Pregenerated sensors for XLR5A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058328Ensembl transcript IDs: ENSMUST00000078574.12, ENSMUST00000114520.2, ENSMUST00000114521.8, ENSMUST00000179600.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATaGTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAAT | + |
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Preference number: 1 (lower is better) Translates to: KHWSHKCLHRYRLIK*FHPKVTSVEDSFEN Trigger: ATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR TCA 90 bp | GCCACAGCCCCACAACTAGCACAGAGTCAACACATTAGGAATGGCTCTGTCGTGCACTACTGGGCAGAATaGATCTCCCTTGCTGTCATG | + |
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Preference number: 2 (lower is better) Translates to: ATAPQLAQSQHIRNGSVVHYWAE*ISLAVM Trigger: CATGACAGCAAGGGAGATTCATTCTGCCCAGTAGTG...CACGACAGAGCCATTCCTAATGTGTTGACTCTGTGCTAGTTGTGGGGCTGTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR GCA 90 bp | CCAAAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATGCTTTGGTGTCTTTGGGAAATaGCACAGCCCCACAACTAGC | + |
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Preference number: 2 (lower is better) Translates to: PKHWSHKCLHRYRLIKCFGVFGK*HSPTTS Trigger: GCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACC...AAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR GCA 90 bp | AAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGAGTCTGGTGTCTTTGGGAAATaGCACAGCCCCACAACTAGC | + |
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Preference number: 2 (lower is better) Translates to: KCFHPKVTSVEDSFENESGVFGK*HSPTTS Trigger: GCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACC...AGACTCATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR TCA 90 bp | AAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGAGTCTCACTACTGGGCAGAATaGATCTCCCTTGCTGTCATG | + |
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Preference number: 2 (lower is better) Translates to: KCFHPKVTSVEDSFENESHYWAE*ISLAVM Trigger: CATGACAGCAAGGGAGATTCATTCTGCCCAGTAGTG...AGACTCATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR TCA 90 bp | CCAAAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATGCTTTGTCTCTGTGACCTCATaGGAAATGAAAGCATGCACA | + |
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Preference number: 2 (lower is better) Translates to: PKHWSHKCLHRYRLIKCFVSVTS*EMKACT Trigger: TGTGCATGCTTTCATTTCTCATGAGGTCACAGAGAC...AAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR TCA 90 bp | CCAAAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATGCTTTTTCACTTTGGAACAGTaGCAGAGAATCAACCACAAA | + |
|
Preference number: 2 (lower is better) Translates to: PKHWSHKCLHRYRLIKCFFTLEQ*QRINHK Trigger: TTTGTGGTTGATTCTCTGTCACTGTTCCAAAGTGAA...AAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR TCA 90 bp | CTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGTCTCTGTGACCTCATaGGAAATGAAAGCATGCACA | + |
|
Preference number: 2 (lower is better) Translates to: LIKCFHPKVTSVEDSFENVSVTS*EMKACT Trigger: TGTGCATGCTTTCATTTCTCATGAGGTCACAGAGAC...ATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR CCA 72 bp | GGAGCTGCACTGGCTACTACCAACATCTTCTTAGCATaGCTAACGCTTCCTTCCCTGTGTATCCTATGTGTG | + |
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Preference number: 3 (lower is better) Translates to: GAALATTNIFLA*LTLPSLCILCV Trigger: CACACATAGGATACACAGGGAAGGAAGCGTTAGCCATGCTAAGAAGATGTTGGTAGTAGCCAGTGCAGCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR GCA 72 bp | ACAGCTTTGAAAATGAGTCTGGGTGTCTTTGGGAAATaGCACAGCCCCACAACTAGCACAGAGTCAACACAT | + |
|
Preference number: 3 (lower is better) Translates to: TALKMSLGVFGK*HSPTTSTESTH Trigger: ATGTGTTGACTCTGTGCTAGTTGTGGGGCTGTGGCATTTCCCAAAGACACCCAGACTCATTTTCAAAGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR TCA 72 bp | TTGCTTCCAAAATATAATTGCCACTACTGGGCAGAATaGATCTCCCTTGCTGTCATGGGCCTGGATGATCCA | + |
|
Preference number: 3 (lower is better) Translates to: LLPKYNCHYWAE*ISLAVMGLDDP Trigger: TGGATCATCCAGGCCCATGACAGCAAGGGAGATTCATTCTGCCCAGTAGTGGCAATTATATTTTGGAAGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR CAA 90 bp | AAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGAGTCTCAGAATGAATCTCCCTaGCTGTCATGGGCCTGGATG | + |
