RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for XPNPEP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037005

Ensembl transcript IDs: ENSMUST00000077775.11, ENSMUST00000114998.8, ENSMUST00000115000.4

Found 269 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACCCATCTGGCCCCATCATCTCCCAACCTCGTCCCCTAACCAAGTaGAGAGTCTCTTCAGGCAGGCCACACCTTCTGTCTGAAAGTCAG +
Preference number: 1 (lower is better)
Translates to: NPSGPIISQPRPLTK*RVSSGRPHLLSESQ
Trigger: CTGACTTTCAGACAGAAGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGAGATGATGGGGCCAGATGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR-3UTR TCA 90 bp TCCCAACCTCGTCCCCTAACCAAGTGCAGAGTCTCTTCAGGCAGGCCACACCTTCACTGTAGCAGGCTCTaGTATCCCAGGGCCCAGGGG +
Preference number: 2 (lower is better)
Translates to: SQPRPLTKCRVSSGRPHLHCSRL*YPRAQG
Trigger: CCCCTGGGCCCTGGGATATCAGAGCCTGCTACAGTG...AAGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR-3UTR CCA 90 bp CTCCCAACCTCGTCCCCTAACCAAGTGCAGAGTCTCTTCAGGCAGGCCACACCTCTGGGATCTGGCCAGTaGCTTCAAGGTGGTGAGCCA +
Preference number: 2 (lower is better)
Translates to: LPTSSPNQVQSLFRQATPLGSGQ*LQGGEP
Trigger: TGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAG...AGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR-3UTR CCA 90 bp CTAGCAGGATGTGAGCCCAGGTGGCTAACGGCTAGACAGGGCCAGACCAGAGAAGCTACTGTAGGCCTGTaGGTAAGAGTGGCCAGAGGC +
Preference number: 2 (lower is better)
Translates to: LAGCEPRWLTARQGQTREATVGL*VRVARG
Trigger: GCCTCTGGCCACTCTTACCCACAGGCCTACAGTAGC...TTCTCTGGTCTGGCCCTGTCTAGCCGTTAGCCACCTGGGCTCACATCCTGCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR-3UTR CCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGCTGGGATCTGGCCAGTaGCTTCAAGGTGGTGAGCCA +
Preference number: 2 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERLGSGQ*LQGGEP
Trigger: TGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAG...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR TCA 90 bp CCAAGCACCAGGGGAGCCTGGGATAGCCAGAGCACCTTGCCATTCCCTCCATTCGTTCCAGGCCACAGCTaGCTTCAACTTATCTGTTCT +
Preference number: 2 (lower is better)
Translates to: PSTRGAWDSQSTLPFPPFVPGHS*LQLICS
Trigger: AGAACAGATAAGTTGAAGTCAGCTGTGGCCTGGAAC...GAATGGAGGGAATGGCAAGGTGCTCTGGCTATCCCAGGCTCCCCTGGTGCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR TCA 90 bp TCCAGGCCACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGACACTGTAGCAGGCTCTaGTATCCCAGGGCCCAGGGG +
Preference number: 2 (lower is better)
Translates to: SRPQLTSTYLFSPILQMGHCSRL*YPRAQG
Trigger: CCCCTGGGCCCTGGGATATCAGAGCCTGCTACAGTG...TCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGTGGCCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR CCA 90 bp CTAGCAGGATGTGAGCCCAGGTGGCTAACGGCTAGACAGGGCCAGACCAGAGAACACCTTTTAAAAGTCTaGAGTCAGTGTGGGTGGCAA +
Preference number: 2 (lower is better)
Translates to: LAGCEPRWLTARQGQTREHLLKV*SQCGWQ
Trigger: TTGCCACCCACACTGACTCCAGACTTTTAAAAGGTG...TTCTCTGGTCTGGCCCTGTCTAGCCGTTAGCCACCTGGGCTCACATCCTGCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR-3UTR CCA 90 bp CCAAGCACCAGGGGAGCCTGGGATAGCCAGAGCACCTTGCCATTCCCTCCATTCCCCCAATACTACAAATaGGAGTTTGAGACCAGACTA +
Preference number: 2 (lower is better)
Translates to: PSTRGAWDSQSTLPFPPFPQYYK*EFETRL
Trigger: TAGTCTGGTCTCAAACTCCCATTTGTAGTATTGGGG...GAATGGAGGGAATGGCAAGGTGCTCTGGCTATCCCAGGCTCCCCTGGTGCTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR TCA 90 bp GAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCATCCCCAGACACAAGTaGACAGTCCACAGGAGAATC +
Preference number: 2 (lower is better)
Translates to: EKVEHTVWDLASGFKVVSIPRHK*TVHRRI
Trigger: GATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGAT...GCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR CCA 90 bp GCTGCGGGTTCACAGATGGGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCTGGAGTCAGTGTGGGTaGCAAAAGCTCTGGCCTTCT +
Preference number: 2 (lower is better)
Translates to: AAGSQMGRGRYTLLTEVFWSQCG*QKLWPS
Trigger: AGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCA...GAACACCTCAGTCAATAATGTGTACCTACCTCTCCCCATCTGTGAACCCGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR TCA 90 bp TGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGGACTCACTGTAGCAATCCCCAGACACAAGTaGACAGTCCACAGGAGAATC +
Preference number: 2 (lower is better)
Translates to: WVLPYRVLYFGREGLTVAIPRHK*TVHRRI
Trigger: GATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGAT...TGCTACAGTGAGTCCCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR CCA 90 bp ATGGGGGAATCAGAGTCTGCCCACACAAGGTTAAGAGGTTTTCAAAGATATGAGCAGGTGGGGATAGGATaGAGCCCTCTGGGTGTTGCC +
Preference number: 2 (lower is better)
Translates to: MGESESAHTRLRGFQRYEQVGIG*SPLGVA
Trigger: GGCAACACCCAGAGGGCTCCATCCTATCCCCACCTG...CTCATATCTTTGAAAACCTCTTAACCTTGTGTGGGCAGACTCTGATTCCCCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR-3UTR CCA 90 bp ACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGACTTCAACTTATCTGCAGGTGGGGATAGGATaGAGCCCTCTGGGTGTTGCC +
Preference number: 2 (lower is better)
Translates to: TLLTEVFSSRPQLTSTYLQVGIG*SPLGVA
Trigger: GGCAACACCCAGAGGGCTCCATCCTATCCCCACCTG...CAGATAAGTTGAAGTCAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR CCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATCCCACTCCCACTTCTTaGCCCTGGCATTCCCCTGTA +
Preference number: 2 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHPTPTS*PWHSPV
Trigger: TACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
3UTR-3UTR CCA 90 bp AATACTACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAAATACTGTCTGGGATCTaGCCAGTGGCTTCAAGGTGG +
Preference number: 2 (lower is better)
Translates to: NTTNGSLRPDYPVAFFSKILSGI*PVASRW
Trigger: CCACCTTGAAGCCACTGGCCAGATCCCAGACAGTAT...TTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGTAGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR CCA 90 bp ACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTTGAGATGGAGTCAGTGTGGGTaGCAAAAGCTCTGGCCTTCT +
Preference number: 2 (lower is better)
Translates to: TADFNLSVLPNTTNGSLRWSQCG*QKLWPS
Trigger: AGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCA...TCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR CCA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCCACCTTTTAAAAGTCTaGAGTCAGTGTGGGTGGCAA +
Preference number: 2 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSHLLKV*SQCGWQ
Trigger: TTGCCACCCACACTGACTCCAGACTTTTAAAAGGTG...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR CAA 90 bp GCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTaGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGA +
Preference number: 2 (lower is better)
Translates to: ADFNLSVLPNTTNGS*RPDYPVAFFSKYSR
Trigger: TCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR-3UTR TCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCATTCTGGGTCTTTTCTTaGAAGGTCCTTTTCCACTTG +
Preference number: 2 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPFWVFS*KVLFHL
Trigger: CAAGTGGAAAAGGACCTTTCAAGAAAAGACCCAGAA...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
3UTR GCA 72 bp CCAGCAGGTGGGGATAGGATGGAGCCCTCTGGGTGTTaGCCTATAGGGTCCTTTACTTTGGGAGAGAGGGAC +
Preference number: 3 (lower is better)
Translates to: PAGGDRMEPSGC*PIGSFTLGERD
Trigger: GTCCCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCTATCCCCACCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR GCA 72 bp GGCCCCATCATCTCCCAACCTCGTCCCCTAACCAAGTaGAGAGTCTCTTCAGGCAGGCCACACCTTCTGTCT +
Preference number: 3 (lower is better)
Translates to: GPIISQPRPLTK*RVSSGRPHLLS
Trigger: AGACAGAAGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGAGATGATGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR-3UTR CAA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGGGAGCCCTCTGGGTGTaGCCCTATAGGGTCCTTTAC +
Preference number: 3 (lower is better)
Translates to: KSLESVWVAKALAFSSRWGALWV*PYRVLY
Trigger: GTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCC...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR TCA 72 bp ATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTaGGCCATCAGTAGCCCTTGGGACATGTATGGCATA +
Preference number: 3 (lower is better)
Translates to: ILSGIWPVASRW*AISSPWDMYGI
Trigger: TATGCCATACATGTCCCAAGGGCTACTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR CCA 72 bp AGTTGTTTTAAGCATCTAGCAGGATGTGAGCCCAGGTaGCTAACGGCTAGACAGGGCCAGACCAGAGAAACC +
Preference number: 3 (lower is better)
Translates to: SCFKHLAGCEPR*LTARQGQTRET
Trigger: GGTTTCTCTGGTCTGGCCCTGTCTAGCCGTTAGCCACCTGGGCTCACATCCTGCTAGATGCTTAAAACAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
3UTR CCA 72 bp GTTCCACCTATAGGGTTGCAGACCCCTTTAACTCCTTaGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGT +
Preference number: 3 (lower is better)
Translates to: VPPIGLQTPLTP*VLSLAPPIGAC
Trigger: ACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGTCTGCAACCCTATAGGTGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
3UTR CCA 72 bp AGTATGTACATCTGGGAGAAGGTAGAACATACTGTCTaGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCAT +
Preference number: 3 (lower is better)
Translates to: SMYIWEKVEHTV*DLASGFKVVSH
Trigger: ATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCCCAGATGTACATACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR TCA 72 bp ACTCAGGACCTCTGGAAGAGCAGTGCTCTCAATCACTaGGCCATCTCTCCAGCCCTTGAAACATCTTTTGAT +
Preference number: 3 (lower is better)
Translates to: TQDLWKSSALNH*AISPALETSFD
Trigger: ATCAAAAGATGTTTCAAGGGCTGGAGAGATGGCTCAGTGATTGAGAGCACTGCTCTTCCAGAGGTCCTGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
3UTR-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTCTATTCAATTTAGTTTaGAGCCCTTTTCTTCATCGC +
Preference number: 3 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVLFNLV*SPFLHR
