Pregenerated sensors for XRCC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021615Ensembl transcript IDs: ENSMUST00000022115.14, ENSMUST00000159199.8, ENSMUST00000160232.8, ENSMUST00000161396.2
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGGACATCACTGGGAGGTGAGGTCCTTGGTCCTATGAAGCCTCTATaGCCCAGTGTAGGAGAATGCCAGGGCCAGGAAGCAGGAGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: RTSLGGEVLGPMKPL*PSVGECQGQEAGVG Trigger: ACCCACTCCTGCTTCCTGGCCCTGGCATTCTCCTACACTGGGGCATAGAGGCTTCATAGGACCAAGGACCTCACCTCCCAGTGATGTCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR GCA 90 bp | TTCATATTTCTGCAGGCCAACAACTGGCTGCCGCTGAGTAGTGATTaGTCTCCTTTAAAAAGGCCATCAGCCTCTGGGGAAGCCCAGTCT | + |
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Preference number: 1 (lower is better) Translates to: FIFLQANNWLPLSSD*SPLKRPSASGEAQS Trigger: AGACTGGGCTTCCCCAGAGGCTGATGGCCTTTTTAAAGGAGAGCAATCACTACTCAGCGGCAGCCAGTTGTTGGCCTGCAGAAATATGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR TCA 90 bp | GTGACCCAGACTCCTGAAAGGGTGATGTTTCCTTGCCAGGGGCTGTaGTATCAGTGTGCATTCAAAAATCCATGTGCATGTAAGGCAATA | + |
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Preference number: 1 (lower is better) Translates to: VTQTPERVMFPCQGL*YQCAFKNPCACKAI Trigger: TATTGCCTTACATGCACATGGATTTTTGAATGCACACTGATATCACAGCCCCTGGCAAGGAAACATCACCCTTTCAGGAGTCTGGGTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR TCA 90 bp | AGTTGTAAGTCTGTGCTCAGGGTCCCTTGCTTCCCATCTGTGTTCTaGTTTATTCAAGGGGAGCCTTACTGTAGAGTACAGAATTGGTTA | + |
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Preference number: 1 (lower is better) Translates to: SCKSVLRVPCFPSVF*FIQGEPYCRVQNWL Trigger: TAACCAATTCTGTACTCTACAGTAAGGCTCCCCTTGAATAAATCAGAACACAGATGGGAAGCAAGGGACCCTGAGCACAGACTTACAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR GCA 90 bp | GGGGAAGCCCAGTCTCTCTTCTCTTCCTTAATTCTAAGTTACCTTTaGTCTTTCAGTACCTCAATGGAGTGGCAACCATTTTCTTTGTAC | + |
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Preference number: 1 (lower is better) Translates to: GEAQSLFSSLILSYL*SFSTSMEWQPFSLY Trigger: GTACAAAGAAAATGGTTGCCACTCCATTGAGGTACTGAAAGAGCAAAGGTAACTTAGAATTAAGGAAGAGAAGAGAGACTGGGCTTCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | GAAGACAATGGTGGAAAGCAATGGGGAAAGACAAATGATAGAAGGCGTTGGGTCGAGTGGGTGGGTTGGTaGGCAGGGTTAGGGGGTAGG | + |
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Preference number: 2 (lower is better) Translates to: EDNGGKQWGKTNDRRRWVEWVGW*AGLGGR Trigger: CCTACCCCCTAACCCTGCTCACCAACCCACCCACTC...GACCCAACGCCTTCTATCATTTGTCTTTCCCCATTGCTTTCCACCATTGTCTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | TCAGGGTCCCTTGCTTCCCATCTGTGTTCTGATTTATTCAAGGGGAGCCTTACTAATGGGGAAAGGCGATaGGGGAAGGCAATCAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: SGSLASHLCSDLFKGSLTNGERR*GKAIRE Trigger: TTCCCTGATTGCCTTCCCCCATCGCCTTTCCCCATT...AGTAAGGCTCCCCTTGAATAAATCAGAACACAGATGGGAAGCAAGGGACCCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR GCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCCCCAGTGTAGGAGAATaGCAGGGCCAGGAAGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLPSVGE*QGQEAG Trigger: TCCTGCTTCCTGGCCCTGGCATTCTCCTACACTGGG...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCCGCTGAGTAGTGATTGCTCTCCTTTAAAAAGGCCATCAGCCTCTGGGGAAGATACCAACAGTGCTTaGTTACAGGAGCCTGATATA | + |
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Preference number: 2 (lower is better) Translates to: LPLSSDCSPLKRPSASGEDTNSA*LQEPDI Trigger: TATATCAGGCTCCTGTAAGCAAGCACTGTTGGTATC...TTCCCCAGAGGCTGATGGCCTTTTTAAAGGAGAGCAATCACTACTCAGCGGCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGAGCATATGATCCCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAAATCCACGATTTTCAATaGCACAGCAGCAAGGTGCAC | + |
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Preference number: 2 (lower is better) Translates to: TEHMIPNEGARERTQGAKIHDFQ*HSSKVH Trigger: GTGCACCTTGCTGCTGTGTCATTGAAAATCGTGGAT...TTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGATCATATGCTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCGATATAGCTCTCTCCTaGGAGGCTCTGCCAGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLDIALS*EALPVP Trigger: AGGCACTGGCAGAGCCTCTCAGGAGAGAGCTATATC...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCAGACTCCTGAAAGGGTaGTGTTTCCTTGCCAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLRLLKG*CFLARG Trigger: GCCCCTGGCAAGGAAACATCACCCTTTCAGGAGTCT...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | TATCTCCTTAGCATTTATCATCTTCAGATCTCTTCAAAGGTGTCAGCCAGCACACTAGTCGGACATCACTaGGAGGTGAGGTCCTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: YLLSIYHLQISSKVSASTLVGHH*EVRSLV Trigger: GACCAAGGACCTCACCTCCCAGTGATGTCCGACTAG...TGTGCTGGCTGACACCTTTGAAGAGATCTGAAGATGATAAATGCTAAGGAGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCACATGGTGGGACTCATaGCTCCAGCTGCATATGCAG | + |
