RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for XRRA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035211

Ensembl transcript IDs: ENSMUST00000036155.10, ENSMUST00000207855.2, ENSMUST00000208354.2

Found 251 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTaGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGAC +
Preference number: 1 (lower is better)
Translates to: LHHSLLLLGQPPGAA*PGSEARSCCAPHTD
Trigger: GTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
3UTR CCA 90 bp ACTCGTAGGGTCAAAGTGTGTGATCATATCCCTCTGGTTGGCCACTaGTACTTCCAATGTCTTGAAGTCTCCATATTTCACGTAGACCAT +
Preference number: 1 (lower is better)
Translates to: TRRVKVCDHIPLVGH*YFQCLEVSIFHVDH
Trigger: ATGGTCTACGTGAAATATGGAGACTTCAAGACATTGGAAGTACCAGTGGCCAACCAGAGGGATATGATCACACACTTTGACCCTACGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR TCA 90 bp TTTCCCCTAAGGAGCCCTTGCAAATCACAGAGAGACGAGAACAAATaGCTAGTCCAGAGATTTCCTCTTCTCATTTATATGCTGCATCCT +
Preference number: 1 (lower is better)
Translates to: FPLRSPCKSQRDENK*LVQRFPLLIYMLHP
Trigger: AGGATGCAGCATATAAATGAGAAGAGGAAATCTCTGGACTAGTCATTTGTTCTCGTCTCTCTGTGATTTGCAAGGGCTCCTTAGGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR TCA 90 bp GACAGACAAGGACAGAAGATTCCTAGCCTGGCTGCTGTATCTGGTTaGGCCACATTGAGTTTTATTACACATCAAAGTATTCATTACTGT +
Preference number: 1 (lower is better)
Translates to: DRQGQKIPSLAAVSG*ATLSFITHQSIHYC
Trigger: ACAGTAATGAATACTTTGATGTGTAATAAAACTCAATGTGGCTCAACCAGATACAGCAGCCAGGCTAGGAATCTTCTGTCCTTGTCTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR TCA 90 bp GACAGAAGATTCCTAGCCTGGCTGCTGTATCTGGTTGAGCCACATTaGGTTTTATTACACATCAAAGTATTCATTACTGTGAGATGCAAA +
Preference number: 1 (lower is better)
Translates to: DRRFLAWLLYLVEPH*VLLHIKVFITVRCK
Trigger: TTTGCATCTCACAGTAATGAATACTTTGATGTGTAATAAAACTCAATGTGGCTCAACCAGATACAGCAGCCAGGCTAGGAATCTTCTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR-3UTR CCA 90 bp AGGCAAGCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTGGAAGAATTCCACTCTaGGCTGCTCCCCTTGGGGCA +
Preference number: 2 (lower is better)
Translates to: RQAEHRQESMPSGCWGWGGRIPL*AAPLGA
Trigger: TGCCCCAAGGGGAGCAGCCCAGAGTGGAATTCTTCC...ACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGCTTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR-3UTR CCA 90 bp GCAAGCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTCCCCTGGCTGCTGTATCTaGTTGAGCCACATTGAGTTT +
Preference number: 2 (lower is better)
Translates to: ASRTQARKHAFWLLGLGSPGCCI*LSHIEF
Trigger: AAACTCAATGTGGCTCAACCAGATACAGCAGCCAGG...GGACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR-3UTR TCA 90 bp GGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTCCTGCTCAACGGTTTTGTACTTCCAATGTCTTaGAGTCTCCATATTTCACGT +
Preference number: 2 (lower is better)
Translates to: GKKACLLAAGAGVLLNGFVLPMS*SLHISR
Trigger: ACGTGAAATATGGAGACTTCAAGACATTGGAAGTAC...AAAACCGTTGAGCAGGACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR-3UTR TCA 90 bp TCCACTCTGGGCTGCTCCCCTTGGGGCAGGCTCTCTGACAGACAAGGACAGAAGCTGGTTGAGCCACATTaGGTTTTATTACACATCAAA +
Preference number: 2 (lower is better)
Translates to: STLGCSPWGRLSDRQGQKLVEPH*VLLHIK
Trigger: TTTGATGTGTAATAAAACTCAATGTGGCTCAACCAG...CTTCTGTCCTTGTCTGTCAGAGAGCCTGCCCCAAGGGGAGCAGCCCAGAGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR-3UTR CAA 90 bp CCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATCAGGGCGCAGAGCCCTaGGGGAGGGCGGTGTGCAGC +
Preference number: 3 (lower is better)
Translates to: PPGAAWPGSEARSCCAPHQGAEP*GRAVCS
Trigger: GCTGCACACCGCCCTCCCCAAGGGCTCTGCGCCCTG...ATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
3UTR GCA 72 bp CCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTaGTGTGCTCCCCATACTGACCACGGAGCGAAATGG +
Preference number: 3 (lower is better)
Translates to: PGAAWPGSEARS*CAPHTDHGAKW
Trigger: CCATTTCGCTCCGTGGTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
3UTR GCA 72 bp ACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTaGAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTG +
Preference number: 3 (lower is better)
Translates to: TPLFIAAGPATR*SLAGLRGKVLL
Trigger: CAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
3UTR CCA 72 bp TCCTGCTGTGCTCCCCATACTGACCACGGAGCGAAATaGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACA +
Preference number: 3 (lower is better)
Translates to: SCCAPHTDHGAK*SPSPLCSGLGT
Trigger: TGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAGTATGGGGAGCACAGCAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
3UTR-3UTR CAA 90 bp CCACTCTGGGCTGCTCCCCTTGGGGCAGGCTCTCTGACAGACAAGGACAGAAGATCCCCTAAGGAGCCCTaGCAAATCACAGAGAGACGA +
Preference number: 3 (lower is better)
Translates to: PLWAAPLGAGSLTDKDRRSPKEP*QITERR
Trigger: TCGTCTCTCTGTGATTTGCAAGGGCTCCTTAGGGGA...TCTTCTGTCCTTGTCTGTCAGAGAGCCTGCCCCAAGGGGAGCAGCCCAGAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR CCA 72 bp GCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTaGGGCTGGGGTCCTGCTCAACGGTTTTCAGGTTTG +
Preference number: 3 (lower is better)
Translates to: AEHRQESMPSGC*GWGPAQRFSGL
Trigger: CAAACCTGAAAACCGTTGAGCAGGACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR TCA 72 bp TGGGAGAAACTTTATCCTCAGGGCAAGGTATTTGGATaGGGCCTAGAGCCAGCAGAAGGCAAGCAGAACACA +
Preference number: 3 (lower is better)
Translates to: WEKLYPQGKVFG*GLEPAEGKQNT
Trigger: TGTGTTCTGCTTGCCTTCTGCTGGCTCTAGGCCTCATCCAAATACCTTGCCCTGAGGATAAAGTTTCTCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR-3UTR CAA 90 bp TCCATATTTCACGTAGACCATCTTGATGCCATTGAACGCAAGCTCCAGTTCCTTACAGACGTAAAATGTTaGAAGTCCTTTTCCTTTGCC +
Preference number: 3 (lower is better)
Translates to: SIFHVDHLDAIERKLQFLTDVKC*KSFSFA
Trigger: GGCAAAGGAAAAGGACTTCAAACATTTTACGTCTGT...AAGGAACTGGAGCTTGCGTTCAATGGCATCAAGATGGTCTACGTGAAATATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR TCA 72 bp AGGAGCCCTTGCAAATCACAGAGAGACGAGAACAAATaGCTAGTCCAGAGATTTCCTCTTCTCATTTATATG +
Preference number: 3 (lower is better)
Translates to: RSPCKSQRDENK*LVQRFPLLIYM
Trigger: CATATAAATGAGAAGAGGAAATCTCTGGACTAGTCATTTGTTCTCGTCTCTCTGTGATTTGCAAGGGCTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR-3UTR CAA 90 bp CCTGGCTGCTGTATCTGGTTGAGCCACATTGAGTTTTATTACACATCAAAGTATTGTAGACAAATTCCTTaGGACAAGGCTGGGTTTGTA +
Preference number: 3 (lower is better)
Translates to: PGCCIWLSHIEFYYTSKYCRQIP*DKAGFV
Trigger: TACAAACCCAGCCTTGTCCAAAGGAATTTGTCTACA...ATACTTTGATGTGTAATAAAACTCAATGTGGCTCAACCAGATACAGCAGCCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR TCA 72 bp TCAGAGTATAAAGTGGGTCATGCACAAAATCAATCATaGTTAACATTAGATGCCAAGCTAGTTACTCGTAGG +
Preference number: 3 (lower is better)
Translates to: SEYKVGHAQNQS*LTLDAKLVTRR
Trigger: CCTACGAGTAACTAGCTTGGCATCTAATGTTAATCATGATTGATTTTGTGCATGACCCACTTTATACTCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
3UTR TCA 72 bp GATTTCCTCTTCTCATTTATATGCTGCATCCTAAAATaGGTCTGGTTTCTTTGTAGACAAATTCCTTTGGAC +
Preference number: 3 (lower is better)
Translates to: DFLFSFICCILK*VWFLCRQIPLD
Trigger: GTCCAAAGGAATTTGTCTACAAAGAAACCAGACTCATTTTAGGATGCAGCATATAAATGAGAAGAGGAAATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR TCA 90 bp GCCAGCCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCGTGCGCGGAACTCCTTaGGCAGCCTCTTGGCCTCTC +
Preference number: 4 (lower is better)
Translates to: ASHQVQPGRAPRQGPAVLVRGTP*AASWPL
Trigger: GAGAGGCCAAGAGGCTGCTCAAGGAGTTCCGCGCAC...GAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp GCCAGCCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCGATTTGGTCCCTCTGTaGCCCAGTCCCCCGACCCAT +
Preference number: 4 (lower is better)
Translates to: ASHQVQPGRAPRQGPAVLDLVPL*PSPPTH
Trigger: ATGGGTCGGGGGACTGGGTCACAGAGGGACCAAATC...GAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ACTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGCGGGTAGGCGGCCTTaGCGGCGGGCTGGCAGCGAA +
Preference number: 4 (lower is better)
Translates to: TDHGAKWSPSPLCSGLGTAGRRP*RRAGSE
Trigger: TTCGCTGCCAGCCCGCCGCCAAGGCCGCCTACCCGC...TGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp GCCAGCCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCGGTCCCGCATGCGAATaGGGATATCATCCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: ASHQVQPGRAPRQGPAVLGPACE*GYHPAA
Trigger: AGCTGCTGGATGATATCCTCATTCGCATGCGGGACC...GAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp GTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCGGCAGAACTCGTCCATaGACTCGAGGAAGCGGCCCA +
Preference number: 4 (lower is better)
Translates to: VQPGRAPRQGPAVLPILTGRTRP*TRGSGP
Trigger: TGGGCCGCTTCCTCGAGTTCATGGACGAGTTCTGCC...GGTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp GCCAGCCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCGACGGCATCCTCCTTTaGGATCTTGTTGTAGGCCAG +
Preference number: 4 (lower is better)
Translates to: ASHQVQPGRAPRQGPAVLDGILL*DLVVGQ
Trigger: CTGGCCTACAACAAGATCGCAAAGGAGGATGCCGTC...GAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp CCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTATATCATCCAGCAGCTaGGCTCGGGTCTTCCGTGGG +
Preference number: 4 (lower is better)
Translates to: PGAAWPGSEARSCCAPHTISSSS*ARVFRG
Trigger: CCCACGGAAGACCCGAGCGCAGCTGCTGGATGATAT...AGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCGAGAAGTGTCTTCAGTaGAGTGCTCGGGCTCCGGCA +
Preference number: 4 (lower is better)
Translates to: MEPKPPLFRAGHSPGRRAEKCLQ*SARAPA
Trigger: TGCCGGAGCCCGAGCACTCCACTGAAGACACTTCTC...GGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp CCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATTGGAGTCGGAACAGATaGGAGGCATCGGCACAAAGG +
Preference number: 4 (lower is better)
Translates to: PPGAAWPGSEARSCCAPHWSRNR*EASAQR
