RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for XRCC5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026187

Ensembl transcript IDs: ENSMUST00000027379.10

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCCAGAGCTGGCACTCTTaGATTCCCCACACATCCATG +
Preference number: 2 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSQSWHS*IPHTSM
Trigger: CATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTG...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
3UTR GCA 72 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATaGTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACT +
Preference number: 3 (lower is better)
Translates to: VQSFTSPARPQG*CQSSQQHRAGT
Trigger: AGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCGGGCCAATGGTCAGTTaGCAGGGCCAGGGCATGGAA +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSGPMVS*QGQGME
Trigger: TTCCATGCCCTGGCCCTGCCAACTGACCATTGGCCC...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTGAGGGAAGGAGGGTTTaGGGTGGTCCAAGCCAGAGT +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAEGRRV*GGPSQS
Trigger: ACTCTGGCTTGGACCACCTCAAACCCTCCTTCCCTC...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCAAGGAGGGTTTGAGGTaGTCCAAGCCAGAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSKEGLR*SKPESR
Trigger: CCTGGACTCTGGCTTGGACCACCTCAAACCCTCCTT...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTGGCAGGGCCAGGGCATaGAACGCCTCTCAATCTTCT +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAGRARA*NASQSS
Trigger: AGAAGATTGAGAGGCGTTCCATGCCCTGGCCCTGCC...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTGCGGGCCCCTCTTCATaGTTGTCTTGGAAAACGTCC +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAAGPSS*LSWKTS
Trigger: GGACGTTTTCCAAGACAATCATGAAGAGGGGCCCGC...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCGAAAGGAGTTACCCATaGCAACCCCCACATCCACAC +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSERSYP*QPPHPH
Trigger: GTGTGGATGTGGGGGTTGCCATGGGTAACTCCTTTC...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATACAAGTTGGGGCCAATaGTCAGTTGGCAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHTSWGQ*SVGRAR
Trigger: CCTGGCCCTGCCAACTGACCATTGGCCCCAACTTGT...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGTCAGCTGGGCCTCTGTaGGAGTGCACTTCTTATTGT +
Preference number: 4 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQSAGPL*ECTSYC
Trigger: ACAATAAGAAGTGCACTCCCACAGAGGCCCAGCTGA...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGTCAGTAAGTCCTTTTTaGGGGAAGGAGGGTTTGAGG +
Preference number: 4 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQSVSPF*GKEGLR
Trigger: CCTCAAACCCTCCTTCCCTCAAAAAGGACTTACTGA...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATCACTTCCAACCTTGGTaGTGTTCCCTTCTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: ARALSSTELALLDSPHIHHFQPW*CSLLPG
Trigger: GCCTGGCAGAAGGGAACATCACCAAGGTTGGAAGTG...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTGAAGCGCTGTTCTTCTaGAAACTGAATGGCCTCCTC +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAEALFF*KLNGLL
Trigger: GAGGAGGCCATTCAGTTTTCAGAAGAACAGCGCTTC...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATGGAAAGGGCAACAGCTaGCGCCTCATCATCCTTTGC +
Preference number: 4 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHGKGNS*RLIILC
Trigger: GCAAAGGATGATGAGGCGGCAGCTGTTGCCCTTTCC...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTTGGAAAACGTCCTaGGCAGTCACTTGGTTCTTT +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSSWKTS*AVTWFF
Trigger: AAAGAACCAAGTGACTGCTCAGGACGTTTTCCAAGA...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCGGGCCTCTGTGGGAGTaGACTTCTTATTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSGPLWE*TSYCFS