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Preference number: 2 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLTWWDS*LQLHMQ Trigger: CTGCATATGCAGCTGGAGCCATGAGTCCCACCATGT...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | GAAGACAATGGTGGAAAGCAATGGGGAAAGACAAATGATAGAAGGCGTTGGGTCAAGAAGAGAGGACCATaGATGACTATCATCAGGATC | + |
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Preference number: 2 (lower is better) Translates to: EDNGGKQWGKTNDRRRWVKKRGP*MTIIRI Trigger: GATCCTGATGATAGTCATTCATGGTCCTCTCTTCTT...GACCCAACGCCTTCTATCATTTGTCTTTCCCCATTGCTTTCCACCATTGTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | ACAGGTGCTAGTTTCTATAGAAGAGAAGTAAAGGTGAATGGGAAAGAAGTCCAAGACATCACTGGGAGGTaGGGTCCTTGGTCCTATGAA | + |
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Preference number: 2 (lower is better) Translates to: TGASFYRREVKVNGKEVQDITGR*GPWSYE Trigger: TTCATAGGACCAAGGACCTCACCTCCCAGTGATGTC...TTGGACTTCTTTCCCATTCACCTTTACTTCTCTTCTATAGAAACTAGCACCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGGATGTCTTTCTAATTTCTACTTCATTACTGTTGAGGCAATGAGGAAATTGGGCTCCAGCTGCATATaGAGCAGAGGATGGCCTAGT | + |
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Preference number: 2 (lower is better) Translates to: SGCLSNFYFITVEAMRKLGSSCI*SRGWPS Trigger: ACTAGGCCATCCTCTGCTGCATATGCAGCTGGAGCC...CAATTTCCTCATTGCCTCAACAGTAATGAAGTAGAAATTAGAAAGACATCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR GCA 90 bp | TTCAGGCTTCTTTCCTGGGTCCATCTGCTACAGGTGCTAGTTTCTATAGAAGAGCTTTCAGGATTCCAATaGAATGAAGCAAAACTGCAG | + |
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Preference number: 2 (lower is better) Translates to: FRLLSWVHLLQVLVSIEELSGFQ*NEAKLQ Trigger: CTGCAGTTTTGCTTCATTGCATTGGAATCCTGAAAG...CTCTTCTATAGAAACTAGCACCTGTAGCAGATGGACCCAGGAAAGAAGCCTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR CAA 90 bp | TGGGGAAGCCCAGTCTCTCTTCTCTTCCTTAATTCTAAGTTACCTTaGCTCTTTCAGTACCTCAATGGAGTGGCAACCATTTTCTTTGTA | + |
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Preference number: 2 (lower is better) Translates to: WGSPVSLLFLNSKLP*LFQYLNGVATIFFV Trigger: TACAAAGAAAATGGTTGCCACTCCATTGAGGTACTGAAAGAGCAAAGGTAACTTAGAATTAAGGAAGAGAAGAGAGACTGGGCTTCCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCGAAGGTAGACACAATTaGAAGGCAGGTGACAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLEGRHN*KAGDSK Trigger: TTTGCTGTCACCTGCCTTCCAATTGTGTCTACCTTC...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | GTCAAATGGGCTTCTGGGTTTCTTGAAACTATTAGACAAGTAGCAACACTGGTTAGAGGAAGACAATGGTaGAAAGCAATGGGGAAAGAC | + |
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Preference number: 2 (lower is better) Translates to: VKWASGFLETIRQVATLVRGRQW*KAMGKD Trigger: GTCTTTCCCCATTGCTTTCCACCATTGTCTTCCTCT...AACCAGTGTTGCTACTTGTCTAATAGTTTCAAGAAACCCAGAAGCCCATTTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | TATCTCCTTAGCATTTATCATCTTCAGATCTCTTCAAAGGTGTCAGCCAGCACAATTAGACTGAGCATATaGTCCCCAATGAAGGAGCTA | + |
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Preference number: 2 (lower is better) Translates to: YLLSIYHLQISSKVSASTIRLSI*SPMKEL Trigger: TAGCTCCTTCATTGGGGATCATATGCTCAGTCTAAT...TGTGCTGGCTGACACCTTTGAAGAGATCTGAAGATGATAAATGCTAAGGAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR GCA 90 bp | TTCAGGCTTCTTTCCTGGGTCCATCTGCTACAGGTGCTAGTTTCTATAGAAGAGATTCTAAGTTACCTTTaGTCTTTCAGTACCTCAATG | + |
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Preference number: 2 (lower is better) Translates to: FRLLSWVHLLQVLVSIEEILSYL*SFSTSM Trigger: CATTGAGGTACTGAAAGAGCAAAGGTAACTTAGAAT...CTCTTCTATAGAAACTAGCACCTGTAGCAGATGGACCCAGGAAAGAAGCCTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | TCAGGATGTCTTTCTAATTTCTACTTCATTACTGTTGAGGCAATGAGGAAATTGAAAGAGTACACATGGTaGGACTCATGGCTCCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: SGCLSNFYFITVEAMRKLKEYTW*DSWLQL Trigger: CAGCTGGAGCCATGAGTCCCACCATGTGTACTCTTT...CAATTTCCTCATTGCCTCAACAGTAATGAAGTAGAAATTAGAAAGACATCCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGGATGTCTTTCTAATTTCTACTTCATTACTGTTGAGGCAATGAGGAAATTGCAATTGGAAGGCAGGTaGCAGCAAAAGGTAATGGTA | + |
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Preference number: 2 (lower is better) Translates to: SGCLSNFYFITVEAMRKLQLEGR*QQKVMV Trigger: TACCATTACCTTTTGCTGTCACCTGCCTTCCAATTG...CAATTTCCTCATTGCCTCAACAGTAATGAAGTAGAAATTAGAAAGACATCCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCAATGGTGGAAAGCAATaGGGAAAGACAAATGATAGA | + |
