Pregenerated sensors for XLR5B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072479Ensembl transcript IDs: ENSMUST00000097221.4, ENSMUST00000114518.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTTGGAACAGTGACAGAGAATCAACCACAAAGTCAAATGACATTTaGTTCCAAAATGTAATTGCCACTACTGGGCAGAATGAATCTCCC | + |
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Preference number: 1 (lower is better) Translates to: LWNSDRESTTKSNDI*FQNVIATTGQNESP Trigger: GGGAGATTCATTCTGCCCAGTAGTGGCAATTACATTTTGGAAGCAAATGTCATTTGACTTTGTGGTTGATTCTCTGTCACTGTTCCAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| 3UTR TCA 72 bp | TTGCTTCCAAAATGTAATTGCCACTACTGGGCAGAATaGATCTCCCTTGCTGTCATGGGCCTGGATGATCCA | + |
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Preference number: 3 (lower is better) Translates to: LLPKCNCHYWAE*ISLAVMGLDDP Trigger: TGGATCATCCAGGCCCATGACAGCAAGGGAGATTCATTCTGCCCAGTAGTGGCAATTACATTTTGGAAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| 3UTR GCA 72 bp | ACAGCTTTGAAAATGAGTCTGGGTGTCTTTGGGAAATaGCACAGCCCCACAACTAGCATAGAGTCAACACAT | + |
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Preference number: 3 (lower is better) Translates to: TALKMSLGVFGK*HSPTTSIESTH Trigger: ATGTGTTGACTCTATGCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACCCAGACTCATTTTCAAAGCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR GCA 90 bp | CAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATGGAACGGTCTGTACCCTCTGGTGCTTaGCACTTTTCTTCATGGCCT | + |
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Preference number: 4 (lower is better) Translates to: QQVSVACWVDFPIAMERSVPSGA*HFSSWP Trigger: AGGCCATGAAGAAAAGTGGCAAGCACCAGAGGGTAC...AGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | CAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATGGAACGGTCTCTTCATCTGAGTTCTTaGAGTCATCTGATGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: QQVSVACWVDFPIAMERSLHLSS*SHLMGG Trigger: CCCTCCCATCAGATGACTTCAAGAACTCAGATGAAG...AGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | AGTAAAGAGAAAGGAGCTGCACTGGCTACTACCAACATCTTCTTAGCATGGCTATCCTGCATCTTCTTCTaGACAGGCTCCCTGGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SKEKGAALATTNIFLAWLSCIFF*TGSLAS Trigger: AGAGGCCAGGGAGCCTGTTCAGAAGAAGATGCAGGA...TAGCCATGCTAAGAAGATGTTGGTAGTAGCCAGTGCAGCTCCTTTCTCTTTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | ATGAGTCTGGGTGTCTTTGGGAAATGCCACAGCCCCACAACTAGCATAGAGTCATGCCTTGAATTCTGCTaGGCTTTCAAAATGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: MSLGVFGKCHSPTTSIESCLEFC*AFKMLW Trigger: CCAGAGCATTTTGAAAGCTCAGCAGAATTCAAGGCA...TGACTCTATGCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACCCAGACTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | CAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATGGAACGGTCTCTTAAGCTCCTGCCTTaGATTCTGCTGAGCTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: QQVSVACWVDFPIAMERSLKLLP*ILLSFQ Trigger: TTGAAAGCTCAGCAGAATTCAAGGCAGGAGCTTAAG...AGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | CAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATGGAACGGTCTGATCTTGGGTTTCCATaGTTACTCTGTTCTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: QQVSVACWVDFPIAMERSDLGFP*LLCSAP Trigger: AGGTGCAGAACAGAGTAATCATGGAAACCCAAGATC...AGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | ATGAGTCTGGGTGTCTTTGGGAAATGCCACAGCCCCACAACTAGCATAGAGTCATCATGGATCAGGGACTaGAGGTATGTTTCAACCATG | + |
