Pregenerated sensors for XPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028329Ensembl transcript IDs: ENSMUST00000030013.12, ENSMUST00000058232.11, ENSMUST00000132358.8, ENSMUST00000142380.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCATATTTATGTTGGTGAGTGGTTGTCTCTCTTTTCCATACACTaGTTCTTATTGCTCGCCGCAATTCTTCCCATAAAGAAGAAAGCT | + |
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Preference number: 1 (lower is better) Translates to: VHIYVGEWLSLFSIH*FLLLAAILPIKKKA Trigger: AGCTTTCTTCTTTATGGGAAGAATTGCGGCGAGCAATAAGAAGCAGTGTATGGAAAAGAGAGACAACCACTCACCAACATAAATATGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR-3UTR CCA 90 bp | ATGCTTCCGTGGATAAAAGCATGGGCCATGAAACCTGACCCCAGAGCTCCATCATCCACCAGAGCACCATaGCACACACCCATACACAAT | + |
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Preference number: 2 (lower is better) Translates to: MLPWIKAWAMKPDPRAPSSTRAP*HTPIHN Trigger: ATTGTGTATGGGTGTGTGCCATGGTGCTCTGGTGGA...TGATGGAGCTCTGGGGTCAGGTTTCATGGCCCATGCTTTTATCCACGGAAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| 3UTR-3UTR GCA 90 bp | CATATGTCAGTTCGTGGCCACACAAGGTACAAGTCTTGCGGTACATGTCATCTTGCGTCAGCTTCGCTGTaGATCAAGAGGAACCATGTC | + |
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Preference number: 2 (lower is better) Translates to: HMSVRGHTRYKSCGTCHLASASL*IKRNHV Trigger: GACATGGTTCCTCTTGATGCACAGCGAAGCTGACGC...AAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATATG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR CAA 90 bp | TGCTTCTTATTGCTCGCCGCAATTCTTCCCATAAAGAAGAAAGCTTaGCGTCAGCTTCGCTGTGCATCAAGAGGAACCATGTCCCAATTC | + |
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Preference number: 2 (lower is better) Translates to: CFLLLAAILPIKKKA*RQLRCASRGTMSQF Trigger: GAATTGGGACATGGTTCCTCTTGATGCACAGCGAAGCTGACGCAAAGCTTTCTTCTTTATGGGAAGAATTGCGGCGAGCAATAAGAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR CAA 90 bp | TATGTTGGTGAGTGGTTGTCTCTCTTTTCCATACACTGCTTCTTATaGCTCGCCGCAATTCTTCCCATAAAGAAGAAAGCTTTGCGTCAG | + |
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Preference number: 2 (lower is better) Translates to: YVGEWLSLFSIHCFL*LAAILPIKKKALRQ Trigger: CTGACGCAAAGCTTTCTTCTTTATGGGAAGAATTGCGGCGAGCAATAAGAAGCAGTGTATGGAAAAGAGAGACAACCACTCACCAACATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR-3UTR CCA 90 bp | ATTAAATTTAGAGAGTGGGTGATGCTTCCGTGGATAAAAGCATGGGCCATGAAACCCATACACAATGCATaGATAGATGATAGATGGACG | + |
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Preference number: 2 (lower is better) Translates to: IKFREWVMLPWIKAWAMKPIHNA*IDDRWT Trigger: CGTCCATCTATCATCTATCCATGCATTGTGTATGGG...TTTCATGGCCCATGCTTTTATCCACGGAAGCATCACCCACTCTCTAAATTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| 3UTR CCA 72 bp | TTTAGAGAGTGGGTGATGCTTCCGTGGATAAAAGCATaGGCCATGAAACCTGACCCCAGAGCTCCATCATTG | + |
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Preference number: 3 (lower is better) Translates to: FREWVMLPWIKA*AMKPDPRAPSL Trigger: CAATGATGGAGCTCTGGGGTCAGGTTTCATGGCCCATGCTTTTATCCACGGAAGCATCACCCACTCTCTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| 3UTR-3UTR CAA 90 bp | TGGCCACACAAGGTACAAGTCTTGCGGTACATGTCATCTTCTAAGTTTTCCTCTGCCTTTAGACTTGCTTaGTCTCCTCTCTGTTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: WPHKVQVLRYMSSSKFSSAFRLA*SPLCSE Trigger: CTCAGAACAGAGAGGAGACAAAGCAAGTCTAAAGGC...AGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR GCA 72 bp | TCCCATAAAGAAGAAAGCTTTGCGTCAGCTTCGCTGTaGATCAAGAGGAACCATGTCCCAATTCTTTCCAAC | + |