Trigger: CCTTTGTGCCGATGCCTCCCATCTGTTCCGACTCCA...ATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp CCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGGGCAGCTCATTCACCTaGGTCAGGAAGATGGACTCC +
Preference number: 4 (lower is better)
Translates to: PKPPLFRAGHSPGRRALGGSSFT*VRKMDS
Trigger: GGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCC...CCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp CTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCGAGTCGCTGGCCGTaGGCTCCTGGCAGAACTCGT +
Preference number: 4 (lower is better)
Translates to: LTTERNGAQAPSVQGWAQSSRWP*APGRTR
Trigger: ACGAGTTCTGCCAGGAGCCCACGGCCAGCGACTCGA...CTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp GAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTACTTCTTCAGTCTCCTaGGCCCAGCCAGACTGGCAA +
Preference number: 4 (lower is better)
Translates to: EPKPPLFRAGHSPGRRALTSSVS*AQPDWQ
Trigger: TTGCCAGTCTGGCTGGGCTCAGGAGACTGAAGAAGT...AAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp ATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCGGTCTTCACCTTCCGTaGCTCCTTCCGAGGCATCAA +
Preference number: 4 (lower is better)
Translates to: MEPKPPLFRAGHSPGRRAGLHLP*LLPRHQ
Trigger: TTGATGCCTCGGAAGGAGTCACGGAAGGTGAAGACC...GGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp CACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGTGGAGGAGCGGCAGATaGGCGGCTGCTTCAGCATTC +
Preference number: 4 (lower is better)
Translates to: HGAKWSPSPLCSGLGTVQWRSGR*AAASAF
Trigger: GAATGCTGAAGCAGCCGCTCATCTGCCGCTCCTCCA...CTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp ACTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGGAGGGGAAGAGAGCTaGTGGCAGGACGGCATCCTC +
Preference number: 4 (lower is better)
Translates to: TDHGAKWSPSPLCSGLGTGGEES*WQDGIL
Trigger: GAGGATGCCGTCCTGCCAGCAGCTCTCTTCCCCTCC...TGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp ACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTTCGAACTAAGCGGATaGCCAGGCGATCCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: TRCSLAGLRGKVLLCSPYFELSG*PGDPGG
Trigger: TCCTCCAGGATCGCCTGGGCATCCGCTTAGTTCGAA...GTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCAGGGTCTCCAGCGCTaGGAACCTCAGGATGTACTT +
Preference number: 4 (lower is better)
Translates to: GAAWPGSEARSCCAPHTDQGLQR*EPQDVL
Trigger: AAGTACATCCTGAGGTTCCCAGCGCTGGAGACCCTG...GTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACGGCTGCAGCTCTTTCTaGGGATTTGGTCCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: TRCSLAGLRGKVLLCSPYGCSSF*GFGPSV
Trigger: CACAGAGGGACCAAATCCCCAGAAAGAGCTGCAGCC...GTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCGTGGGCGGTGGAGGATaGCAGCTCATTCACCTGGGT +
Preference number: 4 (lower is better)
Translates to: DHGAKWSPSPLCSGLGTVVGGGG*QLIHLG
Trigger: ACCCAGGTGAATGAGCTGCCATCCTCCACCGCCCAC...GACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTTTCCCTGTGGGCGGTaGAGGATGGCAGCTCATTCA +
Preference number: 4 (lower is better)
Translates to: TRCSLAGLRGKVLLCSPYFPCGR*RMAAHS
Trigger: TGAATGAGCTGCCATCCTCCACCGCCCACAGGGAAA...GTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTGCCTGTGCGTTCTTCTaGATGCCCTTTGGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: GAQAPSVQGWAQSRAQSPACAFF*MPFGSK
Trigger: TTTGGAGCCAAAGGGCATCCAGAAGAACGCACAGGC...AGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp CCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGTTCTTCTGGCTTTCCTaGCCTTCGGTGGATGCCTTA +
Preference number: 4 (lower is better)
Translates to: PKPPLFRAGHSPGRRALGFFWLS*PSVDAL
Trigger: TAAGGCATCCACCGAAGGTCAGGAAAGCCAGAAGAA...CCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCGATCTGATGGCTTCCTaGCAGAGTGGTGCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: VQPGRAPRQGPAVLPILTDLMAS*QSGASA
Trigger: TGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATC...GGTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACGACAGCCATGTTAGGTaGCAGAGAGGTGAGCCCATT +
Preference number: 4 (lower is better)
Translates to: GAAWPGSEARSCCAPHTDDSHVR*QRGEPI
Trigger: AATGGGCTCACCTCTCTGCCACCTAACATGGCTGTC...GTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCCTCTTTCTGGGGATTTaGTCCCTCTGTGACCCAGTC +
Preference number: 4 (lower is better)
Translates to: VQPGRAPRQGPAVLPILTLFLGI*SLCDPV
Trigger: GACTGGGTCACAGAGGGACCAAATCCCCAGAAAGAG...GGTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCAAGATATCTCAGCTCTaGGAAAGGCGGGGCCAGTGT +
Preference number: 4 (lower is better)
Translates to: VQPGRAPRQGPAVLPILTKISQL*ERRGQC
Trigger: ACACTGGCCCCGCCTTTCCCAGAGCTGAGATATCTT...GGTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACATGCCCAGGCGATCCTaGAGGAAGCTTTTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: TRCSLAGLRGKVLLCSPYMPRRS*RKLFSS
Trigger: ACTGCTGAAAAGCTTCCTCCAGGATCGCCTGGGCAT...GTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp CCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGAATGCTTCGGCACCTTaGGGATGTAGGTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: PKPPLFRAGHSPGRRALGNASAP*GCRSSP
Trigger: AGGTGAAGACCTACATCCCCAAGGTGCCGAAGCATT...CCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp GGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCTTCTTGCTTGTCAGTaGTGTCATGGATGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: GAAWPGSEARSCCAPHTDLLACQ*CHGCLL
Trigger: CAGGAGGCATCCATGACATCACTGACAAGCAAGAAG...GTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp GAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTAAACATGGGAGGAAGTaGGCATACCTTGGCTGTCTC +
Preference number: 4 (lower is better)
Translates to: EPKPPLFRAGHSPGRRALKHGRK*AYLGCL
Trigger: GAGACAGCCAAGGTATGCTCACTTCCTCCCATGTTT...AAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp AAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGGAGCTCTCTGGGTGCTGTTaGTGGTCTCCTTTGGTCATT +
Preference number: 4 (lower is better)
Translates to: KPPLFRAGHSPGRRALGELSGCC*WSPLVI
Trigger: AATGACCAAAGGAGACCATCAACAGCACCCAGAGAG...CTCCCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp CCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTCTGCACCTTTCTTCATaGTGCCTTTCCGGACCACTA +
Preference number: 4 (lower is better)
Translates to: PGAAWPGSEARSCCAPHTLHLSS*CLSGPL
Trigger: TAGTGGTCCGGAAAGGCAGCATGAAGAAAGGTGCAG...AGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp GCCAGCCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCTTTGGTCATTCACTaGCTCCAAATTTTCCCTGTG +
Preference number: 4 (lower is better)
Translates to: ASHQVQPGRAPRQGPAVLPLVIH*LQIFPV
Trigger: CACAGGGAAAATTTGGAGGCAGTGAATGACCAAAGG...GAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp AGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGGAGGTCAAATATCCACATCTaGGGCTGCAGCTCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: SPLCSGLGTVQGAEPLGRSNIHI*GCSSFW
Trigger: CCAGAAAGAGCTGCAGCCCCAGATGTGGATATTTGA...CCTCCCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ACTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGGCGGGGCCAGTGTCTaGTTCCTTGCTTTCAGTGAC +
Preference number: 4 (lower is better)
Translates to: TDHGAKWSPSPLCSGLGTGGASV*FLAFSD
Trigger: GTCACTGAAAGCAAGGAACCAGACACTGGCCCCGCC...TGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCTTCTGGGCCCTCATTaGCAAACAGTGCCTCGTGAG +
Preference number: 4 (lower is better)
Translates to: DHGAKWSPSPLCSGLGTVLLGPH*QTVPRE
Trigger: CTCACGAGGCACTGTTTGCCAATGAGGGCCCAGAAG...GACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCTGGACTCCGTACTCTTaGCGTCATCATCTGATGGGT +
Preference number: 4 (lower is better)
Translates to: MEPKPPLFRAGHSPGRRAWTPYS*RHHLMG
Trigger: ACCCATCAGATGATGACGCCAAGAGTACGGAGTCCA...GGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCTCCTCTTTGTCTCTCTaGGTGCTGTTGATGGTCTCC +
Preference number: 4 (lower is better)
Translates to: VQPGRAPRQGPAVLPILTSSLSL*VLLMVS
Trigger: GGAGACCATCAACAGCACCCAGAGAGACAAAGAGGA...GGTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp CACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGTGCTTCAGCATTCGATaGAGGGCCTGTGCGTTCTTC +
Preference number: 4 (lower is better)
Translates to: HGAKWSPSPLCSGLGTVQCFSIR*RACAFF
Trigger: GAAGAACGCACAGGCCCTGCATCGAATGCTGAAGCA...CTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp CCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACTGGCAAAGCAGCTaGGATTGGACAGTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: PGAAWPGSEARSCCAPHTDWQSS*DWTVCC
Trigger: ACAACAAACTGTCCAATCCCAGCTGCTTTGCCAGTC...AGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp AGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGGAGGACCAAAGGGTTGTTATaGAAGACAAGCTCACAGAGG +
Preference number: 4 (lower is better)
Translates to: SPLCSGLGTVQGAEPLGRTKGLL*KTSSQR
Trigger: CCTCTGTGAGCTTGTCTTCCATAACAACCCTTTGGT...CCTCCCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp ACTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACACCTGGGTCAGGAAGATaGACTCCGTACTCTTGGCGT +
Preference number: 4 (lower is better)
Translates to: TDHGAKWSPSPLCSGLGTPGSGR*TPYSWR
Trigger: ACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGG...TGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp CACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGCAACACAGTGCCCAGTaGAGCCTCAGTAACATTCCG +
Preference number: 4 (lower is better)
Translates to: HGAKWSPSPLCSGLGTVQQHSAQ*SLSNIP
Trigger: CGGAATGTTACTGAGGCTCCACTGGGCACTGTGTTG...CTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp TTGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCACTCTTTCGAGTCGCTaGCCGTGGGCTCCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: LLYTTLYCCWASHQVQPGTLSSR*PWAPGR
Trigger: TCTGCCAGGAGCCCACGGCCAGCGACTCGAAAGAGT...GCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp CACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGATCCACATCTGGGGCTaGAGCTCTTTCTGGGGATTT +