Trigger: TGAAAAACAATAAGAAGTGCACTCCCACAGAGGCCC...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTTGCTTTCATCTCAGTaGGGGGATCCAGCATATTCA +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSLLSSQ*GDPAYS
Trigger: TGAATATGCTGGATCCCCCCACTGAGATGAAAGCAA...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATCACACTGTGATGTTCTaGTACTGGTCCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: ARALSSTELALLDSPHIHHTVMF*YWSLPA
Trigger: TGCTGGCAAGGACCAGTATCAGAACATCACAGTGTG...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATGGTGTCTGCACACTGTaGTGTTCTGATACTGGTCCT +
Preference number: 4 (lower is better)
Translates to: ARALSSTELALLDSPHIHGVCTL*CSDTGP
Trigger: AGGACCAGTATCAGAACATCACAGTGTGCAGACACC...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp ATGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACAGCCGCAAGTCTTCCATaGAAGGCAGCTGCACATAAA +
Preference number: 4 (lower is better)
Translates to: MLPELSAAQSWHSWIPHTAASLP*KAAAHK
Trigger: TTTATGTGCAGCTGCCTTTCATGGAAGACTTGCGGC...TGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGACGCAATCTCATCTTTaGTCTCCGAAAATACCTGTC +
Preference number: 4 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQTQSHL*SPKIPV
Trigger: GACAGGTATTTTCGGAGAGCAAAGATGAGATTGCGT...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCGAACTTGATGTCCCATaGAGAATCTTCTATGAACCT +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSELDVP*RIFYEP
Trigger: AGGTTCATAGAAGATTCTTCATGGGACATCAAGTTC...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGCACTGGTACAATCGCTaGAATTCAGGATTTGGAATT +
Preference number: 4 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQHWYNR*NSGFGI
Trigger: AATTCCAAATCCTGAATTTCAGCGATTGTACCAGTG...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCAGAGTAACTCCATCCTaGACAACAATTTCCCAGAAA +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSRVTPS*TTISQK
Trigger: TTTCTGGGAAATTGTTGTTCAGGATGGAGTTACTCT...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATGCTGAATCAAATCCATaGACACAATCAGGGCGTCCA +
Preference number: 4 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHAESNP*TQSGRP
Trigger: TGGACGCCCTGATTGTGTGCATGGATTTGATTCAGC...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCGAGGAAAACATGTATTaGCGCAAGTCTTCCATGAAA +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSEENMY*RKSSMK
Trigger: TTTCATGGAAGACTTGCGGCAATACATGTTTTCCTC...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCTTCTGAAAACTGAATaGCCTCCTCCCGGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHLLKTE*PPPGKL
Trigger: AAGCTTTCCGGGAGGAGGCCATTCAGTTTTCAGAAG...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTAAGGCTACACCAACTTaGGGATTAGATCTTTTGTCA +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAKATPT*GLDLLS
Trigger: TGACAAAAGATCTAATCCTCAAGTTGGTGTAGCCTT...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATTATCAGTGCCATCTGTaGCATAGAGGACTAACGCAA +
Preference number: 4 (lower is better)
Translates to: ARALSSTELALLDSPHIHYQCHL*HRGLTQ
Trigger: TTGCGTTAGTCCTCTATGGCACAGATGGCACTGATA...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCGGATGCCTTCCTTTTaGTGCTCAGTAAGTCCTTTT +
Preference number: 4 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHRMPSF*CSVSPF
Trigger: AAAAGGACTTACTGAGCAGCAAAAGGAAGGCATCCG...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATTGCTGGGAACTTGGCTaGATTTTGTTTCCGATGTCT +
Preference number: 4 (lower is better)
Translates to: ARALSSTELALLDSPHIHCWELG*ILFPMS
Trigger: AGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCA...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTGCCATTCTTGTCGATTaGAAAAGGCAAAAAGAACTG +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAAILVD*KRQKEL