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Preference number: 3 (lower is better) Translates to: KCFHPKVTSVEDSFENESQNESP*LSWAWM Trigger: CATCCAGGCCCATGACAGCAAGGGAGATTCATTCTG...AGACTCATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR CAA 90 bp | CCAAAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATGCTTTGGGTTGATTTTCCCATaGCAATGGAACGGTCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: PKHWSHKCLHRYRLIKCFGLIFP*QWNGLC Trigger: ACAGAGACCGTTCCATTGCAATGGGAAAATCAACCC...AAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR CAA 90 bp | CTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATCAGAATGAATCTCCCTaGCTGTCATGGGCCTGGATG | + |
|
Preference number: 3 (lower is better) Translates to: LIKCFHPKVTSVEDSFENQNESP*LSWAWM Trigger: CATCCAGGCCCATGACAGCAAGGGAGATTCATTCTG...ATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAGGGTTGATTTTCCCATaGCAATGGAACGGTCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: RLIKCFHPKVTSVEDSFEGLIFP*QWNGLC Trigger: ACAGAGACCGTTCCATTGCAATGGGAAAATCAACCC...TTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| 3UTR-3UTR CAA 90 bp | CTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGGGTTGATTTTCCCATaGCAATGGAACGGTCTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: LIKCFHPKVTSVEDSFENGLIFP*QWNGLC Trigger: ACAGAGACCGTTCCATTGCAATGGGAAAATCAACCC...ATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR TCA 90 bp | GACATTTGCTTCCAAAATATAATTGCCACTACTGGGCAGAATGAATCTCCCTTGAGTCGTTGGCTTTACTaGAGTATTCTTCTTGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: DICFQNIIATTGQNESPLSRWLY*SILLGP Trigger: GGGACCAAGAAGAATACTTCAGTAAAGCCAACGACT...CAAGGGAGATTCATTCTGCCCAGTAGTGGCAATTATATTTTGGAAGCAAATGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114521.8 |
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| CDS-3UTR CCA 90 bp | AGGCTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAATGCCACTTTTCTTCATaGCCTTTTGTTCCTTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: RLIKCFHPKVTSVEDSFECHFSS*PFVPCL Trigger: CAAACAAGGAACAAAAGGCCATGAAGAAAAGTGGCA...TTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR GCA 90 bp | GACATTTGCTTCCAAAATATAATTGCCACTACTGGGCAGAATGAATCTCCCTTGACATCCTCTTCAAACTaGTTCTTCTTTTCCATAAGA | + |
|
Preference number: 4 (lower is better) Translates to: DICFQNIIATTGQNESPLTSSSN*FFFSIR Trigger: TCTTATGGAAAAGAAGAAGCAGTTTGAAGAGGATGT...CAAGGGAGATTCATTCTGCCCAGTAGTGGCAATTATATTTTGGAAGCAAATGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR CCA 90 bp | CTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATTGCCACTTTTCTTCATaGCCTTTTGTTCCTTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: LIKCFHPKVTSVEDSFENCHFSS*PFVPCL Trigger: CAAACAAGGAACAAAAGGCCATGAAGAAAAGTGGCA...ATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR GCA 90 bp | CTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATACATCCTCTTCAAACTaGTTCTTCTTTTCCATAAGA | + |
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Preference number: 4 (lower is better) Translates to: LIKCFHPKVTSVEDSFENTSSSN*FFFSIR Trigger: TCTTATGGAAAAGAAGAAGCAGTTTGAAGAGGATGT...ATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CCA 90 bp | TCTGAGTTCTTGAAGTCATCTGATGGGAGGGTCTTATGTACCCTCTaGTGCTTGCCACTTTTCTTCATGGCCTTTTGTTCCTTGTTTGAC | + |
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Preference number: 5 (lower is better) Translates to: SEFLKSSDGRVLCTL*CLPLFFMAFCSLFD Trigger: GTCAAACAAGGAACAAAAGGCCATGAAGAAAAGTGGCAAGCACCAGAGGGTACATAAGACCCTCCCATCAGATGACTTCAAGAACTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CCA 90 bp | TATTCTTCTTGGTCCCTTGTTCTGTCCATCTCAACCAGCCAATTGTaGTACACCGACCCAAATCTTTCACAGTACAGAGACTTAAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: YSSWSLVLSISTSQL*YTDPNLSQYRDLSS Trigger: GGAGCTTAAGTCTCTGTACTGTGAAAGATTTGGGTCGGTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAAGAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CCA 90 bp | AAAATCTTCATTTGCTGCTGGGTTATAAAACTGAAGTATTCTTCTTaGTCCCTTGTTCTGTCCATCTCAACCAGCCAATTGTGGTACACC | + |
