Pregenerated sensors for XRCC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028933Ensembl transcript IDs: ENSMUST00000030773.12, ENSMUST00000134972.3
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCCTACCTTCTCTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTaGTGGCGCACATCTTTAATCTCAGCACTTGGGAGGCAGAGGCAG | + |
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Preference number: 1 (lower is better) Translates to: LLPSLLKDCPTQAGR*WRTSLISALGRQRQ Trigger: CTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAGAGAAGGTAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 90 bp | TCACGGAGAGCCACCTGTCAGCACACCCAGCTCATTCCAGTTTCCTaGGGGAGGCAGATGAGCTGGTGGCCCTGTGTGTCTTCCTTTGAT | + |
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Preference number: 1 (lower is better) Translates to: SRRATCQHTQLIPVS*GRQMSWWPCVSSFD Trigger: ATCAAAGGAAGACACACAGGGCCACCAGCTCATCTGCCTCCCTCAGGAAACTGGAATGAGCTGGGTGTGCTGACAGGTGGCTCTCCGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 90 bp | CCTGTCAGCACACCCAGCTCATTCCAGTTTCCTGAGGGAGGCAGATaGGCTGGTGGCCCTGTGTGTCTTCCTTTGATTAGAGTAACAGCT | + |
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Preference number: 1 (lower is better) Translates to: PVSTPSSFQFPEGGR*AGGPVCLPLIRVTA Trigger: AGCTGTTACTCTAATCAAAGGAAGACACACAGGGCCACCAGCTCATCTGCCTCCCTCAGGAAACTGGAATGAGCTGGGTGTGCTGACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 90 bp | GTTGTAGTTCCACTAACGTCTGCGGAAGCTCTGCGCTGCTCTCAATaGGGACTGCACCATTTCCCTGTCTTAGTAGAGATGTGTGACAGC | + |
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Preference number: 1 (lower is better) Translates to: VVVPLTSAEALRCSQ*GLHHFPVLVEMCDS Trigger: GCTGTCACACATCTCTACTAAGACAGGGAAATGGTGCAGTCCTCATTGAGAGCAGCGCAGAGCTTCCGCAGACGTTAGTGGAACTACAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134972.3 |
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| 3UTR GCA 90 bp | TTGACCTCCTCAGCTGTCAATGCTGAGATTACAGGTGACAGCCACTaGACTCTGCTTATCCCTCCAGTCGCTGATGGACAATTGTTTGCT | + |
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Preference number: 1 (lower is better) Translates to: LTSSAVNAEITGDSH*TLLIPPVADGQLFA Trigger: AGCAAACAATTGTCCATCAGCGACTGGAGGGATAAGCAGAGTGCAGTGGCTGTCACCTGTAATCTCAGCATTGACAGCTGAGGAGGTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134972.3 |
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| 3UTR TCA 90 bp | CCTTCTTCCTACAGGTACTCTGTGCCGGCTAGTTTTATGTCAGCTTaGCACAAACTAGAGTCACCAGAGAGGAGGGAGCTTCAGTTGAGA | + |
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Preference number: 1 (lower is better) Translates to: PSSYRYSVPASFMSA*HKLESPERRELQLR Trigger: TCTCAACTGAAGCTCCCTCCTCTCTGGTGACTCTAGTTTGTGTCAAGCTGACATAAAACTAGCCGGCACAGAGTACCTGTAGGAAGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR GCA 90 bp | CATTGTTTACCTGGCTACCTCAGAGGCAGAAATGTGATGAAGACTTaGCTGAACTATAGGACATCCTTGGGACAAGGGGAGCAGGTAGAA | + |
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Preference number: 1 (lower is better) Translates to: HCLPGYLRGRNVMKT*LNYRTSLGQGEQVE Trigger: TTCTACCTGCTCCCCTTGTCCCAAGGATGTCCTATAGTTCAGGCAAGTCTTCATCACATTTCTGCCTCTGAGGTAGCCAGGTAAACAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 90 bp | ATTACAGAAAACCACAGAGATCAAGATGAAGGGAACAAGCGAGCATaGGATGCCCGGCCCATCATCTGTCTACAGTACATCCTGCATCAA | + |
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Preference number: 1 (lower is better) Translates to: ITENHRDQDEGNKRA*DARPIICLQYILHQ Trigger: TTGATGCAGGATGTACTGTAGACAGATGATGGGCCGGGCATCTCATGCTCGCTTGTTCCCTTCATCTTGATCTCTGTGGTTTTCTGTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 90 bp | TCTCTTTGCCACAGAAATCATTACAGAAAACCACAGAGATCAAGATaGAGGGAACAAGCGAGCATGAGATGCCCGGCCCATCATCTGTCT | + |