Trigger: GCGATGAAGAAAAGGGCTCAAAACTAAATTGAATAG...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
3UTR-3UTR CAA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCACTTCTGGGTCTTTTCTaGAAAGGTCCTTTTCCACTT +
Preference number: 3 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPLLGLF*KGPFPL
Trigger: AAGTGGAAAAGGACCTTTCAAGAAAAGACCCAGAAG...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
3UTR-3UTR CAA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCACCATCTCTCCAGCCCTaGAAACATCTTTTGATTTTG +
Preference number: 3 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPPSLQP*KHLLIL
Trigger: CAAAATCAAAAGATGTTTCAAGGGCTGGAGAGATGG...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
3UTR-3UTR CAA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCAGTCTCTTCATGTCTTTaGCTCATTTCTCCCAGTTTT +
Preference number: 3 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPVSSCL*LISPSF
Trigger: AAAACTGGGAGAAATGAGCAAAAGACATGAAGAGAC...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp CCAAGCACCAGGGGAGCCTGGGATAGCCAGAGCACCTTGCCATTCCCTCCATTCAGGGGCTCCGTGTGCTaGTCCAACCATGCAAACTCC +
Preference number: 4 (lower is better)
Translates to: PSTRGAWDSQSTLPFPPFRGSVC*SNHANS
Trigger: GGAGTTTGCATGGTTGGAGCAGCACACGGAGCCCCT...GAATGGAGGGAATGGCAAGGTGCTCTGGCTATCCCAGGCTCCCCTGGTGCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp CCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGAGAGCCCCACTTGCTTaGAGCTCCCTGGCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: PSPAGGDRMEPSGCCPIGRAPLA*SSLASL
Trigger: CAAGGAAGCCAGGGAGCTCCAAGCAAGTGGGGCTCT...CCCTATAGGGCAACACCCAGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCACTGGGGGCCTCTCTaGCCCCCATGCCACGTCAAC +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLHWGPL*PPCHVN
Trigger: GTTGACGTGGCATGGGGGTCAGAGAGGCCCCCAGTG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp CCAAGCACCAGGGGAGCCTGGGATAGCCAGAGCACCTTGCCATTCCCTCCATTCATCGGTCCAGACAGCTaGTTTCCCCATGGTCACCAC +
Preference number: 4 (lower is better)
Translates to: PSTRGAWDSQSTLPFPPFIGPDS*FPHGHH
Trigger: GTGGTGACCATGGGGAAAGCAGCTGTCTGGACCGAT...GAATGGAGGGAATGGCAAGGTGCTCTGGCTATCCCAGGCTCCCCTGGTGCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TACAGCAGACAGGCTACTGTAGGCCTGTGGGTAAGAGTGGCCAGAGGCACCTTTGAGAGGTCCAGGAGATaGTATGAGGGGCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: YSRQATVGLWVRVARGTFERSRR*YEGPWL
Trigger: CAGCCAGGGCCCCTCATATCATCTCCTGGACCTCTC...AAAGGTGCCTCTGGCCACTCTTACCCACAGGCCTACAGTAGCCTGTCTGCTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp CCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGCTGTTGGCGGAGGGCTaGAAGCCGCATTGTTGTATT +
Preference number: 4 (lower is better)
Translates to: PSPAGGDRMEPSGCCPIGLLAEG*KPHCCI
Trigger: AATACAACAATGCGGCTTGCAGCCCTCCGCCAACAG...CCCTATAGGGCAACACCCAGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGCGTCCCGCACGTGGCTaGTCTTCAAAAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: KSLESVWVAKALAFSSRWRPARG*SSKGPA
Trigger: AGCAGGCCCTTTTGAAGAGCAGCCACGTGCGGGACG...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCGTCCCGCACGTGGCTaGTCTTCAAAAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLRPARG*SSKGPA
Trigger: AGCAGGCCCTTTTGAAGAGCAGCCACGTGCGGGACG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGAGCAGCTGGCGACGCTaGAGCTCTGGGCCTACATTC +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGESSWRR*SSGPTF
Trigger: GAATGTAGGCCCAGAGCTGCAGCGTCGCCAGCTGCT...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGACAGCGTCCCGCACGTaGCTGCTCTTCAAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: VEHTVWDLASGFKVVSHQTASRT*LLFKRA
Trigger: GGCCCTTTTGAAGAGCAGCCACGTGCGGGACGCTGT...CTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCACAGCGTCCCGCACGTaGCTGCTCTTCAAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: EKVEHTVWDLASGFKVVSTASRT*LLFKRA
Trigger: GGCCCTTTTGAAGAGCAGCCACGTGCGGGACGCTGT...GCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCGAGAGGTCCAGGAGATaGTATGAGGGGCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: EANESPDTSEQSTGESGAERSRR*YEGPWL
Trigger: CAGCCAGGGCCCCTCATATCATCTCCTGGACCTCTC...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGCCCACTGGCCACTCATaGACACAGAGGAAGTTGCCA +
Preference number: 4 (lower is better)
Translates to: KSLESVWVAKALAFSSRWPTGHS*TQRKLP
Trigger: TGGCAACTTCCTCTGTGTGCATGAGTGGCCAGTGGG...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGGTGCTGCTCCAACCATaGAAACTCCTCCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: KSLESVWVAKALAFSSRWVLLQP*KLLQQL
Trigger: CAGCTGCTGGAGGAGTTTGCATGGTTGGAGCAGCAC...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGAAGGTACTTGGGCTCTaGGTAGCTCCAGGCACATGC +
Preference number: 4 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERKVLGL*VAPGTC
Trigger: GCATGTGCCTGGAGCTACCCAGAGCCCAAGTACCTT...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCCTTCCAAGGTACTTaGGCTCTGGGTAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGEPFQGT*ALGSSR
Trigger: CCTGGAGCTACCCAGAGCCCAAGTACCTTGGAAGGG...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCCCTTCCAAGGTACTTaGGCTCTGGGTAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLPFQGT*ALGSSR
Trigger: CCTGGAGCTACCCAGAGCCCAAGTACCTTGGAAGGG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGCATCCACCGTGCCTTTaGGCACGTTCTTCTCCAACC +
Preference number: 4 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERHPPCL*ARSSPT
Trigger: GGTTGGAGAAGAACGTGCCCAAAGGCACGGTGGATG...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGTACCTGCAGACCCTGTaGAGCCTGAAATCCACTCTC +
Preference number: 4 (lower is better)
Translates to: KSLESVWVAKALAFSSRWYLQTL*SLKSTL
Trigger: GAGAGTGGATTTCAGGCTTCACAGGGTCTGCAGGTA...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGTAGCCCTTCAGGTTCAATGGAAGTaGACATGCCCTTGGCCATGG +
Preference number: 4 (lower is better)
Translates to: YCLGSGQWLQGGEPSVALQVQWK*TCPWPW
Trigger: CCATGGCCAAGGGCATGTTCACTTCCATTGAACCTG...AAGGGCTACTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp CTCCCAACCTCGTCCCCTAACCAAGTGCAGAGTCTCTTCAGGCAGGCCACACCTCTCTTCAAAAGGGCCTaGTCCTTGCTGTTCTTCACA +
Preference number: 4 (lower is better)
Translates to: LPTSSPNQVQSLFRQATPLFKRA*SLLFFT
Trigger: TGTGAAGAACAGCAAGGAGCAGGCCCTTTTGAAGAG...AGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR GCA 90 bp GGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGTTCAGGTACTGGAGCTaGTCTGGGGACAGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: GRGRYTLLTEVFSSRPQLFRYWS*SGDSSL
Trigger: CAGGCTGCTGTCCCCAGAGCAGCTCCAGTACCTGAA...CAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGTGTACCTACCTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGAGGGGCTCCGTGTGCTaGTCCAACCATGCAAACTCC +
Preference number: 4 (lower is better)
Translates to: GRGRYTLLTEVFSSRPQLRGSVC*SNHANS
Trigger: GGAGTTTGCATGGTTGGAGCAGCACACGGAGCCCCT...CAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGTGTACCTACCTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGAAGGTACTTGGGCTCTaGGTAGCTCCAGGCACATGC +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLKVLGL*VAPGTC
Trigger: GCATGTGCCTGGAGCTACCCAGAGCCCAAGTACCTT...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp TACAGCAGACAGGCTACTGTAGGCCTGTGGGTAAGAGTGGCCAGAGGCACCTTTGTGTGCATCCGTGTCTaGGATGATGTAGGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: YSRQATVGLWVRVARGTFVCIRV*DDVGRE
Trigger: CTCTCTGCCTACATCATCCCAGACACGGATGCACAC...AAAGGTGCCTCTGGCCACTCTTACCCACAGGCCTACAGTAGCCTGTCTGCTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCAGCTGCTTTCCCCATaGTCACCACAGCAGTACCTG +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGEQLLSP*SPQQYL
Trigger: CAGGTACTGCTGTGGTGACCATGGGGAAAGCAGCTG...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCAGCTGCTTTCCCCATaGTCACCACAGCAGTACCTG +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLQLLSP*SPQQYL
Trigger: CAGGTACTGCTGTGGTGACCATGGGGAAAGCAGCTG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGAAGGTCCAGGAAGCTTaGGACTACCAGACTGACCCA +
Preference number: 4 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERKVQEA*DYQTDP
Trigger: TGGGTCAGTCTGGTAGTCCCAAGCTTCCTGGACCTT...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGGCGCTCAGGGCTGGTTaGACAGTTTCTCACATCTTC +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGEALRAG*TVSHIF
Trigger: GAAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGC...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGGCGCTCAGGGCTGGTTaGACAGTTTCTCACATCTTC +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLALRAG*TVSHIF
Trigger: GAAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGC...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGAGACCCTGTGAAGCCTaGAATCCACTCTCGCCTCTT +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLRPCEA*NPLSPL
Trigger: AAGAGGCGAGAGTGGATTTCAGGCTTCACAGGGTCT...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCCACTGGGGGCCTCTCTaGCCCCCATGCCACGTCAAC +
Preference number: 4 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSHWGPL*PPCHVN
Trigger: GTTGACGTGGCATGGGGGTCAGAGAGGCCCCCAGTG...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp AAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGCACTGGGGGCCTCTCTaGCCCCCATGCCACGTCAAC +
Preference number: 4 (lower is better)
Translates to: KWEFETRLPSSFLLQIQQHWGPL*PPCHVN
Trigger: GTTGACGTGGCATGGGGGTCAGAGAGGCCCCCAGTG...CTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGCAGGTACATCTCATCTaGGGACAGCTTACGGTGCAG +
Preference number: 4 (lower is better)
Translates to: VEHTVWDLASGFKVVSHQQVHLI*GQLTVQ
Trigger: CTGCACCGTAAGCTGTCCTCAGATGAGATGTACCTG...CTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCAGGTTCAATGGAAGTaGACATGCCCTTGGCCATGG +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLQVQWK*TCPWPW