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Preference number: 5 (lower is better) Translates to: KIFICCWVIKLKYSS*SLVLSISTSQLWYT Trigger: GGTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAAGAATACTTCAGTTTTATAACCCAGCAGCAAATGAAGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000179600.8 |
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| CDS CCA 90 bp | GTTTCATGGTCCTCTATAGCCGTCTGTAAAATCTTCATTTGCTGCTaGGTTATAAAACTGAAGTATTCTTCTTGGTCCCTTGTTCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: VSWSSIAVCKIFICC*VIKLKYSSWSLVLS Trigger: GGACAGAACAAGGGACCAAGAAGAATACTTCAGTTTTATAACCCAGCAGCAAATGAAGATTTTACAGACGGCTATAGAGGACCATGAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000179600.8 |
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| CDS-3UTR CAA 90 bp | CCAAAACACTGGAGCCACAAATGCTTACACAGATACAGGCTGATAAAATGCTTTAACCATGGATATGTCTaGATCTTGGGTTTCCATGAT | + |
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Preference number: 5 (lower is better) Translates to: PKHWSHKCLHRYRLIKCFNHGYV*ILGFHD Trigger: ATCATGGAAACCCAAGATCAAGACATATCCATGGTT...AAAGCATTTTATCAGCCTGTATCTGTGTAAGCATTTGTGGCTCCAGTGTTTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR CAA 90 bp | AGGCTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAGGATATGTCTTGATCTaGGGTTTCCATGATTACTCT | + |
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Preference number: 5 (lower is better) Translates to: RLIKCFHPKVTSVEDSFEGYVLI*GFHDYS Trigger: AGAGTAATCATGGAAACCCAAGATCAAGACATATCC...TTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR CAA 90 bp | AAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGAGTCTGGATATGTCTTGATCTaGGGTTTCCATGATTACTCT | + |
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Preference number: 5 (lower is better) Translates to: KCFHPKVTSVEDSFENESGYVLI*GFHDYS Trigger: AGAGTAATCATGGAAACCCAAGATCAAGACATATCC...AGACTCATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR CAA 90 bp | AAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATGAGTCTAACCATGGATATGTCTaGATCTTGGGTTTCCATGAT | + |
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Preference number: 5 (lower is better) Translates to: KCFHPKVTSVEDSFENESNHGYV*ILGFHD Trigger: ATCATGGAAACCCAAGATCAAGACATATCCATGGTT...AGACTCATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS-3UTR CAA 90 bp | CTGATAAAATGCTTTCATCCAAAGGTAACCAGTGTTGAAGACAGCTTTGAAAATAACCATGGATATGTCTaGATCTTGGGTTTCCATGAT | + |
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Preference number: 5 (lower is better) Translates to: LIKCFHPKVTSVEDSFENNHGYV*ILGFHD Trigger: ATCATGGAAACCCAAGATCAAGACATATCCATGGTT...ATTTTCAAAGCTGTCTTCAACACTGGTTACCTTTGGATGAAAGCATTTTATCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CCA 72 bp | GGCTCCCTGGCCTCTTGCATGTCTGATCCTGAAGAATaGCTGCCCATCCCACTGGTACCAACTGCTGGTTTG | + |
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Preference number: 6 (lower is better) Translates to: GSLASCMSDPEE*LPIPLVPTAGL Trigger: CAAACCAGCAGTTGGTACCAGTGGGATGGGCAGCCATTCTTCAGGATCAGACATGCAAGAGGCCAGGGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CAA 72 bp | GAATGGCTGCCCATCCCACTGGTACCAACTGCTGGTTaGTCAGCAGGGTTAACTTCATCTGAGTTCTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: EWLPIPLVPTAG*SAGLTSSEFLK Trigger: CTTCAAGAACTCAGATGAAGTTAACCCTGCTGACAAACCAGCAGTTGGTACCAGTGGGATGGGCAGCCATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CCA 72 bp | TGGTCCCTTGTTCTGTCCATCTCAACCAGCCAATTGTaGTACACCGACCCAAATCTTTCACAGTACAGAGAC | + |
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Preference number: 6 (lower is better) Translates to: WSLVLSISTSQL*YTDPNLSQYRD Trigger: GTCTCTGTACTGTGAAAGATTTGGGTCGGTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CAA 90 bp | GTACCAACTGCTGGTTTGTCAGCAGGGTTAACTTCATCTGAGTTCTaGAAGTCATCTGATGGGAGGGTCTTATGTACCCTCTGGTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VPTAGLSAGLTSSEF*KSSDGRVLCTLWCL Trigger: CAAGCACCAGAGGGTACATAAGACCCTCCCATCAGATGACTTCAAGAACTCAGATGAAGTTAACCCTGCTGACAAACCAGCAGTTGGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CAA 72 bp | GCTGGTTTGTCAGCAGGGTTAACTTCATCTGAGTTCTaGAAGTCATCTGATGGGAGGGTCTTATGTACCCTC | + |