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Preference number: 1 (lower is better) Translates to: SLCHRNHYRKPQRSR*REQASMRCPAHHLS Trigger: AGACAGATGATGGGCCGGGCATCTCATGCTCGCTTGTTCCCTTCATCTTGATCTCTGTGGTTTTCTGTAATGATTTCTGTGGCAAAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CCA 90 bp | GCAACTTATCAGAATTCTCAGCTCCAAGGAGCAACATTGTTTACCTaGCTACCTCAGAGGCAGAAATGTGATGAAGACTTGCCTGAACTA | + |
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Preference number: 1 (lower is better) Translates to: ATYQNSQLQGATLFT*LPQRQKCDEDLPEL Trigger: TAGTTCAGGCAAGTCTTCATCACATTTCTGCCTCTGAGGTAGCCAGGTAAACAATGTTGCTCCTTGGAGCTGAGAATTCTGATAAGTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 90 bp | ATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCCTaGCTTCCTTCAAATATGGACTACAATATACAAGAGAAGTGTAAA | + |
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Preference number: 1 (lower is better) Translates to: IDTCLKVPALPKFLS*LPSNMDYNIQEKCK Trigger: TTTACACTTCTCTTGTATATTGTAGTCCATATTTGAAGGAAGTCAGGACAGGAACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR CCA 90 bp | CCAGCTCAGCCCGCAGGCAGGCCAGCAGGCTCTAGGCACAGAACACAGCCTCAGGGGAGGCAGATGAGCTaGTGGCCCTGTGTGTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: PAQPAGRPAGSRHRTQPQGRQMS*WPCVSS Trigger: GGAAGACACACAGGGCCACCAGCTCATCTGCCTCCC...CTGAGGCTGTGTTCTGTGCCTAGAGCCTGCTGGCCTGCCTGCGGGCTGAGCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR TCA 90 bp | CCAGCTCAGCCCGCAGGCAGGCCAGCAGGCTCTAGGCACAGAACACAGCCTCAGCTCATTCCAGTTTCCTaGGGGAGGCAGATGAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: PAQPAGRPAGSRHRTQPQLIPVS*GRQMSW Trigger: CCAGCTCATCTGCCTCCCTCAGGAAACTGGAATGAG...CTGAGGCTGTGTTCTGTGCCTAGAGCCTGCTGGCCTGCCTGCGGGCTGAGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CAA 90 bp | AATCGTGGAGCAAACCAGGAAGCAGCACCCTCCATGGACTTTGTATaGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: NRGANQEAAPSMDFV*TPASKFLPFLSSCP Trigger: AGGACAGGAACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAAGTCCATGGAGGGTGCTGCTTCCTGGTTTGCTCCACGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR TCA 90 bp | GTCTCATCTATTTACCTAGCTATCTGTTTCCTGAGTAGCTCTTTGAAGCAGGACCCTGAGGGAGGCAGATaGGCTGGTGGCCCTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: VSSIYLAICFLSSSLKQDPEGGR*AGGPVC Trigger: ACACACAGGGCCACCAGCTCATCTGCCTCCCTCAGG...GTCCTGCTTCAAAGAGCTACTCAGGAAACAGATAGCTAGGTAAATAGATGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR GCA 90 bp | CCCTCCATGGACTTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTAGAGTAACAGCTCTGTaGACTCTCTCCAGCCACAGC | + |
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Preference number: 2 (lower is better) Translates to: PSMDFVLTPASKFLPFLSRVTAL*TLSSHS Trigger: GCTGTGGCTGGAGAGAGTGCACAGAGCTGTTACTCT...ACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAAGTCCATGGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR CCA 90 bp | CCCTCCATGGACTTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTAGGCAGATGAGCTGGTaGCCCTGTGTGTCTTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: PSMDFVLTPASKFLPFLSRQMSW*PCVSSF Trigger: AAAGGAAGACACACAGGGCCACCAGCTCATCTGCCT...ACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAAGTCCATGGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR GCA 90 bp | TCTAGGCACAGAACACAGCCTCAGAAGCCCTGGGGTAAATACAAGCAGGCCCAGAATGTGATGAAGACTTaGCTGAACTATAGGACATCC | + |
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Preference number: 2 (lower is better) Translates to: SRHRTQPQKPWGKYKQAQNVMKT*LNYRTS Trigger: GGATGTCCTATAGTTCAGGCAAGTCTTCATCACATT...CTGGGCCTGCTTGTATTTACCCCAGGGCTTCTGAGGCTGTGTTCTGTGCCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR TCA 90 bp | TTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCCTGACTCATTTCCCTGTGTGTaGAAAATTACACAGAACCCC | + |