Preference number: 4 (lower is better)
Translates to: HGAKWSPSPLCSGLGTVQIHIWG*SSFWGF
Trigger: AAATCCCCAGAAAGAGCTGCAGCCCCAGATGTGGAT...CTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp TGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCCTCGATGCAGGGCCTGTaGGTTCTTCTGGATGCCCTT +
Preference number: 4 (lower is better)
Translates to: CSTPLFIAAGPATRCSLASMQGL*VLLDAL
Trigger: AAGGGCATCCAGAAGAACGCACAGGCCCTGCATCGA...GGCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp CCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTCGGACAATCTTGTTTTaGTCCAGGCTCAACTTCTTC +
Preference number: 4 (lower is better)
Translates to: PGAAWPGSEARSCCAPHTRTILF*SRLNFF
Trigger: GAAGAAGTTGAGCCTGGACCAAAACAAGATTGTCCG...AGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp AAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGGAGGAAGTGAGCATACCTTaGCTGTCTCTGAGGTTGAAA +
Preference number: 4 (lower is better)
Translates to: KPPLFRAGHSPGRRALGEEVSIP*LSLRLK
Trigger: TTTCAACCTCAGAGACAGCCAAGGTATGCTCACTTC...CTCCCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCCTTTTCCTTTGCCTTaGAGAACTTCATGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: DHGAKWSPSPLCSGLGTVPFPLP*RTSCRS
Trigger: TGAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAAGG...GACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTCAGTACGGTATAATTTaGTTGCTCATCAGGTGTCTC +
Preference number: 4 (lower is better)
Translates to: EPKPPLFRAGHSPGRRALQYGII*LLIRCL
Trigger: GAGACACCTGATGAGCAACCAAATTATACCGTACTG...AAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp GAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGAAGAATCTCAAACATaGGAGGAAGTGAGCATACCT +
Preference number: 4 (lower is better)
Translates to: EPKPPLFRAGHSPGRRALEESQT*EEVSIP
Trigger: AGGTATGCTCACTTCCTCCCATGTTTGAGATTCTTC...AAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp TGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCCGAAGCTTTTCAGCAGTaGTGGGATCCCTCGTGTGTG +
Preference number: 4 (lower is better)
Translates to: CSTPLFIAAGPATRCSLAEAFQQ*WDPSCV
Trigger: CACACACGAGGGATCCCACCACTGCTGAAAAGCTTC...GGCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp AGGCAAGCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTGATCTGATGGCTTCCTaGCAGAGTGGTGCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: RQAEHRQESMPSGCWGWGDLMAS*QSGASA
Trigger: TGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATC...ACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGCTTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR CCA 90 bp TTGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCCAGCACACGGAGATGTaGCAGAATCCCCAGATCACA +
Preference number: 4 (lower is better)
Translates to: LLYTTLYCCWASHQVQPGQHTEM*QNPQIT
Trigger: TGTGATCTGGGGATTCTGCCACATCTCCGTGTGCTG...GCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp AGGCAAGCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTTTCTTCTGGCTTTCCTaGCCTTCGGTGGATGCCTTA +
Preference number: 4 (lower is better)
Translates to: RQAEHRQESMPSGCWGWGFFWLS*PSVDAL
Trigger: TAAGGCATCCACCGAAGGTCAGGAAAGCCAGAAGAA...ACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGCTTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR TCA 90 bp TTGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCGATAGTGCAAAGATCTaGTGGCTTCCTGGCAGAGTG +
Preference number: 4 (lower is better)
Translates to: LLYTTLYCCWASHQVQPGDSAKI*WLPGRV
Trigger: CACTCTGCCAGGAAGCCATCAGATCTTTGCACTATC...GCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp ATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCAGAATTCCAATGTCTTaGAGTCTCCATATTTCACGT +
Preference number: 4 (lower is better)
Translates to: MEPKPPLFRAGHSPGRRARIPMS*SLHISR
Trigger: ACGTGAAATATGGAGACTTCAAGACATTGGAATTCT...GGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp TGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCCCCTCAGTCAGGCTGTTaGAGGAAAGGTCCAAGAATT +
Preference number: 4 (lower is better)
Translates to: CSTPLFIAAGPATRCSLAPQSGC*RKGPRI
Trigger: AATTCTTGGACCTTTCCTTCAACAGCCTGACTGAGG...GGCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR GCA 90 bp AGGCAAGCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTCTGCACCTTTCTTCATaGTGCCTTTCCGGACCACTA +
Preference number: 4 (lower is better)
Translates to: RQAEHRQESMPSGCWGWGLHLSS*CLSGPL
Trigger: TAGTGGTCCGGAAAGGCAGCATGAAGAAAGGTGCAG...ACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGCTTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR GCA 90 bp CACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGTCAGGATGTACTTCTTaGTTGTCAGTGATGTCATGG +
Preference number: 4 (lower is better)
Translates to: HGAKWSPSPLCSGLGTVQSGCTS*LSVMSW
Trigger: CCATGACATCACTGACAAGCAAGAAGTACATCCTGA...CTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp ACTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAAGAACTGGAAATGTGTaGAAGACATCTAGAGGTAGC +
Preference number: 4 (lower is better)
Translates to: TDHGAKWSPSPLCSGLGTRTGNV*KTSRGS
Trigger: GCTACCTCTAGATGTCTTTCACACATTTCCAGTTCT...TGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CCA 90 bp TTGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCGTTGATGGTCTCCTTTaGTCATTCACTGCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: LLYTTLYCCWASHQVQPGVDGLL*SFTASK
Trigger: TTTGGAGGCAGTGAATGACCAAAGGAGACCATCAAC...GCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR TCA 90 bp CTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTGATTTGGTCCCTCTGTaGCCCAGTCCCCCGACCCAT +
Preference number: 4 (lower is better)
Translates to: LLWLIQFCLLPSRALVIIDLVPL*PSPPTH
Trigger: ATGGGTCGGGGGACTGGGTCACAGAGGGACCAAATC...AATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR TCA 90 bp GTCTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTAACTTCTTCAGTCTCCTaGGCCCAGCCAGACTGGCAA +
Preference number: 4 (lower is better)
Translates to: VSCGLFSFVCYHLGLLSLTSSVS*AQPDWQ
Trigger: TTGCCAGTCTGGCTGGGCTCAGGAGACTGAAGAAGT...TAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR GCA 90 bp CCAGTTCCTTTAGAACTGGAAATGTGTGAAAGACATCTAGAGGTAGCAGGTTTTACAGGATTAGTTCCCTaGCCGGGAGCCTTGGAGAAC +
Preference number: 4 (lower is better)
Translates to: PVPLELEMCERHLEVAGFTGLVP*PGALEN
Trigger: GTTCTCCAAGGCTCCCGGGCAGGGAACTAATCCTGT...AAAACCTGCTACCTCTAGATGTCTTTCACACATTTCCAGTTCTAAAGGAACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR CCA 90 bp GTCTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTAGACAGCCATGTTAGGTaGCAGAGAGGTGAGCCCATT +
Preference number: 4 (lower is better)
Translates to: VSCGLFSFVCYHLGLLSLDSHVR*QRGEPI
Trigger: AATGGGCTCACCTCTCTGCCACCTAACATGGCTGTC...TAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR TCA 90 bp GTCTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTAGATAGTGCAAAGATCTaGTGGCTTCCTGGCAGAGTG +
Preference number: 4 (lower is better)
Translates to: VSCGLFSFVCYHLGLLSLDSAKI*WLPGRV
Trigger: CACTCTGCCAGGAAGCCATCAGATCTTTGCACTATC...TAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp TCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCGATCTGATGGCTTCCTaGCAGAGTGGTGCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: SCGLFSFVCYHLGLLSLFDLMAS*QSGASA
Trigger: TGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATC...GAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp TCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCCTCTTTCTGGGGATTTaGTCCCTCTGTGACCCAGTC +
Preference number: 4 (lower is better)
Translates to: SCGLFSFVCYHLGLLSLFLFLGI*SLCDPV
Trigger: GACTGGGTCACAGAGGGACCAAATCCCCAGAAAGAG...GAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp TGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCTGGCTGCAGCTCTTTCTaGGGATTTGGTCCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: CGLFSFVCYHLGLLSLFSGCSSF*GFGPSV
Trigger: CACAGAGGGACCAAATCCCCAGAAAGAGCTGCAGCC...AGAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR TCA 90 bp TCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTTCTTCTGGCTTTCCTaGCCTTCGGTGGATGCCTTA +
Preference number: 4 (lower is better)
Translates to: SCGLFSFVCYHLGLLSLFFFWLS*PSVDAL
Trigger: TAAGGCATCCACCGAAGGTCAGGAAAGCCAGAAGAA...GAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR GCA 90 bp CTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTGCACCTTTCTTCATaGTGCCTTTCCGGACCACTA +
Preference number: 4 (lower is better)
Translates to: LLWLIQFCLLPSRALVIILHLSS*CLSGPL
Trigger: TAGTGGTCCGGAAAGGCAGCATGAAGAAAGGTGCAG...AATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR GCA 90 bp TCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCATCCACATCTGGGGCTaGAGCTCTTTCTGGGGATTT +
Preference number: 4 (lower is better)
Translates to: SCGLFSFVCYHLGLLSLFIHIWG*SSFWGF
Trigger: AAATCCCCAGAAAGAGCTGCAGCCCCAGATGTGGAT...GAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp TGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCTCAGCACACGGAGATGTaGCAGAATCCCCAGATCACA +
Preference number: 4 (lower is better)
Translates to: CGLFSFVCYHLGLLSLFSQHTEM*QNPQIT
Trigger: TGTGATCTGGGGATTCTGCCACATCTCCGTGTGCTG...AGAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp GGCTCTTGTCATTATTCTCTAACTAGCACAGTACAGTTCTTTACAAGAATTAACCAGGGTCTCCAGCGCTaGGAACCTCAGGATGTACTT +
Preference number: 4 (lower is better)
Translates to: GSCHYSLTSTVQFFTRINQGLQR*EPQDVL
Trigger: AAGTACATCCTGAGGTTCCCAGCGCTGGAGACCCTG...GTTAATTCTTGTAAAGAACTGTACTGTGCTAGTTAGAGAATAATGACAAGAGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp CTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCCCTTTTCCTTTGCCTTaGAGAACTTCATGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: LWLIQFCLLPSRALVIILPFPLP*RTSCRS
