Pregenerated sensors for XLR5C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067764Ensembl transcript IDs: ENSMUST00000088450.4, ENSMUST00000114503.9
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATaGAACGGTCTCTGTGACCTCATGAGAAATGAAAGCATGCACAGA | + |
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Preference number: 1 (lower is better) Translates to: FSKSRWHVGLIFPLQ*NGLCDLMRNESMHR Trigger: TCTGTGCATGCTTTCATTTCTCATGAGGTCACAGAGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| 3UTR-3UTR TCA 90 bp | CTCACAGAGCTGCTGGGAGTTCACTTAATGATTAACAGTGTCTCAGTCTCAATTAGAAAGATGCTGCACTaGCTACTACCAACATCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LTELLGVHLMINSVSVSIRKMLH*LLPTSS Trigger: AGAAGATGTTGGTAGTAGTCAGTGCAGCATCTTTCT...AATTGAGACTGAGACACTGTTAATCATTAAGTGAACTCCCAGCAGCTCTGTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| 3UTR CCA 72 bp | GATGCTGCACTGACTACTACCAACATCTTCTTAGCATaGCTAACGCTTCCTTCCCTGTGTATCCTATGTGTG | + |
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Preference number: 3 (lower is better) Translates to: DAALTTTNIFLA*LTLPSLCILCV Trigger: CACACATAGGATACACAGGGAAGGAAGCGTTAGCCATGCTAAGAAGATGTTGGTAGTAGTCAGTGCAGCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| 3UTR CCA 72 bp | AAACATGAGTGTGTTCAGCAAGTCTCGGTGGCATGTTaGGTTGATTTTCCCATTGCAATGGAACGGTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: KHECVQQVSVAC*VDFPIAMERSL Trigger: CAGAGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTGAACACACTCATGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| 3UTR CCA 72 bp | GAGCACACAAACATGAGTGTGTTCAGCAAGTCTCGGTaGCATGTTGGGTTGATTTTCCCATTGCAATGGAAC | + |
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Preference number: 3 (lower is better) Translates to: EHTNMSVFSKSR*HVGLIFPLQWN Trigger: GTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTGAACACACTCATGTTTGTGTGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR TCA 90 bp | CTGGGTGTCTTTGGGAAATGCCACAGCCCCACAACTAGCACAGAGTCAACACATCTGCATCTGAGTTCTTaGAGTCATCTGATGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: LGVFGKCHSPTTSTESTHLHLSS*SHLMGG Trigger: CCCTCCCATCAGATGACTTCAAGAACTCAGATGCAG...ATGTGTTGACTCTGTGCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR GCA 90 bp | GTCTGGGTGTCTTTGGGAAATGCCACAGCCCCACAACTAGCACAGAGTCAACACGTACCCTCTGGTGCTTaGCACTTTTCTTCATGTCCT | + |
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Preference number: 4 (lower is better) Translates to: VWVSLGNATAPQLAQSQHVPSGA*HFSSCP Trigger: AGGACATGAAGAAAAGTGGCAAGCACCAGAGGGTAC...GTGTTGACTCTGTGCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACCCAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR CCA 90 bp | GAGTGTGTTCAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATGTCTGATCCTGAAGAATaGCTGCCCATCCCACTGGTA | + |
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Preference number: 4 (lower is better) Translates to: ECVQQVSVACWVDFPIAMSDPEE*LPIPLV Trigger: TACCAGTGGGATGGGCAGCCATTCTTCAGGATCAGA...CATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTGAACACACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR CCA 90 bp | CTACTCACAGAGCTGCTGGGAGTTCACTTAATGATTAACAGTGTCTCAGTCTCACTGAAGTATTCTTCTTaGTCCCTTGTTCTGTCCATC | + |