Trigger: CCATGGCCAAGGGCATGTTCACTTCCATTGAACCTG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGAGAGGAAGTTGCCAATaGCATGGCCTGTCCCATGAC +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGERGSCQ*HGLSHD
Trigger: GTCATGGGACAGGCCATGGCATTGGCAACTTCCTCT...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGAGAGGAAGTTGCCAATaGCATGGCCTGTCCCATGAC +
Preference number: 4 (lower is better)
Translates to: VEHTVWDLASGFKVVSHQRGSCQ*HGLSHD
Trigger: GTCATGGGACAGGCCATGGCATTGGCAACTTCCTCT...CTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCGCACACAGAGGAAGTTaGCAATGCCATGGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: EANESPDTSEQSTGESGAAHRGS*QCHGLS
Trigger: GGACAGGCCATGGCATTGGCAACTTCCTCTGTGTGC...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCCCCACTGGCCACTCATaGACACAGAGGAAGTTGCCA +
Preference number: 4 (lower is better)
Translates to: EANESPDTSEQSTGESGAPTGHS*TQRKLP
Trigger: TGGCAACTTCCTCTGTGTGCATGAGTGGCCAGTGGG...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGAGCAGCTGGCGACGCTaGAGCTCTGGGCCTACATTC +
Preference number: 4 (lower is better)
Translates to: GSLRPDYPVAFFSKYSRQSSWRR*SSGPTF
Trigger: GAATGTAGGCCCAGAGCTGCAGCGTCGCCAGCTGCT...CTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GCTGCGGGTTCACAGATGGGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCAAGGTACTTGGGCTCTaGGTAGCTCCAGGCACATGC +
Preference number: 4 (lower is better)
Translates to: AAGSQMGRGRYTLLTEVFKVLGL*VAPGTC
Trigger: GCATGTGCCTGGAGCTACCCAGAGCCCAAGTACCTT...GAACACCTCAGTCAATAATGTGTACCTACCTCTCCCCATCTGTGAACCCGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCCAGCTGCTTTCCCCATaGTCACCACAGCAGTACCTG +
Preference number: 4 (lower is better)
Translates to: EANESPDTSEQSTGESGAQLLSP*SPQQYL
Trigger: CAGGTACTGCTGTGGTGACCATGGGGAAAGCAGCTG...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp AAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCATCCACCGTGCCTTTaGGCACGTTCTTCTCCAACC +
Preference number: 4 (lower is better)
Translates to: KVEHTVWDLASGFKVVSHHPPCL*ARSSPT
Trigger: GGTTGGAGAAGAACGTGCCCAAAGGCACGGTGGATG...ATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGTACCTGCAGACCCTGTaGAGCCTGAAATCCACTCTC +
Preference number: 4 (lower is better)
Translates to: GRGRYTLLTEVFSSRPQLYLQTL*SLKSTL
Trigger: GAGAGTGGATTTCAGGCTTCACAGGGTCTGCAGGTA...CAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGTGTACCTACCTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGAATGTACTGTTCTGGTaGTATCTGTGGTCCCATCCC +
Preference number: 4 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERNVLFW*YLWSHP
Trigger: GGGATGGGACCACAGATATCACCAGAACAGTACATT...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGAATGTACTGTTCTGGTaGTATCTGTGGTCCCATCCC +
Preference number: 4 (lower is better)
Translates to: KSLESVWVAKALAFSSRWNVLFW*YLWSHP
Trigger: GGGATGGGACCACAGATATCACCAGAACAGTACATT...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TACAGCAGACAGGCTACTGTAGGCCTGTGGGTAAGAGTGGCCAGAGGCACCTTTTTCTATCACTCTCCCTaGTGTAGCAGCAGGAAAGAC +
Preference number: 4 (lower is better)
Translates to: YSRQATVGLWVRVARGTFFYHSP*CSSRKD
Trigger: GTCTTTCCTGCTGCTACATCAGGGAGAGTGATAGAA...AAAGGTGCCTCTGGCCACTCTTACCCACAGGCCTACAGTAGCCTGTCTGCTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCCTGTTGGCGGAGGGCTaGAAGCCGCATTGTTGTATT +
Preference number: 4 (lower is better)
Translates to: EANESPDTSEQSTGESGALLAEG*KPHCCI
Trigger: AATACAACAATGCGGCTTGCAGCCCTCCGCCAACAG...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTATCGGTCCAGACAGCTaGTTTCCCCATGGTCACCAC +
Preference number: 4 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVIGPDS*FPHGHH
Trigger: GTGGTGACCATGGGGAAAGCAGCTGTCTGGACCGAT...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp GGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTCACACATGGGTAATGTaGAGTTTGTATTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: GWQKLWPSPAGGDRMEPSHTWVM*SLYSGT
Trigger: AGTACCTGAATACAAACTGCACATTACCCATGTGTG...AGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGCTCTTCAAAAGGGCCTaGTCCTTGCTGTTCTTCACA +
Preference number: 4 (lower is better)
Translates to: KSLESVWVAKALAFSSRWLFKRA*SLLFFT
Trigger: TGTGAAGAACAGCAAGGAGCAGGCCCTTTTGAAGAG...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp TCCAGGCCACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGACGTCCCGCACGTGGCTaGTCTTCAAAAGGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: SRPQLTSTYLFSPILQMGRPARG*SSKGPA
Trigger: AGCAGGCCCTTTTGAAGAGCAGCCACGTGCGGGACG...TCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGTGGCCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGATACTGGAATCCCACTaGCCACTCATGCACACAGAG +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLILESH*PLMHTE
Trigger: CTCTGTGTGCATGAGTGGCCAGTGGGATTCCAGTAT...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGATACTGGAATCCCACTaGCCACTCATGCACACAGAG +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGEILESH*PLMHTE
Trigger: CTCTGTGTGCATGAGTGGCCAGTGGGATTCCAGTAT...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGAGTCAGGTAGTCCCCTaGGTACTTGGTTTTTGCTTC +
Preference number: 4 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERSQVVP*VLGFCF
Trigger: GAAGCAAAAACCAAGTACCCAGGGGACTACCTGACT...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGTAGCCCTTTGTTCTTCACAGCCTTaGTTAACATCACTGGGGAGT +
Preference number: 4 (lower is better)
Translates to: YCLGSGQWLQGGEPSVALCSSQP*LTSLGS
Trigger: ACTCCCCAGTGATGTTAATCAAGGCTGTGAAGAACA...AAGGGCTACTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TACAGCAGACAGGCTACTGTAGGCCTGTGGGTAAGAGTGGCCAGAGGCACCTTTTGTTCTTCACAGCCTTaGTTAACATCACTGGGGAGT +
Preference number: 4 (lower is better)
Translates to: YSRQATVGLWVRVARGTFCSSQP*LTSLGS
Trigger: ACTCCCCAGTGATGTTAATCAAGGCTGTGAAGAACA...AAAGGTGCCTCTGGCCACTCTTACCCACAGGCCTACAGTAGCCTGTCTGCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTCAGGTACATCTCATCTaGGGACAGCTTACGGTGCAG +
Preference number: 4 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVQVHLI*GQLTVQ
Trigger: CTGCACCGTAAGCTGTCCTCAGATGAGATGTACCTG...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGTTCTATCACTCTCCCTaGTGTAGCAGCAGGAAAGAC +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLFYHSP*CSSRKD
Trigger: GTCTTTCCTGCTGCTACATCAGGGAGAGTGATAGAA...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCTCTTCAAAAGGGCCTaGTCCTTGCTGTTCTTCACA +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLLFKRA*SLLFFT
Trigger: TGTGAAGAACAGCAAGGAGCAGGCCCTTTTGAAGAG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGAAAACTCATCCACCGTaGCTTTGGGCACGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGEKTHPP*LWARSS
Trigger: AGAAGAACGTGCCCAAAGGCACGGTGGATGAGTTTT...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GCTGCGGGTTCACAGATGGGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCATACTGGAATCCCACTaGCCACTCATGCACACAGAG +
Preference number: 4 (lower is better)
Translates to: AAGSQMGRGRYTLLTEVFILESH*PLMHTE
Trigger: CTCTGTGTGCATGAGTGGCCAGTGGGATTCCAGTAT...GAACACCTCAGTCAATAATGTGTACCTACCTCTCCCCATCTGTGAACCCGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp TACAGCAGACAGGCTACTGTAGGCCTGTGGGTAAGAGTGGCCAGAGGCACCTTTAGTCCCCTGGGTACTTaGTTTTTGCTTCTACCACAA +
Preference number: 4 (lower is better)
Translates to: YSRQATVGLWVRVARGTFSPLGT*FLLLPQ
Trigger: TTGTGGTAGAAGCAAAAACCAAGTACCCAGGGGACT...AAAGGTGCCTCTGGCCACTCTTACCCACAGGCCTACAGTAGCCTGTCTGCTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GCTGCGGGTTCACAGATGGGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCTTGCTTGGAGCTCCCTaGCTTCCTTGTTCTATAGCC +
Preference number: 4 (lower is better)
Translates to: AAGSQMGRGRYTLLTEVFLLGAP*LPCSIA
Trigger: GGCTATAGAACAAGGAAGCCAGGGAGCTCCAAGCAA...GAACACCTCAGTCAATAATGTGTACCTACCTCTCCCCATCTGTGAACCCGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
3UTR CAA 72 bp TGTTCCACCTATAGGGTTGCAGACCCCTTTAACTCCTaGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTG +
Preference number: 4 (lower is better)
Translates to: CSTYRVADPFNS*GTFSSSSNRGL
Trigger: CAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGTCTGCAACCCTATAGGTGGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp TGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGGACTCACTGTAGCATTCTATCACTCTCCCTaGTGTAGCAGCAGGAAAGAC +
Preference number: 4 (lower is better)
Translates to: WVLPYRVLYFGREGLTVAFYHSP*CSSRKD
Trigger: GTCTTTCCTGCTGCTACATCAGGGAGAGTGATAGAA...TGCTACAGTGAGTCCCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp TCCAGGCCACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAATCGGTCCAGACAGCTaGTTTCCCCATGGTCACCAC +
Preference number: 4 (lower is better)
Translates to: SRPQLTSTYLFSPILQMGIGPDS*FPHGHH
Trigger: GTGGTGACCATGGGGAAAGCAGCTGTCTGGACCGAT...TCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGTGGCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGCCGATAACAGGTGTCTaGTGGAGTCTTGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: GRGRYTLLTEVFSSRPQLPITGV*WSLGIL
Trigger: AAGGATTCCAAGACTCCAGCAGACACCTGTTATCGG...CAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGTGTACCTACCTCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCAAAACTCATCCACCGTaGCTTTGGGCACGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: EANESPDTSEQSTGESGAKTHPP*LWARSS
Trigger: AGAAGAACGTGCCCAAAGGCACGGTGGATGAGTTTT...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGCTCATCAATGTATTCTaGCCCAGAAAACTCATCCAC +
Preference number: 4 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERLINVF*PRKLIH
Trigger: GTGGATGAGTTTTCTGGGGCAGAATACATTGATGAG...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp AAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGTTCAGGTACTGGAGCTaGTCTGGGGACAGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: KWEFETRLPSSFLLQIQQFRYWS*SGDSSL