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Preference number: 2 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLNGGKQ*GKTNDR Trigger: TCTATCATTTGTCTTTCCCCATTGCTTTCCACCATT...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGGTGCTAGTTTCTATAGAAGAGAAGTAAAGGTGAATGGGAAAGAAGTCCAACTTTCAGTACCTCAATaGAGTGGCAACCATTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: TGASFYRREVKVNGKEVQLSVPQ*SGNHFL Trigger: AAGAAAATGGTTGCCACTCCATTGAGGTACTGAAAG...TTGGACTTCTTTCCCATTCACCTTTACTTCTCTTCTATAGAAACTAGCACCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCCTTTACTGGGTATTCTaGATTAAACTCGTTTCATAC | + |
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Preference number: 2 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLLYWVF*IKLVSY Trigger: GTATGAAACGAGTTTAATCCAGAATACCCAGTAAAG...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR GCA 72 bp | CTGGGAGGTGAGGTCCTTGGTCCTATGAAGCCTCTATaGCCCAGTGTAGGAGAATGCCAGGGCCAGGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: LGGEVLGPMKPL*PSVGECQGQEA Trigger: TGCTTCCTGGCCCTGGCATTCTCCTACACTGGGGCATAGAGGCTTCATAGGACCAAGGACCTCACCTCCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGCTTCTTTCCTGGGTCCATCTGCTACAGGTGCTAGTTTCTATAGAAGAGGCAGGAGTGGGTGGGTaGGTGAGCAGGGTTAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: FRLLSWVHLLQVLVSIEEAGVGG*VSRVRG Trigger: CCCCCTAACCCTGCTCACCAACCCACCCACTCCTGC...CTCTTCTATAGAAACTAGCACCTGTAGCAGATGGACCCAGGAAAGAAGCCTGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR GCA 72 bp | CTGCAGGCCAACAACTGGCTGCCGCTGAGTAGTGATTaGTCTCCTTTAAAAAGGCCATCAGCCTCTGGGGAA | + |
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Preference number: 3 (lower is better) Translates to: LQANNWLPLSSD*SPLKRPSASGE Trigger: TTCCCCAGAGGCTGATGGCCTTTTTAAAGGAGAGCAATCACTACTCAGCGGCAGCCAGTTGTTGGCCTGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR TCA 72 bp | GCAATGAGGAAATTGTTGAAAGGTGACCCAGACTCCTaGAAGGGTGATGTTTCCTTGCCAGGGGCTGTGATA | + |
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Preference number: 3 (lower is better) Translates to: AMRKLLKGDPDS*KGDVSLPGAVI Trigger: TATCACAGCCCCTGGCAAGGAAACATCACCCTTTCAGGAGTCTGGGTCACCTTTCAACAATTTCCTCATTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR TCA 72 bp | TCTGTGCTCAGGGTCCCTTGCTTCCCATCTGTGTTCTaGTTTATTCAAGGGGAGCCTTACTGTAGAGTACAG | + |
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Preference number: 3 (lower is better) Translates to: SVLRVPCFPSVF*FIQGEPYCRVQ Trigger: CTGTACTCTACAGTAAGGCTCCCCTTGAATAAATCAGAACACAGATGGGAAGCAAGGGACCCTGAGCACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR TCA 72 bp | AGCAGCAAGGTGCACTCTTGTAAGAAGAGAGGACCATaGATGACTATCATCAGGATCTCATTCTTCCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: SSKVHSCKKRGP*MTIIRISFFQP Trigger: AGGCTGGAAGAATGAGATCCTGATGATAGTCATTCATGGTCCTCTCTTCTTACAAGAGTGCACCTTGCTGCT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR TCA 72 bp | ACTCCTGAAAGGGTGATGTTTCCTTGCCAGGGGCTGTaGTATCAGTGTGCATTCAAAAATCCATGTGCATGT | + |
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Preference number: 3 (lower is better) Translates to: TPERVMFPCQGL*YQCAFKNPCAC Trigger: ACATGCACATGGATTTTTGAATGCACACTGATATCACAGCCCCTGGCAAGGAAACATCACCCTTTCAGGAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CAA 90 bp | GTCAAATGGGCTTCTGGGTTTCTTGAAACTATTAGACAAGTAGCAACACTGGTTAAGGGTGATGTTTCCTaGCCAGGGGCTGTGATATCA | + |
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Preference number: 3 (lower is better) Translates to: VKWASGFLETIRQVATLVKGDVS*PGAVIS Trigger: TGATATCACAGCCCCTGGCAAGGAAACATCACCCTT...AACCAGTGTTGCTACTTGTCTAATAGTTTCAAGAAACCCAGAAGCCCATTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR CCA 72 bp | AACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTaGGACATGAACCTCTCTGGCAACAGAGGCAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: NLKMLRNVDLDL*DMNLSGNRGKL Trigger: CAGCTTGCCTCTGTTGCCAGAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR CCA 72 bp | TTTATTCAAGGGGAGCCTTACTGTAGAGTACAGAATTaGTTAGGTCTTTCAGGCTTCTTTCCTGGGTCCATC | + |
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Preference number: 3 (lower is better) Translates to: FIQGEPYCRVQN*LGLSGFFPGSI Trigger: GATGGACCCAGGAAAGAAGCCTGAAAGACCTAACCAATTCTGTACTCTACAGTAAGGCTCCCCTTGAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR CCA 72 bp | AGTACAGAATTGGTTAGGTCTTTCAGGCTTCTTTCCTaGGTCCATCTGCTACAGGTGCTAGTTTCTATAGAA | + |
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Preference number: 3 (lower is better) Translates to: STELVRSFRLLS*VHLLQVLVSIE Trigger: TTCTATAGAAACTAGCACCTGTAGCAGATGGACCCAGGAAAGAAGCCTGAAAGACCTAACCAATTCTGTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CAA 90 bp | GTCAAATGGGCTTCTGGGTTTCTTGAAACTATTAGACAAGTAGCAACACTGGTTATGTACCTCAAAAAGTaGGCCAGACATTGGTTGGAA | + |