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Preference number: 3 (lower is better) Translates to: SHKEESFASASL*IKRNHVPILSN Trigger: GTTGGAAAGAATTGGGACATGGTTCCTCTTGATGCACAGCGAAGCTGACGCAAAGCTTTCTTCTTTATGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR GCA 72 bp | CATATGTCAGTTCGTGGCCACACAAGGTACAAGTCTTaGGGTACATGTCATCTTCTAAGTTTTCCTCTGGTC | + |
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Preference number: 3 (lower is better) Translates to: HMSVRGHTRYKS*GTCHLLSFPLV Trigger: GACCAGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR CCA 72 bp | GTGTTTATTAAATTTAGAGAGTGGGTGATGCTTCCGTaGATAAAAGCATGGGCCATGAAACCTGACCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: VFIKFREWVMLP*IKAWAMKPDPR Trigger: TCTGGGGTCAGGTTTCATGGCCCATGCTTTTATCCACGGAAGCATCACCCACTCTCTAAATTTAATAAACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| 3UTR-3UTR CAA 90 bp | TGGCCACACAAGGTACAAGTCTTGCGGTACATGTCATCTTCTAAGTTTTCCTCTTATGTTGGTGAGTGGTaGTCTCTCTTTTCCATACAC | + |
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Preference number: 3 (lower is better) Translates to: WPHKVQVLRYMSSSKFSSYVGEW*SLFSIH Trigger: GTGTATGGAAAAGAGAGACAACCACTCACCAACATA...AGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR GCA 72 bp | TATGTTGGTGAGTGGTTGTCTCTCTTTTCCATACACTaGTTCTTATTGCTCGCCGCAATTCTTCCCATAAAG | + |
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Preference number: 3 (lower is better) Translates to: YVGEWLSLFSIH*FLLLAAILPIK Trigger: CTTTATGGGAAGAATTGCGGCGAGCAATAAGAAGCAGTGTATGGAAAAGAGAGACAACCACTCACCAACATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CCA 90 bp | CAGTTACCCACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACACCCAGCAGCCAGCCGAGCCTaGCGCAGCATCAGTGCCCGC | + |
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Preference number: 4 (lower is better) Translates to: QLPTSVLCSPPEHHGTHPAASRA*RSISAR Trigger: GCGGGCACTGATGCTGCGCCAGGCTCGGCTGGCTGC...TGGGTGTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGTGGGTAACTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR GCA 90 bp | ACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACACCCATACACAATGCTGGCGCAGCATCAGTaGCCGCTGTCGCTTCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: TSVLCSPPEHHGTHPYTMLAQHQ*PLSLPL Trigger: GAGCGGAAGCGACAGCGGGCACTGATGCTGCGCCAG...CATTGTGTATGGGTGTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR CCA 90 bp | CCAGAGCTCCATCATTGTTGCCAGACCCCCATAGGAAAGAGAGCCAGTTACCCATCGCCCCACTGTGAATaGCGTGGGTTCTTCTTCACA | + |