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Preference number: 4 (lower is better) Translates to: MSLGVFGKCHSPTTSIESSWIRD*RYVSTM Trigger: CATGGTTGAAACATACCTTCAGTCCCTGATCCATGA...TGACTCTATGCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACCCAGACTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CCA 90 bp | CAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATGGAACGGTCTGGTATGTTTCAACCATaGCTATGTCTTGATCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: QQVSVACWVDFPIAMERSGMFQP*LCLDLG Trigger: CCCAAGATCAAGACATAGCCATGGTTGAAACATACC...AGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | CAGCAAGTCTCGGTGGCATGTTGGGTTGATTTTCCCATTGCAATGGAACGGTCTTACCATCATCACCTTTaGAATCCTGCATCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QQVSVACWVDFPIAMERSYHHHL*NPASSS Trigger: AGAAGAAGATGCAGGATTTCAAAGGTGATGATGGTA...AGACCGTTCCATTGCAATGGGAAAATCAACCCAACATGCCACCGAGACTTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR GCA 90 bp | AAAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATGCTTTCACCCACTGGTACCAACTaGTGGTTTGTCAGCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: KTLEPQMLTQIQADKMLSPTGTN*WFVSRV Trigger: AACCCTGCTGACAAACCAGCAGTTGGTACCAGTGGG...TGAAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR GCA 90 bp | GGTAATGTTCACTTTGGAACAGTGACAGAGAATCAACCACAAAGTCAAATGACAGGCTCCCTGGCCTCTTaGATGTCTGATCCTGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: GNVHFGTVTENQPQSQMTGSLAS*MSDPEE Trigger: TTCTTCAGGATCAGACATGCAAGAGGCCAGGGAGCC...TGTCATTTGACTTTGTGGTTGATTCTCTGTCACTGTTCCAAAGTGAACATTACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | AGTAAAGAGAAAGGAGCTGCACTGGCTACTACCAACATCTTCTTAGCATGGCTAACCATGGCTATGTCTTaGTCTTGGGTTTCCATGATT | + |
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Preference number: 4 (lower is better) Translates to: SKEKGAALATTNIFLAWLTMAMS*SWVSMI Trigger: AATCATGGAAACCCAAGATCAAGACATAGCCATGGT...TAGCCATGCTAAGAAGATGTTGGTAGTAGCCAGTGCAGCTCCTTTCTCTTTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR GCA 90 bp | ATGAGAAATGAAAGCATGCACAGAAAAATGGGTCCCATCTTTATTCACTTCTTCTTATGTACCCTCTGGTaGTTGCCACTTTTCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: MRNESMHRKMGPIFIHFFLCTLW*LPLFFM Trigger: CATGAAGAAAAGTGGCAAGCACCAGAGGGTACATAA...GAAGAAGTGAATAAAGATGGGACCCATTTTTCTGTGCATGCTTTCATTTCTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR TCA 90 bp | GGTAATGTTCACTTTGGAACAGTGACAGAGAATCAACCACAAAGTCAAATGACATTTCATTCAGACTTCTaGAAGAGGCATTTACATCCT | + |
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Preference number: 4 (lower is better) Translates to: GNVHFGTVTENQPQSQMTFHSDF*KRHLHP Trigger: AGGATGTAAATGCCTCTTTCAGAAGTCTGAATGAAA...TGTCATTTGACTTTGTGGTTGATTCTCTGTCACTGTTCCAAAGTGAACATTACC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR GCA 90 bp | ATGAGAAATGAAAGCATGCACAGAAAAATGGGTCCCATCTTTATTCACTTCTTCGCTGAGCTTTCAAAATaGTCTGGAGGTTTTCATTCA | + |
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Preference number: 4 (lower is better) Translates to: MRNESMHRKMGPIFIHFFAELSK*SGGFHS Trigger: TGAATGAAAACCTCCAGAGCATTTTGAAAGCTCAGC...GAAGAAGTGAATAAAGATGGGACCCATTTTTCTGTGCATGCTTTCATTTCTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR GCA 90 bp | ATGAGAAATGAAAGCATGCACAGAAAAATGGGTCCCATCTTTATTCACTTCTTCATGATTACTCTGTTCTaGACCTTGGAGATTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: MRNESMHRKMGPIFIHFFMITLF*TLEISF Trigger: GAAGGAAATCTCCAAGGTGCAGAACAGAGTAATCAT...GAAGAAGTGAATAAAGATGGGACCCATTTTTCTGTGCATGCTTTCATTTCTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | ATGAGTCTGGGTGTCTTTGGGAAATGCCACAGCCCCACAACTAGCATAGAGTCAATTCTTCTTGGTCCCTaGTTCTGTCCATCTCAACCA | + |
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Preference number: 5 (lower is better) Translates to: MSLGVFGKCHSPTTSIESILLGP*FCPSQP Trigger: TGGTTGAGATGGACAGAACAAGGGACCAAGAAGAAT...TGACTCTATGCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACCCAGACTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | GTAAAGACCCCTCCAAAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGAACCATGGCTATGTCTaGATCTTGGGTTTCCATGAT | + |