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Preference number: 4 (lower is better) Translates to: LLTELLGVHLMINSVSVSLKYSS*SLVLSI Trigger: GATGGACAGAACAAGGGACCAAGAAGAATACTTCAG...TGAGACTGAGACACTGTTAATCATTAAGTGAACTCCCAGCAGCTCTGTGAGTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR CCA 90 bp | TTCCCATTGCAATGGAACGGTCTCTGTGACCTCATGAGAAATGAAAGCATGCACGGTATGTTTCAACCATaGATATGTCTTGATCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: FPLQWNGLCDLMRNESMHGMFQP*ICLDLG Trigger: CCCAAGATCAAGACATATCCATGGTTGAAACATACC...GTGCATGCTTTCATTTCTCATGAGGTCACAGAGACCGTTCCATTGCAATGGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR CCA 90 bp | AGTAAAGAGAAAGATGCTGCACTGACTACTACCAACATCTTCTTAGCATGGCTACTCTGTTCTGCACCTTaGAGATTTCCTTCTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: SKEKDAALTTTNIFLAWLLCSAP*RFPSPQ Trigger: TTGTGGAGAAGGAAATCTCCAAGGTGCAGAACAGAG...TAGCCATGCTAAGAAGATGTTGGTAGTAGTCAGTGCAGCATCTTTCTCTTTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR CCA 90 bp | CACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATGCTTTCAATCCGTTTACTCAAGTCGTTaGCTTTCTTCAAAAATGTGT | + |
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Preference number: 4 (lower is better) Translates to: HWSHKCLHRYRLIKCFQSVYSSR*LSSKMC Trigger: ACACATTTTTGAAGAAAGCCAACGACTTGAGTAAAC...GGATTGAAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS-3UTR CCA 90 bp | AATGCTTTCAATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGAGTCTGCTTTCAAAATGCTCTaGAGGTTTTCATTCAGACTT | + |
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Preference number: 4 (lower is better) Translates to: NAFNPKVTSVEDSFENESAFKML*RFSFRL Trigger: AAGTCTGAATGAAAACCTCCAGAGCATTTTGAAAGC...AGACTCATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATTGAAAGCATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS TCA 90 bp | AGAAGTCCTGTACCATCATCACCTTTGAAATCCTGCATCTTCTTCTaGACAGGCTCCCTGGCCTCTTGCATGTCTGATCCTGAAGAATGG | + |
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Preference number: 5 (lower is better) Translates to: RSPVPSSPLKSCIFF*TGSLASCMSDPEEW Trigger: CCATTCTTCAGGATCAGACATGCAAGAGGCCAGGGAGCCTGTTCAGAAGAAGATGCAGGATTTCAAAGGTGATGATGGTACAGGACTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS CCA 90 bp | TCTGAGTTCTTGAAGTCATCTGATGGGAGGGTCTTATGTACCCTCTaGTGCTTGCCACTTTTCTTCATGTCCTTCTGTTCCTTGTTTGAC | + |
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Preference number: 5 (lower is better) Translates to: SEFLKSSDGRVLCTL*CLPLFFMSFCSLFD Trigger: GTCAAACAAGGAACAGAAGGACATGAAGAAAAGTGGCAAGCACCAGAGGGTACATAAGACCCTCCCATCAGATGACTTCAAGAACTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS-3UTR CAA 90 bp | CTCACAGAGCTGCTGGGAGTTCACTTAATGATTAACAGTGTCTCAGTCTCAATTACTGCATCTGAGTTCTaGAAGTCATCTGATGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LTELLGVHLMINSVSVSITASEF*KSSDGR Trigger: CCTCCCATCAGATGACTTCAAGAACTCAGATGCAGT...AATTGAGACTGAGACACTGTTAATCATTAAGTGAACTCCCAGCAGCTCTGTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS TCA 90 bp | AATCTTTCACAGTACAGAGACTTAAGCTCCTGCCTTGAATTCTGCTaGGCTTTCAAAATGCTCTGGAGGTTTTCATTCAGACTTCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: NLSQYRDLSSCLEFC*AFKMLWRFSFRLLK Trigger: TTTCAGAAGTCTGAATGAAAACCTCCAGAGCATTTTGAAAGCTCAGCAGAATTCAAGGCAGGAGCTTAAGTCTCTGTACTGTGAAAGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS GCA 90 bp | TTGGTTTCATGGTCCTCTATAGCCGTCTGTAAAATCTTCATTTGCTaGTGGGTTATAAAACTGAAGTATTCTTCTTGGTCCCTTGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LVSWSSIAVCKIFIC*WVIKLKYSSWSLVL Trigger: CAGAACAAGGGACCAAGAAGAATACTTCAGTTTTATAACCCAGCAGCAAATGAAGATTTTACAGACGGCTATAGAGGACCATGAAACCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS CAA 72 bp | GAATGGCTGCCCATCCCACTGGTACCAACTGCTGGTTaGTCAGCAGGGTTAACTGCATCTGAGTTCTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: EWLPIPLVPTAG*SAGLTASEFLK Trigger: CTTCAAGAACTCAGATGCAGTTAACCCTGCTGACAAACCAGCAGTTGGTACCAGTGGGATGGGCAGCCATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS CAA 90 bp | GTACCAACTGCTGGTTTGTCAGCAGGGTTAACTGCATCTGAGTTCTaGAAGTCATCTGATGGGAGGGTCTTATGTACCCTCTGGTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VPTAGLSAGLTASEF*KSSDGRVLCTLWCL Trigger: CAAGCACCAGAGGGTACATAAGACCCTCCCATCAGATGACTTCAAGAACTCAGATGCAGTTAACCCTGCTGACAAACCAGCAGTTGGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS CAA 90 bp | GATCCTGAAGAATGGCTGCCCATCCCACTGGTACCAACTGCTGGTTaGTCAGCAGGGTTAACTGCATCTGAGTTCTTGAAGTCATCTGAT | + |