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Preference number: 4 (lower is better) Translates to: PELHHCCQTPIGKRASYPSPHCE*RGFFFT Trigger: TGTGAAGAAGAACCCACGCCATTCACAGTGGGGCGA...TGGGTAACTGGCTCTCTTTCCTATGGGGGTCTGGCAACAATGATGGAGCTCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR TCA 90 bp | ACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACACCCATACACAATGTCTTCACAAGGAACCTaGGCGCTGGCTCTCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TSVLCSPPEHHGTHPYTMSSQGT*ALALSS Trigger: AGAAGAGAGAGCCAGCGCTCAGGTTCCTTGTGAAGA...CATTGTGTATGGGTGTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR CCA 90 bp | GGTTCTGGTGTCATTACAGATATCTCAGGAGCACTATACACTCGATCTGTGGTAGAGCTGCTTTTACACTaGCCACGCCTCCGGTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: GSGVITDISGALYTRSVVELLLH*PRLRWP Trigger: CGGCCACCGGAGGCGTGGCCAGTGTAAAAGCAGCTC...TACCACAGATCGAGTGTATAGTGCTCCTGAGATATCTGTAATGACACCAGAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR CCA 90 bp | CATTGTTGCCAGACCCCCATAGGAAAGAGAGCCAGTTACCCACAAGTGTTCTCTCAGGGAGCCATTCGGTaGAGAGGTTTGTCATCGAGG | + |
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Preference number: 4 (lower is better) Translates to: HCCQTPIGKRASYPQVFSQGAIR*RGLSSR Trigger: CCTCGATGACAAACCTCTCCACCGAATGGCTCCCTG...AGAGAACACTTGTGGGTAACTGGCTCTCTTTCCTATGGGGGTCTGGCAACAATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR GCA 90 bp | ATGCTTCCGTGGATAAAAGCATGGGCCATGAAACCTGACCCCAGAGCTCCATCACTGCCTCACTTCCTTTaGATCTTCCAGAGCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: MLPWIKAWAMKPDPRAPSLPHFL*IFQSFL Trigger: CAGGAAGCTCTGGAAGATGCAAAGGAAGTGAGGCAG...TGATGGAGCTCTGGGGTCAGGTTTCATGGCCCATGCTTTTATCCACGGAAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR CCA 90 bp | GAGCCAGTTACCCACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACAGTTGGCAGATCAAAGTaGTTCATAAGGTACGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: EPVTHKCSLLSTRAPWHTVGRSK*FIRYES Trigger: GGACTCGTACCTTATGAACCACTTTGATCTGCCAAC...TGTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGTGGGTAACTGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR TCA 90 bp | CAGTTACCCACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACACCCACTTCCTCTTCTAAAATaGAGCCACCTTTGGTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: QLPTSVLCSPPEHHGTHPLPLLK*SHLWCQ Trigger: TTGACACCAAAGGTGGCTTCATTTTAGAAGAGGAAG...TGGGTGTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGTGGGTAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR GCA 90 bp | GAGCCAGTTACCCACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACATTTTCTCGGTTTTCCTaGCTCACTTCCTTTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: EPVTHKCSLLSTRAPWHTFSRFS*LTSFAS Trigger: AGATGCAAAGGAAGTGAGGCAGGAAAACCGAGAAAA...TGTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGTGGGTAACTGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR GCA 90 bp | TGCCAGACCCCCATAGGAAAGAGAGCCAGTTACCCACAAGTGTTCTCTGCTCTCTTCAGAAGGTACTCTTaGTTCGCTTCTGTCTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: CQTPIGKRASYPQVFSALFRRYS*FASVLV Trigger: AACCAAGACAGAAGCGAAGCAAGAGTACCTTCTGAA...GAGAGCAGAGAACACTTGTGGGTAACTGGCTCTCTTTCCTATGGGGGTCTGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR GCA 90 bp | GTAAAATGGTTCTGGTGTCATTACAGATATCTCAGGAGCACTATACACTCGATCTCCAGGGCCCTGTTATaGCAGGGAGCCATTCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: VKWFWCHYRYLRSTIHSISRALL*QGAIRW Trigger: CCACCGAATGGCTCCCTGGCATAACAGGGCCCTGGA...GATCGAGTGTATAGTGCTCCTGAGATATCTGTAATGACACCAGAACCATTTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| 3UTR CAA 72 bp | TTGCTCGCCGCAATTCTTCCCATAAAGAAGAAAGCTTaGCGTCAGCTTCGCTGTGCATCAAGAGGAACCATG | + |
