RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for XPO6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000131

Ensembl transcript IDs: ENSMUST00000009344.16, ENSMUST00000164741.2, ENSMUST00000165608.2, ENSMUST00000165660.2, ENSMUST00000166538.2, ENSMUST00000166540.8, ENSMUST00000166719.8, ENSMUST00000168189.8, ENSMUST00000168564.2, ENSMUST00000171861.8

Found 304 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGAGTGGTCAAGGCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTaGTGTAGGTGGTGGTGGCAGCAGGCACATCCCTGGGGCAGTGAG +
Preference number: 1 (lower is better)
Translates to: RVVKACHRLPWHRCR*CRWWWQQAHPWGSE
Trigger: CTCACTGCCCCAGGGATGTGCCTGCTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGCCTTGACCACTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR CCA 90 bp AGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTaGTCAAGGCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGT +
Preference number: 1 (lower is better)
Translates to: RAEAGHLLRAHQSRE*SRLVTDFRGTGAGG
Trigger: ACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR GCA 90 bp CTGAACTGGGGCTCATTCTCCATCTGCTCCTCAGCGATGCCCCTCTaGACGCTAGCGAGGACAGTGGACTTGAAGAAGTACCGCCAGTTG +
Preference number: 1 (lower is better)
Translates to: LNWGSFSICSSAMPL*TLARTVDLKKYRQL
Trigger: CAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCGCTAGCGTGCAGAGGGGCATCGCTGAGGAGCAGATGGAGAATGAGCCCCAGTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 90 bp GCAGGCACTCCTAGAGCTTCACGGTGCCAGGGGGCAGGCTGTCATTaGAGAGTCGGTAGTAACGGAGATCATTTACCAGCCTGTGCACAT +
Preference number: 1 (lower is better)
Translates to: AGTPRASRCQGAGCH*RVGSNGDHLPACAH
Trigger: ATGTGCACAGGCTGGTAAATGATCTCCGTTACTACCGACTCTGCAATGACAGCCTGCCCCCTGGCACCGTGAAGCTCTAGGAGTGCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000171861.8
3UTR CCA 90 bp ATCAGAAAGACAGGCCGCACGGTGGTGGCTAGTGAGACCAGTAGGTaGCACGCAGACAGCAGCAACTTGTCTTGGACCTTGGTGCTGATG +
Preference number: 1 (lower is better)
Translates to: IRKTGRTVVASETSR*HADSSNLSWTLVLM
Trigger: CATCAGCACCAAGGTCCAAGACAAGTTGCTGCTGTCTGCGTGCCACCTACTGGTCTCACTAGCCACCACCGTGCGGCCTGTCTTTCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR GCA 90 bp GTTAGACGCTGGGCAGAGGCATCAATGATGCTGTTGAACACCTTCTaGACTGCAGGGATACTGATCAGAAAGACAGGCCGCACGGTGGTG +
Preference number: 1 (lower is better)
Translates to: VRRWAEASMMLLNTF*TAGILIRKTGRTVV
Trigger: CACCACCGTGCGGCCTGTCTTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGCCTCTGCCCAGCGTCTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR TCA 90 bp TGCACGCTAGCGAGGACAGTGGACTTGAAGAAGTACCGCCAGTTGTaGTGGAGCGTTCGAAAGAGGAGCTCAAACAGCTCAGCCTTGACA +
Preference number: 1 (lower is better)
Translates to: CTLARTVDLKKYRQL*WSVRKRSSNSSALT
Trigger: TGTCAAGGCTGAGCTGTTTGAGCTCCTCTTTCGAACGCTCCATCACAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCGCTAGCGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR CCA 90 bp ATCTTCAGGAACTTCTCCACCACCCGGCAGCCAGTGCTGCCTTCATaGAGGATGCTCTCAGCCAACTGTTCTCTGGTAAACATGTTGAGG +
Preference number: 1 (lower is better)
Translates to: IFRNFSTTRQPVLPS*RMLSANCSLVNMLR
Trigger: CCTCAACATGTTTACCAGAGAACAGTTGGCTGAGAGCATCCTCCATGAAGGCAGCACTGGCTGCCGGGTGGTGGAGAAGTTCCTGAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR TCA 90 bp TCCCTCTGCCTGCTCCAAATGTGTAGAAACTCTACCAGTGTCAAATaGACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGAGAGGGCAGA +
Preference number: 1 (lower is better)
Translates to: SLCLLQMCRNSTSVK*TPKPAVLEAAGEGR
Trigger: TCTGCCCTCTCCTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTCTACACATTTGGAGCAGGCAGAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR GCA 90 bp GGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTaGTCCAAATGTGTAGAAACTCTACCAGTGTCAAATGAACTCCAA +
Preference number: 1 (lower is better)
Translates to: GLWVPPWHLAIGPSA*SKCVETLPVSNELQ
Trigger: TTGGAGTTCATTTGACACTGGTAGAGTTTCTACACATTTGGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR CCA 90 bp GAAAGTGCACGGCAAACCAACACCTGCGCCTTATCTGTTAGACGCTaGGCAGAGGCATCAATGATGCTGTTGAACACCTTCTGCACTGCA +
Preference number: 1 (lower is better)
Translates to: ESARQTNTCALSVRR*AEASMMLLNTFCTA
Trigger: TGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGCCTCTGCCCAGCGTCTAACAGATAAGGCGCAGGTGTTGGTTTGCCGTGCACTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR GCA 90 bp GCCAACTGTTCTCTGGTAAACATGTTGAGGAAAGTCTGTATGATCTaGTCTGTGAACGGCACGCCCATCTGTACTCGAAGGCCTCGGAAC +
Preference number: 1 (lower is better)
Translates to: ANCSLVNMLRKVCMI*SVNGTPICTRRPRN
Trigger: GTTCCGAGGCCTTCGAGTACAGATGGGCGTGCCGTTCACAGAGCAGATCATACAGACTTTCCTCAACATGTTTACCAGAGAACAGTTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 90 bp ACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTaGCCTCAGATCGATCATGTCGAACGCTCTCCGGCCAGAATACAC +
Preference number: 1 (lower is better)
Translates to: TFWVNDGRSCVELSK*PQIDHVERSPARIH
Trigger: GTGTATTCTGGCCGGAGAGCGTTCGACATGATCGATCTGAGGGCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000168564.2
3UTR CCA 90 bp GAACCAGGACCTGGAGCAGCACGTTCACGAACTGGAACAGCATGGTaGTCCGGAAGATCTTTTTGTGGTATAGTTTCTGCTTCGTGTTCA +
Preference number: 1 (lower is better)
Translates to: EPGPGAARSRTGTAW*SGRSFCGIVSASCS
Trigger: TGAACACGAAGCAGAAACTATACCACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCGTGAACGTGCTGCTCCAGGTCCTGGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR TCA 90 bp GTCGGTAGTAACGGAGATCATTTACCAGCCTGTGCACATTCTGGGTaGACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCCCTCAGA +
Preference number: 1 (lower is better)
Translates to: VGSNGDHLPACAHSG*TMVGPVLNFQSALR
Trigger: TCTGAGGGCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGTAAATGATCTCCGTTACTACCGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
3UTR CCA 90 bp TATGAACCAGGACCTGGAGCAGCACGTTCACGAACTGGAACAGCATaGTGGTCCGGAAGATCTTTTTGTGGTATAGTTTCTGCTTCGTGT +
Preference number: 1 (lower is better)
Translates to: YEPGPGAARSRTGTA*WSGRSFCGIVSASC
Trigger: ACACGAAGCAGAAACTATACCACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCGTGAACGTGCTGCTCCAGGTCCTGGTTCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 90 bp CAAAGAAGCCATCAAAGTCGACAGAAGCCATGTTGTAAATGGCAATaGCGATCTCCTCCTGCAGAAGGTCATGAGACTTATGAACCAGGA +
Preference number: 1 (lower is better)
Translates to: QRSHQSRQKPCCKWQ*RSPPAEGHETYEPG
Trigger: TCCTGGTTCATAAGTCTCATGACCTTCTGCAGGAGGAGATCGGCATTGCCATTTACAACATGGCTTCTGTCGACTTTGATGGCTTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR CCA 90 bp AGGCTGCAAAGAAGCCATCAAAGTCGACAGAAGCCATGTTGTAAATaGCAATGCCGATCTCCTCCTGCAGAAGGTCATGAGACTTATGAA +
Preference number: 1 (lower is better)
Translates to: RLQRSHQSRQKPCCK*QCRSPPAEGHETYE
Trigger: TTCATAAGTCTCATGACCTTCTGCAGGAGGAGATCGGCATTGCCATTTACAACATGGCTTCTGTCGACTTTGATGGCTTCTTTGCAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR GCA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGCTTCCGTGGCACAGGTaGAGGTGGTGTAGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKLPWHR*RWCRWW
Trigger: CCACCACCTACACCACCTGCACCTGTGCCACGGAAG...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCATGGTGTAGGTGGTGGTaGCAGCAGGCACATCCCTGG +
Preference number: 2 (lower is better)
Translates to: ERAEAGHLLRAHQSREWSWCRWW*QQAHPW
Trigger: CCAGGGATGTGCCTGCTGCCACCACCACCTACACCA...TGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp GAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGCTTCCGTGGCACAGGTaGAGGTGGTGTAGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: ETVPMSNFSWAGWARSGGLPWHR*RWCRWW
Trigger: CCACCACCTACACCACCTGCACCTGTGCCACGGAAG...CCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACTGGTGTAGGTGGTGGTaGCAGCAGGCACATCCCTGG +
Preference number: 2 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHWCRWW*QQAHPW
Trigger: CCAGGGATGTGCCTGCTGCCACCACCACCTACACCA...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGACTCTGGGTACCTCCCTaGCATCTGGCCATAGGTCCC +
Preference number: 2 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGLWVPP*HLAIGP
Trigger: GGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAG...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR TCA 90 bp TGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTGCTCCGGTCCTTGGCCATTTTaGCTCAGGACTGATACACAC +
Preference number: 2 (lower is better)
Translates to: WGLWVPPWHLAIGPSACSGPWPF*LRTDTH
Trigger: GTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACC...GGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACTGCAGGTGGTGTAGGTaGTGGTGGCAGCAGGCACAT +
Preference number: 2 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHCRWCR*WWQQAH
Trigger: ATGTGCCTGCTGCCACCACCACCTACACCACCTGCA...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGTGGCACAGGTGCAGGTaGTGTAGGTGGTGGTGGCAG +
Preference number: 2 (lower is better)
Translates to: DRNSSNVEFLLGWLGQERWHRCR*CRWWWQ
Trigger: CTGCCACCACCACCTACACCACCTGCACCTGTGCCA...CCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGCAAAACCTGCTGTGCTaGAGGCAGCAGGAGAGGGCA +
Preference number: 2 (lower is better)
Translates to: ETVPMSNFSWAGWARSGGQNLLC*RQQERA
Trigger: TGCCCTCTCCTGCTGCCTCCAGCACAGCAGGTTTTG...CCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp TCACGGTGCCAGGGGGCAGGCTGTCATTGCAGAGTCGGTAGTAACGGAGATCATTGCAGGTGGTGTAGGTaGTGGTGGCAGCAGGCACAT +
Preference number: 2 (lower is better)
Translates to: SRCQGAGCHCRVGSNGDHCRWCR*WWQQAH
Trigger: ATGTGCCTGCTGCCACCACCACCTACACCACCTGCA...ATGATCTCCGTTACTACCGACTCTGCAATGACAGCCTGCCCCCTGGCACCGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp TTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTaGGCCAGGAGCGGAGGGGAG +
Preference number: 2 (lower is better)
Translates to: FKAIGGAGGSTETVPMSNFSWAG*ARSGGE
Trigger: CTCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAA...ATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp AGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTTTCTCCTGGGCTGGCTaGGCCAGGAGCGGAGGGGAG +
Preference number: 2 (lower is better)
Translates to: RPLEGQEDRQKQFQCRISFSWAG*ARSGGE
Trigger: CTCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAA...AGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp GAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCACTTCCGTGGCACAGGTaGAGGTGGTGTAGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: EDRQKQFQCRISPGLAGPLPWHR*RWCRWW
Trigger: CCACCACCTACACCACCTGCACCTGTGCCACGGAAG...TGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp GTCGACAGAAGCCATGTTGTAAATGGCAATGCCGATCTCCTCCTGCAGAAGGTCCCACCCGGCAGCCAGTaGTGCCTTCATGGAGGATGC +
Preference number: 2 (lower is better)
Translates to: VDRSHVVNGNADLLLQKVPPGSQ*CLHGGC
Trigger: GCATCCTCCATGAAGGCAGCACTGGCTGCCGGGTGG...GACCTTCTGCAGGAGGAGATCGGCATTGCCATTTACAACATGGCTTCTGTCGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR CCA 90 bp TGCCAGGGGGCAGGCTGTCATTGCAGAGTCGGTAGTAACGGAGATCATTTACCATGGTGTAGGTGGTGGTaGCAGCAGGCACATCCCTGG +
Preference number: 2 (lower is better)
Translates to: CQGAGCHCRVGSNGDHLPWCRWW*QQAHPW
Trigger: CCAGGGATGTGCCTGCTGCCACCACCACCTACACCA...TGGTAAATGATCTCCGTTACTACCGACTCTGCAATGACAGCCTGCCCCCTGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGAGGTGGTGTAGGTGGTaGTGGCAGCAGGCACATCCC +
Preference number: 2 (lower is better)
Translates to: EGQEDRQKQFQCRISPGLRWCRW*WQQAHP
Trigger: GGGATGTGCCTGCTGCCACCACCACCTACACCACCT...CAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCATGGCACAGGTGCAGGTaGTGTAGGTGGTGGTGGCAG +
Preference number: 2 (lower is better)
Translates to: EDRQKQFQCRISPGLAGPWHRCR*CRWWWQ
