Pregenerated sensors for YBX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030189Ensembl transcript IDs: ENSMUST00000032309.13, ENSMUST00000087865.4
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGAGGTCACCCTGCTGGTaGTTACGGTGCCTGGGAGCC | + |
|
Preference number: 2 (lower is better) Translates to: TGEAALLRLCRFPGYSLMRSPCW*LRCLGA Trigger: GGCTCCCAGGCACCGTAACCACCAGCAGGGTGACCT...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| 3UTR-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGTTTAGGTCACCCTGCTaGTGGTTACGGTGCCTGGGA | + |
|
Preference number: 2 (lower is better) Translates to: TGEAALLRLCRFPGYSLMFRSPC*WLRCLG Trigger: TCCCAGGCACCGTAACCACCAGCAGGGTGACCTAAA...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| 3UTR CAA 90 bp | GGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTaGATGGACACTTGCTGGCTCGTTCCCTTTGTAGTTGTTAGTTTC | + |
|
Preference number: 2 (lower is better) Translates to: GEAALLRLCRFPGYS*MDTCWLVPFVVVSF Trigger: GAAACTAACAACTACAAAGGGAACGAGCCAGCAAGTGTCCATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGTGGTGCCGCCGGTGGTaGCCTCGCCCGCCTCGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMWCRRW*PRPPRS Trigger: TGAGCGAGGCGGGCGAGGCCACCACCGGCGGCACCA...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR GCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGCTGGCCCCAGAGAACTaGCCATCTGCGGCAGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMLAPEN*PSAAGG Trigger: GCCCCCTGCCGCAGATGGGCAGTTCTCTGGGGCCAG...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032309.13 |
||
| CDS-3UTR GCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGGGCGGGAAACGCCGCTaGCGGTATGGAGGGCGATAC | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMGGKRR*RYGGRY Trigger: GTATCGCCCTCCATACCGGCAGCGGCGTTTCCCGCC...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032309.13 |
||
| CDS-3UTR GCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGGAGGTCCACGGCGCCTaGCATAGTAGCCGCGTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMEVHGA*HSSRVC Trigger: ACAGACGCGGCTACTATGGCAGGCGCCGTGGACCTC...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGGGCAGACGGCTGGTTTaGACCATTAGCCGCTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMGRRLV*TISRLL Trigger: CAGCAAGCGGCTAATGGTCCAAACCAGCCGTCTGCC...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGCAGCCTGCATTCTGTTaGGATGGGGAAAGACCCGTG | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMQPAFC*DGERPV Trigger: CACGGGTCTTTCCCCATCCCAACAGAATGCAGGCTG...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032309.13 |
||
| CDS-3UTR TCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGCTCTTTGCCATCTTGTaGAACAGCGTTGAGGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMLFAIL*NSVEGT Trigger: CGTCCCCTCAACGCTGTTTCACAAGATGGCAAAGAG...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR GCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGGCCAGTCACGTTTGCTaGTTCAGCACCCTTTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMASHVC*FSTLFS Trigger: GGAGAAAAGGGTGCTGAAGCAGCAAACGTGACTGGC...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR GCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGCCAATCTCACCAGCCTaGATTCTGTTGGGATGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMPISPA*ILLGWG Trigger: TCCCCATCCCAACAGAATGCAGGCTGGTGAGATTGG...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032309.13 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGTGCCAAGGACTTTGGTaGCGAGAACTTTCTTCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMCQGLW*RELSSP Trigger: CGGAGAAGAAAGTTCTCGCCACCAAAGTCCTTGGCA...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGCAGTGCCAAGGACTTTaGTGGCGAGAACTTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMQCQGL*WRELSS Trigger: AGAAGAAAGTTCTCGCCACCAAAGTCCTTGGCACTG...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGCCATTAGCCGCTTGCTaGTTTTCTTTGTCTTCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMPLAAC*FSLSSA Trigger: GGCTGAAGACAAAGAAAACCAGCAAGCGGCTAATGG...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGTTCTTGATGGCCGTCTaGTGTACAAACACATCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TGEAALLRLCRFPGYSLMFLMAV*CTNTSS Trigger: AGAAGATGTGTTTGTACACCAGACGGCCATCAAGAA...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS GCA 90 bp | TCATCTCCCCAATCTCACCAGCATTACGGGGAGGTCCACGGCGCCTaGCATAGTAGCCGCGTCTGTACCGGCGCCGGTCAGCAGCATAGC | + |
|
Preference number: 5 (lower is better) Translates to: SSPQSHQHYGEVHGA*HSSRVCTGAGQQHS Trigger: GCTATGCTGCTGACCGGCGCCGGTACAGACGCGGCTACTATGGCAGGCGCCGTGGACCTCCCCGTAATGCTGGTGAGATTGGGGAGATGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087865.4 |
||
| CDS-3UTR CAA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGACAGTGCCAAGGACTTaGGTGGCGAGAACTTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: TGEAALLRLCRFPGYSLMTVPRT*VARTFF Trigger: GAAGAAAGTTCTCGCCACCAAAGTCCTTGGCACTGT...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS-3UTR CAA 90 bp | ACTGGGGAGGCTGCTCTCCTGCGCCTGTGCAGGTTCCCGGGATACAGCTTGATGAGATACTTGCGTGGGTaGTTTTTCTTGATGGCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: TGEAALLRLCRFPGYSLMRYLRG*FFLMAV Trigger: GACGGCCATCAAGAAAAACAACCCACGCAAGTATCT...CATCAAGCTGTATCCCGGGAACCTGCACAGGCGCAGGAGAGCAGCCTCCCCAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||
| CDS GCA 72 bp | CAATCTCACCAGCATTACGGGGAGGTCCACGGCGCCTaGCATAGTAGCCGCGTCTGTACCGGCGCCGGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: QSHQHYGEVHGA*HSSRVCTGAGQ Trigger: CTGACCGGCGCCGGTACAGACGCGGCTACTATGGCAGGCGCCGTGGACCTCCCCGTAATGCTGGTGAGATTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087865.4 |
||
| CDS CCA 72 bp | GGGACGTCGGAATCCACGGCGGGCAGACGGCTGGTTTaGACCATTAGCCGCTTGCTGGTTTTCTTTGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: GTSESTAGRRLV*TISRLLVFFVF Trigger: GAAGACAAAGAAAACCAGCAAGCGGCTAATGGTCCAAACCAGCCGTCTGCCCGCCGTGGATTCCGACGTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032309.13 ENSMUST00000087865.4 |
||