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Preference number: 4 (lower is better) Translates to: LLAAILPIKKKA*RQLRCASRGTM Trigger: CATGGTTCCTCTTGATGCACAGCGAAGCTGACGCAAAGCTTTCTTCTTTATGGGAAGAATTGCGGCGAGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CCA 90 bp | TGGCCACACAAGGTACAAGTCTTGCGGTACATGTCATCTTCTAAGTTTTCCTCTTCGCCCCACTGTGAATaGCGTGGGTTCTTCTTCACA | + |
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Preference number: 4 (lower is better) Translates to: WPHKVQVLRYMSSSKFSSSPHCE*RGFFFT Trigger: TGTGAAGAAGAACCCACGCCATTCACAGTGGGGCGA...AGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR TCA 90 bp | GAACCATGTCCCAATTCTTTCCAACTAAAAGCCTTTAGACTTGCTTTGTCTCCTTCTTCACAAGGAACCTaGGCGCTGGCTCTCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: EPCPNSFQLKAFRLALSPSSQGT*ALALSS Trigger: AGAAGAGAGAGCCAGCGCTCAGGTTCCTTGTGAAGA...AGGAGACAAAGCAAGTCTAAAGGCTTTTAGTTGGAAAGAATTGGGACATGGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CCA 90 bp | CATATGTCAGTTCGTGGCCACACAAGGTACAAGTCTTGCGGTACATGTCATCTTGTTGGCAGATCAAAGTaGTTCATAAGGTACGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: HMSVRGHTRYKSCGTCHLVGRSK*FIRYES Trigger: GGACTCGTACCTTATGAACCACTTTGATCTGCCAAC...AAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR TCA 90 bp | GTAAAATGGTTCTGGTGTCATTACAGATATCTCAGGAGCACTATACACTCGATCACGGGCCCTGGTTCATaGACAATGTTTCCAATCTCG | + |
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Preference number: 4 (lower is better) Translates to: VKWFWCHYRYLRSTIHSITGPGS*TMFPIS Trigger: CGAGATTGGAAACATTGTTCATGAACCAGGGCCCGT...GATCGAGTGTATAGTGCTCCTGAGATATCTGTAATGACACCAGAACCATTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR GCA 90 bp | TTTATGTTGGTGAGTGGTTGTCTCTCTTTTCCATACACTGCTTCTTATTGCTCGCTGCCTCACTTCCTTTaGATCTTCCAGAGCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: FMLVSGCLSFPYTASYCSLPHFL*IFQSFL Trigger: CAGGAAGCTCTGGAAGATGCAAAGGAAGTGAGGCAG...CGAGCAATAAGAAGCAGTGTATGGAAAAGAGAGACAACCACTCACCAACATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CCA 90 bp | GTAAAATGGTTCTGGTGTCATTACAGATATCTCAGGAGCACTATACACTCGATCCTCCATGACGGGCCCTaGTTCATGAACAATGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: VKWFWCHYRYLRSTIHSILHDGP*FMNNVS Trigger: GGAAACATTGTTCATGAACCAGGGCCCGTCATGGAG...GATCGAGTGTATAGTGCTCCTGAGATATCTGTAATGACACCAGAACCATTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR CCA 90 bp | TTGTCTCTCTTTTCCATACACTGCTTCTTATTGCTCGCCGCAATTCTTCCCATAGCAGCTGTCACACGTTaGCAGATCAAAGTGGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: LSLFSIHCFLLLAAILPIAAVTR*QIKVVH Trigger: ATGAACCACTTTGATCTGCCAACGTGTGACAGCTGC...TATGGGAAGAATTGCGGCGAGCAATAAGAAGCAGTGTATGGAAAAGAGAGACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CCA 90 bp | AGGTACAAGTCTTGCGGTACATGTCATCTTCTAAGTTTTCCTCTGGTCCATATTTCTTCCAGAGCTTCCTaGCTACCCCACACTTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: RYKSCGTCHLLSFPLVHISSRAS*LPHTSR Trigger: TCTTGAAGTGTGGGGTAGCCAGGAAGCTCTGGAAGA...AATATGGACCAGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| 3UTR CAA 72 bp | TCATATGTCAGTTCGTGGCCACACAAGGTACAAGTCTaGCGGTACATGTCATCTTCTAAGTTTTCCTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SYVSSWPHKVQV*RYMSSSKFSSG Trigger: ACCAGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR GCA 90 bp | TGGCCACACAAGGTACAAGTCTTGCGGTACATGTCATCTTCTAAGTTTTCCTCTTTCAGAAGGTACTCTTaGTTCGCTTCTGTCTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: WPHKVQVLRYMSSSKFSSFRRYS*FASVLV Trigger: AACCAAGACAGAAGCGAAGCAAGAGTACCTTCTGAA...AGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CCA 90 bp | ATTAAATTTAGAGAGTGGGTGATGCTTCCGTGGATAAAAGCATGGGCCATGAAAGCAGCTGTCACACGTTaGCAGATCAAAGTGGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: IKFREWVMLPWIKAWAMKAAVTR*QIKVVH Trigger: ATGAACCACTTTGATCTGCCAACGTGTGACAGCTGC...TTTCATGGCCCATGCTTTTATCCACGGAAGCATCACCCACTCTCTAAATTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| 3UTR CAA 72 bp | GAGTGGTTGTCTCTCTTTTCCATACACTGCTTCTTATaGCTCGCCGCAATTCTTCCCATAAAGAAGAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: EWLSLFSIHCFL*LAAILPIKKKA Trigger: AGCTTTCTTCTTTATGGGAAGAATTGCGGCGAGCAATAAGAAGCAGTGTATGGAAAAGAGAGACAACCACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR GCA 90 bp | AAGGTACAAGTCTTGCGGTACATGTCATCTTCTAAGTTTTCCTCTGGTCCATATTTTTCTCGGTTTTCCTaGCTCACTTCCTTTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: KVQVLRYMSSSKFSSGPYFSRFS*LTSFAS Trigger: AGATGCAAAGGAAGTGAGGCAGGAAAACCGAGAAAA...ATATGGACCAGAGGAAAACTTAGAAGATGACATGTACCGCAAGACTTGTACCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CCA 90 bp | AAAATTGTAAAATGGTTCTGGTGTCATTACAGATATCTCAGGAGCACTATACACTCTTCCAGAGCTTCCTaGCTACCCCACACTTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: KIVKWFWCHYRYLRSTIHSSRAS*LPHTSR Trigger: TCTTGAAGTGTGGGGTAGCCAGGAAGCTCTGGAAGA...GTGTATAGTGCTCCTGAGATATCTGTAATGACACCAGAACCATTTTACAATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS GCA 90 bp | CGCGGGGTAGGGCCGCGCAGCCAGCCGAGCCTGGCGCAGCATCAGTaGCCGCTGTCGCTTCCGCTCCACGCTCGCGCGTACGGCGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: RGVGPRSQPSLAQHQ*PLSLPLHARAYGGR Trigger: CCGGCCGCCGTACGCGCGAGCGTGGAGCGGAAGCGACAGCGGGCACTGATGCTGCGCCAGGCTCGGCTGGCTGCGCGGCCCTACCCCGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS GCA 90 bp | CGCTGTCGCTTCCGCTCCACGCTCGCGCGTACGGCGGCCGGCAGCTaGGCGGGCTCGTCCGCGGCCACGGGCTCAGGTGACGTCTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: RCRFRSTLARTAAGS*AGSSAATGSGDVCF Trigger: AAAGCAGACGTCACCTGAGCCCGTGGCCGCGGACGAGCCCGCGCAGCTGCCGGCCGCCGTACGCGCGAGCGTGGAGCGGAAGCGACAGCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS GCA 90 bp | CACGCAGGCCAGCGTTCACGCCCCTCTCCTTACCTACAGAGACTGTaGTCTGTGATCTCCGTGACAGGAAATCCGGCCACTTACCTTTTA | + |
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Preference number: 5 (lower is better) Translates to: HAGQRSRPSPYLQRL*SVISVTGNPATYLL Trigger: TAAAAGGTAAGTGGCCGGATTTCCTGTCACGGAGATCACAGAGCACAGTCTCTGTAGGTAAGGAGAGGGGCGTGAACGCTGGCCTGCGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142380.2 |
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| CDS-3UTR CAA 90 bp | AGAGCCAGTTACCCACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACTGCAGCTGTCACACGTaGGCAGATCAAAGTGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: RASYPQVFSALHQSTMAHCSCHT*ADQSGS Trigger: TGAACCACTTTGATCTGCCAACGTGTGACAGCTGCA...GTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGTGGGTAACTGGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS TCA 90 bp | TATCGCCCCACTGTGAATGGCGTGGGTTCTTCTTCACAAGGAACCTaGGCGCTGGCTCTCTCTTCTCTAGATCACAGTCCTTCAGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: YRPTVNGVGSSSQGT*ALALSSLDHSPSEG Trigger: ACCTTCTGAAGGACTGTGATCTAGAGAAGAGAGAGCCAGCGCTCAGGTTCCTTGTGAAGAAGAACCCACGCCATTCACAGTGGGGCGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000132358.8 ENSMUST00000142380.2 |