Trigger: CTGCCACCACCACCTACACCACCTGCACCTGTGCCA...TGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp ATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGCCTGTGCACATTCTaGGTGAACGATGGTAGGTCC +
Preference number: 2 (lower is better)
Translates to: ICMNHAVGSLGTSLASGHSLCTF*VNDGRS
Trigger: GGACCTACCATCGTTCACCCAGAATGTGCACAGGCT...ATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp TGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTGCTCCGAACGTTTTTCTGATTaGCATCCACACCATCACAGC +
Preference number: 2 (lower is better)
Translates to: WGLWVPPWHLAIGPSACSERFSD*HPHHHS
Trigger: GCTGTGATGGTGTGGATGCCAATCAGAAAAACGTTC...GGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171861.8
3UTR-3UTR TCA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGAGGTCCTTGGCCATTTTaGCTCAGGACTGATACACAC +
Preference number: 2 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGGPWPF*LRTDTH
Trigger: GTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACC...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR TCA 90 bp ATGAGACTTATGAACCAGGACCTGGAGCAGCACGTTCACGAACTGGAACAGCATTGGGGAGGAAGGGCTTaGACACCTGGCCAGGCTCCT +
Preference number: 2 (lower is better)
Translates to: MRLMNQDLEQHVHELEQHWGGRA*TPGQAP
Trigger: AGGAGCCTGGCCAGGTGTTCAAGCCCTTCCTCCCCA...ATGCTGTTCCAGTTCGTGAACGTGCTGCTCCAGGTCCTGGTTCATAAGTCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR CCA 90 bp GTGGCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGTGGCACAGGTGCAGGTaGTGTAGGTGGTGGTGGCAG +
Preference number: 2 (lower is better)
Translates to: VALLSEVLGHFDSGLIHTWHRCR*CRWWWQ
Trigger: CTGCCACCACCACCTACACCACCTGCACCTGTGCCA...CGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp AGAGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTGGCACAGGTGCAGGTaGTGTAGGTGGTGGTGGCAG +
Preference number: 2 (lower is better)
Translates to: RDFKAIGGAGGSTETVPMWHRCR*CRWWWQ
Trigger: CTGCCACCACCACCTACACCACCTGCACCTGTGCCA...CATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACCACCAATCCAGAGAGTaGTCAAGGCTTGTCACAGAC +
Preference number: 2 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHHQSRE*SRLVTD
Trigger: GTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTG...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp CTAGAGCTTCACGGTGCCAGGGGGCAGGCTGTCATTGCAGAGTCGGTAGTAACGCACCAATCCAGAGAGTaGTCAAGGCTTGTCACAGAC +
Preference number: 2 (lower is better)
Translates to: LELHGARGQAVIAESVVTHQSRE*SRLVTD
Trigger: GTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTG...CGTTACTACCGACTCTGCAATGACAGCCTGCCCCCTGGCACCGTGAAGCTCTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000171861.8
3UTR-3UTR TCA 90 bp CACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCGGTCCCGATCCATCTTaGAATTCCGCCCCAGAACGT +
Preference number: 2 (lower is better)
Translates to: HLLRAHQSREWSRLVTDFGPDPS*NSAPER
Trigger: ACGTTCTGGGGCGGAATTTCAAGATGGATCGGGACC...GAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp AAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCCTTCCGTGGCACAGGTaGAGGTGGTGTAGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: KAIGGAGGSTETVPMSNFLPWHR*RWCRWW
Trigger: CCACCACCTACACCACCTGCACCTGTGCCACGGAAG...GAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp CTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGCATAGGTCCCTCTGCCTaGTCCAAATGTGTAGAAACT +
Preference number: 2 (lower is better)
Translates to: LVTDFRGTGAGGVGGGGSIGPSA*SKCVET
Trigger: AGTTTCTACACATTTGGAGCAGGCAGAGGGACCTAT...GCTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp ATGATGGCACTGAACTGGGGCTCATTCTCCATCTGCTCCTCAGCGATGCCCCTCAAAGTCTGTATGATCTaGTCTGTGAACGGCACGCCC +
Preference number: 2 (lower is better)
Translates to: MMALNWGSFSICSSAMPLKVCMI*SVNGTP
Trigger: GGGCGTGCCGTTCACAGAGCAGATCATACAGACTTT...GAGGGGCATCGCTGAGGAGCAGATGGAGAATGAGCCCCAGTTCAGTGCCATCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR CCA 90 bp TTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTGGTGTAGGTGGTGGTaGCAGCAGGCACATCCCTGG +
Preference number: 2 (lower is better)
Translates to: FKAIGGAGGSTETVPMSNWCRWW*QQAHPW
Trigger: CCAGGGATGTGCCTGCTGCCACCACCACCTACACCA...ATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp AGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCTGCAGGTGGTGTAGGTaGTGGTGGCAGCAGGCACAT +
Preference number: 2 (lower is better)
Translates to: RLQGHWRGRRIDRNSSNVCRWCR*WWQQAH
Trigger: ATGTGCCTGCTGCCACCACCACCTACACCACCTGCA...GACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp TTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGTGCAGGTGGTGTAGGTaGTGGTGGCAGCAGGCACAT +
Preference number: 2 (lower is better)
Translates to: LEGQEDRQKQFQCRISPGCRWCR*WWQQAH
Trigger: ATGTGCCTGCTGCCACCACCACCTACACCACCTGCA...CCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTTGTCACAGACTTCCGTaGCACAGGTGCAGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: GGAGGSTETVPMSNFSWACHRLP*HRCRWC
Trigger: ACACCACCTGCACCTGTGCCACGGAAGTCTGTGACA...AGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp AGAGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGCAAAACCTGCTGTGCTaGAGGCAGCAGGAGAGGGCA +
Preference number: 2 (lower is better)
Translates to: RDFKAIGGAGGSTETVPMQNLLC*RQQERA
Trigger: TGCCCTCTCCTGCTGCCTCCAGCACAGCAGGTTTTG...CATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp AAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCCTCTGGGTACCTCCCTaGCATCTGGCCATAGGTCCC +
Preference number: 2 (lower is better)
Translates to: KAIGGAGGSTETVPMSNFLWVPP*HLAIGP
Trigger: GGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAG...GAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR TCA 90 bp ACTTATGAACCAGGACCTGGAGCAGCACGTTCACGAACTGGAACAGCATGGTGGCGAGGACAGTGGACTTaGAGAAGTACCGCCAGTTGT +
Preference number: 2 (lower is better)
Translates to: TYEPGPGAARSRTGTAWWRGQWT*RSTASC
Trigger: ACAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCG...CCACCATGCTGTTCCAGTTCGTGAACGTGCTGCTCCAGGTCCTGGTTCATAAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR CCA 90 bp GCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGTCACAGACTTCCGTaGCACAGGTGCAGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: AIGGAGGSTETVPMSNFSCHRLP*HRCRWC
Trigger: ACACCACCTGCACCTGTGCCACGGAAGTCTGTGACA...GGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp TTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGTGTCACAGACTTCCGTaGCACAGGTGCAGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: LEGQEDRQKQFQCRISPGCHRLP*HRCRWC
Trigger: ACACCACCTGCACCTGTGCCACGGAAGTCTGTGACA...CCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp GCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGATCGGGGCAGGCTGTCATTaGAGAGTCGGTAGTAACGGA +
Preference number: 2 (lower is better)
Translates to: ALLSEVLGHFDSGLIHTIGAGCH*RVGSNG
Trigger: TCCGTTACTACCGACTCTGCAATGACAGCCTGCCCC...GATCGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000171861.8
3UTR-3UTR CCA 90 bp GGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTCACCAATCCAGAGAGTaGTCAAGGCTTGTCACAGAC +
Preference number: 2 (lower is better)
Translates to: GGAGGSTETVPMSNFSWAHQSRE*SRLVTD
Trigger: GTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTG...AGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR CAA 90 bp TGCGCCTTATCTGTTAGACGCTGGGCAGAGGCATCAATGATGCTGTaGAACACCTTCTGCACTGCAGGGATACTGATCAGAAAGACAGGC +
Preference number: 2 (lower is better)
Translates to: CALSVRRWAEASMML*NTFCTAGILIRKTG
Trigger: GCCTGTCTTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGCCTCTGCCCAGCGTCTAACAGATAAGGCGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR-3UTR TCA 90 bp TTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGGGTCCTTGGCCATTTTaGCTCAGGACTGATACACAC +
Preference number: 2 (lower is better)
Translates to: LEGQEDRQKQFQCRISPGGPWPF*LRTDTH
Trigger: GTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACC...CCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR TCA 90 bp CATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGTGTGCACATTCTGGGTaGACGATGGTAGGTCCTGTG +
Preference number: 2 (lower is better)
Translates to: HWRGRRIDRNSSNVEFLLCAHSG*TMVGPV
Trigger: CACAGGACCTACCATCGTTCACCCAGAATGTGCACA...CAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
3UTR-3UTR TCA 90 bp GAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGCCCAGAACGTTTTTCTaGTTGGCATCCACACCATCA +
Preference number: 2 (lower is better)
Translates to: EGQEDRQKQFQCRISPGLPRTFF*LASTPS
Trigger: TGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGG...CAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp CAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTGATACACACGATCTaGATGAACCACGCTGTGGGG +
Preference number: 2 (lower is better)
Translates to: QGHWRGRRIDRNSSNVEFLIHTI*MNHAVG
Trigger: CCCCACAGCGTGGTTCATGCAGATCGTGTGTATCAG...AAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR GCA 90 bp CAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGGTTGAACTTTCAAAGTaGCCTCAGATCGATCATGTC +
Preference number: 2 (lower is better)
Translates to: QATCSGHTNPESGQGLSQVELSK*PQIDHV
Trigger: GACATGATCGATCTGAGGGCACTTTGAAAGTTCAAC...CTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
3UTR-3UTR CCA 90 bp AGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCCACCAATCCAGAGAGTaGTCAAGGCTTGTCACAGAC +
Preference number: 2 (lower is better)
Translates to: RLQGHWRGRRIDRNSSNVHQSRE*SRLVTD
Trigger: GTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTG...GACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR TCA 90 bp AACTGGAACAGCATGGTGGTCCGGAAGATCTTTTTGTGGTATAGTTTCTGCTTCACGGGCGCTCAGCAATaGTGGGGTACACTTGCTCCA +
Preference number: 2 (lower is better)
Translates to: NWNSMVVRKIFLWYSFCFTGAQQ*WGTLAP
Trigger: TGGAGCAAGTGTACCCCATCATTGCTGAGCGCCCGT...GAAGCAGAAACTATACCACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR GCA 90 bp ATGAGACTTATGAACCAGGACCTGGAGCAGCACGTTCACGAACTGGAACAGCATATGATGGGGTACACTTaGTCCATGCACAGCGCGATA +
Preference number: 2 (lower is better)
Translates to: MRLMNQDLEQHVHELEQHMMGYT*SMHSAI
Trigger: TATCGCGCTGTGCATGGAGCAAGTGTACCCCATCAT...ATGCTGTTCCAGTTCGTGAACGTGCTGCTCCAGGTCCTGGTTCATAAGTCTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR CCA 90 bp GTCGACAGAAGCCATGTTGTAAATGGCAATGCCGATCTCCTCCTGCAGAAGGTCACTGGAACAGCATGGTaGTCCGGAAGATCTTTTTGT +
Preference number: 2 (lower is better)
Translates to: VDRSHVVNGNADLLLQKVTGTAW*SGRSFC
Trigger: ACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGT...GACCTTCTGCAGGAGGAGATCGGCATTGCCATTTACAACATGGCTTCTGTCGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR-3UTR CAA 90 bp GCACTGAACTGGGGCTCATTCTCCATCTGCTCCTCAGCGATGCCCCTCTGCACGCTGGGGAGGAAGGGCTaGAACACCTGGCCAGGCTCC +
Preference number: 3 (lower is better)
Translates to: ALNWGSFSICSSAMPLCTLGRKG*NTWPGS
Trigger: GGAGCCTGGCCAGGTGTTCAAGCCCTTCCTCCCCAG...CGTGCAGAGGGGCATCGCTGAGGAGCAGATGGAGAATGAGCCCCAGTTCAGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 72 bp TGCATGATGGCACTGAACTGGGGCTCATTCTCCATCTaGTCCTCAGCGATGCCCCTCTGCACGCTAGCGAGG +
Preference number: 3 (lower is better)
Translates to: CMMALNWGSFSI*SSAMPLCTLAR
Trigger: CCTCGCTAGCGTGCAGAGGGGCATCGCTGAGGAGCAGATGGAGAATGAGCCCCAGTTCAGTGCCATCATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR CCA 72 bp ACAGGCCGCACGGTGGTGGCTAGTGAGACCAGTAGGTaGCACGCAGACAGCAGCAACTTGTCTTGGACCTTG +
Preference number: 3 (lower is better)
Translates to: TGRTVVASETSR*HADSSNLSWTL
Trigger: CAAGGTCCAAGACAAGTTGCTGCTGTCTGCGTGCCACCTACTGGTCTCACTAGCCACCACCGTGCGGCCTGT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR-3UTR CAA 90 bp CTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGCGAGAGTGGTCAAGGCTaGTCACAGACTTCCGTGGCA +