Trigger: TGAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAAGG...GAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp CTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTTCAAATATCCACATCTaGGGCTGCAGCTCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: LLWLIQFCLLPSRALVIISNIHI*GCSSFW
Trigger: CCAGAAAGAGCTGCAGCCCCAGATGTGGATATTTGA...AATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR TCA 90 bp GGCTCTTGTCATTATTCTCTAACTAGCACAGTACAGTTCTTTACAAGAATTAACCTTCTTGCTTGTCAGTaGTGTCATGGATGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: GSCHYSLTSTVQFFTRINLLACQ*CHGCLL
Trigger: CAGGAGGCATCCATGACATCACTGACAAGCAAGAAG...GTTAATTCTTGTAAAGAACTGTACTGTGCTAGTTAGAGAATAATGACAAGAGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp TGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCTGACTGGCAAAGCAGCTaGGATTGGACAGTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: CGLFSFVCYHLGLLSLFSDWQSS*DWTVCC
Trigger: ACAACAAACTGTCCAATCCCAGCTGCTTTGCCAGTC...AGAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR TCA 90 bp CTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCAGAACTGGAAATGTGTaGAAGACATCTAGAGGTAGC +
Preference number: 4 (lower is better)
Translates to: LWLIQFCLLPSRALVIILRTGNV*KTSRGS
Trigger: GCTACCTCTAGATGTCTTTCACACATTTCCAGTTCT...GAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR TCA 90 bp GGCTCTTGTCATTATTCTCTAACTAGCACAGTACAGTTCTTTACAAGAATTAACCCTCAGTCAGGCTGTTaGAGGAAAGGTCCAAGAATT +
Preference number: 4 (lower is better)
Translates to: GSCHYSLTSTVQFFTRINPQSGC*RKGPRI
Trigger: AATTCTTGGACCTTTCCTTCAACAGCCTGACTGAGG...GTTAATTCTTGTAAAGAACTGTACTGTGCTAGTTAGAGAATAATGACAAGAGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR GCA 90 bp CTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCTCAGGATGTACTTCTTaGTTGTCAGTGATGTCATGG +
Preference number: 4 (lower is better)
Translates to: LWLIQFCLLPSRALVIILSGCTS*LSVMSW
Trigger: CCATGACATCACTGACAAGCAAGAAGTACATCCTGA...GAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp TGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCTCGGACAATCTTGTTTTaGTCCAGGCTCAACTTCTTC +
Preference number: 4 (lower is better)
Translates to: CGLFSFVCYHLGLLSLFSRTILF*SRLNFF
Trigger: GAAGAAGTTGAGCCTGGACCAAAACAAGATTGTCCG...AGAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CCA 90 bp TCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCCAGTACGGTATAATTTaGTTGCTCATCAGGTGTCTC +
Preference number: 4 (lower is better)
Translates to: SCGLFSFVCYHLGLLSLFQYGII*LLIRCL
Trigger: GAGACACCTGATGAGCAACCAAATTATACCGTACTG...GAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
3UTR CAA 72 bp ATATTTGACATGTTTATCTTTTCCCCTAAGGAGCCCTaGCAAATCACAGAGAGACGAGAACAAATGACTAGT +
Preference number: 4 (lower is better)
Translates to: IFDMFIFSPKEP*QITERREQMTS
Trigger: ACTAGTCATTTGTTCTCGTCTCTCTGTGATTTGCAAGGGCTCCTTAGGGGAAAAGATAAACATGTCAAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR TCA 90 bp CTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCAGAATTCCAATGTCTTaGAGTCTCCATATTTCACGT +
Preference number: 4 (lower is better)
Translates to: LWLIQFCLLPSRALVIILRIPMS*SLHISR
Trigger: ACGTGAAATATGGAGACTTCAAGACATTGGAATTCT...GAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS CCA 90 bp TGGCAGAACTCGTCCATGAACTCGAGGAAGCGGCCCAACTTGGGCTaGCCGGCGCTCAGCGCACGGCGGGTAGGCGGCCTTGGCGGCGGG +
Preference number: 5 (lower is better)
Translates to: WQNSSMNSRKRPNLG*PALSARRVGGLGGG
Trigger: CCCGCCGCCAAGGCCGCCTACCCGCCGTGCGCTGAGCGCCGGCCAGCCCAAGTTGGGCCGCTTCCTCGAGTTCATGGACGAGTTCTGCCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GCCAGCCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCAGAGAGGTGAGCCCATaGCCTGTGAGGAGCAGCACA +
Preference number: 5 (lower is better)
Translates to: ASHQVQPGRAPRQGPAVLREVSP*PVRSST
Trigger: TGTGCTGCTCCTCACAGGCAATGGGCTCACCTCTCT...GAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGGCTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp GGCCGGCTGTATGGCTCTGGTGGGACACTGCCTCGCTGTGAACGGTaGAGTCGGAACAGATGGGAGGCATCGGCACAAAGGCCCGGTGAG +
Preference number: 5 (lower is better)
Translates to: GRLYGSGGTLPRCER*SRNRWEASAQRPGE
Trigger: CTCACCGGGCCTTTGTGCCGATGCCTCCCATCTGTTCCGACTCCACCGTTCACAGCGAGGCAGTGTCCCACCAGAGCCATACAGCCGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS TCA 90 bp CTCACGAGGCCGGCTGTATGGCTCTGGTGGGACACTGCCTCGCTGTaGACGGTGGAGTCGGAACAGATGGGAGGCATCGGCACAAAGGCC +
Preference number: 5 (lower is better)
Translates to: LTRPAVWLWWDTASL*TVESEQMGGIGTKA
Trigger: GGCCTTTGTGCCGATGCCTCCCATCTGTTCCGACTCCACCGTTCACAGCGAGGCAGTGTCCCACCAGAGCCATACAGCCGGCCTCGTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTGACCGGACGGCATCCTCCTTaGCGATCTTGTTGTAGGCCA +
Preference number: 5 (lower is better)
Translates to: VQPGRAPRQGPAVLPILTGRHPP*RSCCRP
Trigger: TGGCCTACAACAAGATCGCAAAGGAGGATGCCGTCC...GGTCAGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp CCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATATGGACTCCGTACTCTaGGCGTCATCATCTGATGGG +
Preference number: 5 (lower is better)
Translates to: PPGAAWPGSEARSCCAPHMDSVL*ASSSDG
Trigger: CCCATCAGATGATGACGCCAAGAGTACGGAGTCCAT...ATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp AAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGGAGAACGCAGGGTCAGGCTaGACTGTGAGCAGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: KPPLFRAGHSPGRRALGENAGSG*TVSSSS
Trigger: TGAAGAGCTGCTCACAGTCAAGCCTGACCCTGCGTT...CTCCCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GCAAGCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTCCCCCTGCCCGGGAGCCTaGGAGAACTTCATGCCGCTC +
Preference number: 5 (lower is better)
Translates to: ASRTQARKHAFWLLGLGSPCPGA*ENFMPL
Trigger: GAGCGGCATGAAGTTCTCCAAGGCTCCCGGGCAGGG...GGACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGCTTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS TCA 90 bp GCAGCGAGCTGCGTACCAGCTGCCGGTAGCGTGCGCGGAACTCCTTaGGCAGCCTCTTGGCCTCTCGGTATTGCTTCTGGTTCACTAGGC +
Preference number: 5 (lower is better)
Translates to: AASCVPAAGSVRGTP*AASWPLGIASGSLG
Trigger: GCCTAGTGAACCAGAAGCAATACCGAGAGGCCAAGAGGCTGCTCAAGGAGTTCCGCGCACGCTACCGGCAGCTGGTACGCAGCTCGCTGC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 90 bp AGCGAACACAGTCCGCAGCGAGCTGCGTACCAGCTGCCGGTAGCGTaGGCGGAACTCCTTGAGCAGCCTCTTGGCCTCTCGGTATTGCTT +
Preference number: 5 (lower is better)
Translates to: SEHSPQRAAYQLPVA*AELLEQPLGLSVLL
Trigger: AAGCAATACCGAGAGGCCAAGAGGCTGCTCAAGGAGTTCCGCGCACGCTACCGGCAGCTGGTACGCAGCTCGCTGCGGACTGTGTTCGCT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp ACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTTGGCTGGAAAGCAGTaGTTGAGGCAAGGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: TRCSLAGLRGKVLLCSPYLAGKQ*LRQGLP
Trigger: TGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAA...GTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp CCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATGCAAAGCAGCTGGGATaGGACAGTTTGTTGTCATCC +
Preference number: 5 (lower is better)
Translates to: PPGAAWPGSEARSCCAPHAKQLG*DSLLSS
Trigger: GGATGACAACAAACTGTCCAATCCCAGCTGCTTTGC...ATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp TTGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCGTGTCCAGCCTGGGCTaGGAGGAGCGGCAGATGAGC +
Preference number: 5 (lower is better)
Translates to: LLYTTLYCCWASHQVQPGVSSLG*EERQMS
Trigger: GCTCATCTGCCGCTCCTCCAAGCCCAGGCTGGACAC...GCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS TCA 90 bp ACGGTGGAGTCGGAACAGATGGGAGGCATCGGCACAAAGGCCCGGTaGGTTAGGGAAGGGCCTTCTGGGCCCTCATTGGCAAACAGTGCC +
Preference number: 5 (lower is better)
Translates to: TVESEQMGGIGTKAR*VREGPSGPSLANSA
Trigger: GGCACTGTTTGCCAATGAGGGCCCAGAAGGCCCTTCCCTAACTCACCGGGCCTTTGTGCCGATGCCTCCCATCTGTTCCGACTCCACCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 90 bp TGGAAAGTGTCCAGCCTGGGCTTGGAGGAGCGGCAGATGAGCGGCTaGTTCAGCATTCGATGCAGGGCCTGTGCGTTCTTCTGGATGCCC +
Preference number: 5 (lower is better)
Translates to: WKVSSLGLEERQMSG*FSIRCRACAFFWMP
Trigger: GGGCATCCAGAAGAACGCACAGGCCCTGCATCGAATGCTGAAGCAGCCGCTCATCTGCCGCTCCTCCAAGCCCAGGCTGGACACTTTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 90 bp AGCAGCCTCTTGGCCTCTCGGTATTGCTTCTGGTTCACTAGGCGCTaGTGTGCGCGCCGCTGCAACACAGTGCCCAGTGGAGCCTCAGTA +
Preference number: 5 (lower is better)
Translates to: SSLLASRYCFWFTRR*CARRCNTVPSGASV
Trigger: TACTGAGGCTCCACTGGGCACTGTGTTGCAGCGGCGCGCACAGCAGCGCCTAGTGAACCAGAAGCAATACCGAGAGGCCAAGAGGCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTTCCTTTTCCTTTGCCTaGGAGAACTTCATGCCGCTC +
Preference number: 5 (lower is better)
Translates to: EPKPPLFRAGHSPGRRALSFSFA*ENFMPL
Trigger: GAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAAGGA...AAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp AAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTGGGGAGGGATTGGACAGTTTGTaGTCATCCAGCATCAGGGTC +
Preference number: 5 (lower is better)
Translates to: KPPLFRAGHSPGRRALGEGLDSL*SSSIRV
Trigger: GACCCTGATGCTGGATGACAACAAACTGTCCAATCC...CTCCCCAAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp CCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTTCTCTCTGGGTGCTGTaGATGGTCTCCTTTGGTCAT +
Preference number: 5 (lower is better)
Translates to: PGAAWPGSEARSCCAPHTSLWVL*MVSFGH
Trigger: ATGACCAAAGGAGACCATCAACAGCACCCAGAGAGA...AGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCTCCTTGAGCAGCCTCTaGGCCTCTCGGTATTGCTTC +
Preference number: 5 (lower is better)
Translates to: DHGAKWSPSPLCSGLGTVSLSSL*ASRYCF
Trigger: GAAGCAATACCGAGAGGCCAAGAGGCTGCTCAAGGA...GACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 90 bp GGAGCGGCAGATGAGCGGCTGCTTCAGCATTCGATGCAGGGCCTGTaGGTTCTTCTGGATGCCCTTTGGCTCCAAAAACGCAGGGTCAGG +
Preference number: 5 (lower is better)