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| CDS-3UTR CAA 90 bp | AGAGCCAGTTACCCACAAGTGTTCTCTGCTCTCCACCAGAGCACCATGGCACACTGCTTCGCTTCTGTCTaGGTTATAAGCTTGTGTTTA | + |
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Preference number: 5 (lower is better) Translates to: RASYPQVFSALHQSTMAHCFASV*VISLCL Trigger: TAAACACAAGCTTATAACCAAGACAGAAGCGAAGCA...GTGTGCCATGGTGCTCTGGTGGAGAGCAGAGAACACTTGTGGGTAACTGGCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR CAA 90 bp | TATGTCAGTTCGTGGCCACACAAGGTACAAGTCTTGCGGTACATGTCATCTTCTCCTGCCTCACTTCCTTaGCATCTTCCAGAGCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: YVSSWPHKVQVLRYMSSSPASLP*HLPELP Trigger: AGGAAGCTCTGGAAGATGCAAAGGAAGTGAGGCAGG...AGAAGATGACATGTACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS CCA 90 bp | CCCGCATTCTTCACAGATGGTGTAATCAAACTCCATGACGGGCCCTaGTTCATGAACAATGTTTCCAATCTCGTGTTTCTCTTCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: PAFFTDGVIKLHDGP*FMNNVSNLVFLFFL Trigger: GAGGAAGAAGAGAAACACGAGATTGGAAACATTGTTCATGAACCAGGGCCCGTCATGGAGTTTGATTACACCATCTGTGAAGAATGCGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS-3UTR CAA 90 bp | GTGATGCTTCCGTGGATAAAAGCATGGGCCATGAAACCTGACCCCAGAGCTCCAGTCTTGGTTATAAGCTaGTGTTTATCATCAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: VMLPWIKAWAMKPDPRAPVLVIS*CLSSAS Trigger: AGATGCTGATGATAAACACAAGCTTATAACCAAGAC...TGGAGCTCTGGGGTCAGGTTTCATGGCCCATGCTTTTATCCACGGAAGCATCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS-3UTR CAA 90 bp | TTGTCTCTCTTTTCCATACACTGCTTCTTATTGCTCGCCGCAATTCTTCCCATATGCAGCTGTCACACGTaGGCAGATCAAAGTGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: LSLFSIHCFLLLAAILPICSCHT*ADQSGS Trigger: TGAACCACTTTGATCTGCCAACGTGTGACAGCTGCA...TATGGGAAGAATTGCGGCGAGCAATAAGAAGCAGTGTATGGAAAAGAGAGACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS-3UTR CAA 90 bp | ATTAAATTTAGAGAGTGGGTGATGCTTCCGTGGATAAAAGCATGGGCCATGAAACCTGCCTCACTTCCTTaGCATCTTCCAGAGCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: IKFREWVMLPWIKAWAMKPASLP*HLPELP Trigger: AGGAAGCTCTGGAAGATGCAAAGGAAGTGAGGCAGG...TTTCATGGCCCATGCTTTTATCCACGGAAGCATCACCCACTCTCTAAATTTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS GCA 90 bp | GCTGGCTCTCTCTTCTCTAGATCACAGTCCTTCAGAAGGTACTCTTaGTTCGCTTCTGTCTTGGTTATAAGCTTGTGTTTATCATCAGCA | + |
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Preference number: 5 (lower is better) Translates to: AGSLFSRSQSFRRYS*FASVLVISLCLSSA Trigger: TGCTGATGATAAACACAAGCTTATAACCAAGACAGAAGCGAAGCAAGAGTACCTTCTGAAGGACTGTGATCTAGAGAAGAGAGAGCCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000132358.8 ENSMUST00000142380.2 |
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| CDS-3UTR CAA 90 bp | TGTCCCAATTCTTTCCAACTAAAAGCCTTTAGACTTGCTTTGTCTCCTCTCTGTGTCTTGGTTATAAGCTaGTGTTTATCATCAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: CPNSFQLKAFRLALSPLCVLVIS*CLSSAS Trigger: AGATGCTGATGATAAACACAAGCTTATAACCAAGAC...ACAGAGAGGAGACAAAGCAAGTCTAAAGGCTTTTAGTTGGAAAGAATTGGGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132358.8 |