Trigger: CAGTTCTTTTTGCCTTTTCCAATCGACAAGAATGGC...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp ATGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACACTTTTGCTTTGTCTTTaGGGGCCAGAAACTTTGTGG +
Preference number: 4 (lower is better)
Translates to: MLPELSAAQSWHSWIPHTLLLCL*GPETLW
Trigger: CCACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAG...TGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTAAGACCTTTAGAACTTaGTGTCCCATGAAGAATCTT +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAKTFRT*CPMKNL
Trigger: AAGATTCTTCATGGGACATCAAGTTCTAAAGGTCTT...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATCTGGAGATGCTGATGTaGTCTTCTTCTTTCTCAGTT +
Preference number: 4 (lower is better)
Translates to: ARALSSTELALLDSPHIHLEMLM*SSSFSV
Trigger: AACTGAGAAAGAAGAAGATCACATCAGCATCTCCAG...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGAGTCATCACTTTCTTTaGTTGTTCAATTGGAGATTC +
Preference number: 4 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQSHHFL*LFNWRF
Trigger: GAATCTCCAATTGAACAAGCAAAGAAAGTGATGACT...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTGTGAACACTTCAATATaGTTCTTCCCAAACTTCTTC +
Preference number: 4 (lower is better)
Translates to: MTSRASHPLHGLRDAARAVNTSI*FFPNFF
Trigger: GAAGAAGTTTGGGAAGAAGCATATTGAAGTGTTCAC...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR GCA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATAGAACTGCAGAGAGATaGCAGACTTCTTCAAGTTAC +
Preference number: 4 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHRTAER*QTSSSY
Trigger: GTAACTTGAAGAAGTCTGGCATCTCTCTGCAGTTCT...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp GATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCCTTTACTTTAGAGAGTaGACTCTCACATTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: DDVQSFTSPARPQGCCQSLYFRE*TLTFCF
Trigger: AAAGCAAAATGTGAGAGTCCACTCTCTAAAGTAAAG...GCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR TCA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATGTCGTAGACTCTCACTaGAGGAATAAATTTCATCCA +
Preference number: 4 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHVVDSH*RNKFHP
Trigger: TGGATGAAATTTATTCCTTCAGTGAGAGTCTACGAC...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CCA 90 bp ATGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACACTTTGCTTGTTCAATTaGAGATTCTTCACCAGGAAA +
Preference number: 4 (lower is better)
Translates to: MLPELSAAQSWHSWIPHTLCLFN*RFFTRK
Trigger: TTTCCTGGTGAAGAATCTCCAATTGAACAAGCAAAG...TGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGGGGGCCAATGGTCAGTaGGCAGGGCCAGGGCATGGA +
Preference number: 5 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQGANGQ*AGPGHG
Trigger: TCCATGCCCTGGCCCTGCCAACTGACCATTGGCCCC...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTAGGACAGCATCACCCTaGTCACCATGCGGATGCCTT +
Preference number: 5 (lower is better)
Translates to: MTSRASHPLHGLRDAARARTASP*SPCGCL
Trigger: AAGGCATCCGCATGGTGACAAGGGTGATGCTGTCCT...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCGGCTTGCTGGGAACTaGGCTGGATTTTGTTTCCGA +
Preference number: 5 (lower is better)
Translates to: MTSRASHPLHGLRDAARARLAGN*AGFCFR
Trigger: TCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCG...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp ATGACGTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTGCTTCCAGGAAGCTGTaGAAGCGCTGTTCTTCTGAA +
Preference number: 5 (lower is better)
Translates to: MTSRASHPLHGLRDAARAASRKL*KRCSSE
Trigger: TTCAGAAGAACAGCGCTTCAACAGCTTCCTGGAAGC...AGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGACGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGATCTTTATAGACAAGTaGGGGCCAATGGTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQIFIDK*GPMVSW