Translates to: GAADERLLQHSMQGL*VLLDALWLQKRRVR
Trigger: CCTGACCCTGCGTTTTTGGAGCCAAAGGGCATCCAGAAGAACGCACAGGCCCTGCATCGAATGCTGAAGCAGCCGCTCATCTGCCGCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGGGCGCAGAGCCCTTAACCGAAGGAGACTTTaGGCTGGAAAGCAGTTGTTG +
Preference number: 5 (lower is better)
Translates to: EPKPPLFRAGHSPGRRALNRRRL*AGKQLL
Trigger: CAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTT...AAGGGCTCTGCGCCCTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS TCA 90 bp AGGGTTTCTGGAAAGTGTCCAGCCTGGGCTTGGAGGAGCGGCAGATaGGCGGCTGCTTCAGCATTCGATGCAGGGCCTGTGCGTTCTTCT +
Preference number: 5 (lower is better)
Translates to: RVSGKCPAWAWRSGR*AAASAFDAGPVRSS
Trigger: AGAAGAACGCACAGGCCCTGCATCGAATGCTGAAGCAGCCGCTCATCTGCCGCTCCTCCAAGCCCAGGCTGGACACTTTCCAGAAACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 90 bp CTGGGCTTGGAGGAGCGGCAGATGAGCGGCTGCTTCAGCATTCGATaGAGGGCCTGTGCGTTCTTCTGGATGCCCTTTGGCTCCAAAAAC +
Preference number: 5 (lower is better)
Translates to: LGLEERQMSGCFSIR*RACAFFWMPFGSKN
Trigger: GTTTTTGGAGCCAAAGGGCATCCAGAAGAACGCACAGGCCCTGCATCGAATGCTGAAGCAGCCGCTCATCTGCCGCTCCTCCAAGCCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp CTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGCTGGGATTGGACAGTTaGTTGTCATCCAGCATCAGG +
Preference number: 5 (lower is better)
Translates to: LTTERNGAQAPSVQGWAQLGLDS*LSSSIR
Trigger: CCTGATGCTGGATGACAACAAACTGTCCAATCCCAG...CTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCTGGCTGTCTCTGAGGTaGAAAATCCAGGGTAAGAGG +
Preference number: 5 (lower is better)
Translates to: DHGAKWSPSPLCSGLGTVWLSLR*KIQGKR
Trigger: CCTCTTACCCTGGATTTTCAACCTCAGAGACAGCCA...GACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCCAGTGTCTGGTTCCTaGCTTTCAGTGACTTCACAG +
Preference number: 5 (lower is better)
Translates to: DHGAKWSPSPLCSGLGTVPVSGS*LSVTSQ
Trigger: CTGTGAAGTCACTGAAAGCAAGGAACCAGACACTGG...GACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 90 bp GTCAGGAAGATGGACTCCGTACTCTTGGCGTCATCATCTGATGGGTaGTCTGAGCTCACGAGGCCGGCTGTATGGCTCTGGTGGGACACT +
Preference number: 5 (lower is better)
Translates to: VRKMDSVLLASSSDG*SELTRPAVWLWWDT
Trigger: AGTGTCCCACCAGAGCCATACAGCCGGCCTCGTGAGCTCAGAGCACCCATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp ATGGCAGCTCATTCACCTGGGTCAGGAAGATGGACTCCGTACTCTTaGCGTCATCATCTGATGGGTGCTCTGAGCTCACGAGGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: MAAHSPGSGRWTPYS*RHHLMGALSSRGRL
Trigger: CAGCCGGCCTCGTGAGCTCAGAGCACCCATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp TGTGGGCGGTGGAGGATGGCAGCTCATTCACCTGGGTCAGGAAGATaGACTCCGTACTCTTGGCGTCATCATCTGATGGGTGCTCTGAGC +
Preference number: 5 (lower is better)
Translates to: CGRWRMAAHSPGSGR*TPYSWRHHLMGALS
Trigger: GCTCAGAGCACCCATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCCATCCTCCACCGCCCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp CCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACTTTGCCATTGTCCATTTaGTACATTCCAGAAGACACC +
Preference number: 5 (lower is better)
Translates to: PGAAWPGSEARSCCAPHTLPLSI*YIPEDT
Trigger: GGTGTCTTCTGGAATGTACAAAATGGACAATGGCAA...AGTATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp GGCAAGCAGAACACAGGCAAGAAAGCATGCCTTCTGGCTGCTGGGGCTGGGGTCTTGGCTGGAAAGCAGTaGTTGAGGCAAGGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: GKQNTGKKACLLAAGAGVLAGKQ*LRQGLP
Trigger: TGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAA...GACCCCAGCCCCAGCAGCCAGAAGGCATGCTTTCTTGCCTGTGTTCTGCTTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR CAA 90 bp CCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATACAGACGTAAAATGTTaGAAGTCCTTTTCCTTTGCC +
Preference number: 5 (lower is better)
Translates to: PPGAAWPGSEARSCCAPHTDVKC*KSFSFA
Trigger: GGCAAAGGAAAAGGACTTCAAACATTTTACGTCTGT...ATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp CCACCAGGTGCAGCCTGGCCGGGCTCCGAGGCAAGGTCCTGCTGTGCTCCCCATTACGGTATAATTTGGTaGCTCATCAGGTGTCTCAAA +
Preference number: 5 (lower is better)
Translates to: PPGAAWPGSEARSCCAPHYGIIW*LIRCLK
Trigger: TTTGAGACACCTGATGAGCAACCAAATTATACCGTA...ATGGGGAGCACAGCAGGACCTTGCCTCGGAGCCCGGCCAGGCTGCACCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp TTGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCTCCTCCGAGTCCTCTTaGTCTCTCTGGGTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: LLYTTLYCCWASHQVQPGSSESS*SLWVLL
Trigger: CAACAGCACCCAGAGAGACAAAGAGGACTCGGAGGA...GCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp TCATCAGGTGTCTCAAATATCCACATCTGGGGCTGCAGCTCTTTCTaGGGATTTGGTCCCTCTGTGACCCAGTCCCCCGACCCATCACGG +
Preference number: 5 (lower is better)
Translates to: SSGVSNIHIWGCSSF*GFGPSVTQSPDPSR
Trigger: CCGTGATGGGTCGGGGGACTGGGTCACAGAGGGACCAAATCCCCAGAAAGAGCTGCAGCCCCAGATGTGGATATTTGAGACACCTGATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CCA 90 bp AGCAGTGGTGGGATCCCTCGTGTGTGTGCTACCAAAGGGTTGTTATaGAAGACAAGCTCACAGAGGGAGGGGAAGAGAGCTGCTGGCAGG +
Preference number: 5 (lower is better)
Translates to: SSGGIPRVCATKGLL*KTSSQREGKRAAGR
Trigger: CCTGCCAGCAGCTCTCTTCCCCTCCCTCTGTGAGCTTGTCTTCCATAACAACCCTTTGGTAGCACACACACGAGGGATCCCACCACTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp ACTGACCACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACATCCTCAGTCAGGCTGTaGAAGGAAAGGTCCAAGAAT +
Preference number: 5 (lower is better)
Translates to: TDHGAKWSPSPLCSGLGTSSVRL*KERSKN
Trigger: ATTCTTGGACCTTTCCTTCAACAGCCTGACTGAGGA...TGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTGGTCAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp CACGGAGCGAAATGGAGCCCAAGCCCCCTCTGTTCAGGGCTGGGCACAGTCCAGCTCAGGATGTACTTCTaGCTTGTCAGTGATGTCATG +
Preference number: 5 (lower is better)
Translates to: HGAKWSPSPLCSGLGTVQLRMYF*LVSDVM
Trigger: CATGACATCACTGACAAGCAAGAAGTACATCCTGAG...CTGGACTGTGCCCAGCCCTGAACAGAGGGGGCTTGGGCTCCATTTCGCTCCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 90 bp AGGGTTGTTATGGAAGACAAGCTCACAGAGGGAGGGGAAGAGAGCTaGTGGCAGGACGGCATCCTCCTTTGCGATCTTGTTGTAGGCCAG +
Preference number: 5 (lower is better)
Translates to: RVVMEDKLTEGGEES*WQDGILLCDLVVGQ
Trigger: CTGGCCTACAACAAGATCGCAAAGGAGGATGCCGTCCTGCCAGCAGCTCTCTTCCCCTCCCTCTGTGAGCTTGTCTTCCATAACAACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp GTTGTTATGGAAGACAAGCTCACAGAGGGAGGGGAAGAGAGCTGCTaGCAGGACGGCATCCTCCTTTGCGATCTTGTTGTAGGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: VVMEDKLTEGGEESC*QDGILLCDLVVGQA
Trigger: AGCCTGGCCTACAACAAGATCGCAAAGGAGGATGCCGTCCTGCCAGCAGCTCTCTTCCCCTCCCTCTGTGAGCTTGTCTTCCATAACAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp GTCTCCTTTGGTCATTCACTGCCTCCAAATTTTCCCTGTGGGCGGTaGAGGATGGCAGCTCATTCACCTGGGTCAGGAAGATGGACTCCG +
Preference number: 5 (lower is better)
Translates to: VSFGHSLPPNFPCGR*RMAAHSPGSGRWTP
Trigger: CGGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCCATCCTCCACCGCCCACAGGGAAAATTTGGAGGCAGTGAATGACCAAAGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp CTTCAGCATTCGATGCAGGGCCTGTGCGTTCTTCTGGATGCCCTTTaGCTCCAAAAACGCAGGGTCAGGCTTGACTGTGAGCAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: LQHSMQGLCVLLDAL*LQKRRVRLDCEQLF
Trigger: GAAGAGCTGCTCACAGTCAAGCCTGACCCTGCGTTTTTGGAGCCAAAGGGCATCCAGAAGAACGCACAGGCCCTGCATCGAATGCTGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp TTGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCGGAAGTGAGCATACCTaGGCTGTCTCTGAGGTTGAA +
Preference number: 5 (lower is better)
Translates to: LLYTTLYCCWASHQVQPGGSEHT*AVSEVE
Trigger: TTCAACCTCAGAGACAGCCAAGGTATGCTCACTTCC...GCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp TGCTCTACACCACTCTTTATTGCTGCTGGGCCAGCCACCAGGTGCAGCCTGGCCTTGTTGAGGCAAGGCTaGCCATTGTCCATTTTGTAC +
Preference number: 5 (lower is better)
Translates to: CSTPLFIAAGPATRCSLALLRQG*PLSILY
Trigger: GTACAAAATGGACAATGGCAAGCCTTGCCTCAACAA...GGCCAGGCTGCACCTGGTGGCTGGCCCAGCAGCAATAAAGAGTGGTGTAGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp GGTTTTACCAGTTTCTTTCGAACTAAGCGGATGCCCAGGCGATCCTaGAGGAAGCTTTTCAGCAGTGGTGGGATCCCTCGTGTGTGTGCT +
Preference number: 5 (lower is better)
Translates to: GFTSFFRTKRMPRRS*RKLFSSGGIPRVCA
Trigger: AGCACACACACGAGGGATCCCACCACTGCTGAAAAGCTTCCTCCAGGATCGCCTGGGCATCCGCTTAGTTCGAAAGAAACTGGTAAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp TCCAAATTTTCCCTGTGGGCGGTGGAGGATGGCAGCTCATTCACCTaGGTCAGGAAGATGGACTCCGTACTCTTGGCGTCATCATCTGAT +
Preference number: 5 (lower is better)
Translates to: SKFSLWAVEDGSSFT*VRKMDSVLLASSSD
Trigger: ATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCCATCCTCCACCGCCCACAGGGAAAATTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp GTTGATGGTCTCCTTTGGTCATTCACTGCCTCCAAATTTTCCCTGTaGGCGGTGGAGGATGGCAGCTCATTCACCTGGGTCAGGAAGATG +
Preference number: 5 (lower is better)
Translates to: VDGLLWSFTASKFSL*AVEDGSSFTWVRKM
Trigger: CATCTTCCTGACCCAGGTGAATGAGCTGCCATCCTCCACCGCCCACAGGGAAAATTTGGAGGCAGTGAATGACCAAAGGAGACCATCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS-3UTR CAA 90 bp TCCACTCTGGGCTGCTCCCCTTGGGGCAGGCTCTCTGACAGACAAGGACAGAAGTTGCCATTGTCCATTTaGTACATTCCAGAAGACACC +
Preference number: 5 (lower is better)
Translates to: STLGCSPWGRLSDRQGQKLPLSI*YIPEDT
Trigger: GGTGTCTTCTGGAATGTACAAAATGGACAATGGCAA...CTTCTGTCCTTGTCTGTCAGAGAGCCTGCCCCAAGGGGAGCAGCCCAGAGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS TCA 90 bp TGCCTTGGAGAACTTCATGCCGCTCACGTTGATAGTGCAAAGATCTaGTGGCTTCCTGGCAGAGTGGTGCTTCAGCAGAAAAGACCGGTC +
Preference number: 5 (lower is better)
Translates to: CLGELHAAHVDSAKI*WLPGRVVLQQKRPV
Trigger: GACCGGTCTTTTCTGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS TCA 90 bp GGTCTCCAGCGCTGGGAACCTCAGGATGTACTTCTTGCTTGTCAGTaGTGTCATGGATGCCTCCTGTTCTTTGACAGCCATGTTAGGTGG +
Preference number: 5 (lower is better)
Translates to: GLQRWEPQDVLLACQ*CHGCLLFFDSHVRW