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Preference number: 2 (lower is better) Translates to: FVLTPASKFLPFLSSCPDSFPCV*KITQNP Trigger: GGGGTTCTGTGTAATTTTTCACACACAGGGAAATGA...GTCAGGACAGGAACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR GCA 90 bp | GAACTCACATGTGGGCCTTTCCCTGGGTCAGAAGATGTAAAGGGATTTTCTAAAGTCTTTTGCTCACAGTaGTTGGTCATGACAACAGTA | + |
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Preference number: 2 (lower is better) Translates to: ELTCGPFPGSEDVKGFSKVFCSQ*LVMTTV Trigger: TACTGTTGTCATGACCAAGCACTGTGAGCAAAAGAC...TTTAGAAAATCCCTTTACATCTTCTGACCCAGGGAAAGGCCCACATGTGAGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CAA 90 bp | CAAAGATTAAGTATAGCTCTCATTCCTCAACAAAGAAATGTCTCTTaGCCACAGAAATCATTACAGAAAACCACAGAGATCAAGATGAAG | + |
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Preference number: 2 (lower is better) Translates to: QRLSIALIPQQRNVS*PQKSLQKTTEIKMK Trigger: CTTCATCTTGATCTCTGTGGTTTTCTGTAATGATTTCTGTGGCAAAGAGACATTTCTTTGTTGAGGAATGAGAGCTATACTTAATCTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR CAA 90 bp | CCAGCTCAGCCCGCAGGCAGGCCAGCAGGCTCTAGGCACAGAACACAGCCTCAGAGGAGGGAGCTTCAGTaGAGAAGATGTCTCCATAAG | + |
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Preference number: 3 (lower is better) Translates to: PAQPAGRPAGSRHRTQPQRRELQ*RRCLHK Trigger: CTTATGGAGACATCTTCTCAACTGAAGCTCCCTCCT...CTGAGGCTGTGTTCTGTGCCTAGAGCCTGCTGGCCTGCCTGCGGGCTGAGCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CCA 72 bp | TCTCTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTaGTGGCGCACATCTTTAATCTCAGCACTTGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: SLLKDCPTQAGR*WRTSLISALGR Trigger: CCTCCCAAGTGCTGAGATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR GCA 72 bp | GAGATGCCCGGCCCATCATCTGTCTACAGTACATCCTaGATCAAGGCTCAGGGCTGTAGCATCTCAGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: EMPGPSSVYSTS*IKAQGCSISEG Trigger: CCCTTCTGAGATGCTACAGCCCTGAGCCTTGATGCAGGATGTACTGTAGACAGATGATGGGCCGGGCATCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR CAA 90 bp | CTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTGGTGGCGCACATCTTTAATCCTCCAAGGAGCAACATaGTTTACCTGGCTACCTCAG | + |
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Preference number: 3 (lower is better) Translates to: LLKDCPTQAGRWWRTSLILQGAT*FTWLPQ Trigger: CTGAGGTAGCCAGGTAAACAATGTTGCTCCTTGGAG...GATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 72 bp | ACACCCAGCTCATTCCAGTTTCCTGAGGGAGGCAGATaGGCTGGTGGCCCTGTGTGTCTTCCTTTGATTAGA | + |
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Preference number: 3 (lower is better) Translates to: TPSSFQFPEGGR*AGGPVCLPLIR Trigger: TCTAATCAAAGGAAGACACACAGGGCCACCAGCTCATCTGCCTCCCTCAGGAAACTGGAATGAGCTGGGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR GCA 72 bp | GGAAGCAGCACCCTCCATGGACTTTGTATTGACACCTaGCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: GSSTLHGLCIDT*LKVPALPKFLS Trigger: GGACAGGAACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAAGTCCATGGAGGGTGCTGCTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 72 bp | CTATCCTGGAATTCACTATCTAGATCAGACAAGCTTTaGGCTCACGGAGAGCCACCTGTCAGCACACCCAGC | + |
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Preference number: 3 (lower is better) Translates to: LSWNSLSRSDKL*AHGEPPVSTPS Trigger: GCTGGGTGTGCTGACAGGTGGCTCTCCGTGAGCTCAAAGCTTGTCTGATCTAGATAGTGAATTCCAGGATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR GCA 72 bp | CCTGGCTACCTCAGAGGCAGAAATGTGATGAAGACTTaGCTGAACTATAGGACATCCTTGGGACAAGGGGAG | + |