Trigger: CCAACTGACCATTGGCCCCAACTTGTCTATAAAGAT...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGTCTTTTGCTTTGTCTTaGGGGGCCAGAAACTTTGTG +
Preference number: 5 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQSFALS*GARNFV
Trigger: CACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAGA...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp GTCCAGAGCTTCACATCCCCTGCACGGCCTCAGGGATGCTGCCAGAGCTCTCAGGTATCTTCTTTTGCTTaGTCTTTGGGGGCCAGAAAC +
Preference number: 5 (lower is better)
Translates to: VQSFTSPARPQGCCQSSQVSSFA*SLGARN
Trigger: GTTTCTGGCCCCCAAAGACAAAGCAAAAGAAGATAC...CTGAGAGCTCTGGCAGCATCCCTGAGGCCGTGCAGGGGATGTGAAGCTCTGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATGCGGATGCCTTCCTTTaGCTGCTCAGTAAGTCCTTT +
Preference number: 5 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHADAFL*LLSKSF
Trigger: AAAGGACTTACTGAGCAGCAAAAGGAAGGCATCCGC...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCTCAGTAAGTCCTTTTaGAGGGAAGGAGGGTTTGAG +
Preference number: 5 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHLSKSF*REGGFE
Trigger: CTCAAACCCTCCTTCCCTCAAAAAGGACTTACTGAG...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCGTTGTATCTTCTTTaGCTTTGTCTTTGGGGGCCA +
Preference number: 5 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHPLYLL*LCLWGP
Trigger: TGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGG...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp GGGGGCCAGAAACTTTGTGGCTTCCTCAGCTGTGATAGAGCTTCCTaGGCCTTCGTCTTTGGTGATCAGAGTAACTCCATCCTGAACAAC +
Preference number: 5 (lower is better)
Translates to: GGQKLCGFLSCDRAS*AFVFGDQSNSILNN
Trigger: GTTGTTCAGGATGGAGTTACTCTGATCACCAAAGACGAAGGCCCAGGAAGCTCTATCACAGCTGAGGAAGCCACAAAGTTTCTGGCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCGAGGAAAACATGTATaGCCGCAAGTCTTCCATGAA +
Preference number: 5 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHRGKHV*PQVFHE
Trigger: TTCATGGAAGACTTGCGGCAATACATGTTTTCCTCG...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATCTCTTCATGATTGTCTaGGAAAACGTCCTGAGCAGT +
Preference number: 5 (lower is better)
Translates to: ARALSSTELALLDSPHIHLFMIV*ENVLSS
Trigger: ACTGCTCAGGACGTTTTCCAAGACAATCATGAAGAG...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp TGCTGCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATACTTGGTTCTTTTTCTaGATGACTTCTGTGAGAGGG +
Preference number: 5 (lower is better)
Translates to: CCQSSQQHRAGTLGFPTHTWFFF*MTSVRG
Trigger: CCCTCTCACAGAAGTCATCAAGAAAAAGAACCAAGT...ATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGCAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 90 bp CGAAGGGCTTCCAGGAAGCTGTTGAAGCGCTGTTCTTCTGAAAACTaGATGGCCTCCTCCCGGAAAGCTTTGATGCAGTCCATACTTTTC +
Preference number: 5 (lower is better)
Translates to: RRASRKLLKRCSSEN*MASSRKALMQSILF
Trigger: GAAAAGTATGGACTGCATCAAAGCTTTCCGGGAGGAGGCCATTCAGTTTTCAGAAGAACAGCGCTTCAACAGCTTCCTGGAAGCCCTTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 90 bp TTTCTCTCGAAGGGCTTCCAGGAAGCTGTTGAAGCGCTGTTCTTCTaGAAACTGAATGGCCTCCTCCCGGAAAGCTTTGATGCAGTCCAT +
Preference number: 5 (lower is better)
Translates to: FLSKGFQEAVEALFF*KLNGLLPESFDAVH
Trigger: ATGGACTGCATCAAAGCTTTCCGGGAGGAGGCCATTCAGTTTTCAGAAGAACAGCGCTTCAACAGCTTCCTGGAAGCCCTTCGAGAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS GCA 90 bp TCTTCCCAAACTTCTTCCCTATGGTTTCACGCTGAATCAAATCCATaGACACAATCAGGGCGTCCAGGAAGTCGGCTTGCTGGGAACTTG +
Preference number: 5 (lower is better)
Translates to: SSQTSSLWFHAESNP*TQSGRPGSRLAGNL
Trigger: CAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATTGTGTGCATGGATTTGATTCAGCGTGAAACCATAGGGAAGAAGTTTGGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS-3UTR CAA 90 bp GCCAGAGCTCTCAGCAGCACAGAGCTGGCACTCTTGGATTCCCCACACATCCATTCTTTGCTTGTTCAATaGGAGATTCTTCACCAGGAA +
