Pregenerated sensors for XLR3C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058147

Ensembl transcript IDs: ENSMUST00000080839.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	ACACTGCCTTTGGAGGCTGAAGGTCAGTTTCATAGGCTCCATCACTaGACACATTTCAGAGCAGAATGTCAAAGAAAGCCTGTATCTTCT	+
Preference number: 1 (lower is better) Translates to: TLPLEAEGQFHRLHH*THFRAECQRKPVSS Trigger: AGAAGATACAGGCTTTCTTTGACATTCTGCTCTGAAATGTGTTCAGTGATGGAGCCTATGAAACTGACCTTCAGCCTCCAAAGGCAGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR TCA 90 bp	GATGGCGAATTAAGCTGTATTCATGTTCAGAATCACCTCTTAGTGTaGCAGATTCATTTAATTGAAAGACCTTGTAAATGTTGTCTGCAA	+
Preference number: 1 (lower is better) Translates to: DGELSCIHVQNHLLV*QIHLIERPCKCCLQ Trigger: TTGCAGACAACATTTACAAGGTCTTTCAATTAAATGAATCTGTCACACTAAGAGGTGATTCTGAACATGAATACAGCTTAATTCGCCATC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR GCA 90 bp	CACGAGACCTCATATATAATATCCCTGATGATCCCATACTACATGTaGGATAAATTCCACAAACAAAACATTCTAAGTTACTCTTATCCA	+
Preference number: 1 (lower is better) Translates to: HETSYIISLMIPYYM*DKFHKQNILSYSYP Trigger: TGGATAAGAGTAACTTAGAATGTTTTGTTTGTGGAATTTATCGCACATGTAGTATGGGATCATCAGGGATATTATATATGAGGTCTCGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR-3UTR TCA 90 bp	TGTATCTTCTCTAATTATTTATCTGGACACGACAACAATAGCCCACTTGTGTGCCCTGCCATCTCTACCTaGGGGCTGGAGTTCCCTACA	+
Preference number: 2 (lower is better) Translates to: CIFSNYLSGHDNNSPLVCPAIST*GLEFPT Trigger: TGTAGGGAACTCCAGCCCTCAGGTAGAGATGGCAGG...GCACACAAGTGGGCTATTGTTGTCGTGTCCAGATAAATAATTAGAGAAGATACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR-3UTR GCA 90 bp	GACACGAGCTTTAACTGTACACGAGACCTCATATATAATATCCCTGATGATCCCCTTTTAAGAGCACACTaGCTTTGGAGGCTGAAGGTC	+
Preference number: 2 (lower is better) Translates to: DTSFNCTRDLIYNIPDDPLLRAH*LWRLKV Trigger: GACCTTCAGCCTCCAAAGGCAGTGTGCTCTTAAAAG...GGGATCATCAGGGATATTATATATGAGGTCTCGTGTACAGTTAAAGCTCGTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR CCA 72 bp	GCTACCAAGGAAAGCCTGCCATCTCTACCTGAGGGCTaGAGTTCCCTACAGACATATTTGCACTGCTGTCAC	+
Preference number: 3 (lower is better) Translates to: ATKESLPSLPEG*SSLQTYLHCCH Trigger: GTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCAGGTAGAGATGGCAGGCTTTCCTTGGTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR TCA 72 bp	TTGCGATGCTACCAAGGAAAGCCTGCCATCTCTACCTaGGGGCTGGAGTTCCCTACAGACATATTTGCACTG	+
Preference number: 3 (lower is better) Translates to: LRCYQGKPAIST*GLEFPTDIFAL Trigger: CAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCAGGTAGAGATGGCAGGCTTTCCTTGGTAGCATCGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR GCA 72 bp	CTCTACCTGAGGGCTGGAGTTCCCTACAGACATATTTaGACTGCTGTCACACAAATCCCAGGGTTTATTTGG	+