Preference number: 3 (lower is better)
Translates to: LVTDFRGTGAGGVGGGGSESGQG*SQTSVA
Trigger: TGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTC...GCTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CAA 90 bp GAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGAGGTCCCGATCCATCTaGAAATTCCGCCCCAGAACG +
Preference number: 3 (lower is better)
Translates to: ETVPMSNFSWAGWARSGGRSRSI*KFRPRT
Trigger: CGTTCTGGGGCGGAATTTCAAGATGGATCGGGACCT...CCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171861.8
3UTR CCA 72 bp GCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTaGTCAAGGCTTGTCACAGACTTCCGTGGCACAGGT +
Preference number: 3 (lower is better)
Translates to: AGHLLRAHQSRE*SRLVTDFRGTG
Trigger: ACCTGTGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CAA 90 bp CAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGGAGAGTGGTCAAGGCTaGTCACAGACTTCCGTGGCA +
Preference number: 3 (lower is better)
Translates to: QATCSGHTNPESGQGLSQESGQG*SQTSVA
Trigger: TGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTC...CTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CAA 90 bp GCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCGCAGAGGCAGGCCACTaGCTCAGGGCACACCAATCC +
Preference number: 3 (lower is better)
Translates to: AIGGAGGSTETVPMSNFSAEAGH*LRAHQS
Trigger: GGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGC...GGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CAA 90 bp GGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCGAGACTTCAAGGCCATaGGAGGGGCAGGAGGATCGA +
Preference number: 3 (lower is better)
Translates to: GAGGSTETVPMSNFSWAGETSRP*EGQEDR
Trigger: TCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCTC...GCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR TCA 72 bp CTGGGGAGGAAGGGCTTGAACACCTGGCCAGGCTCCTaGACCACCACTTGTAGGATCTTCAGGAACTTCTCC +
Preference number: 3 (lower is better)
Translates to: LGRKGLNTWPGS*TTTCRIFRNFS
Trigger: GGAGAAGTTCCTGAAGATCCTACAAGTGGTGGTTCAGGAGCCTGGCCAGGTGTTCAAGCCCTTCCTCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 72 bp TCTTCAGGAACTTCTCCACCACCCGGCAGCCAGTGCTaGCTTCATGGAGGATGCTCTCAGCCAACTGTTCTC +
Preference number: 3 (lower is better)
Translates to: SSGTSPPPGSQC*LHGGCSQPTVL
Trigger: GAGAACAGTTGGCTGAGAGCATCCTCCATGAAGGCAGCACTGGCTGCCGGGTGGTGGAGAAGTTCCTGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 72 bp GGATCTTCAGGAACTTCTCCACCACCCGGCAGCCAGTaGTGCCTTCATGGAGGATGCTCTCAGCCAACTGTT +
Preference number: 3 (lower is better)
Translates to: GSSGTSPPPGSQ*CLHGGCSQPTV
Trigger: AACAGTTGGCTGAGAGCATCCTCCATGAAGGCAGCACTGGCTGCCGGGTGGTGGAGAAGTTCCTGAAGATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 72 bp GGCTCATTCTCCATCTGCTCCTCAGCGATGCCCCTCTaGACGCTAGCGAGGACAGTGGACTTGAAGAAGTAC +
Preference number: 3 (lower is better)
Translates to: GSFSICSSAMPL*TLARTVDLKKY
Trigger: GTACTTCTTCAAGTCCACTGTCCTCGCTAGCGTGCAGAGGGGCATCGCTGAGGAGCAGATGGAGAATGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR TCA 72 bp GCGAGGACAGTGGACTTGAAGAAGTACCGCCAGTTGTaGTGGAGCGTTCGAAAGAGGAGCTCAAACAGCTCA +
Preference number: 3 (lower is better)
Translates to: ARTVDLKKYRQL*WSVRKRSSNSS
Trigger: TGAGCTGTTTGAGCTCCTCTTTCGAACGCTCCATCACAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR GCA 72 bp TGGGCAGAGGCATCAATGATGCTGTTGAACACCTTCTaGACTGCAGGGATACTGATCAGAAAGACAGGCCGC +
Preference number: 3 (lower is better)
Translates to: WAEASMMLLNTF*TAGILIRKTGR
Trigger: GCGGCCTGTCTTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGCCTCTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR-3UTR CAA 90 bp CAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTGAGAGTGGTCAAGGCTaGTCACAGACTTCCGTGGCA +
Preference number: 3 (lower is better)
Translates to: QGHWRGRRIDRNSSNVEFESGQG*SQTSVA
Trigger: TGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTC...AAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CAA 90 bp CAAACTGCTGTGTGTTCTGTCGATGGGCTTCACCGCAGTACTGCGCCAGCCAGTCCATACAGAGTAACTTaGACCAACCTCTCCACAACT +
Preference number: 3 (lower is better)
Translates to: QTAVCSVDGLHRSTAPASPYRVT*TNLSTT
Trigger: AGTTGTGGAGAGGTTGGTCAAAGTTACTCTGTATGG...ACTGGCTGGCGCAGTACTGCGGTGAAGCCCATCGACAGAACACACAGCAGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR-3UTR CAA 90 bp TCTGTTAGACGCTGGGCAGAGGCATCAATGATGCTGTTGAACACCTTCTGCACTCAGCAGCAACTTGTCTaGGACCTTGGTGCTGATGAG +
Preference number: 3 (lower is better)
Translates to: SVRRWAEASMMLLNTFCTQQQLV*DLGADE
Trigger: CTCATCAGCACCAAGGTCCAAGACAAGTTGCTGCTG...AGTGCAGAAGGTGTTCAACAGCATCATTGATGCCTCTGCCCAGCGTCTAACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR-3UTR CAA 90 bp ATTGCAGAGTCGGTAGTAACGGAGATCATTTACCAGCCTGTGCACATTCTGGGTAAACCTGAAACTCCCTaGGTGGAGCCAAGCACGCCT +
Preference number: 3 (lower is better)
Translates to: IAESVVTEIIYQPVHILGKPETP*VEPSTP
Trigger: AGGCGTGCTTGGCTCCACCAAGGGAGTTTCAGGTTT...ACCCAGAATGTGCACAGGCTGGTAAATGATCTCCGTTACTACCGACTCTGCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
3UTR GCA 72 bp GTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTaGTCCAAATGTGTAGAAACTCTACCAGTGTCAAAT +
Preference number: 3 (lower is better)
Translates to: VPPWHLAIGPSA*SKCVETLPVSN
Trigger: ATTTGACACTGGTAGAGTTTCTACACATTTGGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR GCA 72 bp AGAGGCATCAATGATGCTGTTGAACACCTTCTGCACTaGAGGGATACTGATCAGAAAGACAGGCCGCACGGT +
Preference number: 3 (lower is better)
Translates to: RGINDAVEHLLH*RDTDQKDRPHG
Trigger: ACCGTGCGGCCTGTCTTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR-3UTR CAA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGTGTTGTCAGAGGTCCTaGGCCATTTTGACTCAGGAC +
Preference number: 3 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQCCQRS*AILTQD
Trigger: GTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACA...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR-3UTR CAA 90 bp GGGTACACTTGCTCCATGCACAGCGCGATAATGCTGGGGAGGAAGGGCTTGAACTCTCTGGTAAACATGTaGAGGAAAGTCTGTATGATC +
Preference number: 3 (lower is better)
Translates to: GYTCSMHSAIMLGRKGLNSLVNM*RKVCMI
Trigger: GATCATACAGACTTTCCTCAACATGTTTACCAGAGA...GTTCAAGCCCTTCCTCCCCAGCATTATCGCGCTGTGCATGGAGCAAGTGTACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR TCA 72 bp GAAGGTGGCACTGTTGTCAGAGGTCCTTGGCCATTTTaGCTCAGGACTGATACACACGATCTGCATGAACCA +
Preference number: 3 (lower is better)
Translates to: EGGTVVRGPWPF*LRTDTHDLHEP
Trigger: TGGTTCATGCAGATCGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGCCACCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR CCA 72 bp CCTGGAGCAGCACGTTCACGAACTGGAACAGCATGGTaGTCCGGAAGATCTTTTTGTGGTATAGTTTCTGCT +
Preference number: 3 (lower is better)
Translates to: PGAARSRTGTAW*SGRSFCGIVSA
Trigger: AGCAGAAACTATACCACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCGTGAACGTGCTGCTCCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR CCA 72 bp GGACCTGGAGCAGCACGTTCACGAACTGGAACAGCATaGTGGTCCGGAAGATCTTTTTGTGGTATAGTTTCT +
Preference number: 3 (lower is better)
Translates to: GPGAARSRTGTA*WSGRSFCGIVS
Trigger: AGAAACTATACCACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCGTGAACGTGCTGCTCCAGGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR TCA 72 bp CTGCTCCAAATGTGTAGAAACTCTACCAGTGTCAAATaGACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGA +
Preference number: 3 (lower is better)
Translates to: LLQMCRNSTSVK*TPKPAVLEAAG
Trigger: TCCTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTCTACACATTTGGAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000171861.8
3UTR GCA 72 bp TCTCTGGTAAACATGTTGAGGAAAGTCTGTATGATCTaGTCTGTGAACGGCACGCCCATCTGTACTCGAAGG +
Preference number: 3 (lower is better)
Translates to: SLVNMLRKVCMI*SVNGTPICTRR
Trigger: CCTTCGAGTACAGATGGGCGTGCCGTTCACAGAGCAGATCATACAGACTTTCCTCAACATGTTTACCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR CCA 72 bp AGAAGCCATCAAAGTCGACAGAAGCCATGTTGTAAATaGCAATGCCGATCTCCTCCTGCAGAAGGTCATGAG +
Preference number: 3 (lower is better)
Translates to: RSHQSRQKPCCK*QCRSPPAEGHE
Trigger: CTCATGACCTTCTGCAGGAGGAGATCGGCATTGCCATTTACAACATGGCTTCTGTCGACTTTGATGGCTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
3UTR TCA 72 bp AACGGAGATCATTTACCAGCCTGTGCACATTCTGGGTaGACGATGGTAGGTCCTGTGTTGAACTTTCAAAGT +
Preference number: 3 (lower is better)
Translates to: NGDHLPACAHSG*TMVGPVLNFQS
Trigger: ACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGTAAATGATCTCCGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
3UTR TCA 72 bp TCGTGTTCAGAGTCTCCAAGTAGAAGAGATTTTGTTTaGACAGGTGGATGTCAGGCTGAAGAAAGGACTGTC +
Preference number: 3 (lower is better)
Translates to: SCSESPSRRDFV*TGGCQAEERTV
Trigger: GACAGTCCTTTCTTCAGCCTGACATCCACCTGTTCAAACAAAATCTCTTCTACTTGGAGACTCTGAACACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR GCA 90 bp TGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTGCTCCCCCGGCAGCCAGTGCTaGCTTCATGGAGGATGCTCT +
Preference number: 4 (lower is better)
Translates to: WGLWVPPWHLAIGPSACSPGSQC*LHGGCS
Trigger: AGAGCATCCTCCATGAAGGCAGCACTGGCTGCCGGG...GGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp TGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTGCTCCCAGGCCGCACGGTGGTaGCTAGTGAGACCAGTAGGT +
Preference number: 4 (lower is better)
Translates to: WGLWVPPWHLAIGPSACSQAARW*LVRPVG
Trigger: ACCTACTGGTCTCACTAGCCACCACCGTGCGGCCTG...GGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp CTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGCCCACCCGGCAGCCAGTaGTGCCTTCATGGAGGATGC +
Preference number: 4 (lower is better)
Translates to: LVTDFRGTGAGGVGGGGSPPGSQ*CLHGGC
Trigger: GCATCCTCCATGAAGGCAGCACTGGCTGCCGGGTGG...GCTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp TGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTGCTCCAACTGGGAACAGGGTTaGGAAGGCGTGTGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: WGLWVPPWHLAIGPSACSNWEQG*EGVCGK
Trigger: CTTCCCACACACGCCTTCTCAACCCTGTTCCCAGTT...GGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGTGGGGAGGAAGGGCTTaGACACCTGGCCAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: ETVPMSNFSWAGWARSGGWGGRA*TPGQAP
Trigger: AGGAGCCTGGCCAGGTGTTCAAGCCCTTCCTCCCCA...CCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp CTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGCCAAACAGCTCAGCCTTaGCATCAGGGGACGGGCGCT +
Preference number: 4 (lower is better)
Translates to: LVTDFRGTGAGGVGGGGSQTAQP*HQGTGA
Trigger: AGCGCCCGTCCCCTGATGTCAAGGCTGAGCTGTTTG...GCTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GGAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCGAGCGCAGAGGCCACTaGTGCTCACTCTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: GEGRGRPLAQGTPIQRVVERRGH*CSLSGR
Trigger: TCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCGCTC...GACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp TCAGGGGACGGGCGCTCAGCAATGATGGGGTACACTTGCTCCATGCACAGCGCGGAGCGCAGAGGCCACTaGTGCTCACTCTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: SGDGRSAMMGYTCSMHSAERRGH*CSLSGR
Trigger: TCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCGCTC...CGCGCTGTGCATGGAGCAAGTGTACCCCATCATTGCTGAGCGCCCGTCCCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR GCA 90 bp GCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGCCCGGCAGCCAGTGCTaGCTTCATGGAGGATGCTCT +
Preference number: 4 (lower is better)
Translates to: ACHRLPWHRCRWCRWWWQPGSQC*LHGGCS
Trigger: AGAGCATCCTCCATGAAGGCAGCACTGGCTGCCGGG...CTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGAGACAGGCCGCACGGTaGTGGCTAGTGAGACCAGTA +
Preference number: 4 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKRQAAR*WLVRPV
