + |
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Preference number: 4 (lower is better) Translates to: GDPLGRGVSNKVSLFWQILDWKF*TLSCRV Trigger: TACACGGCAAGACAAGGTGCAAAATTTCCAATCAAG...GATCTGCCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR CCA 90 bp | TTCTCAGGAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGACGGTTTACCATACCTaGATATGGCACTCTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: FSGDPLGRGVSNKVSLFWTVYHT*IWHSSF Trigger: AAAGGAAGAGTGCCATATCCAGGTATGGTAAACCGT...CCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTCCTGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR TCA 90 bp | CTTTCTTACCATGCTACACCCACAATCACACTCTCTAGCTCTACTTTCTCTGGATCCCCAAAGCATCCTTaGCCTAGTTTCACCTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: LSYHATPTITLSSSTFSGSPKHP*PSFTSS Trigger: ACTAGAGGTGAAACTAGGTCAAGGATGCTTTGGGGA...TCCAGAGAAAGTAGAGCTAGAGAGTGTGATTGTGGGTGTAGCATGGTAAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | AATCCATTCCTTTGCATTTGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCTCCCCAAAGCATCCTTaGCCTAGTTTCACCTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: NPFLCIWKTWPIFTQKEASPKHP*PSFTSS Trigger: ACTAGAGGTGAAACTAGGTCAAGGATGCTTTGGGGA...GGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAAGGAATGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | GAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGCAGATCTACTGTTAAAATTAACTaGTGCTCCCTTTGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: ETLLAEESVTRSLCFGRSTVKIN*CSLCGR Trigger: TCTTCCACAAAGGGAGCATCAGTTAATTTTAACAGT...AGATCTGCCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR TCA 90 bp | CAGTTTACCATAAGAAACATGCCGAGTGAAGCATATCTTCTCATTTCTGTGCAGACTGAGCTCTGGTCGTaGTGTAGTAGCCACCATTGT | + |
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Preference number: 4 (lower is better) Translates to: QFTIRNMPSEAYLLISVQTELWS*CSSHHC Trigger: ACAATGGTGGCTACTACATCACGACCAGAGCTCAGT...CTGCACAGAAATGAGAAGATATGCTTCACTCGGCATGTTTCTTATGGTAAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| 3UTR CAA 72 bp | CAGCTAATGAGGAGTTTTGAGTGCCAGAAAGCCATGTaGTTTCTCTACAACACCAACATTAGACATCCCACC | + |
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Preference number: 4 (lower is better) Translates to: QLMRSFECQKAM*FLYNTNIRHPT Trigger: GGTGGGATGTCTAATGTTGGTGTTGTAGAGAAACAACATGGCTTTCTGGCACTCAAAACTCCTCATTAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072311.13 |
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| CDS-3UTR TCA 90 bp | CCCATGAAGTTCTTTGATCTTAGAATTTTCCTGTGGAGTAACAGCCAAGTTTTAATGCCATCAGCGATCTaGGCAGCCATATCAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: PMKFFDLRIFLWSNSQVLMPSAI*AAISTS Trigger: GCTGGTTGATATGGCTGCTCAGATCGCTGATGGCAT...TAAAACTTGGCTGTTACTCCACAGGAAAATTCTAAGATCAAAGAACTTCATGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR CCA 90 bp | AATCCATTCCTTTGCATTTGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCACGGTTTACCATACCTaGATATGGCACTCTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: NPFLCIWKTWPIFTQKEATVYHT*IWHSSF Trigger: AAAGGAAGAGTGCCATATCCAGGTATGGTAAACCGT...GGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAAGGAATGGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR GCA 90 bp | CTTTCTTACCATGCTACACCCACAATCACACTCTCTAGCTCTACTTTCTCTGGACTTGATTGGAAATTTTaGACCTTGTCTTGCCGTGTA | + |
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Preference number: 4 (lower is better) Translates to: LSYHATPTITLSSSTFSGLDWKF*TLSCRV Trigger: TACACGGCAAGACAAGGTGCAAAATTTCCAATCAAG...TCCAGAGAAAGTAGAGCTAGAGAGTGTGATTGTGGGTGTAGCATGGTAAGAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | AATCCATTCCTTTGCATTTGGAAGACTTGGCCCATTTTCACACAAAAGGAGGCCACTGTTAAAATTAACTaGTGCTCCCTTTGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: NPFLCIWKTWPIFTQKEATVKIN*CSLCGR Trigger: TCTTCCACAAAGGGAGCATCAGTTAATTTTAACAGT...GGCCTCCTTTTGTGTGAAAATGGGCCAAGTCTTCCAAATGCAAAGGAATGGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR TCA 90 bp | CAGTTTACCATAAGAAACATGCCGAGTGAAGCATATCTTCTCATTTCTGTGCAGACTGTTAAAATTAACTaGTGCTCCCTTTGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: QFTIRNMPSEAYLLISVQTVKIN*CSLCGR Trigger: TCTTCCACAAAGGGAGCATCAGTTAATTTTAACAGT...CTGCACAGAAATGAGAAGATATGCTTCACTCGGCATGTTTCTTATGGTAAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR GCA 90 bp | CCCATGAAGTTCTTTGATCTTAGAATTTTCCTGTGGAGTAACAGCCAAGTTTTACTTGATTGGAAATTTTaGACCTTGTCTTGCCGTGTA | + |
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Preference number: 4 (lower is better) Translates to: PMKFFDLRIFLWSNSQVLLDWKF*TLSCRV Trigger: TACACGGCAAGACAAGGTGCAAAATTTCCAATCAAG...TAAAACTTGGCTGTTACTCCACAGGAAAATTCTAAGATCAAAGAACTTCATGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR CAA 90 bp | TTCTCAGGAGACCCTCTTGGCAGAGGAGTCAGTAACAAGGTCTCTCTGTTTTGGGTATCCCCGCTCTACTaGTTCCAATACTTCACGGTT | + |
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Preference number: 5 (lower is better) Translates to: FSGDPLGRGVSNKVSLFWVSPLY*FQYFTV Trigger: AACCGTGAAGTATTGGAACAAGTAGAGCGGGGATAC...CCAAAACAGAGAGACCTTGTTACTGACTCCTCTGCCAAGAGGGTCTCCTGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168707.6 |
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| CDS-3UTR CAA 90 bp | CTTTCTTACCATGCTACACCCACAATCACACTCTCTAGCTCTACTTTCTCTGGAGTATCCCCGCTCTACTaGTTCCAATACTTCACGGTT | + |
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Preference number: 5 (lower is better) Translates to: LSYHATPTITLSSSTFSGVSPLY*FQYFTV Trigger: AACCGTGAAGTATTGGAACAAGTAGAGCGGGGATAC...TCCAGAGAAAGTAGAGCTAGAGAGTGTGATTGTGGGTGTAGCATGGTAAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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| CDS-3UTR CAA 90 bp | AGTGAAGCATATCTTCTCATTTCTGTGCAGGAAGAACTCACACAAGGTCTCTCTGTATCCCCGCTCTACTaGTTCCAATACTTCACGGTT | + |
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Preference number: 5 (lower is better) Translates to: SEAYLLISVQEELTQGLSVSPLY*FQYFTV Trigger: AACCGTGAAGTATTGGAACAAGTAGAGCGGGGATAC...AGAGAGACCTTGTGTGAGTTCTTCCTGCACAGAAATGAGAAGATATGCTTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072311.13 ENSMUST00000202543.4 |
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