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Preference number: 3 (lower is better) Translates to: PGYLRGRNVMKT*LNYRTSLGQGE Trigger: CTCCCCTTGTCCCAAGGATGTCCTATAGTTCAGGCAAGTCTTCATCACATTTCTGCCTCTGAGGTAGCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR GCA 72 bp | TCAGCTGTCAATGCTGAGATTACAGGTGACAGCCACTaGACTCTGCTTATCCCTCCAGTCGCTGATGGACAA | + |
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Preference number: 3 (lower is better) Translates to: SAVNAEITGDSH*TLLIPPVADGQ Trigger: TTGTCCATCAGCGACTGGAGGGATAAGCAGAGTGCAGTGGCTGTCACCTGTAATCTCAGCATTGACAGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134972.3 |
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| 3UTR-3UTR CAA 90 bp | TTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCCTGACCTGACCTTCCACACCTaGAAGGGGACAGAACAGCTT | + |
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Preference number: 3 (lower is better) Translates to: FVLTPASKFLPFLSSCPDLTFHT*KGTEQL Trigger: AAGCTGTTCTGTCCCCTTCAAGGTGTGGAAGGTCAG...GTCAGGACAGGAACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 72 bp | AGCTTCAAGACAAGCTCGGTGGAGTTTAGCATGTTCTaGCTGACCTTCCACACCTTGAAGGGGACAGAACAG | + |
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Preference number: 3 (lower is better) Translates to: SFKTSSVEFSMF*LTFHTLKGTEQ Trigger: CTGTTCTGTCCCCTTCAAGGTGTGGAAGGTCAGTCAGAACATGCTAAACTCCACCGAGCTTGTCTTGAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 72 bp | AACCACAGAGATCAAGATGAAGGGAACAAGCGAGCATaGGATGCCCGGCCCATCATCTGTCTACAGTACATC | + |
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Preference number: 3 (lower is better) Translates to: NHRDQDEGNKRA*DARPIICLQYI Trigger: GATGTACTGTAGACAGATGATGGGCCGGGCATCTCATGCTCGCTTGTTCCCTTCATCTTGATCTCTGTGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR CAA 90 bp | CCCTCCATGGACTTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTCCTGTGTGTCTTCCTTaGATTAGAGTAACAGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: PSMDFVLTPASKFLPFLSPVCLP*IRVTAL Trigger: CAGAGCTGTTACTCTAATCAAAGGAAGACACACAGG...ACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAAGTCCATGGAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR GCA 72 bp | CAAACCCTTTCCTCTCCAACAGTCTTTTGCTCACAGTaGTTGGTCATGACAACAGTAATCTTCACTAGGACA | + |
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Preference number: 3 (lower is better) Translates to: QTLSSPTVFCSQ*LVMTTVIFTRT Trigger: TGTCCTAGTGAAGATTACTGTTGTCATGACCAAGCACTGTGAGCAAAAGACTGTTGGAGAGGAAAGGGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 72 bp | TGCCTCAAAGTTCCTGCCCTTCCTAAGTTCCTGTCCTaGCTTCCTTCAAATATGGACTACAATATACAAGAG | + |
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Preference number: 3 (lower is better) Translates to: CLKVPALPKFLS*LPSNMDYNIQE Trigger: CTCTTGTATATTGTAGTCCATATTTGAAGGAAGTCAGGACAGGAACTTAGGAAGGGCAGGAACTTTGAGGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 72 bp | GAACCCTTCCTAAAGTATGCAGAAAGTGACCTAGTCTaGAATGTGTATCATGGTTTGAGCTTCAAGACAAGC | + |
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Preference number: 3 (lower is better) Translates to: EPFLKYAESDLV*NVYHGLSFKTS Trigger: GCTTGTCTTGAAGCTCAAACCATGATACACATTTCAGACTAGGTCACTTTCTGCATACTTTAGGAAGGGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR-3UTR CAA 90 bp | CATCTTCAAGTGCAACTTATCAGAATTCTCAGCTCCAAGGAGCAACATTGTTTATTCCTGAGTAGCTCTTaGAAGCAGGACCTCATTATG | + |
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Preference number: 3 (lower is better) Translates to: HLQVQLIRILSSKEQHCLFLSSS*KQDLIM Trigger: CATAATGAGGTCCTGCTTCAAAGAGCTACTCAGGAA...TAAACAATGTTGCTCCTTGGAGCTGAGAATTCTGATAAGTTGCACTTGAAGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR GCA 72 bp | ATAGTGAAGAACTTTAGTCTCAGCTTCTCAACAGGATaGTTTTTAACTCATAAACCTGTGGTAATGAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: IVKNFSLSFSTG*FLTHKPVVMSE Trigger: TTCACTCATTACCACAGGTTTATGAGTTAAAAAGCATCCTGTTGAGAAGCTGAGACTAAAGTTCTTCACTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR TCA 72 bp | TCAGATCTATCAATTAGTGAGATGAACATTCCAAAATaGACTTCCGAATTCGAAAGTGAGTACATCATTTCC | + |