Trigger: CCACCTAACATGGCTGTCAAAGAACAGGAGGCATCCATGACATCACTGACAAGCAAGAAGTACATCCTGAGGTTCCCAGCGCTGGAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS TCA 90 bp AGCCTTGGAGAACTTCATGCCGCTCACGTTGATAGTGCAAAGATCTaGTGGCTTCCTGGCAGAGTGGTGCTTCAGCAGAAAAGACCGGTC +
Preference number: 5 (lower is better)
Translates to: SLGELHAAHVDSAKI*WLPGRVVLQQKRPV
Trigger: GACCGGTCTTTTCTGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS CCA 90 bp CCGCTCACGTTGATAGTGCAAAGATCTGATGGCTTCCTGGCAGAGTaGTGCTTCAGCAGAAAAGACCGGTCCAAAATGTGTCCAAGAACG +
Preference number: 5 (lower is better)
Translates to: PLTLIVQRSDGFLAE*CFSRKDRSKMCPRT
Trigger: CGTTCTTGGACACATTTTGGACCGGTCTTTTCTGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS TCA 90 bp CAGAGAATGCTTCGGCACCTTGGGGATGTAGGTCTTCACCTTCCGTaGCTCCTTCCGAGGCATCAACATATGGTGTTTAGGTTTTACCAG +
Preference number: 5 (lower is better)
Translates to: QRMLRHLGDVGLHLP*LLPRHQHMVFRFYQ
Trigger: CTGGTAAAACCTAAACACCATATGTTGATGCCTCGGAAGGAGTCACGGAAGGTGAAGACCTACATCCCCAAGGTGCCGAAGCATTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 90 bp CTCTGTGCGGTCAACGTCCTTCTTCATGGGCAGTACGGTATAATTTaGTTGCTCATCAGGTGTCTCAAATATCCACATCTGGGGCTGCAG +
Preference number: 5 (lower is better)
Translates to: LCAVNVLLHGQYGII*LLIRCLKYPHLGLQ
Trigger: CTGCAGCCCCAGATGTGGATATTTGAGACACCTGATGAGCAACCAAATTATACCGTACTGCCCATGAAGAAGGACGTTGACCGCACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS GCA 90 bp CTCACGTTGATAGTGCAAAGATCTGATGGCTTCCTGGCAGAGTGGTaGTTCAGCAGAAAAGACCGGTCCAAAATGTGTCCAAGAACGTCT +
Preference number: 5 (lower is better)
Translates to: LTLIVQRSDGFLAEW*FSRKDRSKMCPRTS
Trigger: AGACGTTCTTGGACACATTTTGGACCGGTCTTTTCTGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS TCA 90 bp CTTCTTCCGGCAACCGAAGGAGACTTTTGGCTGGAAAGCAGTTGTTaGGGCAAGGCTTGCCATTGTCCATTTTGTACATTCCAGAAGACA +
Preference number: 5 (lower is better)
Translates to: LLPATEGDFWLESSC*GKACHCPFCTFQKT
Trigger: TGTCTTCTGGAATGTACAAAATGGACAATGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTTGCCGGAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS TCA 90 bp ATTTTCTTCAACCCAGTATCGAAAGAAACCTTCTTCTGGCTTTCCTaGCCTTCGGTGGATGCCTTAGCTGCACCTTTCTTCATGCTGCCT +
Preference number: 5 (lower is better)
Translates to: IFFNPVSKETFFWLS*PSVDALAAPFFMLP
Trigger: AGGCAGCATGAAGAAAGGTGCAGCTAAGGCATCCACCGAAGGTCAGGAAAGCCAGAAGAAGGTTTCTTTCGATACTGGGTTGAAGAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS-3UTR CAA 90 bp CTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCAGAGAGGTGAGCCCATaGCCTGTGAGGAGCAGCACA +
Preference number: 5 (lower is better)
Translates to: LWLIQFCLLPSRALVIILREVSP*PVRSST
Trigger: TGTGCTGCTCCTCACAGGCAATGGGCTCACCTCTCT...GAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp GTCTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATCCTTTTCCTTTGCCTaGGAGAACTTCATGCCGCTC +
Preference number: 5 (lower is better)
Translates to: VSCGLFSFVCYHLGLLSLSFSFA*ENFMPL
Trigger: GAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAAGGA...TAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp GTCTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTACTGGGATTGGACAGTTaGTTGTCATCCAGCATCAGG +
Preference number: 5 (lower is better)
Translates to: VSCGLFSFVCYHLGLLSLLGLDS*LSSSIR
Trigger: CCTGATGCTGGATGACAACAAACTGTCCAATCCCAG...TAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp GTCTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTAGCAAAGCAGCTGGGATaGGACAGTTTGTTGTCATCC +
Preference number: 5 (lower is better)
Translates to: VSCGLFSFVCYHLGLLSLAKQLG*DSLLSS
Trigger: GGATGACAACAAACTGTCCAATCCCAGCTGCTTTGC...TAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp CCTGGCTGCTGTATCTGGTTGAGCCACATTGAGTTTTATTACACATCAAAGTATAACCGAAGGAGACTTTaGGCTGGAAAGCAGTTGTTG +
Preference number: 5 (lower is better)
Translates to: PGCCIWLSHIEFYYTSKYNRRRL*AGKQLL
Trigger: CAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTT...ATACTTTGATGTGTAATAAAACTCAATGTGGCTCAACCAGATACAGCAGCCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS-3UTR CAA 90 bp CTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTGGATTGGACAGTTTGTaGTCATCCAGCATCAGGGTC +
Preference number: 5 (lower is better)
Translates to: LLWLIQFCLLPSRALVIIGLDSL*SSSIRV
Trigger: GACCCTGATGCTGGATGACAACAAACTGTCCAATCC...AATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp CTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCCTCCTACCTCTGAGGTaGAAAATCCAGGGTAAGAGG +
Preference number: 5 (lower is better)
Translates to: LWLIQFCLLPSRALVIILLLPLR*KIQGKR
Trigger: CCTCTTACCCTGGATTTTCAACCTCAGAGGTAGGAG...GAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp GGCTCTTGTCATTATTCTCTAACTAGCACAGTACAGTTCTTTACAAGAATTAACTTGGCTGGAAAGCAGTaGTTGAGGCAAGGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: GSCHYSLTSTVQFFTRINLAGKQ*LRQGLP
Trigger: TGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAA...GTTAATTCTTGTAAAGAACTGTACTGTGCTAGTTAGAGAATAATGACAAGAGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp TCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCAACCGAAGGAGACTTTaGGCTGGAAAGCAGTTGTTG +
Preference number: 5 (lower is better)
Translates to: SCGLFSFVCYHLGLLSLFNRRRL*AGKQLL
Trigger: CAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTT...GAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp GTCTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTACTCAGGATGTACTTCTaGCTTGTCAGTGATGTCATG +
Preference number: 5 (lower is better)
Translates to: VSCGLFSFVCYHLGLLSLLRMYF*LVSDVM
Trigger: CATGACATCACTGACAAGCAAGAAGTACATCCTGAG...TAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp CTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTTTGTTGAGGCAAGGCTaGCCATTGTCCATTTTGTAC +
Preference number: 5 (lower is better)
Translates to: LLWLIQFCLLPSRALVIILLRQG*PLSILY
Trigger: GTACAAAATGGACAATGGCAAGCCTTGCCTCAACAA...AATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp TGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCTTCCTCAGTCAGGCTGTaGAAGGAAAGGTCCAAGAAT +
Preference number: 5 (lower is better)
Translates to: CGLFSFVCYHLGLLSLFSSSVRL*KERSKN
Trigger: ATTCTTGGACCTTTCCTTCAACAGCCTGACTGAGGA...AGAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp CTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCTCTTGCCATTGTCCATTTaGTACATTCCAGAAGACACC +
Preference number: 5 (lower is better)
Translates to: LWLIQFCLLPSRALVIILLPLSI*YIPEDT
Trigger: GGTGTCTTCTGGAATGTACAAAATGGACAATGGCAA...GAGAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp TCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTCACAGACGTAAAATGTTaGAAGTCCTTTTCCTTTGCC +
Preference number: 5 (lower is better)
Translates to: SCGLFSFVCYHLGLLSLFTDVKC*KSFSFA
Trigger: GGCAAAGGAAAAGGACTTCAAACATTTTACGTCTGT...GAATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS-3UTR CAA 90 bp CTCCTGTGGCTTATTCAGTTTTGTTTGTTACCATCTAGGGCTCTTGTCATTATTTACGGTATAATTTGGTaGCTCATCAGGTGTCTCAAA +
Preference number: 5 (lower is better)
Translates to: LLWLIQFCLLPSRALVIIYGIIW*LIRCLK
Trigger: TTTGAGACACCTGATGAGCAACCAAATTATACCGTA...AATAATGACAAGAGCCCTAGATGGTAACAAACAAAACTGAATAAGCCACAGGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207855.2
CDS CCA 72 bp CTGGCCGGCGCTCAGCGCACGGCGGGTAGGCGGCCTTaGCGGCGGGCTGGCAGCGAACACAGTCCGCAGCGA +
Preference number: 6 (lower is better)
Translates to: LAGAQRTAGRRP*RRAGSEHSPQR
Trigger: TCGCTGCGGACTGTGTTCGCTGCCAGCCCGCCGCCAAGGCCGCCTACCCGCCGTGCGCTGAGCGCCGGCCAG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 72 bp GCGGCGGGCTGGCAGCGAACACAGTCCGCAGCGAGCTaGGTACCAGCTGCCGGTAGCGTGCGCGGAACTCCT +
Preference number: 6 (lower is better)
Translates to: AAGWQRTQSAAS*VPAAGSVRGTP
Trigger: AGGAGTTCCGCGCACGCTACCGGCAGCTGGTACGCAGCTCGCTGCGGACTGTGTTCGCTGCCAGCCCGCCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 90 bp GGCTCCTGGCAGAACTCGTCCATGAACTCGAGGAAGCGGCCCAACTaGGGCTGGCCGGCGCTCAGCGCACGGCGGGTAGGCGGCCTTGGC +
Preference number: 6 (lower is better)
Translates to: GSWQNSSMNSRKRPN*GWPALSARRVGGLG
Trigger: GCCAAGGCCGCCTACCCGCCGTGCGCTGAGCGCCGGCCAGCCCAAGTTGGGCCGCTTCCTCGAGTTCATGGACGAGTTCTGCCAGGAGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp TCGTCCATGAACTCGAGGAAGCGGCCCAACTTGGGCTaGCCGGCGCTCAGCGCACGGCGGGTAGGCGGCCTT +
Preference number: 6 (lower is better)
Translates to: SSMNSRKRPNLG*PALSARRVGGL
Trigger: AAGGCCGCCTACCCGCCGTGCGCTGAGCGCCGGCCAGCCCAAGTTGGGCCGCTTCCTCGAGTTCATGGACGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp CAGAACTCGTCCATGAACTCGAGGAAGCGGCCCAACTaGGGCTGGCCGGCGCTCAGCGCACGGCGGGTAGGC +
Preference number: 6 (lower is better)
Translates to: QNSSMNSRKRPN*GWPALSARRVG
Trigger: GCCTACCCGCCGTGCGCTGAGCGCCGGCCAGCCCAAGTTGGGCCGCTTCCTCGAGTTCATGGACGAGTTCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 72 bp AGTCCGCAGCGAGCTGCGTACCAGCTGCCGGTAGCGTaGGCGGAACTCCTTGAGCAGCCTCTTGGCCTCTCG +
Preference number: 6 (lower is better)
Translates to: SPQRAAYQLPVA*AELLEQPLGLS
Trigger: CGAGAGGCCAAGAGGCTGCTCAAGGAGTTCCGCGCACGCTACCGGCAGCTGGTACGCAGCTCGCTGCGGACT
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS TCA 72 bp CCGGCTGTATGGCTCTGGTGGGACACTGCCTCGCTGTaGACGGTGGAGTCGGAACAGATGGGAGGCATCGGC +
Preference number: 6 (lower is better)
Translates to: PAVWLWWDTASL*TVESEQMGGIG
Trigger: GCCGATGCCTCCCATCTGTTCCGACTCCACCGTTCACAGCGAGGCAGTGTCCCACCAGAGCCATACAGCCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS TCA 72 bp GGAAAGTGTCCAGCCTGGGCTTGGAGGAGCGGCAGATaGGCGGCTGCTTCAGCATTCGATGCAGGGCCTGTG +
Preference number: 6 (lower is better)
Translates to: GKCPAWAWRSGR*AAASAFDAGPV
Trigger: CACAGGCCCTGCATCGAATGCTGAAGCAGCCGCTCATCTGCCGCTCCTCCAAGCCCAGGCTGGACACTTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 72 bp CGGAACTCCTTGAGCAGCCTCTTGGCCTCTCGGTATTaGTTCTGGTTCACTAGGCGCTGCTGTGCGCGCCGC +