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Preference number: 3 (lower is better) Translates to: VKWASGFLETIRQVATLVMYLKK*ARHWLE Trigger: TTCCAACCAATGTCTGGCCAACTTTTTGAGGTACAT...AACCAGTGTTGCTACTTGTCTAATAGTTTCAAGAAACCCAGAAGCCCATTTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR-3UTR CAA 90 bp | ACAGGTGCTAGTTTCTATAGAAGAGAAGTAAAGGTGAATGGGAAAGAAGTCCAATGGCAACCATTTTCTTaGTACAAGGGAATCATATGG | + |
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Preference number: 3 (lower is better) Translates to: TGASFYRREVKVNGKEVQWQPFS*YKGIIW Trigger: CCATATGATTCCCTTGTACAAAGAAAATGGTTGCCA...TTGGACTTCTTTCCCATTCACCTTTACTTCTCTTCTATAGAAACTAGCACCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| CDS-3UTR TCA 90 bp | ACTGAGCATATGATCCCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAATGTACCAGCTGCTCCTaGCCCTGGCACCAGTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: TEHMIPNEGARERTQGAKCTSCS*PWHQCL Trigger: AAGGCACTGGTGCCAGGGTCAGGAGCAGCTGGTACA...TTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGATCATATGCTCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| CDS-3UTR GCA 90 bp | CCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAAGGGGTTTGCAGCCCTACCTCTTCCTACTTGGTaGAATGTCAGTGACATCCGG | + |
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Preference number: 4 (lower is better) Translates to: PMKELEKGPKELKGFAALPLPTW*NVSDIR Trigger: CCGGATGTCACTGACATTGCACCAAGTAGGAAGAGG...TAGGGCTGCAAACCCCTTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| CDS-3UTR CCA 90 bp | CTGCCGCTGAGTAGTGATTGCTCTCCTTTAAAAAGGCCATCAGCCTCTGGGGAAGCAGTCCAGGCTGAATaGCCGTCAGTAAGTGTAATA | + |
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Preference number: 4 (lower is better) Translates to: LPLSSDCSPLKRPSASGEAVQAE*PSVSVI Trigger: TATTACACTTACTGACGGCCATTCAGCCTGGACTGC...TTCCCCAGAGGCTGATGGCCTTTTTAAAGGAGAGCAATCACTACTCAGCGGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| 3UTR CAA 72 bp | GTCCACCCCATAAACAACCACCAAAACCAGACACTGTaGTGGATACCAACAGTGCTTGCTTACAGGAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: VHPINNHQNQTL*WIPTVLAYRSL Trigger: CAGGCTCCTGTAAGCAAGCACTGTTGGTATCCACAACAGTGTCTGGTTTTGGTGGTTGTTTATGGGGTGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| CDS-3UTR GCA 90 bp | CTGCCGCTGAGTAGTGATTGCTCTCCTTTAAAAAGGCCATCAGCCTCTGGGGAAGTACTCTCCTCCAGCTaGTGGACTTCATTTAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: LPLSSDCSPLKRPSASGEVLSSS*WTSFSN Trigger: ATTGCTAAATGAAGTCCAGCAGCTGGAGGAGAGTAC...TTCCCCAGAGGCTGATGGCCTTTTTAAAGGAGAGCAATCACTACTCAGCGGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| CDS-3UTR TCA 90 bp | CCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAAGGGGTTTGCAGCCCTATTGGTGCAATGTCAGTaGCATCCGGACTTGAAAATA | + |
|
Preference number: 4 (lower is better) Translates to: PMKELEKGPKELKGFAALLVQCQ*HPDLKI Trigger: TATTTTCAAGTCCGGATGTCACTGACATTGCACCAA...TAGGGCTGCAAACCCCTTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR GCA 90 bp | CTGCCGCTGAGTAGTGATTGCTCTCCTTTAAAAAGGCCATCAGCCTCTGGGGAATTCTCAAGGGAGAAATaGCGAGACTCCTTAGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LPLSSDCSPLKRPSASGEFSREK*RDSLEK Trigger: CTTTTCTAAGGAGTCTCGGCATTTCTCCCTTGAGAA...TTCCCCAGAGGCTGATGGCCTTTTTAAAGGAGAGCAATCACTACTCAGCGGCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR TCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTGTACCAGCTGCTCCTaGCCCTGGCACCAGTGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSCTSCS*PWHQCL Trigger: AAGGCACTGGTGCCAGGGTCAGGAGCAGCTGGTACA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | CAACTTAAAGATGCTAAGAAATGTAGATCTAGACCTCTGGGACATGAACCTCTCCTTATGAAGAGTTTCTaGAGCCTGCACAGGGGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: QLKDAKKCRSRPLGHEPLLMKSF*SLHRGS Trigger: GGAGCCCCTGTGCAGGCTGCAGAAACTCTTCATAAG...GAGAGGTTCATGTCCCAGAGGTCTAGATCTACATTTCTTAGCATCTTTAAGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR CCA 90 bp | TTCAGGCTTCTTTCCTGGGTCCATCTGCTACAGGTGCTAGTTTCTATAGAAGAGCCTCCAAGGCTTCTTTaGCACTCACACATTTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: FRLLSWVHLLQVLVSIEEPPRLL*HSHISQ Trigger: TTGAGAAATGTGTGAGTGCCAAAGAAGCCTTGGAGG...CTCTTCTATAGAAACTAGCACCTGTAGCAGATGGACCCAGGAAAGAAGCCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR GCA 90 bp | GAAGACAATGGTGGAAAGCAATGGGGAAAGACAAATGATAGAAGGCGTTGGGTCCACTTTCTTCATCGGTaGTTCCATCATAAAGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: EDNGGKQWGKTNDRRRWVHFLHR*FHHKAH Trigger: ATGGGCTTTATGATGGAAGCACCGATGAAGAAAGTG...GACCCAACGCCTTCTATCATTTGTCTTTCCCCATTGCTTTCCACCATTGTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTCTTATGAAGAGTTTCTaGAGCCTGCACAGGGGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSLMKSF*SLHRGS Trigger: GGAGCCCCTGTGCAGGCTGCAGAAACTCTTCATAAG...