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Preference number: 3 (lower is better) Translates to: SDLSISEMNIPK*TSEFESEYIIS Trigger: GGAAATGATGTACTCACTTTCGAATTCGGAAGTTCATTTTGGAATGTTCATCTCACTAATTGATAGATCTGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR TCA 90 bp | CCAGCTCAGCCCGCAGGCAGGCCAGCAGGCTCTAGGCACAGAACACAGCCTCAGCACTCTCTCCTCCACTaGCTCGGTCTATCCAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: PAQPAGRPAGSRHRTQPQHSLLH*LGLSSK Trigger: TTTACTGGATAGACCGAGTCAGTGGAGGAGAGAGTG...CTGAGGCTGTGTTCTGTGCCTAGAGCCTGCTGGCCTGCCTGCGGGCTGAGCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR TCA 90 bp | CTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTGGTGGCGCACATCTTTAATCGCACTTCTGCAGCGTTaGCTCCTGCAGGGCCACACT | + |
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Preference number: 4 (lower is better) Translates to: LLKDCPTQAGRWWRTSLIALLQR*LLQGHT Trigger: AGTGTGGCCCTGCAGGAGTCAACGCTGCAGAAGTGC...GATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR GCA 90 bp | CTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTGGTGGCGCACATCTTTAATCTCTCCATCGCATGGGTaGTTGGAGGAAGAAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LLKDCPTQAGRWWRTSLISPSHG*LEEEGP Trigger: CGGGCCTTCTTCCTCCAAGCACCCATGCGATGGAGA...GATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR CCA 90 bp | CTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTGGTGGCGCACATCTTTAATCCATCGCATGGGTGCTTaGAGGAAGAAGGCCCGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LLKDCPTQAGRWWRTSLIHRMGA*RKKARL Trigger: CAGACGGGCCTTCTTCCTCCAAGCACCCATGCGATG...GATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR TCA 90 bp | CTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTGGTGGCGCACATCTTTAATCATCACCGTGCACTGGTaGATCTTCATCAGCAAACAG | + |
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Preference number: 4 (lower is better) Translates to: LLKDCPTQAGRWWRTSLIITVHW*IFISKQ Trigger: CTGTTTGCTGATGAAGATTCACCAGTGCACGGTGAT...GATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR TCA 90 bp | CTAGAGTCACCAGAGAGGAGGGAGCTTCAGTTGAGAAGATGTCTCCATAAGATCCCAGGGAGTGCAGCGTaGGCAGTAACTGCATGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LESPERRELQLRRCLHKIPGSAA*AVTACC Trigger: GCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGG...GATCTTATGGAGACATCTTCTCAACTGAAGCTCCCTCCTCTCTGGTGACTCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR TCA 90 bp | AGCCACTGCACTCTGCTTATCCCTCCAGTCGCTGATGGACAATTGTTTGCTCCCTCATCCGTGCACTGGTaGATCTTCATCAGCAAACAG | + |
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Preference number: 4 (lower is better) Translates to: SHCTLLIPPVADGQLFAPSSVHW*IFISKQ Trigger: CTGTTTGCTGATGAAGATTCACCAGTGCACGGATGA...GGGAGCAAACAATTGTCCATCAGCGACTGGAGGGATAAGCAGAGTGCAGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134972.3 |
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| CDS-3UTR GCA 90 bp | CCCTCCATGGACTTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTAGCGTGAGCAGTAACTaGATGCTGCTGCTGCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: PSMDFVLTPASKFLPFLSSVSSN*MLLLQY Trigger: GTACTGCAGCAGCAGCATGCAGTTACTGCTCACGCT...ACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAAGTCCATGGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR GCA 90 bp | CACCCAGCTCATTCCAGTTTCCTGAGGGAGGCAGATGAGCTGGTGGCCCTGTGTTCAAAAATATCACCGTaGACTGGTGAATCTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: HPAHSSFLREADELVALCSKISP*TGESSS Trigger: TGATGAAGATTCACCAGTGCACGGTGATATTTTTGA...ACACAGGGCCACCAGCTCATCTGCCTCCCTCAGGAAACTGGAATGAGCTGGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CAA 72 bp | CTCTGCTTATCCCTCCAGTCGCTGATGGACAATTGTTaGCTCCCACCTCACAGCTGTTCACATCATATGGCA | + |