Trigger: CAGGCTGCTGTCCCCAGAGCAGCTCCAGTACCTGAA...CTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGGTGTGCATCCGTGTCTaGGATGATGTAGGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: GSLRPDYPVAFFSKYSRQVCIRV*DDVGRE
Trigger: CTCTCTGCCTACATCATCCCAGACACGGATGCACAC...CTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCACATGCCCTTGGCCATaGCAATGTTGTTATACTGGA +
Preference number: 4 (lower is better)
Translates to: EKVEHTVWDLASGFKVVSTCPWP*QCCYTG
Trigger: TCCAGTATAACAACATTGCCATGGCCAAGGGCATGT...GCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TCCAGGCCACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGCGCTCAGGGCTGGTTaGACAGTTTCTCACATCTTC +
Preference number: 4 (lower is better)
Translates to: SRPQLTSTYLFSPILQMGALRAG*TVSHIF
Trigger: GAAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGC...TCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGTGGCCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TCCAGGCCACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAAGACCCTGTGAAGCCTaGAATCCACTCTCGCCTCTT +
Preference number: 4 (lower is better)
Translates to: SRPQLTSTYLFSPILQMGRPCEA*NPLSPL
Trigger: AAGAGGCGAGAGTGGATTTCAGGCTTCACAGGGTCT...TCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGTGGCCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp TTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGGCTACTCACTGCTACGAAGGTTaGAGAGCCAGGCTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: LRPDYPVAFFSKYSRQATHCYEG*RARLSH
Trigger: ATGAGACAGCCTGGCTCTTCAACCTTCGTAGCAGTG...AGTAGCCTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR GCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGGCCTCTTATCAGGTTTaGCAATGTACTCACTCATGT +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLASYQV*QCTHSC
Trigger: ACATGAGTGAGTACATTGGCAAACCTGATAAGAGGC...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCTGTGCAGCTCCCAGTTaGAGTCCATCTGCCTTTCGG +
Preference number: 4 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSCAAPS*SPSAFR
Trigger: CCGAAAGGCAGATGGACTGCAACTGGGAGCTGCACA...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATTGTGCAGCTCCCAGTTaGAGTCCATCTGCCTTTCGG +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHCAAPS*SPSAFR
Trigger: CCGAAAGGCAGATGGACTGCAACTGGGAGCTGCACA...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTCCGATAACAGGTGTCTaGTGGAGTCTTGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVPITGV*WSLGIL
Trigger: AAGGATTCCAAGACTCCAGCAGACACCTGTTATCGG...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp TGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGGACTCACTGTAGCAGCGGATACTTTTTCCTaGCAAGTGCTCCCTGTAAAT +
Preference number: 4 (lower is better)
Translates to: WVLPYRVLYFGREGLTVAADTFS*QVLPVN
Trigger: ATTTACAGGGAGCACTTGGCAGGAAAAAGTATCCGC...TGCTACAGTGAGTCCCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCTCATCAATGTATTCTaGCCCAGAAAACTCATCCAC +
Preference number: 4 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLLINVF*PRKLIH
Trigger: GTGGATGAGTTTTCTGGGGCAGAATACATTGATGAG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp ACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGACTTCAACTTATCTGGCACACAGAGGAAGTTaGCAATGCCATGGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: TLLTEVFSSRPQLTSTYLAHRGS*QCHGLS
Trigger: GGACAGGCCATGGCATTGGCAACTTCCTCTGTGTGC...CAGATAAGTTGAAGTCAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATGCACACAGAGGAAGTTaGCAATGCCATGGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHAHRGS*QCHGLS
Trigger: GGACAGGCCATGGCATTGGCAACTTCCTCTGTGTGC...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATCCCACTGGCCACTCATaGACACAGAGGAAGTTGCCA +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHPTGHS*TQRKLP
Trigger: TGGCAACTTCCTCTGTGTGCATGAGTGGCCAGTGGG...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp ACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGACTTCAACTTATCTGGTGCTGCTCCAACCATaGAAACTCCTCCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: TLLTEVFSSRPQLTSTYLVLLQP*KLLQQL
Trigger: CAGCTGCTGGAGGAGTTTGCATGGTTGGAGCAGCAC...CAGATAAGTTGAAGTCAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGATAACAGGTGTCTGCTaGAGTCTTGGAATCCTTGAT +
Preference number: 4 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGEITGVC*SLGILD
Trigger: ATCAAGGATTCCAAGACTCCAGCAGACACCTGTTAT...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGAGATGGTTTCAAAACTaGGTCCAGAGGAGAAGTTTT +
Preference number: 4 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERRWFQN*VQRRSF
Trigger: AAAACTTCTCCTCTGGACCCAGTTTTGAAACCATCT...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp AGGGAGAGGACAGCTGAGCAGAAGCAAATGAATCCCCAGACACAAGTGAACAGTAGTCAGGTAGTCCCCTaGGTACTTGGTTTTTGCTTC +
Preference number: 4 (lower is better)
Translates to: RERTAEQKQMNPQTQVNSSQVVP*VLGFCF
Trigger: GAAGCAAAAACCAAGTACCCAGGGGACTACCTGACT...ACTGTTCACTTGTGTCTGGGGATTCATTTGCTTCTGCTCAGCTGTCCTCTCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGCTACATTCTCACGAATaGTCTGATAGTAGCGGTTCA +
Preference number: 4 (lower is better)
Translates to: VEHTVWDLASGFKVVSHQLHSHE*SDSSGS
Trigger: TGAACCGCTACTATCAGACCATTCGTGAGAATGTAG...CTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATCATCCGTGTCTGGGATaGTGTAGGCAGAGAGATTCC +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHHPCLG*CRQRDS
Trigger: GGAATCTCTCTGCCTACATCATCCCAGACACGGATG...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACCCTGTGAAGCCTaGAATCCACTCTCGCCTCTT +
Preference number: 4 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSRPCEA*NPLSPL
Trigger: AAGAGGCGAGAGTGGATTTCAGGCTTCACAGGGTCT...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATCACTGCTACGAAGGTTaGAGAGCCAGGCTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHHCYEG*RARLSH
Trigger: ATGAGACAGCCTGGCTCTTCAACCTTCGTAGCAGTG...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp AAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGCAGGTACATCTCATCTaGGGACAGCTTACGGTGCAG +
Preference number: 4 (lower is better)
Translates to: KWEFETRLPSSFLLQIQQQVHLI*GQLTVQ
Trigger: CTGCACCGTAAGCTGTCCTCAGATGAGATGTACCTG...CTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATCTGTTGGCGGAGGGCTaGAAGCCGCATTGTTGTATT +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHLLAEG*KPHCCI
Trigger: AATACAACAATGCGGCTTGCAGCCCTCCGCCAACAG...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp AAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATGCCTCTTATCAGGTTTaGCAATGTACTCACTCATGT +
Preference number: 4 (lower is better)
Translates to: KVEHTVWDLASGFKVVSHASYQV*QCTHSC
Trigger: ACATGAGTGAGTACATTGGCAAACCTGATAAGAGGC...ATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATGTGTGCATCCGTGTCTaGGATGATGTAGGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHVCIRV*DDVGRE
Trigger: CTCTCTGCCTACATCATCCCAGACACGGATGCACAC...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp AAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATATAACAGGTGTCTGCTaGAGTCTTGGAATCCTTGAT +
Preference number: 4 (lower is better)
Translates to: KVEHTVWDLASGFKVVSHITGVC*SLGILD
Trigger: ATCAAGGATTCCAAGACTCCAGCAGACACCTGTTAT...ATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCAACAGCGTCCCGCACGTaGCTGCTCTTCAAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPTASRT*LLFKRA
Trigger: GGCCCTTTTGAAGAGCAGCCACGTGCGGGACGCTGT...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp GTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGAGATGGTTTCAAAACTaGGTCCAGAGGAGAAGTTTT +
Preference number: 4 (lower is better)
Translates to: VEHTVWDLASGFKVVSHQRWFQN*VQRRSF
Trigger: AAAACTTCTCCTCTGGACCCAGTTTTGAAACCATCT...CTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGGCTCGTAGGAGCTGGTaGATATGTTGTTGTTTTAGG +
Preference number: 4 (lower is better)
Translates to: GSLRPDYPVAFFSKYSRQARRSW*ICCCFR
Trigger: CCTAAAACAACAACATATTCACCAGCTCCTACGAGC...CTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp ACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTTGAGATGTGCAGCTCCCAGTTaGAGTCCATCTGCCTTTCGG +
Preference number: 4 (lower is better)
Translates to: TADFNLSVLPNTTNGSLRCAAPS*SPSAFR
Trigger: CCGAAAGGCAGATGGACTGCAACTGGGAGCTGCACA...TCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCCACACATGGGTAATGTaGAGTTTGTATTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: EANESPDTSEQSTGESGAHTWVM*SLYSGT
Trigger: AGTACCTGAATACAAACTGCACATTACCCATGTGTG...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp ACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTTGAGACATCCGTGTCTGGGATaGTGTAGGCAGAGAGATTCC +
Preference number: 4 (lower is better)
Translates to: TADFNLSVLPNTTNGSLRHPCLG*CRQRDS
Trigger: GGAATCTCTCTGCCTACATCATCCCAGACACGGATG...TCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR TCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATAATGTACTGTTCTGGTaGTATCTGTGGTCCCATCCC +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHNVLFW*YLWSHP
Trigger: GGGATGGGACCACAGATATCACCAGAACAGTACATT...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp AATACTACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAACAGGTTCAATGGAAGTaGACATGCCCTTGGCCATGG +
Preference number: 4 (lower is better)
Translates to: NTTNGSLRPDYPVAFFSKQVQWK*TCPWPW
Trigger: CCATGGCCAAGGGCATGTTCACTTCCATTGAACCTG...TTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGTAGTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCCCGATAACAGGTGTCTaGTGGAGTCTTGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSPITGV*WSLGIL
Trigger: AAGGATTCCAAGACTCCAGCAGACACCTGTTATCGG...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATAAAACTCATCCACCGTaGCTTTGGGCACGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHKTHPP*LWARSS