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR TCA 90 bp | ACTGAGCATATGATCCCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAAGGAACCAAGTCTGAATaGAACATCTTTCAGTTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: TEHMIPNEGARERTQGAKGTKSE*NIFQFF Trigger: AAAGAACTGAAAGATGTTTCATTCAGACTTGGTTCC...TTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGATCATATGCTCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTCCTCTTCCTACTTGGTaGAATGTCAGTGACATCCGG | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSPLPTW*NVSDIR Trigger: CCGGATGTCACTGACATTGCACCAAGTAGGAAGAGG...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CCA 90 bp | ACTGAGCATATGATCCCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAACCGGACTTGAAAATATaGAATCATCCTTATGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: TEHMIPNEGARERTQGAKPDLKI*NHPYEE Trigger: CTCTTCATAAGGATGATTCCATATTTTCAAGTCCGG...TTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGATCATATGCTCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR CCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTGCAGTCCAGGCTGAATaGCCGTCAGTAAGTGTAATA | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSAVQAE*PSVSVI Trigger: TATTACACTTACTGACGGCCATTCAGCCTGGACTGC...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTTTCCCTTTCAGGTTTaGTACTCTCCTCCAGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSFPFQV*YSPPAA Trigger: AGCAGCTGGAGGAGAGTACCAAACCTGAAAGGGAAA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTGTACTCTCCTCCAGCTaGTGGACTTCATTTAGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSVLSSS*WTSFSN Trigger: ATTGCTAAATGAAGTCCAGCAGCTGGAGGAGAGTAC...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTGTTTTCAGCAGAGGTaGTCTCCTCTTTCAAGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSCFQQR*SPLSRS Trigger: AGACCTTGAAAGAGGAGAGCACCTCTGCTGAAAACA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTAGAGATCTTCTGGGCTaGTGTTTCTCAGGGTTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSRDLLG*CFSGFL Trigger: TAGAAACCCTGAGAAACAGCAGCCCAGAAGATCTCT...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTCCTCCAAGGCTTCTTTaGCACTCACACATTTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSPPRLL*HSHISQ Trigger: TTGAGAAATGTGTGAGTGCCAAAGAAGCCTTGGAGG...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR TCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTTGGTGCAATGTCAGTaGCATCCGGACTTGAAAATA | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSLVQCQ*HPDLKI Trigger: TATTTTCAAGTCCGGATGTCACTGACATTGCACCAA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTTCTCAAGGGAGAAATaGCGAGACTCCTTAGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSFSREK*RDSLEK Trigger: CTTTTCTAAGGAGTCTCGGCATTTCTCCCTTGAGAA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTGCTCGTTTTTGGCTTaGTTTTCTGTAATGGTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSCSFLA*FSVMVS Trigger: GGACACCATTACAGAAAAGCAAGCCAAAAACGAGCA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTCACTTTCTTCATCGGTaGTTCCATCATAAAGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSHFLHR*FHHKAH Trigger: ATGGGCTTTATGATGGAAGCACCGATGAAGAAAGTG...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR TCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTAGTGACATCCGGACTTaGAAATATGGAATCATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSSDIRT*KYGIIL Trigger: AAGGATGATTCCATATTTTCAAGTCCGGATGTCACT...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR GCA 90 bp | TCAGGATGTCTTTCTAATTTCTACTTCATTACTGTTGAGGCAATGAGGAAATTGTGCTCGTTTTTGGCTTaGTTTTCTGTAATGGTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SGCLSNFYFITVEAMRKLCSFLA*FSVMVS Trigger: GGACACCATTACAGAAAAGCAAGCCAAAAACGAGCA...CAATTTCCTCATTGCCTCAACAGTAATGAAGTAGAAATTAGAAAGACATCCTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR GCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTTTTCTTTCTGCAGGTaGTCGTTTTTGGCTTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSFSFCR*SFLACF Trigger: AAAGCAAGCCAAAAACGAGCACCTGCAGAAAGAAAA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR TCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTGGAACCAAGTCTGAATaGAACATCTTTCAGTTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSGTKSE*NIFQFF Trigger: AAAGAACTGAAAGATGTTTCATTCAGACTTGGTTCC...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CCA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTCCGGACTTGAAAATATaGAATCATCCTTATGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LSSHPKELDKEYSSLNTSPDLKI*NHPYEE Trigger: CTCTTCATAAGGATGATTCCATATTTTCAAGTCCGG...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| 3UTR CAA 72 bp | CATACTAGTATGATTCATTGGGTACATATAGTAAAGTaGCAAGACATAGTAACCATGGCTGCTAAGTTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: HTSMIHWVHIVK*QDIVTMAAKLK Trigger: TTTCAACTTAGCAGCCATGGTTACTATGTCTTGCAACTTTACTATATGTACCCAATGAATCATACTAGTATG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS CCA 90 bp | TCTAAAGACATGTTTTCAGCAGAGGTGCTCTCCTCTTTCAAGGTCTaGGGTAGTGAAGAGGCAAGCCTTTCCTTCTCCTGTAGCGGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: SKDMFSAEVLSSFKV*GSEEASLSFSCSGN Trigger: GTTGCCGCTACAGGAGAAGGAAAGGCTTGCCTCTTCACTACCCCAGACCTTGAAAGAGGAGAGCACCTCTGCTGAAAACATGTCTTTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CAA 90 bp | CCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAAGGGGTTTGCAGCCCTACAAAGCCGGATCCTATaGTTCTCTCCCAAGACACTT | + |