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Preference number: 6 (lower is better) Translates to: AGLSAGLTSSEF*KSSDGRVLCTL Trigger: GAGGGTACATAAGACCCTCCCATCAGATGACTTCAAGAACTCAGATGAAGTTAACCCTGCTGACAAACCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CAA 72 bp | TCTTGGTCCCTTGTTCTGTCCATCTCAACCAGCCAATaGTGGTACACCGACCCAAATCTTTCACAGTACAGA | + |
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Preference number: 6 (lower is better) Translates to: SWSLVLSISTSQ*WYTDPNLSQYR Trigger: TCTGTACTGTGAAAGATTTGGGTCGGTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CAA 90 bp | AAGTATTCTTCTTGGTCCCTTGTTCTGTCCATCTCAACCAGCCAATaGTGGTACACCGACCCAAATCTTTCACAGTACAGAGACTTAAGC | + |
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Preference number: 6 (lower is better) Translates to: KYSSWSLVLSISTSQ*WYTDPNLSQYRDLS Trigger: GCTTAAGTCTCTGTACTGTGAAAGATTTGGGTCGGTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAAGAATACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CCA 72 bp | TTACTCAAGTCGTTGGCTTTACTGAAGTATTCTTCTTaGTCCCTTGTTCTGTCCATCTCAACCAGCCAATTG | + |
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Preference number: 6 (lower is better) Translates to: LLKSLALLKYSS*SLVLSISTSQL Trigger: CAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAAGAATACTTCAGTAAAGCCAACGACTTGAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114521.8 |
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| CDS CAA 72 bp | CAGGGACTGAAGGTATGTTTCAACCATGGATATGTCTaGATCTTGGGTTTCCATGATTACTCTGTTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: QGLKVCFNHGYV*ILGFHDYSVLH Trigger: GTGCAGAACAGAGTAATCATGGAAACCCAAGATCAAGACATATCCATGGTTGAAACATACCTTCAGTCCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS CAA 90 bp | TTTTTGACGTTTACTCAAGTCGTTGGCTTTACTGAAGTATTCTTCTaGGTCCCTTGTTCTGTCCATCTCAACCAGCCAATTGTGGTACAC | + |
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Preference number: 6 (lower is better) Translates to: FLTFTQVVGFTEVFF*VPCSVHLNQPIVVH Trigger: GTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAAGAATACTTCAGTAAAGCCAACGACTTGAGTAAACGTCAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114521.8 |
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| CDS CCA 72 bp | ATTTGCTGCTGGGTTATAAAACTGAAGTATTCTTCTTaGTCCCTTGTTCTGTCCATCTCAACCAGCCAATTG | + |
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Preference number: 6 (lower is better) Translates to: ICCWVIKLKYSS*SLVLSISTSQL Trigger: CAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAAGAATACTTCAGTTTTATAACCCAGCAGCAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000179600.8 |
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| CDS CAA 72 bp | CTGAAGGTATGTTTCAACCATGGATATGTCTTGATCTaGGGTTTCCATGATTACTCTGTTCTGCACCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: LKVCFNHGYVLI*GFHDYSVLHLG Trigger: TCCAAGGTGCAGAACAGAGTAATCATGGAAACCCAAGATCAAGACATATCCATGGTTGAAACATACCTTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS TCA 72 bp | CTTTCAAAATGCTCTGGAGGTTTTCATTCAGACTTCTaGAAGAGGCATTTACATCCTCTTCAAACTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LSKCSGGFHSDF*KRHLHPLQTAS Trigger: AGAAGCAGTTTGAAGAGGATGTAAATGCCTCTTTCAGAAGTCTGAATGAAAACCTCCAGAGCATTTTGAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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| CDS GCA 72 bp | AGACTTCTGAAAGAGGCATTTACATCCTCTTCAAACTaGTTCTTCTTTTCCATAAGAAGTCCTGTACCATCA | + |
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Preference number: 6 (lower is better) Translates to: RLLKEAFTSSSN*FFFSIRSPVPS Trigger: TGATGGTACAGGACTTCTTATGGAAAAGAAGAAGCAGTTTGAAGAGGATGTAAATGCCTCTTTCAGAAGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000078574.12 ENSMUST00000114520.2 ENSMUST00000114521.8 ENSMUST00000179600.8 |
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