Pregenerated sensors for XLR4C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031362Ensembl transcript IDs: ENSMUST00000068551.9, ENSMUST00000114530.8, ENSMUST00000114531.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAACGGGACACAATGAGACAAGTGGCCTGGACTACACTGGCCCCATaGAGGGACACAGGTGACAGCACACCTCCACATGGAATGGGGCCA | + |
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Preference number: 1 (lower is better) Translates to: QRDTMRQVAWTTLAP*RDTGDSTPPHGMGP Trigger: TGGCCCCATTCCATGTGGAGGTGTGCTGTCACCTGTGTCCCTGCATGGGGCCAGTGTAGTCCAGGCCACTTGTCTCATTGTGTCCCGTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR CCA 90 bp | GTTTTCAATGCTTCTACACAACGGGACACAATGAGACAAGTGGCCTaGACTACACTGGCCCCATGCAGGGACACAGGTGACAGCACACCT | + |
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Preference number: 1 (lower is better) Translates to: VFNASTQRDTMRQVA*TTLAPCRDTGDSTP Trigger: AGGTGTGCTGTCACCTGTGTCCCTGCATGGGGCCAGTGTAGTCCAGGCCACTTGTCTCATTGTGTCCCGTTGTGTAGAAGCATTGAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR TCA 90 bp | AGCACACCTCCACATGGAATGGGGCCATGTCTGTCTGAGAAGGGGTaGAACGTCAGGGATGTCAGAAAGAGAATGCAATTAAATGACTCA | + |
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Preference number: 1 (lower is better) Translates to: STPPHGMGPCLSEKG*NVRDVRKRMQLNDS Trigger: TGAGTCATTTAATTGCATTCTCTTTCTGACATCCCTGACGTTTCACCCCTTCTCAGACAGACATGGCCCCATTCCATGTGGAGGTGTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR-3UTR CCA 90 bp | ACGGGACACAATGAGACAAGTGGCCTGGACTACACTGGCCCCATGCAGGGACACCAGCACACCTCCACATaGAATGGGGCCATGTCTGTC | + |
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Preference number: 2 (lower is better) Translates to: TGHNETSGLDYTGPMQGHQHTST*NGAMSV Trigger: GACAGACATGGCCCCATTCCATGTGGAGGTGTGCTG...GTGTCCCTGCATGGGGCCAGTGTAGTCCAGGCCACTTGTCTCATTGTGTCCCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR-3UTR CCA 90 bp | AAATGGGGGAGGCTGAACACAGCCTGTTTTCAATGCTTCTACACAACGGGACACATGAGACAAGTGGCCTaGACTACACTGGCCCCATGC | + |
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Preference number: 2 (lower is better) Translates to: KWGRLNTACFQCFYTTGHMRQVA*TTLAPC Trigger: GCATGGGGCCAGTGTAGTCCAGGCCACTTGTCTCAT...GTGTCCCGTTGTGTAGAAGCATTGAAAACAGGCTGTGTTCAGCCTCCCCCATTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR-3UTR TCA 90 bp | TTCAGTCTGGAGGAATGCAATTCCACTTGGAGAAAATGGGGGAGGCTGAACACAGAGAATGCAATTAAATaGCTCATGCCAACAAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: FSLEECNSTWRKWGRLNTENAIK*LMPTSL Trigger: CAGACTTGTTGGCATGAGTCATTTAATTGCATTCTC...TGTGTTCAGCCTCCCCCATTTTCTCCAAGTGGAATTGCATTCCTCCAGACTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR GCA 72 bp | ACAATGAGACAAGTGGCCTGGACTACACTGGCCCCATaGAGGGACACAGGTGACAGCACACCTCCACATGGA | + |
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Preference number: 3 (lower is better) Translates to: TMRQVAWTTLAP*RDTGDSTPPHG Trigger: TCCATGTGGAGGTGTGCTGTCACCTGTGTCCCTGCATGGGGCCAGTGTAGTCCAGGCCACTTGTCTCATTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR CCA 72 bp | GCAGGGACACAGGTGACAGCACACCTCCACATGGAATaGGGCCATGTCTGTCTGAGAAGGGGTGAAACGTCA | + |
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Preference number: 3 (lower is better) Translates to: AGTQVTAHLHME*GHVCLRRGETS Trigger: TGACGTTTCACCCCTTCTCAGACAGACATGGCCCCATTCCATGTGGAGGTGTGCTGTCACCTGTGTCCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR TCA 72 bp | AGCCTGTTTTCAATGCTTCTACACAACGGGACACAATaGGACAAGTGGCCTGGACTACACTGGCCCCATGCA | + |
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Preference number: 3 (lower is better) Translates to: SLFSMLLHNGTQ*DKWPGLHWPHA Trigger: TGCATGGGGCCAGTGTAGTCCAGGCCACTTGTCTCATTGTGTCCCGTTGTGTAGAAGCATTGAAAACAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR GCA 72 bp | ATCACAGCAGGGAAGCCCTCATTCAGTCTGGAGGAATaGAATTCCACTTGGAGAAAATGGGGGAGGCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: ITAGKPSFSLEE*NSTWRKWGRLN Trigger: GTTCAGCCTCCCCCATTTTCTCCAAGTGGAATTGCATTCCTCCAGACTGAATGAGGGCTTCCCTGCTGTGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| 3UTR TCA 72 bp | CCACATGGAATGGGGCCATGTCTGTCTGAGAAGGGGTaGAACGTCAGGGATGTCAGAAAGAGAATGCAATTA | + |
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Preference number: 3 (lower is better) Translates to: PHGMGPCLSEKG*NVRDVRKRMQL Trigger: TAATTGCATTCTCTTTCTGACATCCCTGACGTTTCACCCCTTCTCAGACAGACATGGCCCCATTCCATGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068551.9 |
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| CDS CAA 90 bp | TTCTGTTGCTCATCAAGTATATCAGAGAGTTTTCCAGCCTGTTTCTaGATTTGGTCTACATCTATATTCCACATCATAACCAAAGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: FCCSSSISESFPACF*IWSTSIFHIITKVK Trigger: TTTGACTTTGGTTATGATGTGGAATATAGATGTAGACCAAATCAAGAAACAGGCTGGAAAACTCTCTGATATACTTGATGAGCAACAGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068551.9 ENSMUST00000114530.8 ENSMUST00000114531.8 |
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