Preference number: 5 (lower is better)
Translates to: ARALSSTELALLDSPHIHSLLVQ*EILHQE
Trigger: TTCCTGGTGAAGAATCTCCAATTGAACAAGCAAAGA...ATGGATGTGTGGGGAATCCAAGAGTGCCAGCTCTGTGCTGCTGAGAGCTCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp ATCAAATCCATGCACACAATCAGGGCGTCCAGGAAGTCGGCTTGCTaGGAACTTGGCTGGATTTTGTTTCCGATGTCTTCCAGCAAATCA +
Preference number: 5 (lower is better)
Translates to: IKSMHTIRASRKSAC*ELGWILFPMSSSKS
Trigger: TGATTTGCTGGAAGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATTGTGTGCATGGATTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 90 bp CTTCCAGCAAATCAAAATCTGGTAGCATCAGGTGTCTGCACACTGTaGTGTTCTGATACTGGTCCTTGCCAGCAAGGGCATTATCAGTGC +
Preference number: 5 (lower is better)
Translates to: LPANQNLVASGVCTL*CSDTGPCQQGHYQC
Trigger: GCACTGATAATGCCCTTGCTGGCAAGGACCAGTATCAGAACATCACAGTGTGCAGACACCTGATGCTACCAGATTTTGATTTGCTGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp TTGCTTGTTCAATTGGAGATTCTTCACCAGGAAAGGAGTTACCCATaGCAACCCCCACATCCACACACAGCACAACAGCTGCCTTATTAC +
Preference number: 5 (lower is better)
Translates to: LLVQLEILHQERSYP*QPPHPHTAQQLPYY
Trigger: GTAATAAGGCAGCTGTTGTGCTGTGTGTGGATGTGGGGGTTGCCATGGGTAACTCCTTTCCTGGTGAAGAATCTCCAATTGAACAAGCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS GCA 90 bp TCTGATACTGGTCCTTGCCAGCAAGGGCATTATCAGTGCCATCTGTaGCATAGAGGACTAACGCAATCTCATCTTTGCTCTCCGAAAATA +
Preference number: 5 (lower is better)
Translates to: SDTGPCQQGHYQCHL*HRGLTQSHLCSPKI
Trigger: TATTTTCGGAGAGCAAAGATGAGATTGCGTTAGTCCTCTATGGCACAGATGGCACTGATAATGCCCTTGCTGGCAAGGACCAGTATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp CTGTCGTTGGACAAACATAGTCATCACTTTCTTTGCTTGTTCAATTaGAGATTCTTCACCAGGAAAGGAGTTACCCATGGCAACCCCCAC +
Preference number: 5 (lower is better)
Translates to: LSLDKHSHHFLCLFN*RFFTRKGVTHGNPH
Trigger: GTGGGGGTTGCCATGGGTAACTCCTTTCCTGGTGAAGAATCTCCAATTGAACAAGCAAAGAAAGTGATGACTATGTTTGTCCAACGACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp ATGCCAGACTTCTTCAAGTTACAAATTATAACGTCCAGTTGGTCCTaGCTGAACGGGCTGCTGAGGTCAGTGAACACTTCAATATGCTTC +
Preference number: 5 (lower is better)
Translates to: MPDFFKLQIITSSWS*LNGLLRSVNTSICF
Trigger: GAAGCATATTGAAGTGTTCACTGACCTCAGCAGCCCGTTCAGCCAGGACCAACTGGACGTTATAATTTGTAACTTGAAGAAGTCTGGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp AGAGAGATGCCAGACTTCTTCAAGTTACAAATTATAACGTCCAGTTaGTCCTGGCTGAACGGGCTGCTGAGGTCAGTGAACACTTCAATA +
Preference number: 5 (lower is better)
Translates to: REMPDFFKLQIITSS*SWLNGLLRSVNTSI
Trigger: TATTGAAGTGTTCACTGACCTCAGCAGCCCGTTCAGCCAGGACCAACTGGACGTTATAATTTGTAACTTGAAGAAGTCTGGCATCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp TTTACCAAGCTCATGGAATCAATCAGATCATCAATAGCGCTCAGCTaGGCCTCTGTGGGAGTGCACTTCTTATTGTTTTTCAGCGAGGAA +
Preference number: 5 (lower is better)
Translates to: FTKLMESIRSSIALS*ASVGVHFLLFFSEE
Trigger: TTCCTCGCTGAAAAACAATAAGAAGTGCACTCCCACAGAGGCCCAGCTGAGCGCTATTGATGATCTGATTGATTCCATGAGCTTGGTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 90 bp ATTGTTCGATGTGACTTATTAACTGGAGACTCGCTTCCTCAAAGCTaGCAATCTTCTGTCTTACTAGGAAACGGAAGTTTTCAACAGGAT +
Preference number: 5 (lower is better)
Translates to: IVRCDLLTGDSLPQS*QSSVLLGNGSFQQD
Trigger: ATCCTGTTGAAAACTTCCGTTTCCTAGTAAGACAGAAGATTGCCAGCTTTGAGGAAGCGAGTCTCCAGTTAATAAGTCACATCGAACAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp ATGCACACAATCAGGGCGTCCAGGAAGTCGGCTTGCTaGGAACTTGGCTGGATTTTGTTTCCGATGTCTTCC +
Preference number: 6 (lower is better)
Translates to: MHTIRASRKSAC*ELGWILFPMSS
Trigger: GGAAGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATTGTGTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp ATCCATGCACACAATCAGGGCGTCCAGGAAGTCGGCTaGCTGGGAACTTGGCTGGATTTTGTTTCCGATGTC +
Preference number: 6 (lower is better)
