Pregenerated sensors for XRCC6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022471Ensembl transcript IDs: ENSMUST00000069530.13, ENSMUST00000100399.11, ENSMUST00000230729.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTAGCAGGTGGCCTGGCTaGAGTGTAGAAAGTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: GTVRWETVISMILHLSSSSRWPG*SVESGW Trigger: CCAGCCACTTTCTACACTGCAGCCAGGCCACCTGCT...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| 3UTR-3UTR GCA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATAGCAGGTGGCCTGGCTaGAGTGTAGAAAGTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHSRWPG*SVESGW Trigger: CCAGCCACTTTCTACACTGCAGCCAGGCCACCTGCT...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| 3UTR-3UTR GCA 90 bp | CTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATAGCAGGTGGCCTGGCTaGAGTGTAGAAAGTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: LFIHRVRHSEVGDCNLHDSRWPG*SVESGW Trigger: CCAGCCACTTTCTACACTGCAGCCAGGCCACCTGCT...ATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| 3UTR-3UTR CCA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTCACAAGCAGGTGGCCTaGCTGCAGTGTAGAAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: GTVRWETVISMILHLSSSHKQVA*LQCRKW Trigger: CCACTTTCTACACTGCAGCCAGGCCACCTGCTTGTG...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGCACAAGCAGGTGGCCTaGCTGCAGTGTAGAAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: TVRWETVISMILHLSSSLHKQVA*LQCRKW Trigger: CCACTTTCTACACTGCAGCCAGGCCACCTGCTTGTG...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| 3UTR-3UTR CCA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTAAGAACACAAGCAGGTaGCCTGGCTGCAGTGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: GTVRWETVISMILHLSSSKNTSR*PGCSVE Trigger: TTCTACACTGCAGCCAGGCCACCTGCTTGTGTTCTT...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| 3UTR-3UTR CCA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATAAGAACACAAGCAGGTaGCCTGGCTGCAGTGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHKNTSR*PGCSVE Trigger: TTCTACACTGCAGCCAGGCCACCTGCTTGTGTTCTT...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| 3UTR-3UTR CCA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTCACAAGCAGGTGGCCTaGCTGCAGTGTAGAAAGTGG | + |
|
Preference number: 2 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFHKQVA*LQCRKW Trigger: CCACTTTCTACACTGCAGCCAGGCCACCTGCTTGTG...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CCA 90 bp | CTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATGGAGGTCGCTGGCTTTaGTCCTGGCCCGGCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LFIHRVRHSEVGDCNLHDGGRWL*SWPGWL Trigger: AAGCCAGCCGGGCCAGGACCAAAGCCAGCGACCTCC...ATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR TCA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATCTTGACTCCTCGAAGTaGACCCCAAGGTCCTCGTCC | + |
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Preference number: 4 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHLDSSK*TPRSSS Trigger: GGACGAGGACCTTGGGGTTCACTTCGAGGAGTCAAG...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR TCA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATAGCGCTGAACAAGGTTaGGCTCCCACTGACCAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHSAEQG*APTDQG Trigger: TCCCTGGTCAGTGGGAGCTCAACCTTGTTCAGCGCT...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CCA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGGAGGTCGCTGGCTTTaGTCCTGGCCCGGCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFGGRWL*SWPGWL Trigger: AAGCCAGCCGGGCCAGGACCAAAGCCAGCGACCTCC...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CCA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGGGAGGAAGACAAGCTaGAAGCCTCCTGGAGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHGRKTS*KPPGVT Trigger: GGTGACTCCAGGAGGCTTCCAGCTTGTCTTCCTCCC...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR TCA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTCTTGACTCCTCGAAGTaGACCCCAAGGTCCTCGTCC | + |
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Preference number: 4 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFLDSSK*TPRSSS Trigger: GGACGAGGACCTTGGGGTTCACTTCGAGGAGTCAAG...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR GCA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTCATCTTGTCTATCTaGTCCTGGTTGGCCGTCACC | + |
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Preference number: 4 (lower is better) Translates to: GTVRWETVISMILHLSSSFILSI*SWLAVT Trigger: GGTGACGGCCAACCAGGAGCAGATAGACAAGATGAA...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR TCA 90 bp | CTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATAGCATGATCCTCTTGTaGCTCATCTTGAGCTGGACG | + |
|
