Pregenerated sensors for XLR4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079845Ensembl transcript IDs: ENSMUST00000078775.13, ENSMUST00000114534.2, ENSMUST00000139191.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTTCTGATGCCTCAGAGATGTGAACAAGGAATTGATAATCACTACAATAACAGTCATCAAGTCATTTCATaGTGGTTGAGCTTCTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: FLMPQRCEQGIDNHYNNSHQVIS*WLSFFL Trigger: AAGAAAGAAGCTCAACCACCATGAAATGACTTGATG...ACTGTTATTGTAGTGATTATCAATTCCTTGTTCACATCTCTGAGGCATCAGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR TCA 90 bp | TTTAGAAAATATCATCAAGTCATTTCATGGTGGTTGAGCTTCTTTCTTCCAGGTTTCATGAAGCTGCTGTaGATCGTCAGATGGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: FRKYHQVISWWLSFFLPGFMKLL*IVRWQS Trigger: GCTCTGCCATCTGACGATTCACAGCAGCTTCATGAA...ACCTGGAAGAAAGAAGCTCAACCACCATGAAATGACTTGATGATATTTTCTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR TCA 90 bp | CCTCAGAGATGTGAACAAGGAATTGATAATCACTACAATAACAGTGTCATGTCAGATAGAAGTGATGATTaGACACCATCCTTTGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: PQRCEQGIDNHYNNSVMSDRSDD*TPSFAS Trigger: GGAAGCAAAGGATGGTGTTCAATCATCACTTCTATC...TGACATGACACTGTTATTGTAGTGATTATCAATTCCTTGTTCACATCTCTGAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR TCA 90 bp | TTTAGAAAATATCATCAAGTCATTTCATGGTGGTTGAGCTTCTTTCTTCCAGGTTTCCAGCCTGTTTCTTaGTTTGGTCTACATCTATAT | + |
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Preference number: 4 (lower is better) Translates to: FRKYHQVISWWLSFFLPGFQPVS*FGLHLY Trigger: ATATAGATGTAGACCAAATCAAGAAACAGGCTGGAA...ACCTGGAAGAAAGAAGCTCAACCACCATGAAATGACTTGATGATATTTTCTAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR CAA 90 bp | TGCCTCAGAGATGTGAACAAGGAATTGATAATCACTACAATAACAGTGTCATGTGAGCAGGAGTCACCTTaGGTTGCTTGGGAGGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: CLRDVNKELIITTITVSCEQESP*VAWEVC Trigger: GCAGACCTCCCAAGCAACCAAAGGTGACTCCTGCTC...ACATGACACTGTTATTGTAGTGATTATCAATTCCTTGTTCACATCTCTGAGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR CAA 90 bp | CAGTGTCATGTCACCATAGATTTAGAAAATATCATCAAGTCATTTCATGGTGGTTACTGGGCCCTGGCTTaGGTCCACCTGTTCCATGGG | + |
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Preference number: 5 (lower is better) Translates to: QCHVTIDLENIIKSFHGGYWALA*VHLFHG Trigger: CCCATGGAACAGGTGGACCAAAGCCAGGGCCCAGTA...ACCACCATGAAATGACTTGATGATATTTTCTAAATCTATGGTGACATGACACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR CAA 90 bp | TTTCTGATGCCTCAGAGATGTGAACAAGGAATTGATAATCACTACAATAACAGTGTCACCTTTGGTTGCTaGGGAGGTCTGCCCTTGATT | + |
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Preference number: 5 (lower is better) Translates to: FLMPQRCEQGIDNHYNNSVTFGC*GGLPLI Trigger: AATCAAGGGCAGACCTCCCAAGCAACCAAAGGTGAC...ACTGTTATTGTAGTGATTATCAATTCCTTGTTCACATCTCTGAGGCATCAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR CAA 90 bp | CCTCAGAGATGTGAACAAGGAATTGATAATCACTACAATAACAGTGTCATGTCAATTGAACACCATCCTTaGCTTCCTGCTTGTTTACGT | + |
|
Preference number: 5 (lower is better) Translates to: PQRCEQGIDNHYNNSVMSIEHHP*LPACLR Trigger: ACGTAAACAAGCAGGAAGCAAAGGATGGTGTTCAAT...TGACATGACACTGTTATTGTAGTGATTATCAATTCCTTGTTCACATCTCTGAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR CAA 90 bp | TTTAGAAAATATCATCAAGTCATTTCATGGTGGTTGAGCTTCTTTCTTCCAGGTGTTTCAAGGGCCAGATaGTTTCCTGGGTTATTTTCA | + |
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Preference number: 5 (lower is better) Translates to: FRKYHQVISWWLSFFLPGVSRAR*FPGLFS Trigger: TGAAAATAACCCAGGAAACAATCTGGCCCTTGAAAC...ACCTGGAAGAAAGAAGCTCAACCACCATGAAATGACTTGATGATATTTTCTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS-3UTR CAA 90 bp | CAGTGTCATGTCACCATAGATTTAGAAAATATCATCAAGTCATTTCATGGTGGTTTTCCAGCCTGTTTCTaGATTTGGTCTACATCTATA | + |
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Preference number: 5 (lower is better) Translates to: QCHVTIDLENIIKSFHGGFPACF*IWSTSI Trigger: TATAGATGTAGACCAAATCAAGAAACAGGCTGGAAA...ACCACCATGAAATGACTTGATGATATTTTCTAAATCTATGGTGACATGACACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078775.13 |
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| CDS TCA 72 bp | CAGATTGTTTCCTGGGTTATTTTCATGAAGCTGCTGTaGATCGTCAGATGGCAGAGCAGGAGTCACCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: QIVSWVIFMKLL*IVRWQSRSHLW Trigger: CCAAAGGTGACTCCTGCTCTGCCATCTGACGATTCACAGCAGCTTCATGAAAATAACCCAGGAAACAATCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078775.13 ENSMUST00000114534.2 ENSMUST00000139191.8 |
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| CDS CAA 90 bp | ACTTTCTCTTCCTTTCATTTAGAGTTTTCTTACTGGGCCCTGGCTTaGGTCCACCTGTTCCATGGGAAGAACTGCTTTCCCCACAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: TFSSFHLEFSYWALA*VHLFHGKNCFPHKF Trigger: AAACTTGTGGGGAAAGCAGTTCTTCCCATGGAACAGGTGGACCAAAGCCAGGGCCCAGTAAGAAAACTCTAAATGAAAGGAAGAGAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078775.13 ENSMUST00000114534.2 ENSMUST00000139191.8 |
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