Preference number: 3 (lower is better) Translates to: LYLRAGVPYRHI*TAVTQIPGFIW Trigger: CCAAATAAACCCTGGGATTTGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCAGGTAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR GCA 72 bp	CCTGAGGGCTGGAGTTCCCTACAGACATATTTGCACTaGTGTCACACAAATCCCAGGGTTTATTTGGATTTA	+
Preference number: 3 (lower is better) Translates to: PEGWSSLQTYLH*CHTNPRVYLDL Trigger: TAAATCCAAATAAACCCTGGGATTTGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR TCA 72 bp	TTGGAGGCTGAAGGTCAGTTTCATAGGCTCCATCACTaGACACATTTCAGAGCAGAATGTCAAAGAAAGCCT	+
Preference number: 3 (lower is better) Translates to: LEAEGQFHRLHH*THFRAECQRKP Trigger: AGGCTTTCTTTGACATTCTGCTCTGAAATGTGTTCAGTGATGGAGCCTATGAAACTGACCTTCAGCCTCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR-3UTR CAA 90 bp	GACACGAGCTTTAACTGTACACGAGACCTCATATATAATATCCCTGATGATCCCAATCCCAGGGTTTATTaGGATTTAACAGAACGGGGC	+
Preference number: 3 (lower is better) Translates to: DTSFNCTRDLIYNIPDDPNPRVY*DLTERG Trigger: GCCCCGTTCTGTTAAATCCAAATAAACCCTGGGATT...GGGATCATCAGGGATATTATATATGAGGTCTCGTGTACAGTTAAAGCTCGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR TCA 72 bp	GACCTTGTAAATGTTGTCTGCAAATGGCATTTCCACTaGTTCAAGCCACATTACTCACATCTTTCTTACTCG	+
Preference number: 3 (lower is better) Translates to: DLVNVVCKWHFH*FKPHYSHLSYS Trigger: CGAGTAAGAAAGATGTGAGTAATGTGGCTTGAATCAGTGGAAATGCCATTTGCAGACAACATTTACAAGGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR GCA 90 bp	AATTGCGATGCTACCAAGGAAAGCCTGCCATCTCTACCTGAGGGCTGGAGTTCCGGATCCATCCTTGAGTaGCTGCCAGCAGTGTCAGTG	+
Preference number: 4 (lower is better) Translates to: NCDATKESLPSLPEGWSSGSILE*LPAVSV Trigger: CACTGACACTGCTGGCAGGCACTCAAGGATGGATCC...GGAACTCCAGCCCTCAGGTAGAGATGGCAGGCTTTCCTTGGTAGCATCGCAATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR GCA 90 bp	AAATCCCAGGGTTTATTTGGATTTAACAGAACGGGGCATCTTCAGGAACAGGAGCCATCCTTGAGTGCCTaGCAGCAGTGTCAGTGGCCT	+
Preference number: 4 (lower is better) Translates to: KSQGLFGFNRTGHLQEQEPSLSA*QQCQWP Trigger: AGGCCACTGACACTGCTGGCAGGCACTCAAGGATGG...CTCCTGTTCCTGAAGATGCCCCGTTCTGTTAAATCCAAATAAACCCTGGGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR GCA 90 bp	TTCCCAAGTAAGGATTTCCCAGGGTATCCATACAGGAAATCACAGGACACGAGCTTCTCTGTTAGCTGCTaGGACTGCACCTGGGTTCTG	+
Preference number: 4 (lower is better) Translates to: FPSKDFPGYPYRKSQDTSFSVSC*DCTWVL Trigger: CAGAACCCAGGTGCAGTCGCAGCAGCTAACAGAGAA...GCTCGTGTCCTGTGATTTCCTGTATGGATACCCTGGGAAATCCTTACTTGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR GCA 90 bp	TTCCCAAGTAAGGATTTCCCAGGGTATCCATACAGGAAATCACAGGACACGAGCTCCTTCCTGGCCTGTTaGCTCTCTGTTCCTGAGGAA	+