Trigger: AGAAGAACGTGCCCAAAGGCACGGTGGATGAGTTTT...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCACATCCACCGTGCCTTTaGGCACGTTCTTCTCCAACC +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPHPPCL*ARSSPT
Trigger: GGTTGGAGAAGAACGTGCCCAAAGGCACGGTGGATG...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTAGATGGTTTCAAAACTaGGTCCAGAGGAGAAGTTTT +
Preference number: 4 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVRWFQN*VQRRSF
Trigger: AAAACTTCTCCTCTGGACCCAGTTTTGAAACCATCT...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCATACCTGCAGACCCTGTaGAGCCTGAAATCCACTCTC +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPYLQTL*SLKSTL
Trigger: GAGAGTGGATTTCAGGCTTCACAGGGTCTGCAGGTA...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR TCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATTGTTCTTCACAGCCTTaGTTAACATCACTGGGGAGT +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHCSSQP*LTSLGS
Trigger: ACTCCCCAGTGATGTTAATCAAGGCTGTGAAGAACA...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCAAGAGGAAGTTGCCAATaGCATGGCCTGTCCCATGAC +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPRGSCQ*HGLSHD
Trigger: GTCATGGGACAGGCCATGGCATTGGCAACTTCCTCT...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp ACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGACTTCAACTTATCTGACATGCCCTTGGCCATaGCAATGTTGTTATACTGGA +
Preference number: 4 (lower is better)
Translates to: TLLTEVFSSRPQLTSTYLTCPWP*QCCYTG
Trigger: TCCAGTATAACAACATTGCCATGGCCAAGGGCATGT...CAGATAAGTTGAAGTCAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp ATGGGGGAATCAGAGTCTGCCCACACAAGGTTAAGAGGTTTTCAAAGATATGAGCTCATCAATGTATTCTaGCCCAGAAAACTCATCCAC +
Preference number: 4 (lower is better)
Translates to: MGESESAHTRLRGFQRYELINVF*PRKLIH
Trigger: GTGGATGAGTTTTCTGGGGCAGAATACATTGATGAG...CTCATATCTTTGAAAACCTCTTAACCTTGTGTGGGCAGACTCTGATTCCCCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR CCA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATATAACAGGTGTCTGCTaGAGTCTTGGAATCCTTGAT +
Preference number: 4 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHITGVC*SLGILD
Trigger: ATCAAGGATTCCAAGACTCCAGCAGACACCTGTTAT...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp TTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGGCTACTCAAGTTGCACACACATaGGTAATGTGCAGTTTGTAT +
Preference number: 4 (lower is better)
Translates to: LRPDYPVAFFSKYSRQATQVAHT*VMCSLY
Trigger: ATACAAACTGCACATTACCCATGTGTGTGCAACTTG...AGTAGCCTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp ATGGGGGAATCAGAGTCTGCCCACACAAGGTTAAGAGGTTTTCAAAGATATGAGCTACATTCTCACGAATaGTCTGATAGTAGCGGTTCA +
Preference number: 4 (lower is better)
Translates to: MGESESAHTRLRGFQRYELHSHE*SDSSGS
Trigger: TGAACCGCTACTATCAGACCATTCGTGAGAATGTAG...CTCATATCTTTGAAAACCTCTTAACCTTGTGTGGGCAGACTCTGATTCCCCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR GCA 90 bp ACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTTGAGAGCGGATACTTTTTCCTaGCAAGTGCTCCCTGTAAAT +
Preference number: 4 (lower is better)
Translates to: TADFNLSVLPNTTNGSLRADTFS*QVLPVN
Trigger: ATTTACAGGGAGCACTTGGCAGGAAAAAGTATCCGC...TCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCAGTCCATCTTGGTTTTTaGTTCTACCACAAGGGCGAC +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPVHLGF*FYHKGD
Trigger: GTCGCCCTTGTGGTAGAAGCAAAAACCAAGATGGAC...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp ACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTTGAGAAGTCCCCTGGGTACTTaGTTTTTGCTTCTACCACAA +
Preference number: 4 (lower is better)
Translates to: TADFNLSVLPNTTNGSLRSPLGT*FLLLPQ
Trigger: TTGTGGTAGAAGCAAAAACCAAGTACCCAGGGGACT...TCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
3UTR CAA 72 bp AACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTaGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAA +
Preference number: 4 (lower is better)
Translates to: NLSVLPNTTNGS*RPDYPVAFFSK
Trigger: TTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR GCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCAGCGGATACTTTTTCCTaGCAAGTGCTCCCTGTAAAT +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPADTFS*QVLPVN
Trigger: ATTTACAGGGAGCACTTGGCAGGAAAAAGTATCCGC...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCAACATGCCCTTGGCCATaGCAATGTTGTTATACTGGA +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPTCPWP*QCCYTG
Trigger: TCCAGTATAACAACATTGCCATGGCCAAGGGCATGT...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR GCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCACACACATGGGTAATGTaGAGTTTGTATTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPHTWVM*SLYSGT
Trigger: AGTACCTGAATACAAACTGCACATTACCCATGTGTG...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CCA 90 bp TTCATGATAAAGTATGTACATCTGGGAGAAGGTAGAACATACTGTCTGGGATCTCAAGTTGCACACACATaGGTAATGTGCAGTTTGTAT +
Preference number: 4 (lower is better)
Translates to: FMIKYVHLGEGRTYCLGSQVAHT*VMCSLY
Trigger: ATACAAACTGCACATTACCCATGTGTGTGCAACTTG...AGATCCCAGACAGTATGTTCTACCTTCTCCCAGATGTACATACTTTATCATGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CCA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCACAAGTTGCACACACATaGGTAATGTGCAGTTTGTAT +
Preference number: 4 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPQVAHT*VMCSLY
Trigger: ATACAAACTGCACATTACCCATGTGTGTGCAACTTG...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp CCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGCATAAATGGGTTGGCTaGGCACTGGGGGCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: PSPAGGDRMEPSGCCPIGHKWVG*ALGASL
Trigger: CAGAGAGGCCCCCAGTGCCAAGCCAACCCATTTATG...CCCTATAGGGCAACACCCAGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCAAGCACCAGGGGAGCCTGGGATAGCCAGAGCACCTTGCCATTCCCTCCATTCGTTGAAGAGCCCCACTaGCTTGGAGCTCCCTGGCTT +
Preference number: 5 (lower is better)
Translates to: PSTRGAWDSQSTLPFPPFVEEPH*LGAPWL
Trigger: AAGCCAGGGAGCTCCAAGCAAGTGGGGCTCTTCAAC...GAATGGAGGGAATGGCAAGGTGCTCTGGCTATCCCAGGCTCCCCTGGTGCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS CCA 90 bp CCAGCAGCTGGCGACGCTGCAGCTCTGGGCCTACATTCTCACGAATaGTCTGATAGTAGCGGTTCAGGTACTGGAGCTGCTCTGGGGACA +
Preference number: 5 (lower is better)
Translates to: PAAGDAAALGLHSHE*SDSSGSGTGAALGT
Trigger: TGTCCCCAGAGCAGCTCCAGTACCTGAACCGCTACTATCAGACCATTCGTGAGAATGTAGGCCCAGAGCTGCAGCGTCGCCAGCTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCCAGGTCTCCATCTGTaGGCGGAGGGCTGCAAGCCG +
Preference number: 5 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLPGLHL*AEGCKP
Trigger: CGGCTTGCAGCCCTCCGCCAACAGATGGAGACCTGG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp CCAAGCACCAGGGGAGCCTGGGATAGCCAGAGCACCTTGCCATTCCCTCCATTCTCATCCACCGTGCCTTaGGGCACGTTCTTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: PSTRGAWDSQSTLPFPPFSSTVP*GTFFSN
Trigger: GTTGGAGAAGAACGTGCCCAAAGGCACGGTGGATGA...GAATGGAGGGAATGGCAAGGTGCTCTGGCTATCCCAGGCTCCCCTGGTGCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS CCA 90 bp TCCACCGTGCCTTTGGGCACGTTCTTCTCCAACCAGACCAAGTACTaGATCACAGCCACAGCGTCCCGCACGTGGCTGCTCTTCAAAAGG +
Preference number: 5 (lower is better)
Translates to: STVPLGTFFSNQTKY*ITATASRTWLLFKR
Trigger: CCTTTTGAAGAGCAGCCACGTGCGGGACGCTGTGGCTGTGATCCAGTACTTGGTCTGGTTGGAGAAGAACGTGCCCAAAGGCACGGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGCAGGGCATAAATGGGTaGGCTTGGCACTGGGGGCCT +
Preference number: 5 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERQGING*AWHWGP
Trigger: AGGCCCCCAGTGCCAAGCCAACCCATTTATGCCCTG...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTATAGAAGGACCCCAGTaGGAGTCTTGGCATGGTGCT +
Preference number: 5 (lower is better)
Translates to: GWQKLWPSPAGGDRMEPSIEGPQ*ESWHGA
Trigger: AGCACCATGCCAAGACTCCAACTGGGGTCCTTCTAT...AGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp TCCCAACCTCGTCCCCTAACCAAGTGCAGAGTCTCTTCAGGCAGGCCACACCTTGGTGCAGCTCTTTTGTaGGGCTGTAATGGGCCAGGG +
Preference number: 5 (lower is better)
Translates to: SQPRPLTKCRVSSGRPHLGAALL*GCNGPG
Trigger: CCCTGGCCCATTACAGCCCAACAAAAGAGCTGCACC...AAGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR CAA 90 bp CCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTACGGTGCAGCTCTTTaGTTGGGCTGTAATGGGCCA +
Preference number: 5 (lower is better)
Translates to: PSPAGGDRMEPSGCCPIGYGAAL*LGCNGP
Trigger: TGGCCCATTACAGCCCAACAAAAGAGCTGCACCGTA...CCCTATAGGGCAACACCCAGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS GCA 90 bp ATCTTCCCTTCCAAGGTACTTGGGCTCTGGGTAGCTCCAGGCACATaGACAGAGGAGAACAAGCCAGGGGTAGCACTGCCAGTAGGCTTG +
Preference number: 5 (lower is better)
Translates to: IFPSKVLGLWVAPGT*TEENKPGVALPVGL
Trigger: CAAGCCTACTGGCAGTGCTACCCCTGGCTTGTTCTCCTCTGTGCATGTGCCTGGAGCTACCCAGAGCCCAAGTACCTTGGAAGGGAAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS GCA 90 bp GATGTAGGCAGAGAGATTCCAGGTCTCCATCTGTTGGCGGAGGGCTaGAAGCCGCATTGTTGTATTGACGGCAGTAACTGGCAGGCGCTC +
Preference number: 5 (lower is better)
Translates to: DVGREIPGLHLLAEG*KPHCCIDGSNWQAL
Trigger: GAGCGCCTGCCAGTTACTGCCGTCAATACAACAATGCGGCTTGCAGCCCTCCGCCAACAGATGGAGACCTGGAATCTCTCTGCCTACATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp AAAAGTCTGGAGTCAGTGTGGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGGGTGCAGCTCTTTTGTaGGGCTGTAATGGGCCAGGG +
Preference number: 5 (lower is better)
Translates to: KSLESVWVAKALAFSSRWGAALL*GCNGPG
Trigger: CCCTGGCCCATTACAGCCCAACAAAAGAGCTGCACC...CCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCCACACTGACTCCAGACTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CTAGCAGGATGTGAGCCCAGGTGGCTAACGGCTAGACAGGGCCAGACCAGAGAATACGGTGCAGCTCTTTaGTTGGGCTGTAATGGGCCA +
Preference number: 5 (lower is better)
Translates to: LAGCEPRWLTARQGQTREYGAAL*LGCNGP