Trigger: TACTGGTCTCACTAGCCACCACCGTGCGGCCTGTCT...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGAAGGGCCAGGGAGACCTaGACAGATTCCTGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGRARET*TDSCSD
Trigger: GTCACTGCAGGAATCTGTTCAGGTCTCCCTGGCCCT...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GATACACACGATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCACGGGCGCTCAGCAATaGTGGGGTACACTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: DTHDLHEPRCGVSGYLPGTGAQQ*WGTLAP
Trigger: TGGAGCAAGTGTACCCCATCATTGCTGAGCGCCCGT...GCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGATCGTGTGTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GATACACACGATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCCATCCAGGATGGGGATaGGCTGGTGCAGCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: DTHDLHEPRCGVSGYLPGHPGWG*AGAAVW
Trigger: CCAAACTGCTGCACCAGCCCATCCCCATCCTGGATG...GCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGATCGTGTGTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACTCTCCACATCCAGGATaGGGATGGGCTGGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHSPHPG*GWAGAA
Trigger: TGCTGCACCAGCCCATCCCCATCCTGGATGTGGAGA...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GTCTGTATGATCTGCTCTGTGAACGGCACGCCCATCTGTACTCGAAGGCCTCGGAGTGGCACCTTTCTCTaGGGGGCAGTAGCACTGGGC +
Preference number: 4 (lower is better)
Translates to: VCMICSVNGTPICTRRPRSGTFL*GAVALG
Trigger: GCCCAGTGCTACTGCCCCCCAGAGAAAGGTGCCACT...CCGAGGCCTTCGAGTACAGATGGGCGTGCCGTTCACAGAGCAGATCATACAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR CCA 90 bp TGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGGTCCCTCTGCCTGCTCCCTGATGGATAAAAGCTaGAAAGAGGGCCAGGGAGAC +
Preference number: 4 (lower is better)
Translates to: WGLWVPPWHLAIGPSACSLMDKS*KEGQGD
Trigger: GTCTCCCTGGCCCTCTTTCCAGCTTTTATCCATCAG...GGAGCAGGCAGAGGGACCTATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTCCTTCCGAGCCACGCTaGGGTCCTCACGTGGACAAG +
Preference number: 4 (lower is better)
Translates to: GQEDRQKQFQCRISPGLAPSEPR*GPHVDK
Trigger: CTTGTCCACGTGAGGACCTCAGCGTGGCTCGGAAGG...AGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GGAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAACAGATTCCTGCAGTaGCTGGTAGCAGATCTGTCG +
Preference number: 4 (lower is better)
Translates to: GEGRGRPLAQGTPIQRVVNRFLQ*LVADLS
Trigger: CGACAGATCTGCTACCAGTCACTGCAGGAATCTGTT...GACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp TTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTTGGGGAGGAAGGGCTTaGACACCTGGCCAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LLRAHQSREWSRLVTDFRWGGRA*TPGQAP
Trigger: AGGAGCCTGGCCAGGTGTTCAAGCCCTTCCTCCCCA...ACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCATGTGCACATTCTGGGTaGACGATGGTAGGTCCCGAT +
Preference number: 4 (lower is better)
Translates to: ERAEAGHLLRAHQSREWSCAHSG*TMVGPD
Trigger: ATCGGGACCTACCATCGTTCACCCAGAATGTGCACA...TGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp AAGGCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCGAGTTCCTCTAGCCTaGTCTTCACCGTGTGGGCAT +
Preference number: 4 (lower is better)
Translates to: KACHRLPWHRCRWCRWWWRVPLA*SSPCGH
Trigger: ATGCCCACACGGTGAAGAGCAGGCTAGAGGAACTCG...CCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp CAAACTGCTGTGTGTTCTGTCGATGGGCTTCACCGCAGTACTGCGCCAGCCAGTTCTCGCAGGGAACAGTaGAAACGCCGGCAGTCGTTC +
Preference number: 4 (lower is better)
Translates to: QTAVCSVDGLHRSTAPASSRREQ*KRRQSF
Trigger: GAACGACTGCCGGCGTTTGCACTGTTCCCTGCGAGA...ACTGGCTGGCGCAGTACTGCGGTGAAGCCCATCGACAGAACACACAGCAGTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
3UTR CAA 72 bp TGGAGCGTTCGAAAGAGGAGCTCAAACAGCTCAGCCTaGACATCAGGGGACGGGCGCTCAGCAATGATGGGG +
Preference number: 4 (lower is better)
Translates to: WSVRKRSSNSSA*TSGDGRSAMMG
Trigger: CCCCATCATTGCTGAGCGCCCGTCCCCTGATGTCAAGGCTGAGCTGTTTGAGCTCCTCTTTCGAACGCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR TCA 90 bp TCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTGGCAGGCTTTCCAACGCCCTaGGGGAGGCTTCTTCTGATG +
Preference number: 4 (lower is better)
Translates to: SGHTNPESGQGLSQTSVAGFPTP*GRLLLM
Trigger: CATCAGAAGAAGCCTCCCTCAGGGCGTTGGAAAGCC...TGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCAGTCGGCCACGCTCCTaGCCCAAAACACAGTTCTGG +
Preference number: 4 (lower is better)
Translates to: GAGGSTETVPMSNFSWAGSRPRS*PKTQFW
Trigger: CCAGAACTGTGTTTTGGGTCAGGAGCGTGGCCGACT...GCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GCGATGCCCCTCTGCACGCTAGCGAGGACAGTGGACTTGAAGAAGTACCGCCAGAACAGATTCCTGCAGTaGCTGGTAGCAGATCTGTCG +
Preference number: 4 (lower is better)
Translates to: AMPLCTLARTVDLKKYRQNRFLQ*LVADLS
Trigger: CGACAGATCTGCTACCAGTCACTGCAGGAATCTGTT...CTGGCGGTACTTCTTCAAGTCCACTGTCCTCGCTAGCGTGCAGAGGGGCATCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR TCA 90 bp GGAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCCTCGTCAGTCACATCTaGCTGATGGATAAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: GEGRGRPLAQGTPIQRVVLVSHI*LMDKSW
Trigger: CCAGCTTTTATCCATCAGTCAGATGTGACTGACGAG...GACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGCAAACAGCTCAGCCTTaGCATCAGGGGACGGGCGCT +
Preference number: 4 (lower is better)
Translates to: EGQEDRQKQFQCRISPGLQTAQP*HQGTGA
Trigger: AGCGCCCGTCCCCTGATGTCAAGGCTGAGCTGTTTG...CAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GATACACACGATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCTGTGCACATTCTGGGTaGACGATGGTAGGTCCCGAT +
Preference number: 4 (lower is better)
Translates to: DTHDLHEPRCGVSGYLPGCAHSG*TMVGPD
Trigger: ATCGGGACCTACCATCGTTCACCCAGAATGTGCACA...GCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGATCGTGTGTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp AGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGATCTCGCAGGGAACAGTaGAAACGCCGGCAGTCGTTC +
Preference number: 4 (lower is better)
Translates to: RPLAQGTPIQRVVKACHRSRREQ*KRRQSF
Trigger: GAACGACTGCCGGCGTTTGCACTGTTCCCTGCGAGA...TCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GATACACACGATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCCGCAGAGGCCACTGCTaGTCACTCTCAGGAAGATTT +
Preference number: 4 (lower is better)
Translates to: DTHDLHEPRCGVSGYLPGRRGHC*SLSGRF
Trigger: AAATCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCG...GCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGATCGTGTGTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGTGCCTTCATGGAGGATaGTCTCAGCCAACTGTTCTC +
Preference number: 4 (lower is better)
Translates to: ACHRLPWHRCRWCRWWWQCLHGG*SQPTVL
Trigger: GAGAACAGTTGGCTGAGAGCATCCTCCATGAAGGCA...CTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGACTGTCCAAAAGCCTaGATGATGGCACTGAACTGG +
Preference number: 4 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKDCPKA*MMALNW
Trigger: CCAGTTCAGTGCCATCATGCAGGCTTTTGGACAGTC...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR CCA 90 bp TCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTGGCACATCCAGGATGGGGATaGGCTGGTGCAGCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: SGHTNPESGQGLSQTSVAHPGWG*AGAAVW
Trigger: CCAAACTGCTGCACCAGCCCATCCCCATCCTGGATG...TGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp CAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGAGTGAGACCAGTAGGTaGCACGCAGACAGCAGCAAC +
Preference number: 4 (lower is better)
Translates to: QATCSGHTNPESGQGLSQSETSR*HADSSN
Trigger: GTTGCTGCTGTCTGCGTGCCACCTACTGGTCTCACT...CTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGAGTGGCACCTTTCTCTaGGGGGCAGTAGCACTGGGC +
Preference number: 4 (lower is better)
Translates to: EGQEDRQKQFQCRISPGLSGTFL*GAVALG
Trigger: GCCCAGTGCTACTGCCCCCCAGAGAAAGGTGCCACT...CAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AAGGCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGAGCCTGTGCACATTCTaGGTGAACGATGGTAGGTCC +
Preference number: 4 (lower is better)
Translates to: KACHRLPWHRCRWCRWWWSLCTF*VNDGRS
Trigger: GGACCTACCATCGTTCACCCAGAATGTGCACAGGCT...CCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGCCTT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTTCCGAGCCACGCTaGGGTCCTCACGTGGACAAG +
Preference number: 4 (lower is better)
Translates to: RPLEGQEDRQKQFQCRISPSEPR*GPHVDK
Trigger: CTTGTCCACGTGAGGACCTCAGCGTGGCTCGGAAGG...AGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTAGTCGGCCACGCTCCTaGCCCAAAACACAGTTCTGG +
Preference number: 4 (lower is better)
Translates to: GGAGGSTETVPMSNFSWASRPRS*PKTQFW
Trigger: CCAGAACTGTGTTTTGGGTCAGGAGCGTGGCCGACT...AGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCGCACTGCAGGGATACTaGTCAGAAAGACAGGCCGCA +
Preference number: 4 (lower is better)
Translates to: GAGGSTETVPMSNFSWAGALQGY*SERQAA
Trigger: TGCGGCCTGTCTTTCTGATCAGTATCCCTGCAGTGC...GCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGAGGTGGATGTCAGGCTaGAGAAAGGACTGTCCAAAA +
Preference number: 4 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKRWMSG*RKDCPK
Trigger: TTTTGGACAGTCCTTTCTTCAGCCTGACATCCACCT...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR GCA 90 bp GTCTGTATGATCTGCTCTGTGAACGGCACGCCCATCTGTACTCGAAGGCCTCGGCGCAGAGGCCACTGCTaGTCACTCTCAGGAAGATTT +
Preference number: 4 (lower is better)
Translates to: VCMICSVNGTPICTRRPRRRGHC*SLSGRF
Trigger: AAATCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCG...CCGAGGCCTTCGAGTACAGATGGGCGTGCCGTTCACAGAGCAGATCATACAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR GCA 90 bp TTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTGAGCGCAGAGGCCACTaGTGCTCACTCTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: LLRAHQSREWSRLVTDFRERRGH*CSLSGR
Trigger: TCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCGCTC...ACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GATACACACGATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCAAAGTCTGTATGATCTaGTCTGTGAACGGCACGCCC +
Preference number: 4 (lower is better)
Translates to: DTHDLHEPRCGVSGYLPGKVCMI*SVNGTP
Trigger: GGGCGTGCCGTTCACAGAGCAGATCATACAGACTTT...GCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGATCGTGTGTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp CATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGCCACCCGGCAGCCAGTaGTGCCTTCATGGAGGATGC +
Preference number: 4 (lower is better)
Translates to: HWRGRRIDRNSSNVEFLLPPGSQ*CLHGGC
Trigger: GCATCCTCCATGAAGGCAGCACTGGCTGCCGGGTGG...CAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGATGATGGGGTACACTTaGTCCATGCACAGCGCGATA +
Preference number: 4 (lower is better)
Translates to: ETVPMSNFSWAGWARSGGMMGYT*SMHSAI
Trigger: TATCGCGCTGTGCATGGAGCAAGTGTACCCCATCAT...CCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACATGATGGGGTACACTTaGTCCATGCACAGCGCGATA +
Preference number: 4 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHMMGYT*SMHSAI
Trigger: TATCGCGCTGTGCATGGAGCAAGTGTACCCCATCAT...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp ATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATGACTGTCCAAAAGCCTaGATGATGGCACTGAACTGG +
Preference number: 4 (lower is better)
Translates to: ICMNHAVGSLGTSLASGHDCPKA*MMALNW
Trigger: CCAGTTCAGTGCCATCATGCAGGCTTTTGGACAGTC...ATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR CCA 90 bp GGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTAGTGGTGAGGAGGGATaGGGTGATGCTGGCAGACAG +
Preference number: 4 (lower is better)
Translates to: GGAGGSTETVPMSNFSWASGEEG*GDAGRQ
Trigger: CTGTCTGCCAGCATCACCCCATCCCTCCTCACCACT...AGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCCAGGCCGCACGGTGGTaGCTAGTGAGACCAGTAGGT +
Preference number: 4 (lower is better)