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Preference number: 6 (lower is better) Translates to: DPEEWLPIPLVPTAG*SAGLTASEFLKSSD Trigger: ATCAGATGACTTCAAGAACTCAGATGCAGTTAACCCTGCTGACAAACCAGCAGTTGGTACCAGTGGGATGGGCAGCCATTCTTCAGGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS CAA 72 bp | GCTGGTTTGTCAGCAGGGTTAACTGCATCTGAGTTCTaGAAGTCATCTGATGGGAGGGTCTTATGTACCCTC | + |
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Preference number: 6 (lower is better) Translates to: AGLSAGLTASEF*KSSDGRVLCTL Trigger: GAGGGTACATAAGACCCTCCCATCAGATGACTTCAAGAACTCAGATGCAGTTAACCCTGCTGACAAACCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS CCA 72 bp | TTGAAGTCATCTGATGGGAGGGTCTTATGTACCCTCTaGTGCTTGCCACTTTTCTTCATGTCCTTCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LKSSDGRVLCTL*CLPLFFMSFCS Trigger: GGAACAGAAGGACATGAAGAAAAGTGGCAAGCACCAGAGGGTACATAAGACCCTCCCATCAGATGACTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS CAA 72 bp | TCATCTGATGGGAGGGTCTTATGTACCCTCTGGTGCTaGCCACTTTTCTTCATGTCCTTCTGTTCCTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SSDGRVLCTLWC*PLFFMSFCSLF Trigger: AAACAAGGAACAGAAGGACATGAAGAAAAGTGGCAAGCACCAGAGGGTACATAAGACCCTCCCATCAGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS TCA 72 bp | CAGTACAGAGACTTAAGCTCCTGCCTTGAATTCTGCTaGGCTTTCAAAATGCTCTGGAGGTTTTCATTCAGA | + |
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Preference number: 6 (lower is better) Translates to: QYRDLSSCLEFC*AFKMLWRFSFR Trigger: TCTGAATGAAAACCTCCAGAGCATTTTGAAAGCTCAGCAGAATTCAAGGCAGGAGCTTAAGTCTCTGTACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS TCA 72 bp | AAATCTTTCACAGTACAGAGACTTAAGCTCCTGCCTTaGATTCTGCTGAGCTTTCAAAATGCTCTGGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: KSFTVQRLKLLP*ILLSFQNALEV Trigger: AACCTCCAGAGCATTTTGAAAGCTCAGCAGAATTCAAGGCAGGAGCTTAAGTCTCTGTACTGTGAAAGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS TCA 72 bp | TTTCAACCATGGATATGTCTTGATCTTGGGTTTCCATaGTTACTCTGTTCTGCACCTTGGAGATTTCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: FQPWICLDLGFP*LLCSAPWRFPS Trigger: AGAAGGAAATCTCCAAGGTGCAGAACAGAGTAATCATGGAAACCCAAGATCAAGACATATCCATGGTTGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114503.9 |
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| CDS GCA 72 bp | TGGTCCTCTATAGCCGTCTGTAAAATCTTCATTTGCTaGTGGGTTATAAAACTGAAGTATTCTTCTTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: WSSIAVCKIFIC*WVIKLKYSSWS Trigger: GGACCAAGAAGAATACTTCAGTTTTATAACCCAGCAGCAAATGAAGATTTTACAGACGGCTATAGAGGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS TCA 72 bp | CTTTCAAAATGCTCTGGAGGTTTTCATTCAGACTTCTaGAAGAGGCATTTACATCCTCTTCAAACTGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSKCSGGFHSDF*KRHLHPLQTVS Trigger: GGAAACAGTTTGAAGAGGATGTAAATGCCTCTTTCAGAAGTCTGAATGAAAACCTCCAGAGCATTTTGAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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| CDS GCA 72 bp | TCATGGTCCTCTATAGCCGTCTGTAAAATCTTCATTTaGTGCTGGGTTATAAAACTGAAGTATTCTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: SWSSIAVCKIFI*CWVIKLKYSSW Trigger: CCAAGAAGAATACTTCAGTTTTATAACCCAGCAGCAAATGAAGATTTTACAGACGGCTATAGAGGACCATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088450.4 ENSMUST00000114503.9 |
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