Trigger: TGGCCCATTACAGCCCAACAAAAGAGCTGCACCGTA...TTCTCTGGTCTGGCCCTGTCTAGCCGTTAGCCACCTGGGCTCACATCCTGCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR CAA 90 bp CCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGCGCCTCTTATCAGGTTaGCCAATGTACTCACTCATG +
Preference number: 5 (lower is better)
Translates to: PSPAGGDRMEPSGCCPIGRLLSG*PMYSLM
Trigger: CATGAGTGAGTACATTGGCAAACCTGATAAGAGGCG...CCCTATAGGGCAACACCCAGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGTTGTGCAGCTCCCAGTaGCAGTCCATCTGCCTTTCG +
Preference number: 5 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERLCSSQ*QSICLS
Trigger: CGAAAGGCAGATGGACTGCAACTGGGAGCTGCACAA...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCAAGCACCAGGGGAGCCTGGGATAGCCAGAGCACCTTGCCATTCCCTCCATTCCACACTGTCACGAACTaGACTGTAGTCCTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: PSTRGAWDSQSTLPFPPFHTVTN*TVVLKL
Trigger: CAACTTGAGGACTACAGTCAAGTTCGTGACAGTGTG...GAATGGAGGGAATGGCAAGGTGCTCTGGCTATCCCAGGCTCCCCTGGTGCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGCTGTTCTTCACAGCCTaGATTAACATCACTGGGGAG +
Preference number: 5 (lower is better)
Translates to: PSPAGGDRMEPSGCCPIGLFFTA*INITGE
Trigger: CTCCCCAGTGATGTTAATCAAGGCTGTGAAGAACAG...CCCTATAGGGCAACACCCAGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp TACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATCAGTAGCCCTTGGCGCTCAGGGCTGGTaGAACAGTTTCTCACATCTT +
Preference number: 5 (lower is better)
Translates to: YCLGSGQWLQGGEPSVALGAQGW*NSFSHL
Trigger: AAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGCC...AAGGGCTACTGATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GGGTGGCAAAAGCTCTGGCCTTCTCCAGCAGGTGGGGATAGGATGGAGCCCTCTAGGCTAAAGCGACTCTaGTTGACAAACAACCTGATG +
Preference number: 5 (lower is better)
Translates to: GWQKLWPSPAGGDRMEPSRLKRL*LTNNLM
Trigger: CATCAGGTTGTTTGTCAACAAGAGTCGCTTTAGCCT...AGAGGGCTCCATCCTATCCCCACCTGCTGGAGAAGGCCAGAGCTTTTGCCACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGTCATCCACCGTGCCTTaGGGCACGTTCTTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLSSTVP*GTFFSN
Trigger: GTTGGAGAAGAACGTGCCCAAAGGCACGGTGGATGA...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp CTCCCAACCTCGTCCCCTAACCAAGTGCAGAGTCTCTTCAGGCAGGCCACACCTGAAGTGAACATGCCCTaGGCCATGGCAATGTTGTTA +
Preference number: 5 (lower is better)
Translates to: LPTSSPNQVQSLFRQATPEVNMP*AMAMLL
Trigger: TAACAACATTGCCATGGCCAAGGGCATGTTCACTTC...AGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS TCA 90 bp CAGGTTTGCCAATGTACTCACTCATGTGTGCATCCGTGTCTGGGATaGTGTAGGCAGAGAGATTCCAGGTCTCCATCTGTTGGCGGAGGG +
Preference number: 5 (lower is better)
Translates to: QVCQCTHSCVHPCLG*CRQRDSRSPSVGGG
Trigger: CCCTCCGCCAACAGATGGAGACCTGGAATCTCTCTGCCTACATCATCCCAGACACGGATGCACACATGAGTGAGTACATTGGCAAACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCCCAGGTCTCCATCTGTaGGCGGAGGGCTGCAAGCCG +
Preference number: 5 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSPGLHL*AEGCKP
Trigger: CGGCTTGCAGCCCTCCGCCAACAGATGGAGACCTGG...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GCTGCGGGTTCACAGATGGGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCTTGTGCAGCTCCCAGTaGCAGTCCATCTGCCTTTCG +
Preference number: 5 (lower is better)
Translates to: AAGSQMGRGRYTLLTEVFLCSSQ*QSICLS
Trigger: CGAAAGGCAGATGGACTGCAACTGGGAGCTGCACAA...GAACACCTCAGTCAATAATGTGTACCTACCTCTCCCCATCTGTGAACCCGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp TACAGCAGACAGGCTACTGTAGGCCTGTGGGTAAGAGTGGCCAGAGGCACCTTTGAAATGCTAACTTCCTaGTGCAGCTCCCAGTTGCAG +
Preference number: 5 (lower is better)
Translates to: YSRQATVGLWVRVARGTFEMLTS*CSSQLQ
Trigger: CTGCAACTGGGAGCTGCACAAGGAAGTTAGCATTTC...AAAGGTGCCTCTGGCCACTCTTACCCACAGGCCTACAGTAGCCTGTCTGCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTCATAAATGGGTTGGCTaGGCACTGGGGGCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVHKWVG*ALGASL
Trigger: CAGAGAGGCCCCCAGTGCCAAGCCAACCCATTTATG...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp AGGGAGAGGACAGCTGAGCAGAAGCAAATGAATCCCCAGACACAAGTGAACAGTCATAAATGGGTTGGCTaGGCACTGGGGGCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: RERTAEQKQMNPQTQVNSHKWVG*ALGASL
Trigger: CAGAGAGGCCCCCAGTGCCAAGCCAACCCATTTATG...ACTGTTCACTTGTGTCTGGGGATTCATTTGCTTCTGCTCAGCTGTCCTCTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGATAGAAGGACCCCAGTaGGAGTCTTGGCATGGTGCT +
Preference number: 5 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLIEGPQ*ESWHGA
Trigger: AGCACCATGCCAAGACTCCAACTGGGGTCCTTCTAT...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp TCCCAACCTCGTCCCCTAACCAAGTGCAGAGTCTCTTCAGGCAGGCCACACCTTCTGTTCTTCACAGCCTaGATTAACATCACTGGGGAG +
Preference number: 5 (lower is better)
Translates to: SQPRPLTKCRVSSGRPHLLFFTA*INITGE
Trigger: CTCCCCAGTGATGTTAATCAAGGCTGTGAAGAACAG...AAGGTGTGGCCTGCCTGAAGAGACTCTGCACTTGGTTAGGGGACGAGGTTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR CAA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGAAAAGGGCCTGCTCCTaGCTGTTCTTCACAGCCTTG +
Preference number: 5 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGEKRACS*LFFTAL
Trigger: CAAGGCTGTGAAGAACAGCAAGGAGCAGGCCCTTTT...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp TGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGGACTCACTGTAGCATCATCCACCGTGCCTTaGGGCACGTTCTTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: WVLPYRVLYFGREGLTVASSTVP*GTFFSN
Trigger: GTTGGAGAAGAACGTGCCCAAAGGCACGGTGGATGA...TGCTACAGTGAGTCCCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTGGTGCAGCTCTTTTGTaGGGCTGTAATGGGCCAGGG +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVGAALL*GCNGPG
Trigger: CCCTGGCCCATTACAGCCCAACAAAAGAGCTGCACC...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp GGAGAAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGAGTATAGGCCTCCTTTaGGAAGGCAGTAGGAGTGCC +
Preference number: 5 (lower is better)
Translates to: GEGRTYCLGSGQWLQGGESIGLL*EGSRSA
Trigger: GGCACTCCTACTGCCTTCCAAAAGGAGGCCTATACT...CTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGAGTATAGGCCTCCTTTaGGAAGGCAGTAGGAGTGCC +
Preference number: 5 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLSIGLL*EGSRSA
Trigger: GGCACTCCTACTGCCTTCCAAAAGGAGGCCTATACT...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp GCTGCGGGTTCACAGATGGGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCTGCACACAGAGGAAGTaGCCAATGCCATGGCCTGTC +
Preference number: 5 (lower is better)
Translates to: AAGSQMGRGRYTLLTEVFCTQRK*PMPWPV
Trigger: GACAGGCCATGGCATTGGCAACTTCCTCTGTGTGCA...GAACACCTCAGTCAATAATGTGTACCTACCTCTCCCCATCTGTGAACCCGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS TCA 90 bp CATTGTTGTATTGACGGCAGTAACTGGCAGGCGCTCAGGGCTGGTTaGACAGTTTCTCACATCTTCCCTTCCAAGGTACTTGGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: HCCIDGSNWQALRAG*TVSHIFPSKVLGLW
Trigger: CCAGAGCCCAAGTACCTTGGAAGGGAAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGCCTGCCAGTTACTGCCGTCAATACAACAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp AAGGTAGAACATACTGTCTGGGATCTGGCCAGTGGCTTCAAGGTGGTGAGCCATTCACTGCTACGAAGGTaGAAGAGCCCCACTTGCTTG +
Preference number: 5 (lower is better)
Translates to: KVEHTVWDLASGFKVVSHSLLRR*KSPTCL
Trigger: CAAGCAAGTGGGGCTCTTCAACCTTCGTAGCAGTGA...ATGGCTCACCACCTTGAAGCCACTGGCCAGATCCCAGACAGTATGTTCTACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS TCA 90 bp CACAGAGGAAGTTGCCAATGCCATGGCCTGTCCCATGACCATAATTaGGCCCAACTTCCCATAAGGCTCTTCGGGCAAAGGCTTCTATCA +
Preference number: 5 (lower is better)
Translates to: HRGSCQCHGLSHDHN*AQLPIRLFGQRLLS
Trigger: TGATAGAAGCCTTTGCCCGAAGAGCCTTATGGGAAGTTGGGCTCAATTATGGTCATGGGACAGGCCATGGCATTGGCAACTTCCTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS GCA 90 bp CCACTCTCGCCTCTTATCAGGTTTGCCAATGTACTCACTCATGTGTaGATCCGTGTCTGGGATGATGTAGGCAGAGAGATTCCAGGTCTC +
Preference number: 5 (lower is better)
Translates to: PLSPLIRFANVLTHV*IRVWDDVGREIPGL
Trigger: GAGACCTGGAATCTCTCTGCCTACATCATCCCAGACACGGATGCACACATGAGTGAGTACATTGGCAAACCTGATAAGAGGCGAGAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTGGCGCTCAGGGCTGGTaGAACAGTTTCTCACATCTT +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVGAQGW*NSFSHL
Trigger: AAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGCC...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCGAAATGCTAACTTCCTaGTGCAGCTCCCAGTTGCAG +
Preference number: 5 (lower is better)
Translates to: EANESPDTSEQSTGESGAEMLTS*CSSQLQ
Trigger: CTGCAACTGGGAGCTGCACAAGGAAGTTAGCATTTC...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCCAGGGCATAAATGGGTaGGCTTGGCACTGGGGGCCT +
Preference number: 5 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSQGING*AWHWGP
Trigger: AGGCCCCCAGTGCCAAGCCAACCCATTTATGCCCTG...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTAAAAGGGCCTGCTCCTaGCTGTTCTTCACAGCCTTG +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVKRACS*LFFTAL
Trigger: CAAGGCTGTGAAGAACAGCAAGGAGCAGGCCCTTTT...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTTACGGTGCAGCTCTTTaGTTGGGCTGTAATGGGCCA +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVYGAAL*LGCNGP
Trigger: TGGCCCATTACAGCCCAACAAAAGAGCTGCACCGTA...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp AGGATGGAGCCCTCTGGGTGTTGCCCTATAGGGTCCTTTACTTTGGGAGAGAGGTTGGCCATGGCAATGTaGTTATACTGGAATCCCACT +
Preference number: 5 (lower is better)
Translates to: RMEPSGCCPIGSFTLGERLAMAM*LYWNPT
Trigger: AGTGGGATTCCAGTATAACAACATTGCCATGGCCAA...CCTCTCTCCCAAAGTAAAGGACCCTATAGGGCAACACCCAGAGGGCTCCATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS GCA 90 bp GCGACTCTTGTTGACAAACAACCTGATGGAGGAGTTCGTGAGCAGTaGATAGGAGTAGAAGAAGGGGTTATAGGGGATGTCACTGCTACG +
Preference number: 5 (lower is better)
Translates to: ATLVDKQPDGGVREQ*IGVEEGVIGDVTAT