Translates to: AIGGAGGSTETVPMSNFSQAARW*LVRPVG
Trigger: ACCTACTGGTCTCACTAGCCACCACCGTGCGGCCTG...GGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTAGACAGGCCGCACGGTaGTGGCTAGTGAGACCAGTA +
Preference number: 4 (lower is better)
Translates to: GGAGGSTETVPMSNFSWARQAAR*WLVRPV
Trigger: TACTGGTCTCACTAGCCACCACCGTGCGGCCTGTCT...AGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAACTCTCAGGAAGATTTaGCCATGGAAGGAGCAAGGT +
Preference number: 4 (lower is better)
Translates to: ERAEAGHLLRAHQSREWSTLRKI*PWKEQG
Trigger: ACCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGT...TGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGAGATGAGGCTGGCATaGTTGATCGAGCGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: EDRQKQFQCRISPGLAGPEMRLA*LIERRG
Trigger: GCCTCTGCGCTCGATCAACCATGCCAGCCTCATCTC...TGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp CTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGAGCACGTTCACGAACTaGAACAGCATGGTGGTCCGG +
Preference number: 4 (lower is better)
Translates to: LAQGTPIQRVVKACHRLPSTFTN*NSMVVR
Trigger: CCGGACCACCATGCTGTTCCAGTTCGTGAACGTGCT...CGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGGCTTTCCAACGCCCTaGGGGAGGCTTCTTCTGATG +
Preference number: 4 (lower is better)
Translates to: RLQGHWRGRRIDRNSSNVGFPTP*GRLLLM
Trigger: CATCAGAAGAAGCCTCCCTCAGGGCGTTGGAAAGCC...GACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGAACTGGGAACAGGGTTaGGAAGGCGTGTGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: RIDRNSSNVEFLLGWLGQNWEQG*EGVCGK
Trigger: CTTCCCACACACGCCTTCTCAACCCTGTTCCCAGTT...CTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGCAAACACATCCCCAATaGAGTATTCAGCTAATCGGC +
Preference number: 4 (lower is better)
Translates to: ACHRLPWHRCRWCRWWWQQTHPQ*SIQLIG
Trigger: GCCGATTAGCTGAATACTTCATTGGGGATGTGTTTG...CTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGCACTGCAGGGATACTaGTCAGAAAGACAGGCCGCA +
Preference number: 4 (lower is better)
Translates to: RIDRNSSNVEFLLGWLGQALQGY*SERQAA
Trigger: TGCGGCCTGTCTTTCTGATCAGTATCCCTGCAGTGC...CTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACGAGGACAGTGGACTTaGAGAAGTACCGCCAGTTGT +
Preference number: 4 (lower is better)
Translates to: RPLAQGTPIQRVVKACHRRGQWT*RSTASC
Trigger: ACAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCG...TCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGAAGGTGGATGTCAGGCTaGAGAAAGGACTGTCCAAAA +
Preference number: 4 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGRWMSG*RKDCPK
Trigger: TTTTGGACAGTCCTTTCTTCAGCCTGACATCCACCT...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR TCA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACCCCAGAACGTTTTTCTaGTTGGCATCCACACCATCA +
Preference number: 4 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHPRTFF*LASTPS
Trigger: TGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGG...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGTCCCGATCCATCTTaGAATTCCGCCCCAGAACGT +
Preference number: 4 (lower is better)
Translates to: EDRQKQFQCRISPGLAGPGPDPS*NSAPER
Trigger: ACGTTCTGGGGCGGAATTTCAAGATGGATCGGGACC...TGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGTGTTGTAAATGGCAATaGCGATCTCCTCCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: ACHRLPWHRCRWCRWWWQCCKWQ*RSPPAE
Trigger: TTCTGCAGGAGGAGATCGGCATTGCCATTTACAACA...CTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGTCATTTACCAGCCTGTaGACATTCTGGGTGAACGAT +
Preference number: 4 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKSFTSL*TFWVND
Trigger: ATCGTTCACCCAGAATGTGCACAGGCTGGTAAATGA...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp CACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCGGGGCAGGCTGTCATTaGAGAGTCGGTAGTAACGGA +
Preference number: 4 (lower is better)
Translates to: HLLRAHQSREWSRLVTDFGAGCH*RVGSNG
Trigger: TCCGTTACTACCGACTCTGCAATGACAGCCTGCCCC...GAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCACCCGCTTCCTTTCATTaGTTGTGCAGTCATGGAAAA +
Preference number: 4 (lower is better)
Translates to: ERAEAGHLLRAHQSREWSPASFH*LCSHGK
Trigger: TTTTCCATGACTGCACAACCAATGAAAGGAAGCGGG...TGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCTCTCCACATCCAGGATaGGGATGGGCTGGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: RLQGHWRGRRIDRNSSNVSPHPG*GWAGAA
Trigger: TGCTGCACCAGCCCATCCCCATCCTGGATGTGGAGA...GACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AAGGCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCCAAATCGAGCAAAGTaGAAGATAGTGGTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: KACHRLPWHRCRWCRWWWPNRAK*KIVVRR
Trigger: CCTCCTCACCACTATCTTCCACTTTGCTCGATTTGG...CCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGAGTGAGACCAGTAGGTaGCACGCAGACAGCAGCAAC +
Preference number: 4 (lower is better)
Translates to: RIDRNSSNVEFLLGWLGQSETSR*HADSSN
Trigger: GTTGCTGCTGTCTGCGTGCCACCTACTGGTCTCACT...CTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GGTCATGAGACTTATGAACCAGGACCTGGAGCAGCACGTTCACGAACTGGAACAGAGATGAGGCTGGCATaGTTGATCGAGCGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: GHETYEPGPGAARSRTGTEMRLA*LIERRG
Trigger: GCCTCTGCGCTCGATCAACCATGCCAGCCTCATCTC...TGTTCCAGTTCGTGAACGTGCTGCTCCAGGTCCTGGTTCATAAGTCTCATGACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR CCA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGAGTGGCACCTTTCTCTaGGGGGCAGTAGCACTGGGC +
Preference number: 4 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQSGTFL*GAVALG
Trigger: GCCCAGTGCTACTGCCCCCCAGAGAAAGGTGCCACT...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTAGCACGTTCACGAACTaGAACAGCATGGTGGTCCGG +
Preference number: 4 (lower is better)
Translates to: GGAGGSTETVPMSNFSWASTFTN*NSMVVR
Trigger: CCGGACCACCATGCTGTTCCAGTTCGTGAACGTGCT...AGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGGAACGTTTTTCTGATTaGCATCCACACCATCACAGC +
Preference number: 4 (lower is better)
Translates to: ACHRLPWHRCRWCRWWWQERFSD*HPHHHS
Trigger: GCTGTGATGGTGTGGATGCCAATCAGAAAAACGTTC...CTGCCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GTGGCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGACAGAGGAATCCAACTaGAGAGGTGGGCCAGGCACT +
Preference number: 4 (lower is better)
Translates to: VALLSEVLGHFDSGLIHTTEESN*RGGPGT
Trigger: AGTGCCTGGCCCACCTCTTCAGTTGGATTCCTCTGT...CGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp CCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTAGGGCCAGGGAGACCTaGACAGATTCCTGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: PLEGQEDRQKQFQCRISPRARET*TDSCSD
Trigger: GTCACTGCAGGAATCTGTTCAGGTCTCCCTGGCCCT...AGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp CATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGACGGGCGCTCAGCAATaGTGGGGTACACTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: HWRGRRIDRNSSNVEFLLTGAQQ*WGTLAP
Trigger: TGGAGCAAGTGTACCCCATCATTGCTGAGCGCCCGT...CAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGAGAAGAGATTTTGTTTaGACAGGTGGATGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: RAEAGHLLRAHQSREWSRRRDFV*TGGCQA
Trigger: AGCCTGACATCCACCTGTTCAAACAAAATCTCTTCT...CCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR GCA 90 bp CAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTTCTCGCAGGGAACAGTaGAAACGCCGGCAGTCGTTC +
Preference number: 4 (lower is better)
Translates to: QGHWRGRRIDRNSSNVEFSRREQ*KRRQSF
Trigger: GAACGACTGCCGGCGTTTGCACTGTTCCCTGCGAGA...AAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp AGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGAAAAGTCTGTATGATCTaGTCTGTGAACGGCACGCCC +
Preference number: 4 (lower is better)
Translates to: RPLAQGTPIQRVVKACHRKVCMI*SVNGTP
Trigger: GGGCGTGCCGTTCACAGAGCAGATCATACAGACTTT...TCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACTGTTGTAAATGGCAATaGCGATCTCCTCCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHCCKWQ*RSPPAE
Trigger: TTCTGCAGGAGGAGATCGGCATTGCCATTTACAACA...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGATCAGTGGTGAGGAGGGATaGGGTGATGCTGGCAGACAG +
Preference number: 4 (lower is better)
Translates to: ALLSEVLGHFDSGLIHTISGEEG*GDAGRQ
Trigger: CTGTCTGCCAGCATCACCCCATCCCTCCTCACCACT...GATCGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp TTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATGAGATGAGGCTGGCATaGTTGATCGAGCGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: FKAIGGAGGSTETVPMSNEMRLA*LIERRG
Trigger: GCCTCTGCGCTCGATCAACCATGCCAGCCTCATCTC...ATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp TTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTAGCCTGTGCACATTCTaGGTGAACGATGGTAGGTCC +
Preference number: 4 (lower is better)
Translates to: LLRAHQSREWSRLVTDFRSLCTF*VNDGRS
Trigger: GGACCTACCATCGTTCACCCAGAATGTGCACAGGCT...ACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGATCAGTCACATCTGACTaGTGGATAAAAGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGSVTSD*WIKAGK
Trigger: CTTTCCAGCTTTTATCCATCAGTCAGATGTGACTGA...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGATCGGCCTCGGAACAAGGTaGGGAAGAAGCTCAGCATCT +
Preference number: 4 (lower is better)
Translates to: ALLSEVLGHFDSGLIHTIGLGTR*GRSSAS
Trigger: AGATGCTGAGCTTCTTCCTCACCTTGTTCCGAGGCC...GATCGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGGCCTCGGAACAAGGTaGGGAAGAAGCTCAGCATCT +
Preference number: 4 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQGLGTR*GRSSAS
Trigger: AGATGCTGAGCTTCTTCCTCACCTTGTTCCGAGGCC...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp CAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTGGTCCCGATCCATCTTaGAATTCCGCCCCAGAACGT +
Preference number: 4 (lower is better)
Translates to: QGHWRGRRIDRNSSNVEFGPDPS*NSAPER
Trigger: ACGTTCTGGGGCGGAATTTCAAGATGGATCGGGACC...AAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGCCTCCCGATCCATCTTaGAATTCCGCCCCAGAACGT +
Preference number: 4 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQPPDPS*NSAPER
Trigger: ACGTTCTGGGGCGGAATTTCAAGATGGATCGGGAGG...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
CDS-3UTR GCA 90 bp CAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTGGGGCAGGCTGTCATTaGAGAGTCGGTAGTAACGGA +
Preference number: 4 (lower is better)
Translates to: QGHWRGRRIDRNSSNVEFGAGCH*RVGSNG
Trigger: TCCGTTACTACCGACTCTGCAATGACAGCCTGCCCC...AAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp TCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTGGCAGAGCCAAGAGAAGTTTaGGCAAGCAGCTACGGATTT +
Preference number: 4 (lower is better)
Translates to: SGHTNPESGQGLSQTSVAEPREV*ASSYGF
Trigger: AAATCCGTAGCTGCTTGCCCAAACTTCTCTTGGCTC...TGCCACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGTTATCTGTTAGACGCTaGGCAGAGGCATCAATGATG +
Preference number: 4 (lower is better)
Translates to: DRNSSNVEFLLGWLGQERLSVRR*AEASMM
Trigger: CATCATTGATGCCTCTGCCCAGCGTCTAACAGATAA...CCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp ATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATTCTGTCGAGACTTGGTaGATTCCCCAGAAATATTCT +
Preference number: 4 (lower is better)
Translates to: ICMNHAVGSLGTSLASGHSVETW*IPQKYS
Trigger: AGAATATTTCTGGGGAATCCACCAAGTCTCGACAGA...ATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp ATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCATCTGGCCATAGATCTGTCGAGACTTaGTGGATTCCCCAGAAATAT +
Preference number: 4 (lower is better)
Translates to: ICMNHAVGSLGTSLASGHRSVET*WIPQKY
Trigger: ATATTTCTGGGGAATCCACCAAGTCTCGACAGATCT...ATGGCCAGATGCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGCTGATGGATAAAAGCTaGAAAGAGGGCCAGGGAGAC +
Preference number: 4 (lower is better)
Translates to: RIDRNSSNVEFLLGWLGQLMDKS*KEGQGD