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| CDS GCA 72 bp | TTCCGCTCCACGCTCGCGCGTACGGCGGCCGGCAGCTaGGCGGGCTCGTCCGCGGCCACGGGCTCAGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: FRSTLARTAAGS*AGSSAATGSGD Trigger: GTCACCTGAGCCCGTGGCCGCGGACGAGCCCGCGCAGCTGCCGGCCGCCGTACGCGCGAGCGTGGAGCGGAA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS GCA 72 bp | GGGCCGCGCAGCCAGCCGAGCCTGGCGCAGCATCAGTaGCCGCTGTCGCTTCCGCTCCACGCTCGCGCGTAC | + |
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Preference number: 6 (lower is better) Translates to: GPRSQPSLAQHQ*PLSLPLHARAY Trigger: GTACGCGCGAGCGTGGAGCGGAAGCGACAGCGGGCACTGATGCTGCGCCAGGCTCGGCTGGCTGCGCGGCCC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS GCA 72 bp | AATGAAGCCACCTTTGGTGTCAATCATTTTGGGAGCTaGTTTTACACTGGCCACGCCTCCGGTGGCCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: NEATFGVNHFGS*FYTGHASGGRR Trigger: GCGGCGGCCACCGGAGGCGTGGCCAGTGTAAAAGCAGCTCCCAAAATGATTGACACCAAAGGTGGCTTCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS GCA 72 bp | CAGCGTTCACGCCCCTCTCCTTACCTACAGAGACTGTaGTCTGTGATCTCCGTGACAGGAAATCCGGCCACT | + |
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Preference number: 6 (lower is better) Translates to: QRSRPSPYLQRL*SVISVTGNPAT Trigger: AGTGGCCGGATTTCCTGTCACGGAGATCACAGAGCACAGTCTCTGTAGGTAAGGAGAGGGGCGTGAACGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142380.2 |
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| CDS CAA 90 bp | TCTTCTTCCTCTTCTAAAATGAAGCCACCTTTGGTGTCAATCATTTaGGGAGCTGCTTTTACACTGGCCACGCCTCCGGTGGCCGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: SSSSSKMKPPLVSII*GAAFTLATPPVAAA Trigger: GGCGGCGGCCACCGGAGGCGTGGCCAGTGTAAAAGCAGCTCCCAAAATGATTGACACCAAAGGTGGCTTCATTTTAGAAGAGGAAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS CCA 72 bp | TTTTCCAGGGCCCTGTTATGCCAGGGAGCCATTCGGTaGAGAGGTTTGTCATCGAGGAGAATCTTCACTGCA | + |
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Preference number: 6 (lower is better) Translates to: FSRALLCQGAIR*RGLSSRRIFTA Trigger: TGCAGTGAAGATTCTCCTCGATGACAAACCTCTCCACCGAATGGCTCCCTGGCATAACAGGGCCCTGGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS TCA 72 bp | ACTGTGAATGGCGTGGGTTCTTCTTCACAAGGAACCTaGGCGCTGGCTCTCTCTTCTCTAGATCACAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: TVNGVGSSSQGT*ALALSSLDHSP Trigger: AGGACTGTGATCTAGAGAAGAGAGAGCCAGCGCTCAGGTTCCTTGTGAAGAAGAACCCACGCCATTCACAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000132358.8 ENSMUST00000142380.2 |
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| CDS TCA 72 bp | AAACGATGGCCTTTATTAATGAGGTACCGTGAGGGTTaGCCCAAGCCTCATACACCAAAGCACGCAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: KRWPLLMRYREG*PKPHTPKHAGQ Trigger: CTGGCCTGCGTGCTTTGGTGTATGAGGCTTGGGTCAACCCTCACGGTACCTCATTAATAAAGGCCATCGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142380.2 |
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| CDS CAA 72 bp | GCCCTGTTATGCCAGGGAGCCATTCGGTGGAGAGGTTaGTCATCGAGGAGAATCTTCACTGCATCATCAAGT | + |