Trigger: CGTAGCAGTGACATCCCCTATAACCCCTTCTTCTACTCCTATGCACTGCTCACGAACTCCTCCATCAGGTTGTTTGTCAACAAGAGTCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CCA 90 bp CTTATCAGGTTTGCCAATGTACTCACTCATGTGTGCATCCGTGTCTaGGATGATGTAGGCAGAGAGATTCCAGGTCTCCATCTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: LIRFANVLTHVCIRV*DDVGREIPGLHLLA
Trigger: CGCCAACAGATGGAGACCTGGAATCTCTCTGCCTACATCATCCCAGACACGGATGCACACATGAGTGAGTACATTGGCAAACCTGATAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GAAGCAAATGAATCCCCAGACACAAGTGAACAGTCCACAGGAGAATCAGGGGCCCGCCTCTTATCAGGTTaGCCAATGTACTCACTCATG +
Preference number: 5 (lower is better)
Translates to: EANESPDTSEQSTGESGARLLSG*PMYSLM
Trigger: CATGAGTGAGTACATTGGCAAACCTGATAAGAGGCG...GGCCCCTGATTCTCCTGTGGACTGTTCACTTGTGTCTGGGGATTCATTTGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGATAGAAGGACCCCAGTaGGAGTCTTGGCATGGTGCT +
Preference number: 5 (lower is better)
Translates to: GSLRPDYPVAFFSKYSRQIEGPQ*ESWHGA
Trigger: AGCACCATGCCAAGACTCCAACTGGGGTCCTTCTAT...CTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGCTAAAGCGACTCTTGTaGACAAACAACCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLLKRLL*TNNLME
Trigger: CTCCATCAGGTTGTTTGTCAACAAGAGTCGCTTTAG...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGTTTGAGGCTAAAGCGACTCTaGTTGACAAACAACCTGATG +
Preference number: 5 (lower is better)
Translates to: PTPTSWPWHSPVLRHISLRLKRL*LTNNLM
Trigger: CATCAGGTTGTTTGTCAACAAGAGTCGCTTTAGCCT...CAAACTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp TTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGGCTACTTGCACACAGAGGAAGTaGCCAATGCCATGGCCTGTC +
Preference number: 5 (lower is better)
Translates to: LRPDYPVAFFSKYSRQATCTQRK*PMPWPV
Trigger: GACAGGCCATGGCATTGGCAACTTCCTCTGTGTGCA...AGTAGCCTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp TTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGGCTACTGGCGCTCAGGGCTGGTaGAACAGTTTCTCACATCTT +
Preference number: 5 (lower is better)
Translates to: LRPDYPVAFFSKYSRQATGAQGW*NSFSHL
Trigger: AAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGCC...AGTAGCCTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATTTGTGCAGCTCCCAGTaGCAGTCCATCTGCCTTTCG +
Preference number: 5 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHLCSSQ*QSICLS
Trigger: CGAAAGGCAGATGGACTGCAACTGGGAGCTGCACAA...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp GGGAGAGGTAGGTACACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGAGGCTAAAGCGACTCTaGTTGACAAACAACCTGATG +
Preference number: 5 (lower is better)
Translates to: GRGRYTLLTEVFSSRPQLRLKRL*LTNNLM
Trigger: CATCAGGTTGTTTGTCAACAAGAGTCGCTTTAGCCT...CAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGTGTACCTACCTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTCACACTGTCACGAACTaGACTGTAGTCCTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVHTVTN*TVVLKL
Trigger: CAACTTGAGGACTACAGTCAAGTTCGTGACAGTGTG...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTGAAGTGAACATGCCCTaGGCCATGGCAATGTTGTTA +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVEVNMP*AMAMLL
Trigger: TAACAACATTGCCATGGCCAAGGGCATGTTCACTTC...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTAGTCCATCTTGGTTTTaGCTTCTACCACAAGGGCGA +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVSPSWF*LLPQGR
Trigger: TCGCCCTTGTGGTAGAAGCAAAAACCAAGATGGACT...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCACAGGGCATAAATGGGTaGGCTTGGCACTGGGGGCCT +
Preference number: 5 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPQGING*AWHWGP
Trigger: AGGCCCCCAGTGCCAAGCCAACCCATTTATGCCCTG...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp ATGGGGGAATCAGAGTCTGCCCACACAAGGTTAAGAGGTTTTCAAAGATATGAGTCACTGCTACGAAGGTaGAAGAGCCAGGCTGTCTCA +
Preference number: 5 (lower is better)
Translates to: MGESESAHTRLRGFQRYESLLRR*KSQAVS
Trigger: TGAGACAGCCTGGCTCTTCAACCTTCGTAGCAGTGA...CTCATATCTTTGAAAACCTCTTAACCTTGTGTGGGCAGACTCTGATTCCCCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000077775.11
CDS-3UTR CAA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATTCACTGCTACGAAGGTaGAAGAGCCAGGCTGTCTCA +
Preference number: 5 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHSLLRR*KSQAVS
Trigger: TGAGACAGCCTGGCTCTTCAACCTTCGTAGCAGTGA...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp ACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAAAAGGGCCTGCTCCTaGCTGTTCTTCACAGCCTTG +
Preference number: 5 (lower is better)
Translates to: TNGSLRPDYPVAFFSKYSKRACS*LFFTAL
Trigger: CAAGGCTGTGAAGAACAGCAAGGAGCAGGCCCTTTT...GCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACATTATTGACTGAGGTGTTCAGTTCCAGGCCACAGCTGACTTCAACTTATCTGAGTATAGGCCTCCTTTaGGAAGGCAGTAGGAGTGCC +
Preference number: 5 (lower is better)
Translates to: TLLTEVFSSRPQLTSTYLSIGLL*EGSRSA
Trigger: GGCACTCCTACTGCCTTCCAAAAGGAGGCCTATACT...CAGATAAGTTGAAGTCAGCTGTGGCCTGGAACTGAACACCTCAGTCAATAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACCCCTTTAACTCCTTGGGTACTTTCTCTAGCTCCTCCAATAGGGGCCTGTGTTTTGGCCATGGCAATGTaGTTATACTGGAATCCCACT +
Preference number: 5 (lower is better)
Translates to: TPLTPWVLSLAPPIGACVLAMAM*LYWNPT
Trigger: AGTGGGATTCCAGTATAACAACATTGCCATGGCCAA...AACACAGGCCCCTATTGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp AAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGAGCTCCCTGGCTTCCTaGTTCTATAGCCCCAAACAG +
Preference number: 5 (lower is better)
Translates to: KWEFETRLPSSFLLQIQQSSLAS*FYSPKQ
Trigger: CTGTTTGGGGCTATAGAACAAGGAAGCCAGGGAGCT...CTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS TCA 90 bp GGATTCCAAACTCCCCATCATGGTAGTATCCAGGTTCAATGGAAGTaGACATGCCCTTGGCCATGGCAATGTTGTTATACTGGAATCCCA +
Preference number: 5 (lower is better)
Translates to: GFQTPHHGSIQVQWK*TCPWPWQCCYTGIP
Trigger: TGGGATTCCAGTATAACAACATTGCCATGGCCAAGGGCATGTTCACTTCCATTGAACCTGGATACTACCATGATGGGGAGTTTGGAATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATGAAATGCTAACTTCCTaGTGCAGCTCCCAGTTGCAG +
Preference number: 5 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHEMLTS*CSSQLQ
Trigger: CTGCAACTGGGAGCTGCACAAGGAAGTTAGCATTTC...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp GGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGCTAAAGCGACTCTTGTaGACAAACAACCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: GSLRPDYPVAFFSKYSRQLKRLL*TNNLME
Trigger: CTCCATCAGGTTGTTTGTCAACAAGAGTCGCTTTAG...CTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp TTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAATACAGCAGACAGGCTACTCTAAAGCGACTCTTGTaGACAAACAACCTGATGGAG +
Preference number: 5 (lower is better)
Translates to: LRPDYPVAFFSKYSRQATLKRLL*TNNLME
Trigger: CTCCATCAGGTTGTTTGTCAACAAGAGTCGCTTTAG...AGTAGCCTGTCTGCTGTATTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp GTGAGTACACTGTTCTTGTCTTCAGACACATCAGAAGAGGGCATAAGATCCCATCTGTTCTTCACAGCCTaGATTAACATCACTGGGGAG +
Preference number: 5 (lower is better)
Translates to: VSTLFLSSDTSEEGIRSHLFFTA*INITGE
Trigger: CTCCCCAGTGATGTTAATCAAGGCTGTGAAGAACAG...ATGGGATCTTATGCCCTCTTCTGATGTGTCTGAAGACAAGAACAGTGTACTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCATGCACACAGAGGAAGTaGCCAATGCCATGGCCTGTC +
Preference number: 5 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPCTQRK*PMPWPV
Trigger: GACAGGCCATGGCATTGGCAACTTCCTCTGTGTGCA...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS GCA 90 bp TCAAGTTGCACACACATGGGTAATGTGCAGTTTGTATTCAGGTACTaGAAGGTCTCAAGGCTAAAGCGACTCTTGTTGACAAACAACCTG +
Preference number: 5 (lower is better)
Translates to: SSCTHMGNVQFVFRY*KVSRLKRLLLTNNL
Trigger: CAGGTTGTTTGTCAACAAGAGTCGCTTTAGCCTTGAGACCTTGCAGTACCTGAATACAAACTGCACATTACCCATGTGTGTGCAACTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 90 bp TCTGAGTTTCCACAGACTATGATCTTGGGAGCTCGTAGGAGCTGGTaGATATGTTGTTGTTTTAGGAAAAGCTGTATGTTGCAAGGTCCA +
Preference number: 5 (lower is better)
Translates to: SEFPQTMILGARRSW*ICCCFRKSCMLQGP
Trigger: TGGACCTTGCAACATACAGCTTTTCCTAAAACAACAACATATTCACCAGCTCCTACGAGCTCCCAAGATCATAGTCTGTGGAAACTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp ACAGCTGACTTCAACTTATCTGTTCTCCCCAATACTACAAATGGGAGTTTGAGACACACTGTCACGAACTaGACTGTAGTCCTCAAGTTG +
Preference number: 5 (lower is better)
Translates to: TADFNLSVLPNTTNGSLRHTVTN*TVVLKL
Trigger: CAACTTGAGGACTACAGTCAAGTTCGTGACAGTGTG...TCTCAAACTCCCATTTGTAGTATTGGGGAGAACAGATAAGTTGAAGTCAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp AATACTACAAATGGGAGTTTGAGACCAGACTACCCAGTAGCTTTCTTCTCCAAAGAAGTGAACATGCCCTaGGCCATGGCAATGTTGTTA +
Preference number: 5 (lower is better)
Translates to: NTTNGSLRPDYPVAFFSKEVNMP*AMAMLL
Trigger: TAACAACATTGCCATGGCCAAGGGCATGTTCACTTC...TTTGGAGAAGAAAGCTACTGGGTAGTCTGGTCTCAAACTCCCATTTGTAGTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS-3UTR CAA 90 bp CCATACACATTTCTCTGTACCTTCCTCTACTACTTTTACATAGTGCTAAACCCACGCCTCTTATCAGGTTaGCCAATGTACTCACTCATG +
Preference number: 5 (lower is better)
Translates to: PYTFLCTFLYYFYIVLNPRLLSG*PMYSLM
Trigger: CATGAGTGAGTACATTGGCAAACCTGATAAGAGGCG...TGGGTTTAGCACTATGTAAAAGTAGTAGAGGAAGGTACAGAGAAATGTGTATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114998.8
CDS-3UTR CAA 90 bp TTCATGATAAAGTATGTACATCTGGGAGAAGGTAGAACATACTGTCTGGGATCTTTGGCCATGGCAATGTaGTTATACTGGAATCCCACT +
Preference number: 5 (lower is better)
Translates to: FMIKYVHLGEGRTYCLGSLAMAM*LYWNPT
Trigger: AGTGGGATTCCAGTATAACAACATTGCCATGGCCAA...AGATCCCAGACAGTATGTTCTACCTTCTCCCAGATGTACATACTTTATCATGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS CCA 72 bp GTGTGCTGCTCCAACCATGCAAACTCCTCCAGCAGCTaGCGACGCTGCAGCTCTGGGCCTACATTCTCACGA +
Preference number: 6 (lower is better)
Translates to: VCCSNHANSSSS*RRCSSGPTFSR