Trigger: GTCTCCCTGGCCCTCTTTCCAGCTTTTATCCATCAG...CTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCCGAACTGGAACAGCATaGTGGTCCGGAAGATCTTTT +
Preference number: 4 (lower is better)
Translates to: GAGGSTETVPMSNFSWAGRTGTA*WSGRSF
Trigger: AAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCG...GCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp CTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGCGAACTGGAACAGCATaGTGGTCCGGAAGATCTTTT +
Preference number: 4 (lower is better)
Translates to: LAQGTPIQRVVKACHRLPRTGTA*WSGRSF
Trigger: AAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCG...CGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GTGGCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGAACAGATTCCTGCAGTaGCTGGTAGCAGATCTGTCG +
Preference number: 4 (lower is better)
Translates to: VALLSEVLGHFDSGLIHTNRFLQ*LVADLS
Trigger: CGACAGATCTGCTACCAGTCACTGCAGGAATCTGTT...CGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGATCCGAGGACAGTGGACTTaGAGAAGTACCGCCAGTTGT +
Preference number: 4 (lower is better)
Translates to: ALLSEVLGHFDSGLIHTIRGQWT*RSTASC
Trigger: ACAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCG...GATCGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp TTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTAGGTGGATGTCAGGCTaGAGAAAGGACTGTCCAAAA +
Preference number: 4 (lower is better)
Translates to: LLRAHQSREWSRLVTDFRRWMSG*RKDCPK
Trigger: TTTTGGACAGTCCTTTCTTCAGCCTGACATCCACCT...ACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR GCA 90 bp AAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCCGCAGAGGCCACTGCTaGTCACTCTCAGGAAGATTT +
Preference number: 4 (lower is better)
Translates to: KAIGGAGGSTETVPMSNFRRGHC*SLSGRF
Trigger: AAATCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCG...GAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp ACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGAGTGCCTTCATGGAGGATaGTCTCAGCCAACTGTTCTC +
Preference number: 4 (lower is better)
Translates to: TLPVSNELQNLLCWRQQECLHGG*SQPTVL
Trigger: GAGAACAGTTGGCTGAGAGCATCCTCCATGAAGGCA...CTCCTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp AGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGACTGTCCAAAAGCCTaGATGATGGCACTGAACTGG +
Preference number: 4 (lower is better)
Translates to: RLQGHWRGRRIDRNSSNVDCPKA*MMALNW
Trigger: CCAGTTCAGTGCCATCATGCAGGCTTTTGGACAGTC...GACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR CCA 90 bp GGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCCCCGCTTCCTTTCATTaGTTGTGCAGTCATGGAAAA +
Preference number: 4 (lower is better)
Translates to: GAGGSTETVPMSNFSWAGPASFH*LCSHGK
Trigger: TTTTCCATGACTGCACAACCAATGAAAGGAAGCGGG...GCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGCCAAATCGAGCAAAGTaGAAGATAGTGGTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: EGQEDRQKQFQCRISPGLPNRAK*KIVVRR
Trigger: CCTCCTCACCACTATCTTCCACTTTGCTCGATTTGG...CAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp CAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGTCTGTCGAGACTTGGTaGATTCCCCAGAAATATTCT +
Preference number: 4 (lower is better)
Translates to: QATCSGHTNPESGQGLSQSVETW*IPQKYS
Trigger: AGAATATTTCTGGGGAATCCACCAAGTCTCGACAGA...CTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AGCCTTGACATCAGGGGACGGGCGCTCAGCAATGATGGGGTACACTTGCTCCATTCTGTCGAGACTTGGTaGATTCCCCAGAAATATTCT +
Preference number: 4 (lower is better)
Translates to: SLDIRGRALSNDGVHLLHSVETW*IPQKYS
Trigger: AGAATATTTCTGGGGAATCCACCAAGTCTCGACAGA...ATGGAGCAAGTGTACCCCATCATTGCTGAGCGCCCGTCCCCTGATGTCAAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR CCA 90 bp GGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCACTGGAACAGCATGGTaGTCCGGAAGATCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: GAGGSTETVPMSNFSWAGTGTAW*SGRSFC
Trigger: ACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGT...GCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp CTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCAGCACGTTCACGAACTaGAACAGCATGGTGGTCCGG +
Preference number: 4 (lower is better)
Translates to: LCTFWVNDGRSCVELSKCSTFTN*NSMVVR
Trigger: CCGGACCACCATGCTGTTCCAGTTCGTGAACGTGCT...GCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR TCA 90 bp AGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGATCAGTCACATCTGACTaGTGGATAAAAGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: RPLAQGTPIQRVVKACHRSVTSD*WIKAGK
Trigger: CTTTCCAGCTTTTATCCATCAGTCAGATGTGACTGA...TCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp CTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCCCATCCGATCCATCTTaGAATTCCGCCCCAGAACGT +
Preference number: 4 (lower is better)
Translates to: LCTFWVNDGRSCVELSKCPSDPS*NSAPER
Trigger: ACGTTCTGGGGCGGAATTTCAAGATGGATCGGATGG...GCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR GCA 90 bp GATACACACGATCTGCATGAACCACGCTGTGGGGTCTCTGGGTACCTCCCTGGCCATAGTCATTCCTTGTaGTGGACAGAAAATATAAGC +
Preference number: 4 (lower is better)
Translates to: DTHDLHEPRCGVSGYLPGHSHSL*WTENIS
Trigger: GCTTATATTTTCTGTCCAGCACAAGGAATGACTATG...GCCAGGGAGGTACCCAGAGACCCCACAGCGTGGTTCATGCAGATCGTGTGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp ACCAGCCTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAGACTGTCCAAAAGCCTaGATGATGGCACTGAACTGG +
Preference number: 4 (lower is better)
Translates to: TSLCTFWVNDGRSCVELSDCPKA*MMALNW
Trigger: CCAGTTCAGTGCCATCATGCAGGCTTTTGGACAGTC...TGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR CCA 90 bp AGAGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGACTCTCAGGAAGATTTaGCCATGGAAGGAGCAAGGT +
Preference number: 4 (lower is better)
Translates to: RDFKAIGGAGGSTETVPMTLRKI*PWKEQG
Trigger: ACCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGT...CATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGACTGGAACAGCATGGTaGTCCGGAAGATCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: RGRRIDRNSSNVEFLLGWTGTAW*SGRSFC
Trigger: ACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGT...CCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGCTAGTCAGGAACTCTaGAAGAAAGGCTGCAAAGAA +
Preference number: 4 (lower is better)
Translates to: GGAGGSTETVPMSNFSWAASQEL*KKGCKE
Trigger: TTCTTTGCAGCCTTTCTTCCAGAGTTCCTGACTAGC...AGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp GAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGAACGTTTTTCTGATTaGCATCCACACCATCACAGC +
Preference number: 4 (lower is better)
Translates to: EDRQKQFQCRISPGLAGPERFSD*HPHHHS
Trigger: GCTGTGATGGTGTGGATGCCAATCAGAAAAACGTTC...TGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
3UTR CAA 72 bp TCTGTTAGACGCTGGGCAGAGGCATCAATGATGCTGTaGAACACCTTCTGCACTGCAGGGATACTGATCAGA +
Preference number: 4 (lower is better)
Translates to: SVRRWAEASMML*NTFCTAGILIR
Trigger: TCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGCCTCTGCCCAGCGTCTAACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
CDS-3UTR TCA 90 bp ACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGAGCAAACACATCCCCAATaGAGTATTCAGCTAATCGGC +
Preference number: 4 (lower is better)
Translates to: TLPVSNELQNLLCWRQQEQTHPQ*SIQLIG
Trigger: GCCGATTAGCTGAATACTTCATTGGGGATGTGTTTG...CTCCTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp AGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCTCGTCAGTCACATCTaGCTGATGGATAAAAGCTGG +
Preference number: 4 (lower is better)
Translates to: RPLEGQEDRQKQFQCRISLVSHI*LMDKSW
Trigger: CCAGCTTTTATCCATCAGTCAGATGTGACTGACGAG...AGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp CCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTCCCAGAACGTTTTTCTaGTTGGCATCCACACCATCA +
Preference number: 4 (lower is better)
Translates to: PLEGQEDRQKQFQCRISPPRTFF*LASTPS
Trigger: TGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGG...AGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp GCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGATCCCCAGAACGTTTTTCTaGTTGGCATCCACACCATCA +
Preference number: 4 (lower is better)
Translates to: ALLSEVLGHFDSGLIHTIPRTFF*LASTPS
Trigger: TGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGG...GATCGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp ACCAGCCTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCACCCAGAACGTTTTTCTaGTTGGCATCCACACCATCA +
Preference number: 4 (lower is better)
Translates to: TSLCTFWVNDGRSCVELSPRTFF*LASTPS
Trigger: TGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGG...TGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000168564.2
CDS-3UTR TCA 90 bp GCATCAATGATGCTGTTGAACACCTTCTGCACTGCAGGGATACTGATCAGAAAGCAGCCTGTGTCCTGTTaGGAACTGCTTCCTTGTCTC +
Preference number: 4 (lower is better)
Translates to: ASMMLLNTFCTAGILIRKQPVSC*ELLPCL
Trigger: GAGACAAGGAAGCAGTTCTCAACAGGACACAGGCTG...CTTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
CDS-3UTR GCA 90 bp TTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGGAACACCTTCTGCACTaGAGGGATACTGATCAGAAA +
Preference number: 4 (lower is better)
Translates to: LEGQEDRQKQFQCRISPGEHLLH*RDTDQK
Trigger: TTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTC...CCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp GTGGCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGTCATTTACCAGCCTGTaGACATTCTGGGTGAACGAT +
Preference number: 4 (lower is better)
Translates to: VALLSEVLGHFDSGLIHTSFTSL*TFWVND
Trigger: ATCGTTCACCCAGAATGTGCACAGGCTGGTAAATGA...CGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp ACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGAGTTATCTGTTAGACGCTaGGCAGAGGCATCAATGATG +
Preference number: 4 (lower is better)
Translates to: TLPVSNELQNLLCWRQQELSVRR*AEASMM
Trigger: CATCATTGATGCCTCTGCCCAGCGTCTAACAGATAA...CTCCTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp CACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCAGATCTGTCGAGACTTaGTGGATTCCCCAGAAATAT +
Preference number: 4 (lower is better)
Translates to: HLLRAHQSREWSRLVTDFRSVET*WIPQKY
Trigger: ATATTTCTGGGGAATCCACCAAGTCTCGACAGATCT...GAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp CTGTCCAAAAGCCTGCATGATGGCACTGAACTGGGGCTCATTCTCCATCTGCTCAGATCTGTCGAGACTTaGTGGATTCCCCAGAAATAT +
Preference number: 4 (lower is better)
Translates to: LSKSLHDGTELGLILHLLRSVET*WIPQKY
Trigger: ATATTTCTGGGGAATCCACCAAGTCTCGACAGATCT...GAGCAGATGGAGAATGAGCCCCAGTTCAGTGCCATCATGCAGGCTTTTGGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR CCA 90 bp ACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGAGGCTAGTCAGGAACTCTaGAAGAAAGGCTGCAAAGAA +
Preference number: 4 (lower is better)
Translates to: TLPVSNELQNLLCWRQQEASQEL*KKGCKE
Trigger: TTCTTTGCAGCCTTTCTTCCAGAGTTCCTGACTAGC...CTCCTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
CDS-3UTR TCA 90 bp CTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCAGGTGGATGTCAGGCTaGAGAAAGGACTGTCCAAAA +
Preference number: 4 (lower is better)
Translates to: LCTFWVNDGRSCVELSKCRWMSG*RKDCPK
Trigger: TTTTGGACAGTCCTTTCTTCAGCCTGACATCCACCT...GCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR GCA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGAACACCTTCTGCACTaGAGGGATACTGATCAGAAA +
Preference number: 4 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQEHLLH*RDTDQK
Trigger: TTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTTC...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp ACCAGCCTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCATGTTGTAAATGGCAATaGCGATCTCCTCCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: TSLCTFWVNDGRSCVELSCCKWQ*RSPPAE