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Preference number: 5 (lower is better) Translates to: VKTPPKHWSHKCLHRYRLNHGYV*ILGFHD Trigger: ATCATGGAAACCCAAGATCAAGACATAGCCATGGTT...CAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTTTGGAGGGGTCTTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | AGTAAAGAGAAAGGAGCTGCACTGGCTACTACCAACATCTTCTTAGCATGGCTAACTTCATCTGAGTTCTaGAAGTCATCTGATGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SKEKGAALATTNIFLAWLTSSEF*KSSDGR Trigger: CCTCCCATCAGATGACTTCAAGAACTCAGATGAAGT...TAGCCATGCTAAGAAGATGTTGGTAGTAGCCAGTGCAGCTCCTTTCTCTTTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | AACATCTTCTTAGCATGGCTAACGCTTCCTTCCCTGTGTATCCTATGTGTGATCGGCTATGTCTTGATCTaGGGTTTCCATGATTACTCT | + |
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Preference number: 5 (lower is better) Translates to: NIFLAWLTLPSLCILCVIGYVLI*GFHDYS Trigger: AGAGTAATCATGGAAACCCAAGATCAAGACATAGCC...GATCACACATAGGATACACAGGGAAGGAAGCGTTAGCCATGCTAAGAAGATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | GGTAATGTTCACTTTGGAACAGTGACAGAGAATCAACCACAAAGTCAAATGACAGTACCATCATCACCTTaGAAATCCTGCATCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: GNVHFGTVTENQPQSQMTVPSSP*KSCIFF Trigger: GAAGAAGATGCAGGATTTCAAAGGTGATGATGGTAC...TGTCATTTGACTTTGTGGTTGATTCTCTGTCACTGTTCCAAAGTGAACATTACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | GGTAATGTTCACTTTGGAACAGTGACAGAGAATCAACCACAAAGTCAAATGACAACTGAAGTATTCTTCTaGGTCCCTTGTTCTGTCCAT | + |
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Preference number: 5 (lower is better) Translates to: GNVHFGTVTENQPQSQMTTEVFF*VPCSVH Trigger: ATGGACAGAACAAGGGACCAAGAAGAATACTTCAGT...TGTCATTTGACTTTGTGGTTGATTCTCTGTCACTGTTCCAAAGTGAACATTACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | GGTAATGTTCACTTTGGAACAGTGACAGAGAATCAACCACAAAGTCAAATGACAATATCTTTAGCGTTTTaGAGCTTGGTTTCATGGTCC | + |
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Preference number: 5 (lower is better) Translates to: GNVHFGTVTENQPQSQMTISLAF*SLVSWS Trigger: GGACCATGAAACCAAGCTCAAAAACGCTAAAGATAT...TGTCATTTGACTTTGTGGTTGATTCTCTGTCACTGTTCCAAAGTGAACATTACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS-3UTR CAA 90 bp | GGTAATGTTCACTTTGGAACAGTGACAGAGAATCAACCACAAAGTCAAATGACACGTTTACTCAAGTCGTaGGCTTTCTTCAAAAATGTG | + |
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Preference number: 5 (lower is better) Translates to: GNVHFGTVTENQPQSQMTRLLKS*AFFKNV Trigger: CACATTTTTGAAGAAAGCCAACGACTTGAGTAAACG...TGTCATTTGACTTTGTGGTTGATTCTCTGTCACTGTTCCAAAGTGAACATTACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114518.9 |
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| CDS CAA 72 bp | CAGGGACTGAAGGTATGTTTCAACCATGGCTATGTCTaGATCTTGGGTTTCCATGATTACTCTGTTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: QGLKVCFNHGYV*ILGFHDYSVLH Trigger: GTGCAGAACAGAGTAATCATGGAAACCCAAGATCAAGACATAGCCATGGTTGAAACATACCTTCAGTCCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097221.4 ENSMUST00000114518.9 |
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| CDS CAA 90 bp | GATCAGGGACTGAAGGTATGTTTCAACCATGGCTATGTCTTGATCTaGGGTTTCCATGATTACTCTGTTCTGCACCTTGGAGATTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: DQGLKVCFNHGYVLI*GFHDYSVLHLGDFL Trigger: AAGGAAATCTCCAAGGTGCAGAACAGAGTAATCATGGAAACCCAAGATCAAGACATAGCCATGGTTGAAACATACCTTCAGTCCCTGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097221.4 ENSMUST00000114518.9 |
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| CDS CAA 72 bp | CTGAAGGTATGTTTCAACCATGGCTATGTCTTGATCTaGGGTTTCCATGATTACTCTGTTCTGCACCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: LKVCFNHGYVLI*GFHDYSVLHLG Trigger: TCCAAGGTGCAGAACAGAGTAATCATGGAAACCCAAGATCAAGACATAGCCATGGTTGAAACATACCTTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097221.4 ENSMUST00000114518.9 |
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| CDS TCA 72 bp | TTTCAACCATGGCTATGTCTTGATCTTGGGTTTCCATaGTTACTCTGTTCTGCACCTTGGAGATTTCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: FQPWLCLDLGFP*LLCSAPWRFPS Trigger: AGAAGGAAATCTCCAAGGTGCAGAACAGAGTAATCATGGAAACCCAAGATCAAGACATAGCCATGGTTGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097221.4 ENSMUST00000114518.9 |
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