Preference number: 6 (lower is better)
Translates to: RNSLSSLLASRY*FWFTRRCCARR
Trigger: GCGGCGCGCACAGCAGCGCCTAGTGAACCAGAAGCAATACCGAGAGGCCAAGAGGCTGCTCAAGGAGTTCCG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS TCA 72 bp TGCGTACCAGCTGCCGGTAGCGTGCGCGGAACTCCTTaGGCAGCCTCTTGGCCTCTCGGTATTGCTTCTGGT +
Preference number: 6 (lower is better)
Translates to: CVPAAGSVRGTP*AASWPLGIASG
Trigger: ACCAGAAGCAATACCGAGAGGCCAAGAGGCTGCTCAAGGAGTTCCGCGCACGCTACCGGCAGCTGGTACGCA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 72 bp GAGGAGCGGCAGATGAGCGGCTGCTTCAGCATTCGATaGAGGGCCTGTGCGTTCTTCTGGATGCCCTTTGGC +
Preference number: 6 (lower is better)
Translates to: EERQMSGCFSIR*RACAFFWMPFG
Trigger: GCCAAAGGGCATCCAGAAGAACGCACAGGCCCTGCATCGAATGCTGAAGCAGCCGCTCATCTGCCGCTCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp TATGGCTCTGGTGGGACACTGCCTCGCTGTGAACGGTaGAGTCGGAACAGATGGGAGGCATCGGCACAAAGG +
Preference number: 6 (lower is better)
Translates to: YGSGGTLPRCER*SRNRWEASAQR
Trigger: CCTTTGTGCCGATGCCTCCCATCTGTTCCGACTCCACCGTTCACAGCGAGGCAGTGTCCCACCAGAGCCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp TCCCTGTGGGCGGTGGAGGATGGCAGCTCATTCACCTaGGTCAGGAAGATGGACTCCGTACTCTTGGCGTCA +
Preference number: 6 (lower is better)
Translates to: SLWAVEDGSSFT*VRKMDSVLLAS
Trigger: TGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCCATCCTCCACCGCCCACAGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 90 bp CTGAGCCCAGCCAGACTGGCAAAGCAGCTGGGATTGGACAGTTTGTaGTCATCCAGCATCAGGGTCTCCAGCGCTGGGAACCTCAGGATG +
Preference number: 6 (lower is better)
Translates to: LSPARLAKQLGLDSL*SSSIRVSSAGNLRM
Trigger: CATCCTGAGGTTCCCAGCGCTGGAGACCCTGATGCTGGATGACAACAAACTGTCCAATCCCAGCTGCTTTGCCAGTCTGGCTGGGCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 90 bp GATGGCAGCTCATTCACCTGGGTCAGGAAGATGGACTCCGTACTCTaGGCGTCATCATCTGATGGGTGCTCTGAGCTCACGAGGCCGGCT +
Preference number: 6 (lower is better)
Translates to: DGSSFTWVRKMDSVL*ASSSDGCSELTRPA
Trigger: AGCCGGCCTCGTGAGCTCAGAGCACCCATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 72 bp ATGGACTCCGTACTCTTGGCGTCATCATCTGATGGGTaGTCTGAGCTCACGAGGCCGGCTGTATGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: MDSVLLASSSDG*SELTRPAVWLW
Trigger: CCAGAGCCATACAGCCGGCCTCGTGAGCTCAGAGCACCCATCAGATGATGACGCCAAGAGTACGGAGTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp GAGCCCATTGCCTGTGAGGAGCAGCACACGGAGATGTaGCAGAATCCCCAGATCACAGATGGCCTCCTCAGT +
Preference number: 6 (lower is better)
Translates to: EPIACEEQHTEM*QNPQITDGLLS
Trigger: ACTGAGGAGGCCATCTGTGATCTGGGGATTCTGCCACATCTCCGTGTGCTGCTCCTCACAGGCAATGGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CCA 72 bp GGGGTAGAATCGGTATCCTCCCGGCCCTCTTCTCCTTaGGAACGTAGGGTTTCTGGAAAGTGTCCAGCCTGG +
Preference number: 6 (lower is better)
Translates to: GVESVSSRPSSP*ERRVSGKCPAW
Trigger: CCAGGCTGGACACTTTCCAGAAACCCTACGTTCCCAAGGAGAAGAGGGCCGGGAGGATACCGATTCTACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp CCAGCCAGACTGGCAAAGCAGCTGGGATTGGACAGTTaGTTGTCATCCAGCATCAGGGTCTCCAGCGCTGGG +
Preference number: 6 (lower is better)
Translates to: PARLAKQLGLDS*LSSSIRVSSAG
Trigger: CCCAGCGCTGGAGACCCTGATGCTGGATGACAACAAACTGTCCAATCCCAGCTGCTTTGCCAGTCTGGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS GCA 72 bp GATGAGCGGCTGCTTCAGCATTCGATGCAGGGCCTGTaGGTTCTTCTGGATGCCCTTTGGCTCCAAAAACGC +
Preference number: 6 (lower is better)
Translates to: DERLLQHSMQGL*VLLDALWLQKR
Trigger: GCGTTTTTGGAGCCAAAGGGCATCCAGAAGAACGCACAGGCCCTGCATCGAATGCTGAAGCAGCCGCTCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp GTCTCAAATATCCACATCTGGGGCTGCAGCTCTTTCTaGGGATTTGGTCCCTCTGTGACCCAGTCCCCCGAC +
Preference number: 6 (lower is better)
Translates to: VSNIHIWGCSSF*GFGPSVTQSPD
Trigger: GTCGGGGGACTGGGTCACAGAGGGACCAAATCCCCAGAAAGAGCTGCAGCCCCAGATGTGGATATTTGAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CCA 72 bp GCCCAGGCGATCCTGGAGGAAGCTTTTCAGCAGTGGTaGGATCCCTCGTGTGTGTGCTACCAAAGGGTTGTT +
Preference number: 6 (lower is better)
Translates to: AQAILEEAFQQW*DPSCVCYQRVV
Trigger: AACAACCCTTTGGTAGCACACACACGAGGGATCCCACCACTGCTGAAAAGCTTCCTCCAGGATCGCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp GATGCCCAGGCGATCCTGGAGGAAGCTTTTCAGCAGTaGTGGGATCCCTCGTGTGTGTGCTACCAAAGGGTT +
Preference number: 6 (lower is better)
Translates to: DAQAILEEAFQQ*WDPSCVCYQRV
Trigger: AACCCTTTGGTAGCACACACACGAGGGATCCCACCACTGCTGAAAAGCTTCCTCCAGGATCGCCTGGGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp TCGATGCAGGGCCTGTGCGTTCTTCTGGATGCCCTTTaGCTCCAAAAACGCAGGGTCAGGCTTGACTGTGAG +
Preference number: 6 (lower is better)
Translates to: SMQGLCVLLDAL*LQKRRVRLDCE
Trigger: CTCACAGTCAAGCCTGACCCTGCGTTTTTGGAGCCAAAGGGCATCCAGAAGAACGCACAGGCCCTGCATCGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp TGTCCCCGGCCTTCTTCCGGCAACCGAAGGAGACTTTaGGCTGGAAAGCAGTTGTTGAGGCAAGGCTTGCCA +
Preference number: 6 (lower is better)
Translates to: CPRPSSGNRRRL*AGKQLLRQGLP
Trigger: TGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTTGCCGGAAGAAGGCCGGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CAA 72 bp TTGACAGCCATGTTAGGTGGCAGAGAGGTGAGCCCATaGCCTGTGAGGAGCAGCACACGGAGATGTGGCAGA +
Preference number: 6 (lower is better)
Translates to: LTAMLGGREVSP*PVRSSTRRCGR
Trigger: TCTGCCACATCTCCGTGTGCTGCTCCTCACAGGCAATGGGCTCACCTCTCTGCCACCTAACATGGCTGTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 72 bp GCCAGACTGGCAAAGCAGCTGGGATTGGACAGTTTGTaGTCATCCAGCATCAGGGTCTCCAGCGCTGGGAAC +
Preference number: 6 (lower is better)
Translates to: ARLAKQLGLDSL*SSSIRVSSAGN
Trigger: GTTCCCAGCGCTGGAGACCCTGATGCTGGATGACAACAAACTGTCCAATCCCAGCTGCTTTGCCAGTCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS GCA 72 bp CAGAAAGCATGCCAGAGAAACACAGGATTAGTTCCCTaGCCGGGAGCCTTGGAGAACTTCATGCCGCTCACG +
Preference number: 6 (lower is better)
Translates to: QKACQRNTGLVP*PGALENFMPLT
Trigger: CGTGAGCGGCATGAAGTTCTCCAAGGCTCCCGGGCAGGGAACTAATCCTGTGTTTCTCTGGCATGCTTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS CCA 72 bp CCGGCCTTCTTCCGGCAACCGAAGGAGACTTTTGGCTaGAAAGCAGTTGTTGAGGCAAGGCTTGCCATTGTC +
Preference number: 6 (lower is better)
Translates to: PAFFRQPKETFG*KAVVEARLAIV
Trigger: GACAATGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTTGCCGGAAGAAGGCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CCA 72 bp CATGGATGCCTCCTGTTCTTTGACAGCCATGTTAGGTaGCAGAGAGGTGAGCCCATTGCCTGTGAGGAGCAG +
Preference number: 6 (lower is better)
Translates to: HGCLLFFDSHVR*QRGEPIACEEQ
Trigger: CTGCTCCTCACAGGCAATGGGCTCACCTCTCTGCCACCTAACATGGCTGTCAAAGAACAGGAGGCATCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CCA 72 bp CTCCTTTGGTCATTCACTGCCTCCAAATTTTCCCTGTaGGCGGTGGAGGATGGCAGCTCATTCACCTGGGTC +
Preference number: 6 (lower is better)
Translates to: LLWSFTASKFSL*AVEDGSSFTWV
Trigger: GACCCAGGTGAATGAGCTGCCATCCTCCACCGCCCACAGGGAAAATTTGGAGGCAGTGAATGACCAAAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp TGCCCGGGAGCCTTGGAGAACTTCATGCCGCTCACGTaGATAGTGCAAAGATCTGATGGCTTCCTGGCAGAG +
Preference number: 6 (lower is better)
Translates to: CPGALENFMPLT*IVQRSDGFLAE
Trigger: CTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCTCCCGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS CAA 90 bp TTAGTTCCCTGCCCGGGAGCCTTGGAGAACTTCATGCCGCTCACGTaGATAGTGCAAAGATCTGATGGCTTCCTGGCAGAGTGGTGCTTC +
Preference number: 6 (lower is better)
Translates to: LVPCPGALENFMPLT*IVQRSDGFLAEWCF
Trigger: GAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCTCCCGGGCAGGGAACTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS TCA 72 bp AGACTTGATGGAGGACTGTCTGTGATCATGTTGAGGTaGTGGGGGACCAGAGAATGCTTCGGCACCTTGGGG +
Preference number: 6 (lower is better)
Translates to: RLDGGLSVIMLR*WGTRECFGTLG
Trigger: CCCCAAGGTGCCGAAGCATTCTCTGGTCCCCCATCACCTCAACATGATCACAGACAGTCCTCCATCAAGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp GGGATCCCTCGTGTGTGTGCTACCAAAGGGTTGTTATaGAAGACAAGCTCACAGAGGGAGGGGAAGAGAGCT +
Preference number: 6 (lower is better)
Translates to: GIPRVCATKGLL*KTSSQREGKRA
Trigger: AGCTCTCTTCCCCTCCCTCTGTGAGCTTGTCTTCCATAACAACCCTTTGGTAGCACACACACGAGGGATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp CATTCACCTGGGTCAGGAAGATGGACTCCGTACTCTTaGCGTCATCATCTGATGGGTGCTCTGAGCTCACGA +
Preference number: 6 (lower is better)
Translates to: HSPGSGRWTPYS*RHHLMGALSSR
Trigger: TCGTGAGCTCAGAGCACCCATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CCA 72 bp TGGAGGATGGCAGCTCATTCACCTGGGTCAGGAAGATaGACTCCGTACTCTTGGCGTCATCATCTGATGGGT +
Preference number: 6 (lower is better)
Translates to: WRMAAHSPGSGR*TPYSWRHHLMG
Trigger: ACCCATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATGAGCTGCCATCCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp TCATTCACCTGGGTCAGGAAGATGGACTCCGTACTCTaGGCGTCATCATCTGATGGGTGCTCTGAGCTCACG +
Preference number: 6 (lower is better)
Translates to: SFTWVRKMDSVL*ASSSDGCSELT
Trigger: CGTGAGCTCAGAGCACCCATCAGATGATGACGCCAAGAGTACGGAGTCCATCTTCCTGACCCAGGTGAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 90 bp ACTATCCAGTGTCCCCGGCCTTCTTCCGGCAACCGAAGGAGACTTTaGGCTGGAAAGCAGTTGTTGAGGCAAGGCTTGCCATTGTCCATT +
Preference number: 6 (lower is better)
Translates to: TIQCPRPSSGNRRRL*AGKQLLRQGLPLSI
Trigger: AATGGACAATGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTTGCCGGAAGAAGGCCGGGGACACTGGATAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CAA 90 bp TCCAGCATCAGGGTCTCCAGCGCTGGGAACCTCAGGATGTACTTCTaGCTTGTCAGTGATGTCATGGATGCCTCCTGTTCTTTGACAGCC +
Preference number: 6 (lower is better)
Translates to: SSIRVSSAGNLRMYF*LVSDVMDASCSLTA