Preference number: 4 (lower is better) Translates to: LFIHRVRHSEVGDCNLHDSMILL*LILSWT Trigger: CGTCCAGCTCAAGATGAGTCACAAGAGGATCATGCT...ATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR GCA 90 bp | CTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATGCAGGTCTTCCAGCTTaGTTGACTCCTCGAAGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LFIHRVRHSEVGDCNLHDAGLPA*LTPRSE Trigger: TTCACTTCGAGGAGTCAAGCAAGCTGGAAGACCTGC...ATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CCA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATACAGAACTCGCTTTTTaGTCTCCTTGGCTCGAACCT | + |
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Preference number: 4 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHTELAF*SPWLEP Trigger: AGGTTCGAGCCAAGGAGACCAAAAAGCGAGTTCTGT...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CCA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTGTGCCCTTACGAAAATaGGCCTTCAGCTCTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: GTVRWETVISMILHLSSSVPLRK*AFSSSS Trigger: AGAAGAAGAGCTGAAGGCCCATTTTCGTAAGGGCAC...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR GCA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGGCAGGTCTTCCAGCTTaGTTGACTCCTCGAAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: TVRWETVISMILHLSSSLAGLPA*LTPRSE Trigger: TTCACTTCGAGGAGTCAAGCAAGCTGGAAGACCTGC...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR GCA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGTTCATCTTGTCTATCTaGTCCTGGTTGGCCGTCACC | + |
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Preference number: 4 (lower is better) Translates to: TVRWETVISMILHLSSSLFILSI*SWLAVT Trigger: GGTGACGGCCAACCAGGAGCAGATAGACAAGATGAA...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR TCA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTAGCATGATCCTCTTGTaGCTCATCTTGAGCTGGACG | + |
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Preference number: 4 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFSMILL*LILSWT Trigger: CGTCCAGCTCAAGATGAGTCACAAGAGGATCATGCT...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR GCA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTTTCATCTTGTCTATCTaGTCCTGGTTGGCCGTCACC | + |
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Preference number: 4 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFFILSI*SWLAVT Trigger: GGTGACGGCCAACCAGGAGCAGATAGACAAGATGAA...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CCA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGACAGAACTCGCTTTTTaGTCTCCTTGGCTCGAACCT | + |
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Preference number: 4 (lower is better) Translates to: TVRWETVISMILHLSSSLTELAF*SPWLEP Trigger: AGGTTCGAGCCAAGGAGACCAAAAAGCGAGTTCTGT...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CCA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTCATCTTGTTTTCTCTTaGCAACTTTTCCCTCGGGAT | + |
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Preference number: 4 (lower is better) Translates to: GTVRWETVISMILHLSSSHLVFS*QLFPRD Trigger: ATCCCGAGGGAAAAGTTGCCAAGAGAAAACAAGATG...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CCA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGGTGCCCTTACGAAAATaGGCCTTCAGCTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TVRWETVISMILHLSSSLVPLRK*AFSSSS Trigger: AGAAGAAGAGCTGAAGGCCCATTTTCGTAAGGGCAC...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CCA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGTGCCCTTACGAAAATaGGCCTTCAGCTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFVPLRK*AFSSSS Trigger: AGAAGAAGAGCTGAAGGCCCATTTTCGTAAGGGCAC...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CCA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGCATCTTGTTTTCTCTTaGCAACTTTTCCCTCGGGAT | + |
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Preference number: 4 (lower is better) Translates to: TVRWETVISMILHLSSSLHLVFS*QLFPRD Trigger: ATCCCGAGGGAAAAGTTGCCAAGAGAAAACAAGATG...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATCGGAGGTCGCTGGCTTaGGTCCTGGCCCGGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHRRSLA*VLARLA Trigger: AGCCAGCCGGGCCAGGACCAAAGCCAGCGACCTCCG...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CAA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGCGGAGGTCGCTGGCTTaGGTCCTGGCCCGGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: TVRWETVISMILHLSSSLRRSLA*VLARLA Trigger: AGCCAGCCGGGCCAGGACCAAAGCCAGCGACCTCCG...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CAA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTGACAGAACTCGCTTTTaGGTCTCCTTGGCTCGAACC | + |