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Preference number: 6 (lower is better) Translates to: ALLCQGAIRWRG*SSRRIFTASSS Trigger: ACTTGATGATGCAGTGAAGATTCTCCTCGATGACAAACCTCTCCACCGAATGGCTCCCTGGCATAACAGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS CAA 90 bp | TTTTCCAGGGCCCTGTTATGCCAGGGAGCCATTCGGTGGAGAGGTTaGTCATCGAGGAGAATCTTCACTGCATCATCAAGTCCTACTTTT | + |
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Preference number: 6 (lower is better) Translates to: FSRALLCQGAIRWRG*SSRRIFTASSSPTF Trigger: AAAAGTAGGACTTGATGATGCAGTGAAGATTCTCCTCGATGACAAACCTCTCCACCGAATGGCTCCCTGGCATAACAGGGCCCTGGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058232.11 |
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| CDS CAA 72 bp | TCTTCTAAAATGAAGCCACCTTTGGTGTCAATCATTTaGGGAGCTGCTTTTACACTGGCCACGCCTCCGGTG | + |
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Preference number: 6 (lower is better) Translates to: SSKMKPPLVSII*GAAFTLATPPV Trigger: CACCGGAGGCGTGGCCAGTGTAAAAGCAGCTCCCAAAATGATTGACACCAAAGGTGGCTTCATTTTAGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS CAA 90 bp | TCCTTCAGAAGGTACTCTTGCTTCGCTTCTGTCTTGGTTATAAGCTaGTGTTTATCATCAGCATCTCTGCAGCTGTCACACGTTGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SFRRYSCFASVLVIS*CLSSASLQLSHVGR Trigger: TCTGCCAACGTGTGACAGCTGCAGAGATGCTGATGATAAACACAAGCTTATAACCAAGACAGAAGCGAAGCAAGAGTACCTTCTGAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000132358.8 ENSMUST00000142380.2 |
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| CDS CCA 72 bp | GTGTTTATCATCAGCATCTCTGCAGCTGTCACACGTTaGCAGATCAAAGTGGTTCATAAGGTACGAGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: VFIISISAAVTR*QIKVVHKVRVH Trigger: ATGGACTCGTACCTTATGAACCACTTTGATCTGCCAACGTGTGACAGCTGCAGAGATGCTGATGATAAACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000132358.8 ENSMUST00000142380.2 |
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| CDS CCA 72 bp | TTCACAGATGGTGTAATCAAACTCCATGACGGGCCCTaGTTCATGAACAATGTTTCCAATCTCGTGTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: FTDGVIKLHDGP*FMNNVSNLVFL Trigger: GAGAAACACGAGATTGGAAACATTGTTCATGAACCAGGGCCCGTCATGGAGTTTGATTACACCATCTGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000142380.2 |
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| CDS CAA 72 bp | CAGTCCTTCAGAAGGTACTCTTGCTTCGCTTCTGTCTaGGTTATAAGCTTGTGTTTATCATCAGCATCTCTG | + |
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Preference number: 6 (lower is better) Translates to: QSFRRYSCFASV*VISLCLSSASL Trigger: CAGAGATGCTGATGATAAACACAAGCTTATAACCAAGACAGAAGCGAAGCAAGAGTACCTTCTGAAGGACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000132358.8 ENSMUST00000142380.2 |
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| CDS GCA 72 bp | CTCTTCTCTAGATCACAGTCCTTCAGAAGGTACTCTTaGTTCGCTTCTGTCTTGGTTATAAGCTTGTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: LFSRSQSFRRYS*FASVLVISLCL Trigger: TAAACACAAGCTTATAACCAAGACAGAAGCGAAGCAAGAGTACCTTCTGAAGGACTGTGATCTAGAGAAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030013.12 ENSMUST00000058232.11 ENSMUST00000132358.8 ENSMUST00000142380.2 |
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