Trigger: GGCTGTCAAAGAACAGGAGGCATCCATGACATCACTGACAAGCAAGAAGTACATCCTGAGGTTCCCAGCGCTGGAGACCCTGATGCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 90 bp CTTTTCAGCAGTGGTGGGATCCCTCGTGTGTGTGCTACCAAAGGGTaGTTATGGAAGACAAGCTCACAGAGGGAGGGGAAGAGAGCTGCT +
Preference number: 6 (lower is better)
Translates to: LFSSGGIPRVCATKG*LWKTSSQREGKRAA
Trigger: AGCAGCTCTCTTCCCCTCCCTCTGTGAGCTTGTCTTCCATAACAACCCTTTGGTAGCACACACACGAGGGATCCCACCACTGCTGAAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS TCA 72 bp GTCTTCAGTGGAGTGCTCGGGCTCCGGCATAAGACTTaGTGGAGGACTGTCTGTGATCATGTTGAGGTGATG +
Preference number: 6 (lower is better)
Translates to: VFSGVLGLRHKT*WRTVCDHVEVM
Trigger: CATCACCTCAACATGATCACAGACAGTCCTCCATCAAGTCTTATGCCGGAGCCCGAGCACTCCACTGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS GCA 72 bp CTTCTGGCTTTCCTGACCTTCGGTGGATGCCTTAGCTaGACCTTTCTTCATGCTGCCTTTCCGGACCACTAT +
Preference number: 6 (lower is better)
Translates to: LLAFLTFGGCLS*TFLHAAFPDHY
Trigger: ATAGTGGTCCGGAAAGGCAGCATGAAGAAAGGTGCAGCTAAGGCATCCACCGAAGGTCAGGAAAGCCAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS GCA 72 bp GGGTCTCCAGCGCTGGGAACCTCAGGATGTACTTCTTaGTTGTCAGTGATGTCATGGATGCCTCCTGTTCTT +
Preference number: 6 (lower is better)
Translates to: GSPALGTSGCTS*LSVMSWMPPVL
Trigger: AAGAACAGGAGGCATCCATGACATCACTGACAAGCAAGAAGTACATCCTGAGGTTCCCAGCGCTGGAGACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CCA 72 bp GATCTTGTTGTAGGCCAGGCTAAGATATCTCAGCTCTaGGAAAGGCGGGGCCAGTGTCTGGTTCCTTGCTTT +
Preference number: 6 (lower is better)
Translates to: DLVVGQAKISQL*ERRGQCLVPCF
Trigger: AAAGCAAGGAACCAGACACTGGCCCCGCCTTTCCCAGAGCTGAGATATCTTAGCCTGGCCTACAACAAGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp AGGGTCTCCAGCGCTGGGAACCTCAGGATGTACTTCTaGCTTGTCAGTGATGTCATGGATGCCTCCTGTTCT +
Preference number: 6 (lower is better)
Translates to: RVSSAGNLRMYF*LVSDVMDASCS
Trigger: AGAACAGGAGGCATCCATGACATCACTGACAAGCAAGAAGTACATCCTGAGGTTCCCAGCGCTGGAGACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS GCA 72 bp AGAAACCTTCTTCTGGCTTTCCTGACCTTCGGTGGATaGCTTAGCTGCACCTTTCTTCATGCTGCCTTTCCG +
Preference number: 6 (lower is better)
Translates to: RNLLLAFLTFGG*LSCTFLHAAFP
Trigger: CGGAAAGGCAGCATGAAGAAAGGTGCAGCTAAGGCATCCACCGAAGGTCAGGAAAGCCAGAAGAAGGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CCA 72 bp AGATATCTCAGCTCTGGGAAAGGCGGGGCCAGTGTCTaGTTCCTTGCTTTCAGTGACTTCACAGGAAGAATC +
Preference number: 6 (lower is better)
Translates to: RYLSSGKGGASV*FLAFSDFTGRI
Trigger: GATTCTTCCTGTGAAGTCACTGAAAGCAAGGAACCAGACACTGGCCCCGCCTTTCCCAGAGCTGAGATATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp TTGCTTGTCAGTGATGTCATGGATGCCTCCTGTTCTTaGACAGCCATGTTAGGTGGCAGAGAGGTGAGCCCA +
Preference number: 6 (lower is better)
Translates to: LLVSDVMDASCS*TAMLGGREVSP
Trigger: TGGGCTCACCTCTCTGCCACCTAACATGGCTGTCAAAGAACAGGAGGCATCCATGACATCACTGACAAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 72 bp GCTTCCTCCGAGTCCTCTTTGTCTCTCTGGGTGCTGTaGATGGTCTCCTTTGGTCATTCACTGCCTCCAAAT +
Preference number: 6 (lower is better)
Translates to: ASSESSLSLWVL*MVSFGHSLPPN
Trigger: ATTTGGAGGCAGTGAATGACCAAAGGAGACCATCAACAGCACCCAGAGAGACAAAGAGGACTCGGAGGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 90 bp CGGCCTTCTTCCGGCAACCGAAGGAGACTTTTGGCTGGAAAGCAGTaGTTGAGGCAAGGCTTGCCATTGTCCATTTTGTACATTCCAGAA +
Preference number: 6 (lower is better)
Translates to: RPSSGNRRRLLAGKQ*LRQGLPLSILYIPE
Trigger: TTCTGGAATGTACAAAATGGACAATGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTTGCCGGAAGAAGGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CAA 90 bp TGTGCGGTCAACGTCCTTCTTCATGGGCAGTACGGTATAATTTGGTaGCTCATCAGGTGTCTCAAATATCCACATCTGGGGCTGCAGCTC +
Preference number: 6 (lower is better)
Translates to: CAVNVLLHGQYGIIW*LIRCLKYPHLGLQL
Trigger: GAGCTGCAGCCCCAGATGTGGATATTTGAGACACCTGATGAGCAACCAAATTATACCGTACTGCCCATGAAGAAGGACGTTGACCGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 90 bp CCTCTGTGCGGTCAACGTCCTTCTTCATGGGCAGTACGGTATAATTaGGTTGCTCATCAGGTGTCTCAAATATCCACATCTGGGGCTGCA +
Preference number: 6 (lower is better)
Translates to: PLCGQRPSSWAVRYN*VAHQVSQISTSGAA
Trigger: TGCAGCCCCAGATGTGGATATTTGAGACACCTGATGAGCAACCAAATTATACCGTACTGCCCATGAAGAAGGACGTTGACCGCACAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 90 bp AAAGCATGCCAGAGAAACACAGGATTAGTTCCCTGCCCGGGAGCCTaGGAGAACTTCATGCCGCTCACGTTGATAGTGCAAAGATCTGAT +
Preference number: 6 (lower is better)
Translates to: KACQRNTGLVPCPGA*ENFMPLTLIVQRSD
Trigger: ATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCTCCCGGGCAGGGAACTAATCCTGTGTTTCTCTGGCATGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208354.2
CDS TCA 72 bp GAACTTCATGCCGCTCACGTTGATAGTGCAAAGATCTaGTGGCTTCCTGGCAGAGTGGTGCTTCAGCAGAAA +
Preference number: 6 (lower is better)
Translates to: ELHAAHVDSAKI*WLPGRVVLQQK
Trigger: TTTCTGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS TCA 72 bp CGCTGGGAACCTCAGGATGTACTTCTTGCTTGTCAGTaGTGTCATGGATGCCTCCTGTTCTTTGACAGCCAT +
Preference number: 6 (lower is better)
Translates to: RWEPQDVLLACQ*CHGCLLFFDSH
Trigger: ATGGCTGTCAAAGAACAGGAGGCATCCATGACATCACTGACAAGCAAGAAGTACATCCTGAGGTTCCCAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CCA 72 bp TTTGGTTGCTCATCAGGTGTCTCAAATATCCACATCTaGGGCTGCAGCTCTTTCTGGGGATTTGGTCCCTCT +
Preference number: 6 (lower is better)
Translates to: FGCSSGVSNIHI*GCSSFWGFGPS
Trigger: AGAGGGACCAAATCCCCAGAAAGAGCTGCAGCCCCAGATGTGGATATTTGAGACACCTGATGAGCAACCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 72 bp TCCGGCAACCGAAGGAGACTTTTGGCTGGAAAGCAGTaGTTGAGGCAAGGCTTGCCATTGTCCATTTTGTAC +
Preference number: 6 (lower is better)
Translates to: SGNRRRLLAGKQ*LRQGLPLSILY
Trigger: GTACAAAATGGACAATGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTTGCCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CAA 90 bp TTGAAGTCCTTTTCCTTTGCCTTGGAGAACTTCATGCCGCTCACGTaGATAGTGCAAAGATCTGATGGCTTCCTGGCAGAGTGGTGCTTC +
Preference number: 6 (lower is better)
Translates to: LKSFSFALENFMPLT*IVQRSDGFLAEWCF
Trigger: GAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAAGGACTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS TCA 72 bp AACCCAGTATCGAAAGAAACCTTCTTCTGGCTTTCCTaGCCTTCGGTGGATGCCTTAGCTGCACCTTTCTTC +
Preference number: 6 (lower is better)
Translates to: NPVSKETFFWLS*PSVDALAAPFF
Trigger: GAAGAAAGGTGCAGCTAAGGCATCCACCGAAGGTCAGGAAAGCCAGAAGAAGGTTTCTTTCGATACTGGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS GCA 72 bp ATAGTGCAAAGATCTGATGGCTTCCTGGCAGAGTGGTaGTTCAGCAGAAAAGACCGGTCCAAAATGTGTCCA +
Preference number: 6 (lower is better)
Translates to: IVQRSDGFLAEW*FSRKDRSKMCP
Trigger: TGGACACATTTTGGACCGGTCTTTTCTGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CCA 72 bp ATCTGTTGTAAGTACGGGATCCGGACAATCTTGTTTTaGTCCAGGCTCAACTTCTTCAGTCTCCTGAGCCCA +
Preference number: 6 (lower is better)
Translates to: ICCKYGIRTILF*SRLNFFSLLSP
Trigger: TGGGCTCAGGAGACTGAAGAAGTTGAGCCTGGACCAAAACAAGATTGTCCGGATCCCGTACTTACAACAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 72 bp TTTTCCTTTGCCTTGGAGAACTTCATGCCGCTCACGTaGATAGTGCAAAGATCTGATGGCTTCCTGGCAGAG +
Preference number: 6 (lower is better)
Translates to: FSFALENFMPLT*IVQRSDGFLAE
Trigger: CTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS TCA 72 bp GCAACCGAAGGAGACTTTTGGCTGGAAAGCAGTTGTTaGGGCAAGGCTTGCCATTGTCCATTTTGTACATTC +
Preference number: 6 (lower is better)
Translates to: ATEGDFWLESSC*GKACHCPFCTF
Trigger: GAATGTACAAAATGGACAATGGCAAGCCTTGCCTCAACAACTGCTTTCCAGCCAAAAGTCTCCTTCGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CCA 72 bp AAAGACCGGTCCAAAATGTGTCCAAGAACGTCTGCCTaGCTATCCCTCCGAGATATTTTCTTCAACCCAGTA +
Preference number: 6 (lower is better)
Translates to: KDRSKMCPRTSA*LSLRDIFFNPV
Trigger: TACTGGGTTGAAGAAAATATCTCGGAGGGATAGCCAGGCAGACGTTCTTGGACACATTTTGGACCGGTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CCA 72 bp TTGATAGTGCAAAGATCTGATGGCTTCCTGGCAGAGTaGTGCTTCAGCAGAAAAGACCGGTCCAAAATGTGT +
Preference number: 6 (lower is better)
Translates to: LIVQRSDGFLAE*CFSRKDRSKMC
Trigger: ACACATTTTGGACCGGTCTTTTCTGCTGAAGCACCACTCTGCCAGGAAGCCATCAGATCTTTGCACTATCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
ENSMUST00000208354.2
CDS CCA 72 bp GTCAACGTCCTTCTTCATGGGCAGTACGGTATAATTTaGTTGCTCATCAGGTGTCTCAAATATCCACATCTG +
Preference number: 6 (lower is better)
Translates to: VNVLLHGQYGII*LLIRCLKYPHL
Trigger: CAGATGTGGATATTTGAGACACCTGATGAGCAACCAAATTATACCGTACTGCCCATGAAGAAGGACGTTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CAA 72 bp GGTCAACGTCCTTCTTCATGGGCAGTACGGTATAATTaGGTTGCTCATCAGGTGTCTCAAATATCCACATCT +
Preference number: 6 (lower is better)
Translates to: GQRPSSWAVRYN*VAHQVSQISTS
Trigger: AGATGTGGATATTTGAGACACCTGATGAGCAACCAAATTATACCGTACTGCCCATGAAGAAGGACGTTGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS CCA 72 bp TTCACCTTCCGTGACTCCTTCCGAGGCATCAACATATaGTGTTTAGGTTTTACCAGTTTCTTTCGAACTAAG +
Preference number: 6 (lower is better)
Translates to: FTFRDSFRGINI*CLGFTSFFRTK
Trigger: CTTAGTTCGAAAGAAACTGGTAAAACCTAAACACCATATGTTGATGCCTCGGAAGGAGTCACGGAAGGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036155.10
CDS CAA 72 bp ACAGACGTAAAATGTTTGAAGTCCTTTTCCTTTGCCTaGGAGAACTTCATGCCGCTCACGTTGATAGTGCAA +
Preference number: 6 (lower is better)
Translates to: TDVKCLKSFSFA*ENFMPLTLIVQ
Trigger: TTGCACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAAGGACTTCAAACATTTTACGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2
CDS GCA 72 bp AATCACAGACGTAAAATGTTTGAAGTCCTTTTCCTTTaGCTTGGAGAACTTCATGCCGCTCACGTTGATAGT +
Preference number: 6 (lower is better)
Translates to: NHRRKMFEVLFL*LGELHAAHVDS
Trigger: ACTATCAACGTGAGCGGCATGAAGTTCTCCAAGGCAAAGGAAAAGGACTTCAAACATTTTACGTCTGTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036155.10
ENSMUST00000207855.2