Trigger: TTCTGCAGGAGGAGATCGGCATTGCCATTTACAACA...TGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR CCA 90 bp GGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCAGTCATTCCTTGTGCTaGACAGAAAATATAAGCAGA +
Preference number: 4 (lower is better)
Translates to: GAGGSTETVPMSNFSWAGSHSLC*TENISR
Trigger: TCTGCTTATATTTTCTGTCCAGCACAAGGAATGACT...GCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp ACCAGCCTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAACTGGAACAGCATGGTaGTCCGGAAGATCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: TSLCTFWVNDGRSCVELSTGTAW*SGRSFC
Trigger: ACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGT...TGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR CCA 90 bp CTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCCGAACTGGAACAGCATaGTGGTCCGGAAGATCTTTT +
Preference number: 4 (lower is better)
Translates to: LCTFWVNDGRSCVELSKCRTGTA*WSGRSF
Trigger: AAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCG...GCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR CCA 90 bp CATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGAAGCCATGTTGTAAATaGCAATGCCGATCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: HWRGRRIDRNSSNVEFLLKPCCK*QCRSPP
Trigger: AGGAGGAGATCGGCATTGCCATTTACAACATGGCTT...CAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCGCTAGTCAGGAACTCTaGAAGAAAGGCTGCAAAGAA +
Preference number: 4 (lower is better)
Translates to: KAIGGAGGSTETVPMSNFASQEL*KKGCKE
Trigger: TTCTTTGCAGCCTTTCTTCCAGAGTTCCTGACTAGC...GAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp ACCAGCCTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAGAACGTTTTTCTGATTaGCATCCACACCATCACAGC +
Preference number: 4 (lower is better)
Translates to: TSLCTFWVNDGRSCVELSERFSD*HPHHHS
Trigger: GCTGTGATGGTGTGGATGCCAATCAGAAAAACGTTC...TGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000168564.2
CDS-3UTR TCA 90 bp CATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGAGAAGAGATTTTGTTTaGACAGGTGGATGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: HWRGRRIDRNSSNVEFLLRRDFV*TGGCQA
Trigger: AGCCTGACATCCACCTGTTCAAACAAAATCTCTTCT...CAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR TCA 90 bp ACCAGCCTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAGAAGAGATTTTGTTTaGACAGGTGGATGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: TSLCTFWVNDGRSCVELSRRDFV*TGGCQA
Trigger: AGCCTGACATCCACCTGTTCAAACAAAATCTCTTCT...TGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAGGCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR TCA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGAGAAGAGATTTTGTTTaGACAGGTGGATGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQRRDFV*TGGCQA
Trigger: AGCCTGACATCCACCTGTTCAAACAAAATCTCTTCT...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000171861.8
CDS-3UTR CCA 90 bp CTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCAAGCCATGTTGTAAATaGCAATGCCGATCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: LCTFWVNDGRSCVELSKCKPCCK*QCRSPP
Trigger: AGGAGGAGATCGGCATTGCCATTTACAACATGGCTT...GCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS-3UTR CCA 90 bp CTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCGCTAGTCAGGAACTCTaGAAGAAAGGCTGCAAAGAA +
Preference number: 4 (lower is better)
Translates to: LCTFWVNDGRSCVELSKCASQEL*KKGCKE
Trigger: TTCTTTGCAGCCTTTCTTCCAGAGTTCCTGACTAGC...GCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166719.8
ENSMUST00000168564.2
CDS-3UTR CCA 90 bp GCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGAAGAAAGGTTTGTaGTATAGTTTCTGCTTCGTG +
Preference number: 4 (lower is better)
Translates to: AIGGAGGSTETVPMSNFSWKKGL*YSFCFV
Trigger: CACGAAGCAGAAACTATACCACAAACCTTTCTTCCA...GGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171861.8
3UTR CAA 72 bp ACGAACTGGAACAGCATGGTGGTCCGGAAGATCTTTTaGTGGTATAGTTTCTGCTTCGTGTTCAGAGTCTCC +
Preference number: 4 (lower is better)
Translates to: TNWNSMVVRKIF*WYSFCFVFRVS
Trigger: GGAGACTCTGAACACGAAGCAGAAACTATACCACAAAAAGATCTTCCGGACCACCATGCTGTTCCAGTTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR GCA 90 bp CATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGTCCTTTCATTGGTTGTaGAGTCATGGAAAAATTCCG +
Preference number: 4 (lower is better)
Translates to: HWRGRRIDRNSSNVEFLLSFHWL*SHGKIP
Trigger: CGGAATTTTTCCATGACTGCACAACCAATGAAAGGA...CAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp CCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTTCCTTTCATTGGTTGTaGAGTCATGGAAAAATTCCG +
Preference number: 4 (lower is better)
Translates to: PLEGQEDRQKQFQCRISPSFHWL*SHGKIP
Trigger: CGGAATTTTTCCATGACTGCACAACCAATGAAAGGA...AGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR GCA 90 bp CCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTCATAGTCATTCCTTGTaGTGGACAGAAAATATAAGC +
Preference number: 4 (lower is better)
Translates to: PLEGQEDRQKQFQCRISPHSHSL*WTENIS
Trigger: GCTTATATTTTCTGTCCAGCACAAGGAATGACTATG...AGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CCA 90 bp AGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTAGTCATTCCTTGTGCTaGACAGAAAATATAAGCAGA +
Preference number: 4 (lower is better)
Translates to: RPLEGQEDRQKQFQCRISSHSLC*TENISR
Trigger: TCTGCTTATATTTTCTGTCCAGCACAAGGAATGACT...AGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS GCA 90 bp GGGGGCAGTAGCACTGGGCTTCAGGCTGTGGTAGTCCCGGGAGAGTaGAGAGATGAGGCTGGCATGGTTGATCGAGCGCAGAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: GGSSTGLQAVVVPGE*RDEAGMVDRAQRPL
Trigger: CAGTGGCCTCTGCGCTCGATCAACCATGCCAGCCTCATCTCTGCACTCTCCCGGGACTACCACAGCCTGAAGCCCAGTGCTACTGCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000165608.2
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAGAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAATGAGGCTGGCATGGTaGATCGAGCGCAGAGGCCAC +
Preference number: 5 (lower is better)
Translates to: ERAEAGHLLRAHQSREWSMRLAW*IERRGH
Trigger: GTGGCCTCTGCGCTCGATCAACCATGCCAGCCTCAT...TGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTGGGGAGGAAGGGCTaGAACACCTGGCCAGGCTCC +
Preference number: 5 (lower is better)
Translates to: RPLAQGTPIQRVVKACHRLGRKG*NTWPGS
Trigger: GGAGCCTGGCCAGGTGTTCAAGCCCTTCCTCCCCAG...TCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGATCAAACAGCTCAGCCTaGACATCAGGGGACGGGCGC +
Preference number: 5 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGSNSSA*TSGDGR
Trigger: GCGCCCGTCCCCTGATGTCAAGGCTGAGCTGTTTGA...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGAGAACTGGGAACAGGGTaGAGAAGGCGTGTGTGGGAA +
Preference number: 5 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGELGTG*RRRVWE
Trigger: TTCCCACACACGCCTTCTCAACCCTGTTCCCAGTTC...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGCACTCTCAGGAAGATTaGGCCATGGAAGGAGCAAGG +
Preference number: 5 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKHSQED*AMEGAR
Trigger: CCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGTG...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCCTGGGGAGGAAGGGCTaGAACACCTGGCCAGGCTCC +
Preference number: 5 (lower is better)
Translates to: RLQGHWRGRRIDRNSSNVLGRKG*NTWPGS
Trigger: GGAGCCTGGCCAGGTGTTCAAGCCCTTCCTCCCCAG...GACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGGTCCCGATCCATCTaGAAATTCCGCCCCAGAACG +
Preference number: 5 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHRSRSI*KFRPRT
Trigger: CGTTCTGGGGCGGAATTTCAAGATGGATCGGGACCT...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AAGGCTTGTCACAGACTTCCGTGGCACAGGTGCAGGTGGTGTAGGTGGTGGTGGCAGCAGCAACTTGTCTaGGACCTTGGTGCTGATGAG +
Preference number: 5 (lower is better)
Translates to: KACHRLPWHRCRWCRWWWQQQLV*DLGADE
Trigger: CTCATCAGCACCAAGGTCCAAGACAAGTTGCTGCTG...CCACCACCACCTACACCACCTGCACCTGTGCCACGGAAGTCTGTGACAAGCCTT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGTCAAACAGCTCAGCCTaGACATCAGGGGACGGGCGC +
Preference number: 5 (lower is better)
Translates to: EGQEDRQKQFQCRISPGLSNSSA*TSGDGR
Trigger: GCGCCCGTCCCCTGATGTCAAGGCTGAGCTGTTTGA...CAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS GCA 90 bp AGTGCAGAGATGAGGCTGGCATGGTTGATCGAGCGCAGAGGCCACTaGTGCTCACTCTCAGGAAGATTTGGCCATGGAAGGAGCAAGGTA +
Preference number: 5 (lower is better)
Translates to: SAEMRLAWLIERRGH*CSLSGRFGHGRSKV
Trigger: TACCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCGCTCGATCAACCATGCCAGCCTCATCTCTGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp CTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGAGGTCCCGATCCATCTaGAAATTCCGCCCCAGAACG +
Preference number: 5 (lower is better)
Translates to: LAQGTPIQRVVKACHRLPRSRSI*KFRPRT
Trigger: CGTTCTGGGGCGGAATTTCAAGATGGATCGGGACCT...CGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS GCA 90 bp GCAGAGATGAGGCTGGCATGGTTGATCGAGCGCAGAGGCCACTGCTaGTCACTCTCAGGAAGATTTGGCCATGGAAGGAGCAAGGTATTA +
Preference number: 5 (lower is better)
Translates to: AEMRLAWLIERRGHC*SLSGRFGHGRSKVL
Trigger: TAATACCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCGCTCGATCAACCATGCCAGCCTCATCTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS CCA 90 bp CGAGCGCAGAGGCCACTGCTGCTCACTCTCAGGAAGATTTGGCCATaGAAGGAGCAAGGTATTAGAAAGTGCACGGCAAACCAACACCTG +
Preference number: 5 (lower is better)
Translates to: RAQRPLLLTLRKIWP*KEQGIRKCTANQHL
Trigger: CAGGTGTTGGTTTGCCGTGCACTTTCTAATACCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCGCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp TTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTGAACTGGGAACAGGGTaGAGAAGGCGTGTGTGGGAA +
Preference number: 5 (lower is better)
Translates to: LLRAHQSREWSRLVTDFRELGTG*RRRVWE
Trigger: TTCCCACACACGCCTTCTCAACCCTGTTCCCAGTTC...ACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGCCATACAGAGTAACTTaGACCAACCTCTCCACAACT +
Preference number: 5 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKPYRVT*TNLSTT
Trigger: AGTTGTGGAGAGGTTGGTCAAAGTTACTCTGTATGG...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACACTCTCAGGAAGATTaGGCCATGGAAGGAGCAAGG +
Preference number: 5 (lower is better)
Translates to: RPLAQGTPIQRVVKACHRHSQED*AMEGAR
Trigger: CCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGTG...TCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AAGGTCATGAGACTTATGAACCAGGACCTGGAGCAGCACGTTCACGAACTGGAAATGAGGCTGGCATGGTaGATCGAGCGCAGAGGCCAC +
Preference number: 5 (lower is better)
Translates to: KVMRLMNQDLEQHVHELEMRLAW*IERRGH
Trigger: GTGGCCTCTGCGCTCGATCAACCATGCCAGCCTCAT...TTCCAGTTCGTGAACGTGCTGCTCCAGGTCCTGGTTCATAAGTCTCATGACCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR CAA 90 bp CAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTATGAGGCTGGCATGGTaGATCGAGCGCAGAGGCCAC +
Preference number: 5 (lower is better)
Translates to: QGHWRGRRIDRNSSNVEFMRLAW*IERRGH
Trigger: GTGGCCTCTGCGCTCGATCAACCATGCCAGCCTCAT...AAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp TTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTGCGAGGACAGTGGACTaGAAGAAGTACCGCCAGTTG +
Preference number: 5 (lower is better)
Translates to: LLRAHQSREWSRLVTDFRARTVD*KKYRQL
Trigger: CAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCGC...ACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCGAGGACAGTGGACTaGAAGAAGTACCGCCAGTTG +
Preference number: 5 (lower is better)
Translates to: EGQEDRQKQFQCRISPGLARTVD*KKYRQL
Trigger: CAACTGGCGGTACTTCTTCAAGTCCACTGTCCTCGC...CAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAGGGCAGAGGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGATAGGCACACAGTTCTaGGACATGAGTTCATTGATG +
Preference number: 5 (lower is better)