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Preference number: 4 (lower is better) Translates to: LCLSLQSLMDNC*LPPHSCSHHMA Trigger: TGCCATATGATGTGAACAGCTGTGAGGTGGGAGCAAACAATTGTCCATCAGCGACTGGAGGGATAAGCAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134972.3 |
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| CDS-3UTR TCA 90 bp | TCTAGGCACAGAACACAGCCTCAGAAGCCCTGGGGTAAATACAAGCAGGCCCAGGTTCCTTCTGGACCATaGAATTCAAAAATATCACCG | + |
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Preference number: 4 (lower is better) Translates to: SRHRTQPQKPWGKYKQAQVPSGP*NSKISP Trigger: CGGTGATATTTTTGAATTTCATGGTCCAGAAGGAAC...CTGGGCCTGCTTGTATTTACCCCAGGGCTTCTGAGGCTGTGTTCTGTGCCTAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CAA 72 bp | TGCACTCTGCTTATCCCTCCAGTCGCTGATGGACAATaGTTTGCTCCCACCTCACAGCTGTTCACATCATAT | + |
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Preference number: 4 (lower is better) Translates to: CTLLIPPVADGQ*FAPTSQLFTSY Trigger: ATATGATGTGAACAGCTGTGAGGTGGGAGCAAACAATTGTCCATCAGCGACTGGAGGGATAAGCAGAGTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134972.3 |
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| CDS-3UTR TCA 90 bp | CATCTTCAAGTGCAACTTATCAGAATTCTCAGCTCCAAGGAGCAACATTGTTTACGTCCCTGGAGAAGATaGCCCTGTGCTTCACGACCC | + |
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Preference number: 4 (lower is better) Translates to: HLQVQLIRILSSKEQHCLRPWRR*PCASRP Trigger: GGGTCGTGAAGCACAGGGTCATCTTCTCCAGGGACG...TAAACAATGTTGCTCCTTGGAGCTGAGAATTCTGATAAGTTGCACTTGAAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR GCA 90 bp | CTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTGGTGGCGCACATCTTTAATCAATAAGACTTCTATTTaGAGTCCACCCTCTGATTTT | + |
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Preference number: 4 (lower is better) Translates to: LLKDCPTQAGRWWRTSLINKTSI*SPPSDF Trigger: AAAATCAGAGGGTGGACTGCAAATAGAAGTCTTATT...GATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR TCA 90 bp | CATCTTCAAGTGCAACTTATCAGAATTCTCAGCTCCAAGGAGCAACATTGTTTAACAGGCTGTCCACAATaGGAAGGCAGAGAGAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: HLQVQLIRILSSKEQHCLTGCPQ*EGRERG Trigger: GCCCCTCTCTCTGCCTTCTCATTGTGGACAGCCTGT...TAAACAATGTTGCTCCTTGGAGCTGAGAATTCTGATAAGTTGCACTTGAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CAA 72 bp | ACCCTTTCCTCTCCAACAGTCTTTTGCTCACAGTGCTaGGTCATGACAACAGTAATCTTCACTAGGACACCT | + |
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Preference number: 4 (lower is better) Translates to: TLSSPTVFCSQC*VMTTVIFTRTP Trigger: AGGTGTCCTAGTGAAGATTACTGTTGTCATGACCAAGCACTGTGAGCAAAAGACTGTTGGAGAGGAAAGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR GCA 90 bp | GAACTCACATGTGGGCCTTTCCCTGGGTCAGAAGATGTAAAGGGATTTTCTAAATTCTGCATTAGACTCTaGGTTGTCGCAAAAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: ELTCGPFPGSEDVKGFSKFCIRL*VVAKSS Trigger: GCTGCTTTTTGCGACAACGCAGAGTCTAATGCAGAA...TTTAGAAAATCCCTTTACATCTTCTGACCCAGGGAAAGGCCCACATGTGAGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CAA 72 bp | GCAACTTATCAGAATTCTCAGCTCCAAGGAGCAACATaGTTTACCTGGCTACCTCAGAGGCAGAAATGTGAT | + |
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Preference number: 4 (lower is better) Translates to: ATYQNSQLQGAT*FTWLPQRQKCD Trigger: ATCACATTTCTGCCTCTGAGGTAGCCAGGTAAACAATGTTGCTCCTTGGAGCTGAGAATTCTGATAAGTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR TCA 90 bp | CATCTTCAAGTGCAACTTATCAGAATTCTCAGCTCCAAGGAGCAACATTGTTTATTGCAGTCCACCCTCTaGTTTTGGAAGTATACATCG | + |