Translates to: IHAHNQGVQEVG*LGTWLDFVSDV
Trigger: GACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATTGTGTGCATGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 72 bp TCCAGGAAGCTGTTGAAGCGCTGTTCTTCTGAAAACTaGATGGCCTCCTCCCGGAAAGCTTTGATGCAGTCC +
Preference number: 6 (lower is better)
Translates to: SRKLLKRCSSEN*MASSRKALMQS
Trigger: GGACTGCATCAAAGCTTTCCGGGAGGAGGCCATTCAGTTTTCAGAAGAACAGCGCTTCAACAGCTTCCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp AATCAGGGCGTCCAGGAAGTCGGCTTGCTGGGAACTTaGCTGGATTTTGTTTCCGATGTCTTCCAGCAAATC +
Preference number: 6 (lower is better)
Translates to: NQGVQEVGLLGT*LDFVSDVFQQI
Trigger: GATTTGCTGGAAGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp ACAATCTTTATAGACAAGTTGGGGCCAATGGTCAGTTaGCAGGGCCAGGGCATGGAACGCCTCTCAATCTTC +
Preference number: 6 (lower is better)
Translates to: TIFIDKLGPMVS*QGQGMERLSIF
Trigger: GAAGATTGAGAGGCGTTCCATGCCCTGGCCCTGCCAACTGACCATTGGCCCCAACTTGTCTATAAAGATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp CAATCAGGGCGTCCAGGAAGTCGGCTTGCTGGGAACTaGGCTGGATTTTGTTTCCGATGTCTTCCAGCAAAT +
Preference number: 6 (lower is better)
Translates to: QSGRPGSRLAGN*AGFCFRCLPAN
Trigger: ATTTGCTGGAAGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp GCGCTCAGCTGGGCCTCTGTGGGAGTGCACTTCTTATaGTTTTTCAGCGAGGAAAACATGTATTGCCGCAAG +
Preference number: 6 (lower is better)
Translates to: ALSWASVGVHFL*FFSEENMYCRK
Trigger: CTTGCGGCAATACATGTTTTCCTCGCTGAAAAACAATAAGAAGTGCACTCCCACAGAGGCCCAGCTGAGCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp ATCAGGGCGTCCAGGAAGTCGGCTTGCTGGGAACTTGGCTGGATTTaGTTTCCGATGTCTTCCAGCAAATCAAAATCTGGTAGCATCAGG +
Preference number: 6 (lower is better)
Translates to: IRASRKSACWELGWI*FPMSSSKSKSGSIR
Trigger: CCTGATGCTACCAGATTTTGATTTGCTGGAAGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp CTGAATCAAATCCATGCACACAATCAGGGCGTCCAGGAAGTCGGCTaGCTGGGAACTTGGCTGGATTTTGTTTCCGATGTCTTCCAGCAA +
Preference number: 6 (lower is better)
Translates to: LNQIHAHNQGVQEVG*LGTWLDFVSDVFQQ
Trigger: TTGCTGGAAGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATTGTGTGCATGGATTTGATTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 72 bp AAGGGCTTCCAGGAAGCTGTTGAAGCGCTGTTCTTCTaGAAACTGAATGGCCTCCTCCCGGAAAGCTTTGAT +
Preference number: 6 (lower is better)
Translates to: KGFQEAVEALFF*KLNGLLPESFD
Trigger: ATCAAAGCTTTCCGGGAGGAGGCCATTCAGTTTTCAGAAGAACAGCGCTTCAACAGCTTCCTGGAAGCCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS GCA 72 bp GGTCCTTGCCAGCAAGGGCATTATCAGTGCCATCTGTaGCATAGAGGACTAACGCAATCTCATCTTTGCTCT +
Preference number: 6 (lower is better)
Translates to: GPCQQGHYQCHL*HRGLTQSHLCS
Trigger: AGAGCAAAGATGAGATTGCGTTAGTCCTCTATGGCACAGATGGCACTGATAATGCCCTTGCTGGCAAGGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS GCA 72 bp ACTTCTTCCCTATGGTTTCACGCTGAATCAAATCCATaGACACAATCAGGGCGTCCAGGAAGTCGGCTTGCT +
Preference number: 6 (lower is better)
Translates to: TSSLWFHAESNP*TQSGRPGSRLA
Trigger: AGCAAGCCGACTTCCTGGACGCCCTGATTGTGTGCATGGATTTGATTCAGCGTGAAACCATAGGGAAGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp TACAATCTTTATAGACAAGTTGGGGCCAATGGTCAGTaGGCAGGGCCAGGGCATGGAACGCCTCTCAATCTT +
Preference number: 6 (lower is better)
Translates to: YNLYRQVGANGQ*AGPGHGTPLNL
Trigger: AAGATTGAGAGGCGTTCCATGCCCTGGCCCTGCCAACTGACCATTGGCCCCAACTTGTCTATAAAGATTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 72 bp TTTCCACTTTCTCTCGAAGGGCTTCCAGGAAGCTGTTaGAGCGCTGTTCTTCTGAAAACTGAATGGCCTCCT +
Preference number: 6 (lower is better)
Translates to: FPLSLEGLPGSC*SAVLLKTEWPP
Trigger: AGGAGGCCATTCAGTTTTCAGAAGAACAGCGCTTCAACAGCTTCCTGGAAGCCCTTCGAGAGAAAGTGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp CCAGACTTCTTCAAGTTACAAATTATAACGTCCAGTTaGTCCTGGCTGAACGGGCTGCTGAGGTCAGTGAAC +