|
Preference number: 5 (lower is better) Translates to: PMKELEKGPKELKGFAALQSRIL*FSPKTL Trigger: AAGTGTCTTGGGAGAGAACAATAGGATCCGGCTTTG...TAGGGCTGCAAACCCCTTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS TCA 90 bp | CCGAGACTCCTTAGAAAAGAGGAACTTGTATGTACCAGCTGCTCCTaGCCCTGGCACCAGTGCCTTTCTCAGCTCATCAATGTATTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: PRLLRKEELVCTSCS*PWHQCLSQLINVFS Trigger: GGAAAATACATTGATGAGCTGAGAAAGGCACTGGTGCCAGGGTCAGGAGCAGCTGGTACATACAAGTTCCTCTTTTCTAAGGAGTCTCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 ENSMUST00000160232.8 |
||
| CDS GCA 90 bp | GGCAACTCCTGTGGAGCCATTTTAGGTTCTGTCCCAAGATTCTTCTaGATTCGGTGTCTCCTCTTCCTACTTGGTGCAATGTCAGTGACA | + |
|
Preference number: 5 (lower is better) Translates to: GNSCGAILGSVPRFF*IRCLLFLLGAMSVT Trigger: TGTCACTGACATTGCACCAAGTAGGAAGAGGAGACACCGAATGCAGAAGAATCTTGGGACAGAACCTAAAATGGCTCCACAGGAGTTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | CCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAAGGGGTTTGCAGCCCTAGCAAGCTCCGGATCTTaGTTTTCTTCTCATTCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: PMKELEKGPKELKGFAALASSGS*FSSHSA Trigger: TGCTGAATGAGAAGAAAACAAAGATCCGGAGCTTGC...TAGGGCTGCAAACCCCTTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS TCA 90 bp | GCAATGTCAGTGACATCCGGACTTGAAAATATGGAATCATCCTTATaGAGAGTTTCTGCAGCCTGCACAGGGGCTCCACTTTCTTCATCG | + |
|
Preference number: 5 (lower is better) Translates to: AMSVTSGLENMESSL*RVSAACTGAPLSSS Trigger: CGATGAAGAAAGTGGAGCCCCTGTGCAGGCTGCAGAAACTCTTCATAAGGATGATTCCATATTTTCAAGTCCGGATGTCACTGACATTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
||
| CDS TCA 90 bp | GTGTCTCCTCTTCCTACTTGGTGCAATGTCAGTGACATCCGGACTTaGAAATATGGAATCATCCTTATGAAGAGTTTCTGCAGCCTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: VSPLPTWCNVSDIRT*KYGIILMKSFCSLH Trigger: GTGCAGGCTGCAGAAACTCTTCATAAGGATGATTCCATATTTTCAAGTCCGGATGTCACTGACATTGCACCAAGTAGGAAGAGGAGACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | ACTGAGCATATGATCCCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTAAATGCAGGTGCTCGTTTTaGGCTTGCTTTTCTGTAATG | + |
|
Preference number: 5 (lower is better) Translates to: TEHMIPNEGARERTQGAKCRCSF*ACFSVM Trigger: CATTACAGAAAAGCAAGCCAAAAACGAGCACCTGCA...TTTAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGATCATATGCTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | GAAGACAATGGTGGAAAGCAATGGGGAAAGACAAATGATAGAAGGCGTTGGGTCTCTCTCCCAAGACACTaGCAGAAAATAAGGTACGTT | + |
|
Preference number: 5 (lower is better) Translates to: EDNGGKQWGKTNDRRRWVSLPRH*QKIRYV Trigger: AACGTACCTTATTTTCTGCAAGTGTCTTGGGAGAGA...GACCCAACGCCTTCTATCATTTGTCTTTCCCCATTGCTTTCCACCATTGTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | GTCAAATGGGCTTCTGGGTTTCTTGAAACTATTAGACAAGTAGCAACACTGGTTGCCTCCAAGGCTTCTTaGGCACTCACACATTTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: VKWASGFLETIRQVATLVASKAS*ALTHFS Trigger: TGAGAAATGTGTGAGTGCCAAAGAAGCCTTGGAGGC...AACCAGTGTTGCTACTTGTCTAATAGTTTCAAGAAACCCAGAAGCCCATTTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | GTCAAATGGGCTTCTGGGTTTCTTGAAACTATTAGACAAGTAGCAACACTGGTTTTTTCCCTTTCAGGTTaGGTACTCTCCTCCAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: VKWASGFLETIRQVATLVFSLSG*VLSSSC Trigger: GCAGCTGGAGGAGAGTACCAAACCTGAAAGGGAAAA...AACCAGTGTTGCTACTTGTCTAATAGTTTCAAGAAACCCAGAAGCCCATTTGAC 44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS GCA 90 bp | GGTTTGGTACTCTCCTCCAGCTGCTGGACTTCATTTAGCAATTTATaGAAGCTCCGGATCTTTGTTTTCTTCTCATTCAGCACCAAGATA | + |
|
Preference number: 5 (lower is better) Translates to: GLVLSSSCWTSFSNL*KLRIFVFFSFSTKI Trigger: TATCTTGGTGCTGAATGAGAAGAAAACAAAGATCCGGAGCTTGCATAAATTGCTAAATGAAGTCCAGCAGCTGGAGGAGAGTACCAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
||
