Pregenerated sensors for YBX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018554Ensembl transcript IDs: ENSMUST00000018698.12, ENSMUST00000108601.3, ENSMUST00000149194.8
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAAAAGTGGGGAGGGGGATaGTGGGTAGAGTCAGTTGGA | + |
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Preference number: 2 (lower is better) Translates to: RNNKDGSLPSTHARGEGKKWGGG*WVESVG Trigger: TCCAACTGACTCTACCCAGCATCCCCCTCCCCACTT...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 52% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR GCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTTCTGCGGCTATAGGCTaGCGGGGGCCAGGGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCSAAIG*RGPGGC Trigger: GCAGCCCCCTGGCCCCCGGCAGCCTATAGCCGCAGA...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR GCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTAGGCGCGGAGGTCTCTaGGGCTATAGGCTGCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSRRGGL*GYRLPG Trigger: CCCCGGCAGCCTATAGCCGCAGAGACCTCCGCGCCT...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTTGCCACCATAGGTGGTaGGGCAGCTGGGCGAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSCHHRW*GSWARP Trigger: CGGCCTCGCCCAGCTGCCCCACCACCTATGGTGGCA...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 |
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| CDS-3UTR CCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTTGGGCTGTTGCTGGTTaGGGGGCCGAGGGCCTCGCA | + |
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Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSWAVAG*GAEGLA Trigger: TGCGAGGCCCTCGGCCCCCCAACCAGCAACAGCCCA...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR GCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAATCTGCGGCTATAGGCTaGCGGGGGCCAGGGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKSAAIG*RGPGGC Trigger: GCAGCCCCCTGGCCCCCGGCAGCCTATAGCCGCAGA...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR GCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGCCCAGGACTTGGATTaGCAGCACCGGCTTGTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSAQDLD*QHRLVR Trigger: GCGGACAAGCCGGTGCTGGCAATCCAAGTCCTGGGC...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018698.12 |
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| CDS-3UTR CCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAATGCCACCATAGGTGGTaGGGCAGCTGGGCGAGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKCHHRW*GSWARP Trigger: CGGCCTCGCCCAGCTGCCCCACCACCTATGGTGGCA...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 |
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| CDS-3UTR CCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAATGGGCTGTTGCTGGTTaGGGGGCCGAGGGCCTCGCA | + |
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Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKWAVAG*GAEGLA Trigger: TGCGAGGCCCTCGGCCCCCCAACCAGCAACAGCCCA...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTGGTAGGCTGTTGGGGTaGCCTGGGGCGGAAAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCGRLLG*PGAERP Trigger: AGGCCTTTCCGCCCCAGGCCACCCCAACAGCCTACC...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR TCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTAGGTTCTGTCCCACCTaGGGGAGCCTCTGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSRFCPT*GSLCHH Trigger: ATGGTGGCAGAGGCTCCCTCAGGTGGGACAGAACCT...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAAGGTAGGCTGTTGGGGTaGCCTGGGGCGGAAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKGRLLG*PGAERP Trigger: AGGCCTTTCCGCCCCAGGCCACCCCAACAGCCTACC...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR TCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTAGGTTCTGTCCCACCTaGGGGAGCCTCTGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCRFCPT*GSLCHH Trigger: ATGGTGGCAGAGGCTCCCTCAGGTGGGACAGAACCT...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTACTGTGCCCAGGACTTaGATTGCCAGCACCGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCTVPRT*IASTGL Trigger: CAAGCCGGTGCTGGCAATCCAAGTCCTGGGCACAGT...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018698.12 |
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| CDS-3UTR CCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTATAGAAGAAGGGTGGTaGGCGCCGTCGTCTAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCIEEGW*APSSRS Trigger: CGACCTAGACGACGGCGCCCACCACCCTTCTTCTAT...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAAATAGAAGAAGGGTGGTaGGCGCCGTCGTCTAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKIEEGW*APSSRS Trigger: CGACCTAGACGACGGCGCCCACCACCCTTCTTCTAT...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR GCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTATCACCCTCCAATGGTaGTGTCTCCTTGGGTTCTAC | + |
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Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSITLQW*CLLGFY Trigger: GTAGAACCCAAGGAGACAGCACCATTGGAGGGTGAT...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTATGGTGCTGTCTCCTTaGGTTCTACCCCATCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCMVLSP*VLPHQS Trigger: GCTCTGATGGGGTAGAACCCAAGGAGACAGCACCAT...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTTTGATCACCCTCCAATaGTGCTGTCTCCTTGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSLITLQ*CCLLGF Trigger: GAACCCAAGGAGACAGCACCATTGGAGGGTGATCAA...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAAATGGTGCTGTCTCCTTaGGTTCTACCCCATCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKMVLSP*VLPHQS Trigger: GCTCTGATGGGGTAGAACCCAAGGAGACAGCACCAT...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTTTGATCACCCTCCAATaGTGCTGTCTCCTTGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCLITLQ*CCLLGF Trigger: GAACCCAAGGAGACAGCACCATTGGAGGGTGATCAA...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR GCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAAATCACCCTCCAATGGTaGTGTCTCCTTGGGTTCTAC | + |
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Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKITLQW*CLLGFY Trigger: GTAGAACCCAAGGAGACAGCACCATTGGAGGGTGAT...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR CCA 90 bp | CGGAACAATAAGGATGGATCCCTTCCTTCAACCCATGCTAGGGGAGAGGGAAAATTGATCACCCTCCAATaGTGCTGTCTCCTTGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: RNNKDGSLPSTHARGEGKLITLQ*CCLLGF Trigger: GAACCCAAGGAGACAGCACCATTGGAGGGTGATCAA...TTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 ENSMUST00000149194.8 |
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| CDS-3UTR TCA 90 bp | GGGGGATGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTTTAATAGCTGTCTGGTaGACAAAGACATCCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: GGCWVESVGNWQIPDGSSLIAVW*TKTSSL Trigger: CAAGGAGGATGTCTTTGTTCACCAGACAGCTATTAA...AGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 |
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| CDS-3UTR TCA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTTTAATAGCTGTCTGGTaGACAAAGACATCCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: CWVESVGNWQIPDGSSGCLIAVW*TKTSSL Trigger: CAAGGAGGATGTCTTTGTTCACCAGACAGCTATTAA...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018698.12 ENSMUST00000108601.3 |
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| CDS-3UTR CAA 90 bp | TGCTGGGTAGAGTCAGTTGGAAACTGGCAGATACCAGATGGTAGCTCTGGGTGTTGCCCAGGACTTGGATaGCCAGCACCGGCTTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: CWVESVGNWQIPDGSSGCCPGLG*PAPACP Trigger: CGGACAAGCCGGTGCTGGCAATCCAAGTCCTGGGCA...ACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018698.12 |
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