Translates to: EGRGRPLAQGTPIQRVVKIGTQF*DMSSLM
Trigger: CATCAATGAACTCATGTCCAAGAACTGTGTGCCTAT...CTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCCTCTGCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGAGGGGACCATACAGAGTAACTTaGACCAACCTCTCCACAACT +
Preference number: 5 (lower is better)
Translates to: NSSNVEFLLGWLGQERRGPYRVT*TNLSTT
Trigger: AGTTGTGGAGAGGTTGGTCAAAGTTACTCTGTATGG...TCCCCTCCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCACAGCAGCAACTTGTCTaGGACCTTGGTGCTGATGAG +
Preference number: 5 (lower is better)
Translates to: EDRQKQFQCRISPGLAGPQQQLV*DLGADE
Trigger: CTCATCAGCACCAAGGTCCAAGACAAGTTGCTGCTG...TGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AACACCTTCTGCACTGCAGGGATACTGATCAGAAAGACAGGCCGCACGGTGGTGTCAGCCTGTGTCCTGTaGAGAACTGCTTCCTTGTCT +
Preference number: 5 (lower is better)
Translates to: NTFCTAGILIRKTGRTVVSACVL*RTASLS
Trigger: AGACAAGGAAGCAGTTCTCAACAGGACACAGGCTGA...CACCACCGTGCGGCCTGTCTTTCTGATCAGTATCCCTGCAGTGCAGAAGGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166538.2
CDS-3UTR CAA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGGCCTCCCGATCCATCTaGAAATTCCGCCCCAGAACG +
Preference number: 5 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQASRSI*KFRPRT
Trigger: CGTTCTGGGGCGGAATTTCAAGATGGATCGGGAGGC...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
CDS-3UTR CAA 90 bp GACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGGAGCGGTCTCCAAGCTCCTACTaGCTGGGCAAAGTTATTAAG +
Preference number: 5 (lower is better)
Translates to: DRNSSNVEFLLGWLGQERSPSSY*LGKVIK
Trigger: CTTAATAACTTTGCCCAGCAAGTAGGAGCTTGGAGA...CCGCTCCTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp TTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACAGACTTCCGTAACTTGTCTTGGACCTaGGTGCTGATGAGAGGTGTG +
Preference number: 5 (lower is better)
Translates to: LLRAHQSREWSRLVTDFRNLSWT*VLMRGV
Trigger: CACACCTCTCATCAGCACCAAGGTCCAAGACAAGTT...ACGGAAGTCTGTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCAATGATGGGGTACACTaGCTCCATGCACAGCGCGAT +
Preference number: 5 (lower is better)
Translates to: AIGGAGGSTETVPMSNFSNDGVH*LHAQRD
Trigger: ATCGCGCTGTGCATGGAGCAAGTGTACCCCATCATT...GGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS TCA 90 bp AAAAGCTGGAAAGAGGGCCAGGGAGACCTGAACAGATTCCTGCAGTaGCTGGTAGCAGATCTGTCGAGACTTGGTGGATTCCCCAGAAAT +
Preference number: 5 (lower is better)
Translates to: KSWKEGQGDLNRFLQ*LVADLSRLGGFPRN
Trigger: ATTTCTGGGGAATCCACCAAGTCTCGACAGATCTGCTACCAGTCACTGCAGGAATCTGTTCAGGTCTCCCTGGCCCTCTTTCCAGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000165660.2
ENSMUST00000168189.8
CDS GCA 90 bp CATGGAAGGAGCAAGGTATTAGAAAGTGCACGGCAAACCAACACCTaGGCCTTATCTGTTAGACGCTGGGCAGAGGCATCAATGATGCTG +
Preference number: 5 (lower is better)
Translates to: HGRSKVLESARQTNT*ALSVRRWAEASMML
Trigger: CAGCATCATTGATGCCTCTGCCCAGCGTCTAACAGATAAGGCGCAGGTGTTGGTTTGCCGTGCACTTTCTAATACCTTGCTCCTTCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGGGCCAGTTGGACATGAGTTCATaGATGCAGGACATGGCCAAG +
Preference number: 5 (lower is better)
Translates to: RIDRNSSNVEFLLGWLGQLDMSS*MQDMAK
Trigger: CTTGGCCATGTCCTGCATCAATGAACTCATGTCCAA...CTGGCCCAGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGCTGGCTGCATCAATGATGCTGTaGAACACCTTCTGCACTGCA +
Preference number: 5 (lower is better)
Translates to: GQEDRQKQFQCRISPGLAASMML*NTFCTA
Trigger: TGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGC...AGCCAGCCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GGCAGGCCACTTGCTCAGGGCACACCAATCCAGAGAGTGGTCAAGGCTTGTCACTCTCTGGTAAACATGTaGAGGAAAGTCTGTATGATC +
Preference number: 5 (lower is better)
Translates to: GRPLAQGTPIQRVVKACHSLVNM*RKVCMI
Trigger: GATCATACAGACTTTCCTCAACATGTTTACCAGAGA...GTGACAAGCCTTGACCACTCTCTGGATTGGTGTGCCCTGAGCAAGTGGCCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp CCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTAATGATGGGGTACACTaGCTCCATGCACAGCGCGAT +
Preference number: 5 (lower is better)
Translates to: PLEGQEDRQKQFQCRISPNDGVH*LHAQRD
Trigger: ATCGCGCTGTGCATGGAGCAAGTGTACCCCATCATT...AGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp CTGTGCACATTCTGGGTGAACGATGGTAGGTCCTGTGTTGAACTTTCAAAGTGCGCCATCCGATCCATCTaGAAATTCCGCCCCAGAACG +
Preference number: 5 (lower is better)
Translates to: LCTFWVNDGRSCVELSKCAIRSI*KFRPRT
Trigger: CGTTCTGGGGCGGAATTTCAAGATGGATCGGATGGC...GCACTTTGAAAGTTCAACACAGGACCTACCATCGTTCACCCAGAATGTGCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168564.2
CDS TCA 90 bp GGTAGGTCCCGATCCATCTTGAAATTCCGCCCCAGAACGTTTTTCTaGTTGGCATCCACACCATCACAGCTAGTCAGGAACTCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: GRSRSILKFRPRTFF*LASTPSQLVRNSGR
Trigger: TCTTCCAGAGTTCCTGACTAGCTGTGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGGGCGGAATTTCAAGATGGATCGGGACCTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp TTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTCCTGGGTTGGACATGAGTTCATaGATGCAGGACATGGCCAAG +
Preference number: 5 (lower is better)
Translates to: LEGQEDRQKQFQCRISPGLDMSS*MQDMAK
Trigger: CTTGGCCATGTCCTGCATCAATGAACTCATGTCCAA...CCCAGGAGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp GAAACTCTACCAGTGTCAAATGAACTCCAAAACCTGCTGTGCTGGAGGCAGCAGAACTTGTCTTGGACCTaGGTGCTGATGAGAGGTGTG +
Preference number: 5 (lower is better)
Translates to: ETLPVSNELQNLLCWRQQNLSWT*VLMRGV
Trigger: CACACCTCTCATCAGCACCAAGGTCCAAGACAAGTT...CTGCTGCCTCCAGCACAGCAGGTTTTGGAGTTCATTTGACACTGGTAGAGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS TCA 90 bp TATGCCTCCCGATCCATCTTGAAATTCCGCCCCAGAACGTTTTTCTaGTTGGCATCCACACCATCACAGCTAGTCAGGAACTCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: YASRSILKFRPRTFF*LASTPSQLVRNSGR
Trigger: TCTTCCAGAGTTCCTGACTAGCTGTGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGGGCGGAATTTCAAGATGGATCGGGAGGCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166719.8
CDS-3UTR CAA 90 bp AGAGACTTCAAGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCTCCAAGCTCCTACTaGCTGGGCAAAGTTATTAAG +
Preference number: 5 (lower is better)
Translates to: RDFKAIGGAGGSTETVPMSPSSY*LGKVIK
Trigger: CTTAATAACTTTGCCCAGCAAGTAGGAGCTTGGAGA...CATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCTTGAAGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS-3UTR CAA 90 bp AGGCCATTGGAGGGGCAGGAGGATCGACAGAAACAGTTCCAATGTCGAATTTCTGCATCAATGATGCTGTaGAACACCTTCTGCACTGCA +
Preference number: 5 (lower is better)
Translates to: RPLEGQEDRQKQFQCRISASMML*NTFCTA
Trigger: TGCAGTGCAGAAGGTGTTCAACAGCATCATTGATGC...AGAAATTCGACATTGGAACTGTTTCTGTCGATCCTCCTGCCCCTCCAATGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS CCA 90 bp CCTGAACAGATTCCTGCAGTGACTGGTAGCAGATCTGTCGAGACTTaGTGGATTCCCCAGAAATATTCTCCACGATATCTTCCAAGACAC +
Preference number: 5 (lower is better)
Translates to: PEQIPAVTGSRSVET*WIPQKYSPRYLPRH
Trigger: GTGTCTTGGAAGATATCGTGGAGAATATTTCTGGGGAATCCACCAAGTCTCGACAGATCTGCTACCAGTCACTGCAGGAATCTGTTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000165660.2
ENSMUST00000168189.8
CDS CCA 90 bp GTTTTTCTGATTGGCATCCACACCATCACAGCTAGTCAGGAACTCTaGAAGAAAGGCTGCAAAGAAGCCATCAAAGTCGACAGAAGCCAT +
Preference number: 5 (lower is better)
Translates to: VFLIGIHTITASQEL*KKGCKEAIKVDRSH
Trigger: ATGGCTTCTGTCGACTTTGATGGCTTCTTTGCAGCCTTTCTTCCAGAGTTCCTGACTAGCTGTGATGGTGTGGATGCCAATCAGAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000168564.2
CDS CCA 90 bp TCTGAACAGATTCCTGCAGTGACTGGTAGCAGATCTGTCGAGACTTaGTGGATTCCCCAGAAATATTCTCCACGATATCTTCCAAGACAC +
Preference number: 5 (lower is better)
Translates to: SEQIPAVTGSRSVET*WIPQKYSPRYLPRH
Trigger: GTGTCTTGGAAGATATCGTGGAGAATATTTCTGGGGAATCCACCAAGTCTCGACAGATCTGCTACCAGTCACTGCAGGAATCTGTTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165608.2
CDS-3UTR CAA 90 bp GTGGCACTGTTGTCAGAGGTCCTTGGCCATTTTGACTCAGGACTGATACACACGTCTCTGGTAAACATGTaGAGGAAAGTCTGTATGATC +
Preference number: 5 (lower is better)
Translates to: VALLSEVLGHFDSGLIHTSLVNM*RKVCMI
Trigger: GATCATACAGACTTTCCTCAACATGTTTACCAGAGA...CGTGTGTATCAGTCCTGAGTCAAAATGGCCAAGGACCTCTGACAACAGTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS TCA 90 bp CCAGAAATATTCTCCACGATATCTTCCAAGACACTAAGTGTCTGGTaGATAATCACTTTGGTGTCACCAAGTGGCACCTTTCTCTGGGGG +
Preference number: 5 (lower is better)
Translates to: PEIFSTISSKTLSVW*IITLVSPSGTFLWG
Trigger: CCCCCAGAGAAAGGTGCCACTTGGTGACACCAAAGTGATTATTCACCAGACACTTAGTGTCTTGGAAGATATCGTGGAGAATATTTCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000165608.2
ENSMUST00000165660.2
ENSMUST00000168189.8
CDS GCA 72 bp AGGCTGGCATGGTTGATCGAGCGCAGAGGCCACTGCTaGTCACTCTCAGGAAGATTTGGCCATGGAAGGAGC +
Preference number: 6 (lower is better)
Translates to: RLAWLIERRGHC*SLSGRFGHGRS
Trigger: GCTCCTTCCATGGCCAAATCTTCCTGAGAGTGAGCAGCAGTGGCCTCTGCGCTCGATCAACCATGCCAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS TCA 72 bp GCACGCCCATCTGTACTCGAAGGCCTCGGAACAAGGTaGGGAAGAAGCTCAGCATCTCGTCAGTCACATCTG +
Preference number: 6 (lower is better)
Translates to: ARPSVLEGLGTR*GRSSASRQSHL
Trigger: CAGATGTGACTGACGAGATGCTGAGCTTCTTCCTCACCTTGTTCCGAGGCCTTCGAGTACAGATGGGCGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS CCA 72 bp AGGCCACTGCTGCTCACTCTCAGGAAGATTTGGCCATaGAAGGAGCAAGGTATTAGAAAGTGCACGGCAAAC +
Preference number: 6 (lower is better)
Translates to: RPLLLTLRKIWP*KEQGIRKCTAN
Trigger: GTTTGCCGTGCACTTTCTAATACCTTGCTCCTTCCATGGCCAAATCTTCCTGAGAGTGAGCAGCAGTGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
CDS CAA 72 bp AATTCCATAGGCACACAGTTCTTGGACATGAGTTCATaGATGCAGGACATGGCCAAGACCCCAAGTCGGCCA +
Preference number: 6 (lower is better)
Translates to: NSIGTQFLDMSS*MQDMAKTPSRP
Trigger: TGGCCGACTTGGGGTCTTGGCCATGTCCTGCATCAATGAACTCATGTCCAAGAACTGTGTGCCTATGGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000164741.2
ENSMUST00000166540.8
ENSMUST00000168189.8
CDS TCA 72 bp CGATCCATCTTGAAATTCCGCCCCAGAACGTTTTTCTaGTTGGCATCCACACCATCACAGCTAGTCAGGAAC +
Preference number: 6 (lower is better)
Translates to: RSILKFRPRTFF*LASTPSQLVRN
Trigger: GTTCCTGACTAGCTGTGATGGTGTGGATGCCAATCAGAAAAACGTTCTGGGGCGGAATTTCAAGATGGATCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000166719.8
ENSMUST00000168189.8
ENSMUST00000168564.2
CDS CCA 72 bp CCTGCAGTGACTGGTAGCAGATCTGTCGAGACTTGGTaGATTCCCCAGAAATATTCTCCACGATATCTTCCA +
Preference number: 6 (lower is better)
Translates to: PAVTGSRSVETW*IPQKYSPRYLP
Trigger: TGGAAGATATCGTGGAGAATATTTCTGGGGAATCCACCAAGTCTCGACAGATCTGCTACCAGTCACTGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000165608.2
ENSMUST00000165660.2
ENSMUST00000168189.8
CDS CCA 72 bp ATTGGCATCCACACCATCACAGCTAGTCAGGAACTCTaGAAGAAAGGCTGCAAAGAAGCCATCAAAGTCGAC +
Preference number: 6 (lower is better)
Translates to: IGIHTITASQEL*KKGCKEAIKVD
Trigger: GTCGACTTTGATGGCTTCTTTGCAGCCTTTCTTCCAGAGTTCCTGACTAGCTGTGATGGTGTGGATGCCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8
ENSMUST00000168564.2
CDS CCA 72 bp ATTCCTGCAGTGACTGGTAGCAGATCTGTCGAGACTTaGTGGATTCCCCAGAAATATTCTCCACGATATCTT +
Preference number: 6 (lower is better)
Translates to: IPAVTGSRSVET*WIPQKYSPRYL
Trigger: AAGATATCGTGGAGAATATTTCTGGGGAATCCACCAAGTCTCGACAGATCTGCTACCAGTCACTGCAGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000009344.16
ENSMUST00000165608.2
ENSMUST00000165660.2
ENSMUST00000168189.8
CDS CAA 72 bp TTATTAAGAAGCTCCTCTATCTCCCGCTTCCTTTCATaGGTTGTGCAGTCATGGAAAAATTCCGTCATCAGG +
Preference number: 6 (lower is better)
Translates to: LLRSSSISRFLS*VVQSWKNSVIR
Trigger: CCTGATGACGGAATTTTTCCATGACTGCACAACCAATGAAAGGAAGCGGGAGATAGAGGAGCTTCTTAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000009344.16
ENSMUST00000168189.8