| CDS GCA 90 bp | CCAAGTCTGAATGAAACATCTTTCAGTTCTTTCTCAAGGGAGAAATaGCGAGACTCCTTAGAAAAGAGGAACTTGTATGTACCAGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: PSLNETSFSSFSREK*RDSLEKRNLYVPAA Trigger: AGCAGCTGGTACATACAAGTTCCTCTTTTCTAAGGAGTCTCGGCATTTCTCCCTTGAGAAAGAACTGAAAGATGTTTCATTCAGACTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTGCCTCCAAGGCTTCTTaGGCACTCACACATTTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSASKAS*ALTHFS Trigger: TGAGAAATGTGTGAGTGCCAAAGAAGCCTTGGAGGC...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTTTTCCCTTTCAGGTTaGGTACTCTCCTCCAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSFSLSG*VLSSSC Trigger: GCAGCTGGAGGAGAGTACCAAACCTGAAAGGGAAAA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS TCA 90 bp | CTCCGGATCTTTGTTTTCTTCTCATTCAGCACCAAGATAAATCTTTaGTACAAATCAGCCTCCAAGGCTTCTTTGGCACTCACACATTTC | + |
|
Preference number: 5 (lower is better) Translates to: LRIFVFFSFSTKINL*YKSASKASLALTHF Trigger: GAAATGTGTGAGTGCCAAAGAAGCCTTGGAGGCTGATTTGTATCAAAGATTTATCTTGGTGCTGAATGAGAAGAAAACAAAGATCCGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTCAAAGCCGGATCCTATaGTTCTCTCCCAAGACACTT | + |
|
Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSQSRIL*FSPKTL Trigger: AAGTGTCTTGGGAGAGAACAATAGGATCCGGCTTTG...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CAA 90 bp | TATCTCCTTAGCATTTATCATCTTCAGATCTCTTCAAAGGTGTCAGCCAGCACAGCTGAGTTTGAAACTTaGTCTAGGTTGAAGGAACCA | + |
|
Preference number: 5 (lower is better) Translates to: YLLSIYHLQISSKVSASTAEFET*SRLKEP Trigger: TGGTTCCTTCAACCTAGACAAAGTTTCAAACTCAGC...TGTGCTGGCTGACACCTTTGAAGAGATCTGAAGATGATAAATGCTAAGGAGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
||
| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTGCTCCTCAGGTGTTTaGTCAGAACACGGATTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSCSSGV*SEHGFS Trigger: GGAAAATCCGTGTTCTGACAAAACACCTGAGGAGCA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
||
| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTGCAGGTGCTCGTTTTaGGCTTGCTTTTCTGTAATG | + |
|
Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSCRCSF*ACFSVM Trigger: CATTACAGAAAAGCAAGCCAAAAACGAGCACCTGCA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
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| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTGCAAGCTCCGGATCTTaGTTTTCTTCTCATTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSASSGS*FSSHSA Trigger: TGCTGAATGAGAAGAAAACAAAGATCCGGAGCTTGC...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
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| CDS-3UTR CAA 90 bp | TCAGGATGTCTTTCTAATTTCTACTTCATTACTGTTGAGGCAATGAGGAAATTGTGCTCCTCAGGTGTTTaGTCAGAACACGGATTTTCC | + |
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Preference number: 5 (lower is better) Translates to: SGCLSNFYFITVEAMRKLCSSGV*SEHGFS Trigger: GGAAAATCCGTGTTCTGACAAAACACCTGAGGAGCA...CAATTTCCTCATTGCCTCAACAGTAATGAAGTAGAAATTAGAAAGACATCCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159199.8 |
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| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTTCTCTCCCAAGACACTaGCAGAAAATAAGGTACGTT | + |
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Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSSLPRH*QKIRYV Trigger: AACGTACCTTATTTTCTGCAAGTGTCTTGGGAGAGA...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
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| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTGCTGAGTTTGAAACTTaGTCTAGGTTGAAGGAACCA | + |
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Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSAEFET*SRLKEP Trigger: TGGTTCCTTCAACCTAGACAAAGTTTCAAACTCAGC...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
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| CDS-3UTR CAA 90 bp | CTGTCTTCTCATCCAAAGGAACTGGATAAAGAATATAGTTCATTGAACACCAGTGAAACTTTGTCTAGGTaGAAGGAACCAAGTCTGAAT | + |
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Preference number: 5 (lower is better) Translates to: LSSHPKELDKEYSSLNTSETLSR*KEPSLN Trigger: ATTCAGACTTGGTTCCTTCAACCTAGACAAAGTTTC...ACTGGTGTTCAATGAACTATATTCTTTATCCAGTTCCTTTGGATGAGAAGACAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
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| CDS GCA 72 bp | CTGCAGCCTGCACAGGGGCTCCACTTTCTTCATCGGTaGTTCCATCATAAAGCCCATGCTCCTCAGGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: LQPAQGLHFLHR*FHHKAHAPQVF Trigger: AAACACCTGAGGAGCATGGGCTTTATGATGGAAGCACCGATGAAGAAAGTGGAGCCCCTGTGCAGGCTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS CAA 72 bp | AGGGAGAAATGCCGAGACTCCTTAGAAAAGAGGAACTaGTATGTACCAGCTGCTCCTGACCCTGGCACCAGT | + |