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Preference number: 4 (lower is better) Translates to: HLQVQLIRILSSKEQHCLLQSTL*FWKYTS Trigger: CGATGTATACTTCCAAAATCAGAGGGTGGACTGCAA...TAAACAATGTTGCTCCTTGGAGCTGAGAATTCTGATAAGTTGCACTTGAAGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| 3UTR CAA 72 bp | AACCTTATAACAAACCCTTTCCTCTCCAACAGTCTTTaGCTCACAGTGCTTGGTCATGACAACAGTAATCTT | + |
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Preference number: 4 (lower is better) Translates to: NLITNPFLSNSL*LTVLGHDNSNL Trigger: AAGATTACTGTTGTCATGACCAAGCACTGTGAGCAAAAGACTGTTGGAGAGGAAAGGGTTTGTTATAAGGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS GCA 90 bp | AGAAGGCAGAGAGAGGGGCGACTGCAGAGCAGGGCTTCCAGGGAGTaGAGCGTGAGCAGTAACTGCATGCTGCTGCTGCAGTACGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RRQREGRLQSRASRE*SVSSNCMLLLQYAR Trigger: CCTGGCGTACTGCAGCAGCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGGAAGCCCTGCTCTGCAGTCGCCCCTCTCTCTGCCTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS TCA 90 bp | AGAGAGAGGGGCGACTGCAGAGCAGGGCTTCCAGGGAGTGCAGCGTaGGCAGTAACTGCATGCTGCTGCTGCAGTACGCCAGGAACAACC | + |
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Preference number: 5 (lower is better) Translates to: RERGDCRAGLPGSAA*AVTACCCCSTPGTT Trigger: GGTTGTTCCTGGCGTACTGCAGCAGCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGGAAGCCCTGCTCTGCAGTCGCCCCTCTCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS GCA 90 bp | CGACTGCAGAGCAGGGCTTCCAGGGAGTGCAGCGTGAGCAGTAACTaGATGCTGCTGCTGCAGTACGCCAGGAACAACCTGGCTAGGCAC | + |
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Preference number: 5 (lower is better) Translates to: RLQSRASRECSVSSN*MLLLQYARNNLARH Trigger: GTGCCTAGCCAGGTTGTTCCTGGCGTACTGCAGCAGCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGGAAGCCCTGCTCTGCAGTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS GCA 90 bp | GAAGAAGGCCCGTCTGCAGAGTCTGAGCCTTTCTGCATTAGACTCTaGGTTGTCGCAAAAAGCAGCAAGCGGTACTCAGTGACAAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: EEGPSAESEPFCIRL*VVAKSSKRYSVTSR Trigger: GCGGCTTGTCACTGAGTACCGCTTGCTGCTTTTTGCGACAACGCAGAGTCTAATGCAGAAAGGCTCAGACTCTGCAGACGGGCCTTCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS GCA 90 bp | GGGTGCTTGGAGGAAGAAGGCCCGTCTGCAGAGTCTGAGCCTTTCTaGATTAGACTCTGCGTTGTCGCAAAAAGCAGCAAGCGGTACTCA | + |
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Preference number: 5 (lower is better) Translates to: GCLEEEGPSAESEPF*IRLCVVAKSSKRYS Trigger: TGAGTACCGCTTGCTGCTTTTTGCGACAACGCAGAGTCTAATGCAGAAAGGCTCAGACTCTGCAGACGGGCCTTCTTCCTCCAAGCACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS CCA 90 bp | TGCAGAGATAGGCTCTGTAGCCCATGTCTCCATCGCATGGGTGCTTaGAGGAAGAAGGCCCGTCTGCAGAGTCTGAGCCTTTCTGCATTA | + |
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Preference number: 5 (lower is better) Translates to: CRDRLCSPCLHRMGA*RKKARLQSLSLSAL Trigger: TAATGCAGAAAGGCTCAGACTCTGCAGACGGGCCTTCTTCCTCCAAGCACCCATGCGATGGAGACATGGGCTACAGAGCCTATCTCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR CAA 90 bp | CTGCTTAAGGACTGTCCAACCCAGGCTGGGCGGTGGTGGCGCACATCTTTAATCGTCCACCCTCTGATTTaGGAAGTATACATCGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LLKDCPTQAGRWWRTSLIVHPLI*EVYIGL Trigger: CAGCCCGATGTATACTTCCAAAATCAGAGGGTGGAC...GATTAAAGATGTGCGCCACCACCGCCCAGCCTGGGTTGGACAGTCCTTAAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR CAA 90 bp | CCCTCCATGGACTTTGTATTGACACCTGCCTCAAAGTTCCTGCCCTTCCTAAGTCCATCGCATGGGTGCTaGGAGGAAGAAGGCCCGTCT | + |
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Preference number: 5 (lower is better) Translates to: PSMDFVLTPASKFLPFLSPSHGC*EEEGPS Trigger: AGACGGGCCTTCTTCCTCCAAGCACCCATGCGATGG...ACTTAGGAAGGGCAGGAACTTTGAGGCAGGTGTCAATACAAAGTCCATGGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS TCA 90 bp | GCATTAGACTCTGCGTTGTCGCAAAAAGCAGCAAGCGGTACTCAGTaGCAAGCCGCTCTAGGAGCTGAGAGCACTTCTGCAGCGTTGACT | + |