Trigger: TCGTGAGAATGTAGGCCCAGAGCTGCAGCGTCGCCAGCTGCTGGAGGAGTTTGCATGGTTGGAGCAGCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS GCA 72 bp TCCAAGGTACTTGGGCTCTGGGTAGCTCCAGGCACATaGACAGAGGAGAACAAGCCAGGGGTAGCACTGCCA +
Preference number: 6 (lower is better)
Translates to: SKVLGLWVAPGT*TEENKPGVALP
Trigger: TGGCAGTGCTACCCCTGGCTTGTTCTCCTCTGTGCATGTGCCTGGAGCTACCCAGAGCCCAAGTACCTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 72 bp ATCTGTTGGCGGAGGGCTGCAAGCCGCATTGTTGTATaGACGGCAGTAACTGGCAGGCGCTCAGGGCTGGTT +
Preference number: 6 (lower is better)
Translates to: ICWRRAASRIVV*TAVTGRRSGLV
Trigger: AACCAGCCCTGAGCGCCTGCCAGTTACTGCCGTCAATACAACAATGCGGCTTGCAGCCCTCCGCCAACAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 90 bp CAGGTCTCCATCTGTTGGCGGAGGGCTGCAAGCCGCATTGTTGTATaGACGGCAGTAACTGGCAGGCGCTCAGGGCTGGTTGAACAGTTT +
Preference number: 6 (lower is better)
Translates to: QVSICWRRAASRIVV*TAVTGRRSGLVEQF
Trigger: AAACTGTTCAACCAGCCCTGAGCGCCTGCCAGTTACTGCCGTCAATACAACAATGCGGCTTGCAGCCCTCCGCCAACAGATGGAGACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 72 bp GGCATAAATGGGTTGGCTTGGCACTGGGGGCCTCTCTaGCCCCCATGCCACGTCAACAAGGTTGGTTGTAAC +
Preference number: 6 (lower is better)
Translates to: GINGLAWHWGPL*PPCHVNKVGCN
Trigger: GTTACAACCAACCTTGTTGACGTGGCATGGGGGTCAGAGAGGCCCCCAGTGCCAAGCCAACCCATTTATGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS GCA 72 bp GGCCTGAGTCCAGTAACGACTATCGGTCCAGACAGCTaGTTTCCCCATGGTCACCACAGCAGTACCTGCAGA +
Preference number: 6 (lower is better)
Translates to: GLSPVTTIGPDS*FPHGHHSSTCR
Trigger: TCTGCAGGTACTGCTGTGGTGACCATGGGGAAAGCAGCTGTCTGGACCGATAGTCGTTACTGGACTCAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CCA 72 bp GGCGACGCTGCAGCTCTGGGCCTACATTCTCACGAATaGTCTGATAGTAGCGGTTCAGGTACTGGAGCTGCT +
Preference number: 6 (lower is better)
Translates to: GDAAALGLHSHE*SDSSGSGTGAA
Trigger: AGCAGCTCCAGTACCTGAACCGCTACTATCAGACCATTCGTGAGAATGTAGGCCCAGAGCTGCAGCGTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000115000.4
CDS CAA 72 bp GGGGGCCTCTCTGACCCCCATGCCACGTCAACAAGGTaGGTTGTAACCGATAACAGGTGTCTGCTGGAGTCT +
Preference number: 6 (lower is better)
Translates to: GGLSDPHATSTR*VVTDNRCLLES
Trigger: AGACTCCAGCAGACACCTGTTATCGGTTACAACCAACCTTGTTGACGTGGCATGGGGGTCAGAGAGGCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 90 bp CTTGGCACTGGGGGCCTCTCTGACCCCCATGCCACGTCAACAAGGTaGGTTGTAACCGATAACAGGTGTCTGCTGGAGTCTTGGAATCCT +
Preference number: 6 (lower is better)
Translates to: LGTGGLSDPHATSTR*VVTDNRCLLESWNP
Trigger: AGGATTCCAAGACTCCAGCAGACACCTGTTATCGGTTACAACCAACCTTGTTGACGTGGCATGGGGGTCAGAGAGGCCCCCAGTGCCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 72 bp ACATCTCATCTGAGGACAGCTTACGGTGCAGCTCTTTaGTTGGGCTGTAATGGGCCAGGGCGGCATTCAGGC +
Preference number: 6 (lower is better)
Translates to: TSHLRTAYGAAL*LGCNGPGRHSG
Trigger: GCCTGAATGCCGCCCTGGCCCATTACAGCCCAACAAAAGAGCTGCACCGTAAGCTGTCCTCAGATGAGATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS GCA 72 bp AGAGAGATTCCAGGTCTCCATCTGTTGGCGGAGGGCTaGAAGCCGCATTGTTGTATTGACGGCAGTAACTGG +
Preference number: 6 (lower is better)
Translates to: REIPGLHLLAEG*KPHCCIDGSNW
Trigger: CCAGTTACTGCCGTCAATACAACAATGCGGCTTGCAGCCCTCCGCCAACAGATGGAGACCTGGAATCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS GCA 72 bp ACAGCGTCCCGCACGTGGCTGCTCTTCAAAAGGGCCTaGTCCTTGCTGTTCTTCACAGCCTTGATTAACATC +
Preference number: 6 (lower is better)
Translates to: TASRTWLLFKRA*SLLFFTALINI
Trigger: GATGTTAATCAAGGCTGTGAAGAACAGCAAGGAGCAGGCCCTTTTGAAGAGCAGCCACGTGCGGGACGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CCA 72 bp ACGAAGGTTGAAGAGCCCCACTTGCTTGGAGCTCCCTaGCTTCCTTGTTCTATAGCCCCAAACAGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: TKVEEPHLLGAP*LPCSIAPNSCS
Trigger: AGAGCAGCTGTTTGGGGCTATAGAACAAGGAAGCCAGGGAGCTCCAAGCAAGTGGGGCTCTTCAACCTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS CAA 90 bp CCCACTCACAGGCTGTCTCATCAAGTGCAGATAGAAGGACCCCAGTaGGAGTCTTGGCATGGTGCTCCATATAGCTTCGGACAGCGGATA +
Preference number: 6 (lower is better)
Translates to: PTHRLSHQVQIEGPQ*ESWHGAPYSFGQRI
Trigger: TATCCGCTGTCCGAAGCTATATGGAGCACCATGCCAAGACTCCAACTGGGGTCCTTCTATCTGCACTTGATGAGACAGCCTGTGAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS TCA 72 bp AGTTGCCAATGCCATGGCCTGTCCCATGACCATAATTaGGCCCAACTTCCCATAAGGCTCTTCGGGCAAAGG +
Preference number: 6 (lower is better)
Translates to: SCQCHGLSHDHN*AQLPIRLFGQR
Trigger: CCTTTGCCCGAAGAGCCTTATGGGAAGTTGGGCTCAATTATGGTCATGGGACAGGCCATGGCATTGGCAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 90 bp GCAGACCCTGTGAAGCCTGAAATCCACTCTCGCCTCTTATCAGGTTaGCCAATGTACTCACTCATGTGTGCATCCGTGTCTGGGATGATG +
Preference number: 6 (lower is better)
Translates to: ADPVKPEIHSRLLSG*PMYSLMCASVSGMM
Trigger: CATCATCCCAGACACGGATGCACACATGAGTGAGTACATTGGCAAACCTGATAAGAGGCGAGAGTGGATTTCAGGCTTCACAGGGTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 72 bp ATTGACGGCAGTAACTGGCAGGCGCTCAGGGCTGGTTaGACAGTTTCTCACATCTTCCCTTCCAAGGTACTT +
Preference number: 6 (lower is better)
Translates to: IDGSNWQALRAG*TVSHIFPSKVL
Trigger: AAGTACCTTGGAAGGGAAGATGTGAGAAACTGTTCAACCAGCCCTGAGCGCCTGCCAGTTACTGCCGTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 72 bp TCAAAAGGGCCTGCTCCTTGCTGTTCTTCACAGCCTTaGTTAACATCACTGGGGAGTAGGTGTCTGTCACGA +
Preference number: 6 (lower is better)
Translates to: SKGPAPCCSSQP*LTSLGSRCLSR
Trigger: TCGTGACAGACACCTACTCCCCAGTGATGTTAATCAAGGCTGTGAAGAACAGCAAGGAGCAGGCCCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 72 bp CAGCTGCTCTCTTCCCCTCTGAGTTTCCACAGACTATaGTCTTGGGAGCTCGTAGGAGCTGGTGAATATGTT +
Preference number: 6 (lower is better)
Translates to: QLLSSPLSFHRL*SWELVGAGEYV
Trigger: AACATATTCACCAGCTCCTACGAGCTCCCAAGATCATAGTCTGTGGAAACTCAGAGGGGAAGAGAGCAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS CCA 72 bp TCACTGGGGAGTAGGTGTCTGTCACGAGTTTCTCCTTaGGTATCACTTCATAGACCCCATAGGTGGTATAGC +
Preference number: 6 (lower is better)
Translates to: SLGSRCLSRVSP*VSLHRPHRWYS
Trigger: GCTATACCACCTATGGGGTCTATGAAGTGATACCCAAGGAGAAACTCGTGACAGACACCTACTCCCCAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 72 bp AAGATCCAGGCGACAATGGAAGAAATGCTAACTTCCTaGTGCAGCTCCCAGTTGCAGTCCATCTGCCTTTCG +
Preference number: 6 (lower is better)
Translates to: KIQATMEEMLTS*CSSQLQSICLS
Trigger: CGAAAGGCAGATGGACTGCAACTGGGAGCTGCACAAGGAAGTTAGCATTTCTTCCATTGTCGCCTGGATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 72 bp CAATGTACTCACTCATGTGTGCATCCGTGTCTGGGATaGTGTAGGCAGAGAGATTCCAGGTCTCCATCTGTT +
Preference number: 6 (lower is better)
Translates to: QCTHSCVHPCLG*CRQRDSRSPSV
Trigger: AACAGATGGAGACCTGGAATCTCTCTGCCTACATCATCCCAGACACGGATGCACACATGAGTGAGTACATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 72 bp AGAAGGGGTTATAGGGGATGTCACTGCTACGAAGGTTaGAGAGCCAGGCTGTCTCATCAAGTGCAGATAGAA +
Preference number: 6 (lower is better)
Translates to: RRGYRGCHCYEG*RARLSHQVQIE
Trigger: TTCTATCTGCACTTGATGAGACAGCCTGGCTCTTCAACCTTCGTAGCAGTGACATCCCCTATAACCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
CDS GCA 72 bp GTTGACAAACAACCTGATGGAGGAGTTCGTGAGCAGTaGATAGGAGTAGAAGAAGGGGTTATAGGGGATGTC +
Preference number: 6 (lower is better)
Translates to: VDKQPDGGVREQ*IGVEEGVIGDV
Trigger: GACATCCCCTATAACCCCTTCTTCTACTCCTATGCACTGCTCACGAACTCCTCCATCAGGTTGTTTGTCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CCA 72 bp TTTGCCAATGTACTCACTCATGTGTGCATCCGTGTCTaGGATGATGTAGGCAGAGAGATTCCAGGTCTCCAT +
Preference number: 6 (lower is better)
Translates to: FANVLTHVCIRV*DDVGREIPGLH
Trigger: ATGGAGACCTGGAATCTCTCTGCCTACATCATCCCAGACACGGATGCACACATGAGTGAGTACATTGGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 72 bp AGGTACTGCAAGGTCTCAAGGCTAAAGCGACTCTTGTaGACAAACAACCTGATGGAGGAGTTCGTGAGCAGT +
Preference number: 6 (lower is better)
Translates to: RYCKVSRLKRLL*TNNLMEEFVSS
Trigger: ACTGCTCACGAACTCCTCCATCAGGTTGTTTGTCAACAAGAGTCGCTTTAGCCTTGAGACCTTGCAGTACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 72 bp TTCAGGTACTGCAAGGTCTCAAGGCTAAAGCGACTCTaGTTGACAAACAACCTGATGGAGGAGTTCGTGAGC +
Preference number: 6 (lower is better)
Translates to: FRYCKVSRLKRL*LTNNLMEEFVS
Trigger: GCTCACGAACTCCTCCATCAGGTTGTTTGTCAACAAGAGTCGCTTTAGCCTTGAGACCTTGCAGTACCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CAA 72 bp TCAATGGAAGTGAACATGCCCTTGGCCATGGCAATGTaGTTATACTGGAATCCCACTGGCCACTCATGCACA +
Preference number: 6 (lower is better)
Translates to: SMEVNMPLAMAM*LYWNPTGHSCT
Trigger: TGTGCATGAGTGGCCAGTGGGATTCCAGTATAACAACATTGCCATGGCCAAGGGCATGTTCACTTCCATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS GCA 72 bp GACTGTAGTCCTCAAGTTGCACACACATGGGTAATGTaGAGTTTGTATTCAGGTACTGCAAGGTCTCAAGGC +
Preference number: 6 (lower is better)
Translates to: DCSPQVAHTWVM*SLYSGTARSQG
Trigger: GCCTTGAGACCTTGCAGTACCTGAATACAAACTGCACATTACCCATGTGTGTGCAACTTGAGGACTACAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS CCA 72 bp TTAGGAAAAGCTGTATGTTGCAAGGTCCAGGAAGCTTaGGACTACCAGACTGACCCATGTTCAAAAATCCCC +
Preference number: 6 (lower is better)
Translates to: LGKAVCCKVQEA*DYQTDPCSKIP
Trigger: GGGGATTTTTGAACATGGGTCAGTCTGGTAGTCCCAAGCTTCCTGGACCTTGCAACATACAGCTTTTCCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4
CDS GCA 72 bp ACACACATGGGTAATGTGCAGTTTGTATTCAGGTACTaGAAGGTCTCAAGGCTAAAGCGACTCTTGTTGACA +
Preference number: 6 (lower is better)
Translates to: THMGNVQFVFRY*KVSRLKRLLLT
Trigger: TGTCAACAAGAGTCGCTTTAGCCTTGAGACCTTGCAGTACCTGAATACAAACTGCACATTACCCATGTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077775.11
ENSMUST00000114998.8
ENSMUST00000115000.4
CDS TCA 72 bp CCACAGACTATGATCTTGGGAGCTCGTAGGAGCTGGTaGATATGTTGTTGTTTTAGGAAAAGCTGTATGTTG +
Preference number: 6 (lower is better)
Translates to: PQTMILGARRSW*ICCCFRKSCML
Trigger: CAACATACAGCTTTTCCTAAAACAACAACATATTCACCAGCTCCTACGAGCTCCCAAGATCATAGTCTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115000.4