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Preference number: 6 (lower is better) Translates to: REKCRDSLEKRN*YVPAAPDPGTS Trigger: ACTGGTGCCAGGGTCAGGAGCAGCTGGTACATACAAGTTCCTCTTTTCTAAGGAGTCTCGGCATTTCTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS CCA 72 bp | ATGTTTTCAGCAGAGGTGCTCTCCTCTTTCAAGGTCTaGGGTAGTGAAGAGGCAAGCCTTTCCTTCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: MFSAEVLSSFKV*GSEEASLSFSC Trigger: ACAGGAGAAGGAAAGGCTTGCCTCTTCACTACCCCAGACCTTGAAAGAGGAGAGCACCTCTGCTGAAAACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022115.14 |
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| CDS TCA 72 bp | CTTAGAAAAGAGGAACTTGTATGTACCAGCTGCTCCTaGCCCTGGCACCAGTGCCTTTCTCAGCTCATCAAT | + |
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Preference number: 6 (lower is better) Translates to: LRKEELVCTSCS*PWHQCLSQLIN Trigger: ATTGATGAGCTGAGAAAGGCACTGGTGCCAGGGTCAGGAGCAGCTGGTACATACAAGTTCCTCTTTTCTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 ENSMUST00000160232.8 |
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| CDS TCA 72 bp | GTGACATCCGGACTTGAAAATATGGAATCATCCTTATaGAGAGTTTCTGCAGCCTGCACAGGGGCTCCACTT | + |
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Preference number: 6 (lower is better) Translates to: VTSGLENMESSL*RVSAACTGAPL Trigger: AAGTGGAGCCCCTGTGCAGGCTGCAGAAACTCTTCATAAGGATGATTCCATATTTTCAAGTCCGGATGTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS GCA 72 bp | TGTGGAGCCATTTTAGGTTCTGTCCCAAGATTCTTCTaGATTCGGTGTCTCCTCTTCCTACTTGGTGCAATG | + |
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Preference number: 6 (lower is better) Translates to: CGAILGSVPRFF*IRCLLFLLGAM Trigger: CATTGCACCAAGTAGGAAGAGGAGACACCGAATGCAGAAGAATCTTGGGACAGAACCTAAAATGGCTCCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS TCA 72 bp | GGAAATCTCCAATTCAGAAACTGTTGCAGTCCAGGCTaGATGGCCGTCAGTAAGTGTAATAACAAAGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: GNLQFRNCCSPG*MAVSKCNNKAG Trigger: TCCGGCTTTGTTATTACACTTACTGACGGCCATTCAGCCTGGACTGCAACAGTTTCTGAATTGGAGATTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 ENSMUST00000160232.8 ENSMUST00000161396.2 |
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| CDS CCA 72 bp | ATCTCCAATTCAGAAACTGTTGCAGTCCAGGCTGAATaGCCGTCAGTAAGTGTAATAACAAAGCCGGATCCT | + |
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Preference number: 6 (lower is better) Translates to: ISNSETVAVQAE*PSVSVITKPDP Trigger: AGGATCCGGCTTTGTTATTACACTTACTGACGGCCATTCAGCCTGGACTGCAACAGTTTCTGAATTGGAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 ENSMUST00000160232.8 ENSMUST00000161396.2 |
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| CDS CCA 72 bp | GTGTTTTGTCAGAACACGGATTTTCCCTTTCAGGTTTaGTACTCTCCTCCAGCTGCTGGACTTCATTTAGCA | + |
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Preference number: 6 (lower is better) Translates to: VFCQNTDFPFQV*YSPPAAGLHLA Trigger: TGCTAAATGAAGTCCAGCAGCTGGAGGAGAGTACCAAACCTGAAAGGGAAAATCCGTGTTCTGACAAAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS GCA 72 bp | CTCTCCTCCAGCTGCTGGACTTCATTTAGCAATTTATaGAAGCTCCGGATCTTTGTTTTCTTCTCATTCAGC | + |
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Preference number: 6 (lower is better) Translates to: LSSSCWTSFSNL*KLRIFVFFSFS Trigger: GCTGAATGAGAAGAAAACAAAGATCCGGAGCTTGCATAAATTGCTAAATGAAGTCCAGCAGCTGGAGGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS TCA 72 bp | CTTCCTACTTGGTGCAATGTCAGTGACATCCGGACTTaGAAATATGGAATCATCCTTATGAAGAGTTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: LPTWCNVSDIRT*KYGIILMKSFC Trigger: GCAGAAACTCTTCATAAGGATGATTCCATATTTTCAAGTCCGGATGTCACTGACATTGCACCAAGTAGGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS CAA 90 bp | GCTCCGGATCTTTGTTTTCTTCTCATTCAGCACCAAGATAAATCTTaGATACAAATCAGCCTCCAAGGCTTCTTTGGCACTCACACATTT | + |
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Preference number: 6 (lower is better) Translates to: APDLCFLLIQHQDKS*IQISLQGFFGTHTF Trigger: AAATGTGTGAGTGCCAAAGAAGCCTTGGAGGCTGATTTGTATCAAAGATTTATCTTGGTGCTGAATGAGAAGAAAACAAAGATCCGGAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS TCA 72 bp | TTTGTTTTCTTCTCATTCAGCACCAAGATAAATCTTTaGTACAAATCAGCCTCCAAGGCTTCTTTGGCACTC | + |
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Preference number: 6 (lower is better) Translates to: FVFFSFSTKINL*YKSASKASLAL Trigger: GAGTGCCAAAGAAGCCTTGGAGGCTGATTTGTATCAAAGATTTATCTTGGTGCTGAATGAGAAGAAAACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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| CDS CAA 90 bp | ATGAGATCTCTTATGACTTCAGCTGAGTTTGAAACTTTGTCTAGGTaGAAGGAACCAAGTCTGAATGAAACATCTTTCAGTTCTTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: MRSLMTSAEFETLSR*KEPSLNETSFSSFS Trigger: TGAGAAAGAACTGAAAGATGTTTCATTCAGACTTGGTTCCTTCAACCTAGACAAAGTTTCAAACTCAGCTGAAGTCATAAGAGATCTCAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022115.14 ENSMUST00000159199.8 |
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