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Preference number: 5 (lower is better) Translates to: ALDSALSQKAASGTQ*QAALGAESTSAALT Trigger: AGTCAACGCTGCAGAAGTGCTCTCAGCTCCTAGAGCGGCTTGTCACTGAGTACCGCTTGCTGCTTTTTGCGACAACGCAGAGTCTAATGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR CAA 90 bp | CTAGAGTCACCAGAGAGGAGGGAGCTTCAGTTGAGAAGATGTCTCCATAAGATCAGCACTTCTGCAGCGTaGACTCCTGCAGGGCCACAC | + |
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Preference number: 5 (lower is better) Translates to: LESPERRELQLRRCLHKISTSAA*TPAGPH Trigger: GTGTGGCCCTGCAGGAGTCAACGCTGCAGAAGTGCT...GATCTTATGGAGACATCTTCTCAACTGAAGCTCCCTCCTCTCTGGTGACTCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS-3UTR CAA 90 bp | AGCCACTGCACTCTGCTTATCCCTCCAGTCGCTGATGGACAATTGTTTGCTCCCTCATCAGCAAACAGGTaGGGTTCTAGTTCTTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: SHCTLLIPPVADGQLFAPSSANR*GSSSFN Trigger: GTTGAAAGAACTAGAACCCAACCTGTTTGCTGATGA...GGGAGCAAACAATTGTCCATCAGCGACTGGAGGGATAAGCAGAGTGCAGTGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134972.3 |
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| CDS-3UTR CAA 90 bp | CATCTTCAAGTGCAACTTATCAGAATTCTCAGCTCCAAGGAGCAACATTGTTTATCATCAGCAAACAGGTaGGGTTCTAGTTCTTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: HLQVQLIRILSSKEQHCLSSANR*GSSSFN Trigger: GTTGAAAGAACTAGAACCCAACCTGTTTGCTGATGA...TAAACAATGTTGCTCCTTGGAGCTGAGAATTCTGATAAGTTGCACTTGAAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS TCA 72 bp | GGCGACTGCAGAGCAGGGCTTCCAGGGAGTGCAGCGTaGGCAGTAACTGCATGCTGCTGCTGCAGTACGCCA | + |
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Preference number: 6 (lower is better) Translates to: GDCRAGLPGSAA*AVTACCCCSTP Trigger: TGGCGTACTGCAGCAGCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGGAAGCCCTGCTCTGCAGTCGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS GCA 72 bp | AGAGAGGGGCGACTGCAGAGCAGGGCTTCCAGGGAGTaGAGCGTGAGCAGTAACTGCATGCTGCTGCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: REGRLQSRASRE*SVSSNCMLLLQ Trigger: CTGCAGCAGCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGGAAGCCCTGCTCTGCAGTCGCCCCTCTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS GCA 72 bp | AGCAGGGCTTCCAGGGAGTGCAGCGTGAGCAGTAACTaGATGCTGCTGCTGCAGTACGCCAGGAACAACCTG | + |
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Preference number: 6 (lower is better) Translates to: SRASRECSVSSN*MLLLQYARNNL Trigger: CAGGTTGTTCCTGGCGTACTGCAGCAGCAGCATGCAGTTACTGCTCACGCTGCACTCCCTGGAAGCCCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS CCA 72 bp | GCAGAGATAGGCTCTGTAGCCCATGTCTCCATCGCATaGGTGCTTGGAGGAAGAAGGCCCGTCTGCAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: AEIGSVAHVSIA*VLGGRRPVCRV Trigger: GACTCTGCAGACGGGCCTTCTTCCTCCAAGCACCCATGCGATGGAGACATGGGCTACAGAGCCTATCTCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS TCA 72 bp | TCTGCGTTGTCGCAAAAAGCAGCAAGCGGTACTCAGTaGCAAGCCGCTCTAGGAGCTGAGAGCACTTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SALSQKAASGTQ*QAALGAESTSA Trigger: TGCAGAAGTGCTCTCAGCTCCTAGAGCGGCTTGTCACTGAGTACCGCTTGCTGCTTTTTGCGACAACGCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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| CDS GCA 72 bp | CCGTCTGCAGAGTCTGAGCCTTTCTGCATTAGACTCTaGGTTGTCGCAAAAAGCAGCAAGCGGTACTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PSAESEPFCIRL*VVAKSSKRYSV Trigger: CACTGAGTACCGCTTGCTGCTTTTTGCGACAACGCAGAGTCTAATGCAGAAAGGCTCAGACTCTGCAGACGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030773.12 |
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