Preference number: 6 (lower is better)
Translates to: PDFFKLQIITSS*SWLNGLLRSVN
Trigger: GTTCACTGACCTCAGCAGCCCGTTCAGCCAGGACCAACTGGACGTTATAATTTGTAACTTGAAGAAGTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp AAACTTTGTGGCTTCCTCAGCTGTGATAGAGCTTCCTaGGCCTTCGTCTTTGGTGATCAGAGTAACTCCATC +
Preference number: 6 (lower is better)
Translates to: KLCGFLSCDRAS*AFVFGDQSNSI
Trigger: GATGGAGTTACTCTGATCACCAAAGACGAAGGCCCAGGAAGCTCTATCACAGCTGAGGAAGCCACAAAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp AAACGGAAGTTTTCAACAGGATTCACACTTCCAACCTaGGTGATGTTCCCTTCTGCCAGGCTGGAGATGCTG +
Preference number: 6 (lower is better)
Translates to: KRKFSTGFTLPT*VMFPSARLEML
Trigger: CAGCATCTCCAGCCTGGCAGAAGGGAACATCACCAAGGTTGGAAGTGTGAATCCTGTTGAAAACTTCCGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp TCTTCAGGTCCCGTTGTATCTTCTTTTGCTTTGTCTTaGGGGGCCAGAAACTTTGTGGCTTCCTCAGCTGTG +
Preference number: 6 (lower is better)
Translates to: SSGPVVSSFALS*GARNFVASSAV
Trigger: CACAGCTGAGGAAGCCACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGGGACCTGAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp TCATCAATAGCGCTCAGCTGGGCCTCTGTGGGAGTGCACTTCTTATaGTTTTTCAGCGAGGAAAACATGTATTGCCGCAAGTCTTCCATG +
Preference number: 6 (lower is better)
Translates to: SSIALSWASVGVHFL*FFSEENMYCRKSSM
Trigger: CATGGAAGACTTGCGGCAATACATGTTTTCCTCGCTGAAAAACAATAAGAAGTGCACTCCCACAGAGGCCCAGCTGAGCGCTATTGATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp TCCACATCACCAGCTTCTTCAGGTCCCGTTGTATCTTCTTTTGCTTaGTCTTTGGGGGCCAGAAACTTTGTGGCTTCCTCAGCTGTGATA +
Preference number: 6 (lower is better)
Translates to: STSPASSGPVVSSFA*SLGARNFVASSAVI
Trigger: TATCACAGCTGAGGAAGCCACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGGGACCTGAAGAAGCTGGTGATGTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp AATCATCCACATCACCAGCTTCTTCAGGTCCCGTTGTATCTTCTTTaGCTTTGTCTTTGGGGGCCAGAAACTTTGTGGCTTCCTCAGCTG +
Preference number: 6 (lower is better)
Translates to: NHPHHQLLQVPLYLL*LCLWGPETLWLPQL
Trigger: CAGCTGAGGAAGCCACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGGGACCTGAAGAAGCTGGTGATGTGGATGATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp TTTATAGGCTACAATCTTTATAGACAAGTTGGGGCCAATGGTCAGTaGGCAGGGCCAGGGCATGGAACGCCTCTCAATCTTCTTAAAGAC +
Preference number: 6 (lower is better)
Translates to: FIGYNLYRQVGANGQ*AGPGHGTPLNLLKD
Trigger: GTCTTTAAGAAGATTGAGAGGCGTTCCATGCCCTGGCCCTGCCAACTGACCATTGGCCCCAACTTGTCTATAAAGATTGTAGCCTATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 72 bp AATCAAAATCTGGTAGCATCAGGTGTCTGCACACTGTaGTGTTCTGATACTGGTCCTTGCCAGCAAGGGCAT +
Preference number: 6 (lower is better)
Translates to: NQNLVASGVCTL*CSDTGPCQQGH
Trigger: ATGCCCTTGCTGGCAAGGACCAGTATCAGAACATCACAGTGTGCAGACACCTGATGCTACCAGATTTTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS GCA 72 bp AGGATTCACACTTCCAACCTTGGTGATGTTCCCTTCTaGCAGGCTGGAGATGCTGATGTGATCTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: RIHTSNLGDVPF*QAGDADVIFFF
Trigger: AAAGAAGAAGATCACATCAGCATCTCCAGCCTGGCAGAAGGGAACATCACCAAGGTTGGAAGTGTGAATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp TCCAGGAAGTCGGCTTGCTGGGAACTTGGCTGGATTTaGTTTCCGATGTCTTCCAGCAAATCAAAATCTGGT +
Preference number: 6 (lower is better)
Translates to: SRKSACWELGWI*FPMSSSKSKSG
Trigger: ACCAGATTTTGATTTGCTGGAAGACATCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp CATCACCAGCTTCTTCAGGTCCCGTTGTATCTTCTTTaGCTTTGTCTTTGGGGGCCAGAAACTTTGTGGCTT +
Preference number: 6 (lower is better)
Translates to: HHQLLQVPLYLL*LCLWGPETLWL
Trigger: AAGCCACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGGGACCTGAAGAAGCTGGTGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp TCATGTCCAGTAAATCATCCACATCACCAGCTTCTTCAGGTCCCGTaGTATCTTCTTTTGCTTTGTCTTTGGGGGCCAGAAACTTTGTGG +