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Preference number: 5 (lower is better) Translates to: GTVRWETVISMILHLSSSDRTRF*VSLART Trigger: GGTTCGAGCCAAGGAGACCAAAAAGCGAGTTCTGTC...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CAA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTCTATCTGCTCCTGGTaGGCCGTCACCTTCTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: GTVRWETVISMILHLSSSSICSW*AVTFSV Trigger: TACTGAGAAGGTGACGGCCAACCAGGAGCAGATAGA...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATTCTATCTGCTCCTGGTaGGCCGTCACCTTCTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHSICSW*AVTFSV Trigger: TACTGAGAAGGTGACGGCCAACCAGGAGCAGATAGA...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGGTGCTTCTTCCCCTGTaGTCCCTTAAACTGGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: TVRWETVISMILHLSSSLVLLPL*SLKLVE Trigger: CTCGACCAGTTTAAGGGACAACAGGGGAAGAAGCAC...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CAA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGTCTATCTGCTCCTGGTaGGCCGTCACCTTCTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: TVRWETVISMILHLSSSLSICSW*AVTFSV Trigger: TACTGAGAAGGTGACGGCCAACCAGGAGCAGATAGA...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATACAATGGCCTTCATCTaGTCTATCTGCTCCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHTMAFI*SICSWL Trigger: CAACCAGGAGCAGATAGACAAGATGAAGGCCATTGT...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTACAATGGCCTTCATCTaGTCTATCTGCTCCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: GTVRWETVISMILHLSSSTMAFI*SICSWL Trigger: CAACCAGGAGCAGATAGACAAGATGAAGGCCATTGT...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS CCA 90 bp | TTCAGTGTAGGTACAGTGAGCTTACCCAGTGTGCCCTTACGAAAATaGGCCTTCAGCTCTTCTTCTGATAACTCTACCTTGGGCTTTTTA | + |
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Preference number: 5 (lower is better) Translates to: FSVGTVSLPSVPLRK*AFSSSSDNSTLGFL Trigger: TAAAAAGCCCAAGGTAGAGTTATCAGAAGAAGAGCTGAAGGCCCATTTTCGTAAGGGCACACTGGGTAAGCTCACTGTACCTACACTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGTGCTTCTTCCCCTGTaGTCCCTTAAACTGGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFVLLPL*SLKLVE Trigger: CTCGACCAGTTTAAGGGACAACAGGGGAAGAAGCAC...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 |
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| CDS-3UTR CAA 90 bp | CTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATACAATGGCCTTCATCTaGTCTATCTGCTCCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LFIHRVRHSEVGDCNLHDTMAFI*SICSWL Trigger: CAACCAGGAGCAGATAGACAAGATGAAGGCCATTGT...ATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | GGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTTATGGCTTCAACCTaGGGTAGTGTCAGATCTACC | + |
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Preference number: 5 (lower is better) Translates to: GTVRWETVISMILHLSSSFMAST*GSVRST Trigger: GGTAGATCTGACACTACCCAAGGTTGAAGCCATAAA...AGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATTTTATGGCTTCAACCTaGGGTAGTGTCAGATCTACC | + |
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Preference number: 5 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHFMAST*GSVRST Trigger: GGTAGATCTGACACTACCCAAGGTTGAAGCCATAAA...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | GAGCTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATTCATCTTGTTTTCTCTaGGCAACTTTTCCCTCGGGA | + |
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Preference number: 5 (lower is better) Translates to: ELFIHRVRHSEVGDCNLHSSCFL*ATFPSG Trigger: TCCCGAGGGAAAAGTTGCCAAGAGAAAACAAGATGA...ATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | CTCTTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTCATCTTGTTTTCTCTaGGCAACTTTTCCCTCGGGA | + |
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Preference number: 5 (lower is better) Translates to: LFIHRVRHSEVGDCNLHDSSCFL*ATFPSG Trigger: TCCCGAGGGAAAAGTTGCCAAGAGAAAACAAGATGA...ATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | ACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTGCACTTAAGTAGCTCTTTGTTTATGGCTTCAACCTaGGGTAGTGTCAGATCTACC | + |
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Preference number: 5 (lower is better) Translates to: TVRWETVISMILHLSSSLFMAST*GSVRST Trigger: GGTAGATCTGACACTACCCAAGGTTGAAGCCATAAA...CAAAGAGCTACTTAAGTGCAAAATCATGGAGATTACAGTCTCCCACCTCACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS-3UTR CAA 90 bp | TTTATTCACAGAGTAAGGCACAGTGAGGTGGGAGACTGTAATCTCCATGATTTTTCATCTTGTTTTCTCTaGGCAACTTTTCCCTCGGGA | + |
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Preference number: 5 (lower is better) Translates to: FIHRVRHSEVGDCNLHDFSSCFL*ATFPSG Trigger: TCCCGAGGGAAAAGTTGCCAAGAGAAAACAAGATGA...AAAATCATGGAGATTACAGTCTCCCACCTCACTGTGCCTTACTCTGTGAATAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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| CDS CCA 72 bp | GGTACAGTGAGCTTACCCAGTGTGCCCTTACGAAAATaGGCCTTCAGCTCTTCTTCTGATAACTCTACCTTG | + |
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Preference number: 6 (lower is better) Translates to: GTVSLPSVPLRK*AFSSSSDNSTL Trigger: CAAGGTAGAGTTATCAGAAGAAGAGCTGAAGGCCCATTTTCGTAAGGGCACACTGGGTAAGCTCACTGTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069530.13 ENSMUST00000100399.11 ENSMUST00000230729.2 |
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