Preference number: 6 (lower is better)
Translates to: SCPVNHPHHQLLQVP*YLLLLCLWGPETLW
Trigger: CCACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGGGACCTGAAGAAGCTGGTGATGTGGATGATTTACTGGACATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp TTCTTCAAGTTACAAATTATAACGTCCAGTTGGTCCTaGCTGAACGGGCTGCTGAGGTCAGTGAACACTTCA +
Preference number: 6 (lower is better)
Translates to: FFKLQIITSSWS*LNGLLRSVNTS
Trigger: TGAAGTGTTCACTGACCTCAGCAGCCCGTTCAGCCAGGACCAACTGGACGTTATAATTTGTAACTTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp CTCATGGAATCAATCAGATCATCAATAGCGCTCAGCTaGGCCTCTGTGGGAGTGCACTTCTTATTGTTTTTC +
Preference number: 6 (lower is better)
Translates to: LMESIRSSIALS*ASVGVHFLLFF
Trigger: GAAAAACAATAAGAAGTGCACTCCCACAGAGGCCCAGCTGAGCGCTATTGATGATCTGATTGATTCCATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp GTAAATCATCCACATCACCAGCTTCTTCAGGTCCCGTaGTATCTTCTTTTGCTTTGTCTTTGGGGGCCAGAA +
Preference number: 6 (lower is better)
Translates to: VNHPHHQLLQVP*YLLLLCLWGPE
Trigger: TTCTGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGGGACCTGAAGAAGCTGGTGATGTGGATGATTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 72 bp TCAGCGAGGAAAACATGTATTGCCGCAAGTCTTCCATaGAAGGCAGCTGCACATAAACTAAACACTCATAGG +
Preference number: 6 (lower is better)
Translates to: SARKTCIAASLP*KAAAHKLNTHR
Trigger: CCTATGAGTGTTTAGTTTATGTGCAGCTGCCTTTCATGGAAGACTTGCGGCAATACATGTTTTCCTCGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS TCA 72 bp TGTAAGGCTCTATGCAGCAGACACTGGTACAATCGCTaGAATTCAGGATTTGGAATTTTGGAGGTTGGAAAC +
Preference number: 6 (lower is better)
Translates to: CKALCSRHWYNR*NSGFGILEVGN
Trigger: GTTTCCAACCTCCAAAATTCCAAATCCTGAATTTCAGCGATTGTACCAGTGTCTGCTGCATAGAGCCTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp TGTGACTTATTAACTGGAGACTCGCTTCCTCAAAGCTaGCAATCTTCTGTCTTACTAGGAAACGGAAGTTTT +
Preference number: 6 (lower is better)
Translates to: CDLLTGDSLPQS*QSSVLLGNGSF
Trigger: AAAACTTCCGTTTCCTAGTAAGACAGAAGATTGCCAGCTTTGAGGAAGCGAGTCTCCAGTTAATAAGTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp ATAGGCGTCCTTAATGTAAGGGAAGGCTACACCAACTaGAGGATTAGATCTTTTGTCATAAGCATATCGGAC +
Preference number: 6 (lower is better)
Translates to: IGVLNVREGYTN*RIRSFVISISD
Trigger: GTCCGATATGCTTATGACAAAAGATCTAATCCTCAAGTTGGTGTAGCCTTCCCTTACATTAAGGACGCCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp TTCATGATTGTCTTGGAAAACGTCCTGAGCAGTCACTaGGTTCTTTTTCTTGATGACTTCTGTGAGAGGGAA +
Preference number: 6 (lower is better)
Translates to: FMIVLENVLSSH*VLFLDDFCERE
Trigger: TTCCCTCTCACAGAAGTCATCAAGAAAAAGAACCAAGTGACTGCTCAGGACGTTTTCCAAGACAATCATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CCA 72 bp GCAATCTCATCTTTGCTCTCCGAAAATACCTGTCGTTaGACAAACATAGTCATCACTTTCTTTGCTTGTTCA +
Preference number: 6 (lower is better)
Translates to: AISSLLSENTCR*TNIVITFFACS
Trigger: TGAACAAGCAAAGAAAGTGATGACTATGTTTGTCCAACGACAGGTATTTTCGGAGAGCAAAGATGAGATTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 90 bp GACACTGGTACAATCGCTGAAATTCAGGATTTGGAATTTTGGAGGTaGGAAACAAATCTTCAACAATGTCTTCTTCCTCGTTTTTCTTTA +
Preference number: 6 (lower is better)
Translates to: DTGTIAEIQDLEFWR*ETNLQQCLLPRFSL
Trigger: TAAAGAAAAACGAGGAAGAAGACATTGTTGAAGATTTGTTTCCAACCTCCAAAATTCCAAATCCTGAATTTCAGCGATTGTACCAGTGTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10
CDS CAA 72 bp AACAGAGAAGCACTTCCCCTCAGATTTATATTTCATTaGTTCCTCATCCACTTTAGAAAAAGGAATGATATC +
Preference number: 6 (lower is better)
Translates to: NREALPLRFIFH*FLIHFRKRNDI
Trigger: GATATCATTCCTTTTTCTAAAGTGGATGAGGAACAAATGAAATATAAATCTGAGGGGAAGTGCTTCTCTGTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027379.10