Preference number: 4 (lower is better) Translates to: FPSKDFPGYPYRKSQDTSSFLAC*LSVPEE Trigger: TTCCTCAGGAACAGAGAGGCAACAGGCCAGGAAGGA...GCTCGTGTCCTGTGATTTCCTGTATGGATACCCTGGGAAATCCTTACTTGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR CAA 72 bp	TCTCTACCTGAGGGCTGGAGTTCCCTACAGACATATTaGCACTGCTGTCACACAAATCCCAGGGTTTATTTG	+
Preference number: 4 (lower is better) Translates to: SLPEGWSSLQTY*HCCHTNPRVYL Trigger: CAAATAAACCCTGGGATTTGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCAGGTAGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR GCA 90 bp	TCGGGAGGTTTGATGAATTCTACTACTTTAACTTTTAAGAGCACACTGCCTTTGGGAGCAGCAGTCTTTTaGTGGTTATGCAGCATCAGA	+
Preference number: 4 (lower is better) Translates to: SGGLMNSTTLTFKSTLPLGAAVF*WLCSIR Trigger: TCTGATGCTGCATAACCAGCAAAAGACTGCTGCTCC...CAAAGGCAGTGTGCTCTTAAAAGTTAAAGTAGTAGAATTCATCAAACCTCCCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
3UTR CAA 72 bp	AATTCTACTACTTTAACTTTTAAGAGCACACTGCCTTaGGAGGCTGAAGGTCAGTTTCATAGGCTCCATCAC	+
Preference number: 4 (lower is better) Translates to: NSTTLTFKSTLP*EAEGQFHRLHH Trigger: GTGATGGAGCCTATGAAACTGACCTTCAGCCTCCAAAGGCAGTGTGCTCTTAAAAGTTAAAGTAGTAGAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR TCA 90 bp	CGAATTAAGCTGTATTCATGTTCAGAATCACCTCTTAGTGTGACAGATTCATTTGTTCTGGCTGTCATCTaGGGAGAGATTTGGATCCAT	+
Preference number: 4 (lower is better) Translates to: RIKLYSCSESPLSVTDSFVLAVI*GEIWIH Trigger: ATGGATCCAAATCTCTCCTCAGATGACAGCCAGAAC...AAATGAATCTGTCACACTAAGAGGTGATTCTGAACATGAATACAGCTTAATTCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR TCA 90 bp	CCTGTATCTTCTCTAATTATTTATCTGGACACGACAACAATAGCCCACTTGTGTTTTTCTCTGTTTTCCTaGAGAACTTTGTTACGTGGC	+
Preference number: 4 (lower is better) Translates to: PVSSLIIYLDTTTIAHLCFSLFS*RTLLRG Trigger: GCCACGTAACAAAGTTCTTCAGGAAAACAGAGAAAA...ACACAAGTGGGCTATTGTTGTCGTGTCCAGATAAATAATTAGAGAAGATACAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS-3UTR TCA 90 bp	CGAATTAAGCTGTATTCATGTTCAGAATCACCTCTTAGTGTGACAGATTCATTTAGAGTGAGACTTTCATaGATAAACTTCTGTTGCTCC	+
Preference number: 4 (lower is better) Translates to: RIKLYSCSESPLSVTDSFRVRLS*INFCCS Trigger: GGAGCAACAGAAGTTTATTCATGAAAGTCTCACTCT...AAATGAATCTGTCACACTAAGAGGTGATTCTGAACATGAATACAGCTTAATTCG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS CCA 72 bp	ACTTCTCTGTTAGCTGCTGCGACTGCACCTGGGTTCTaGCTGTCATCTGAGGAGAGATTTGGATCCATCCTT	+
Preference number: 6 (lower is better) Translates to: TSLLAAATAPGF*LSSEERFGSIL Trigger: AAGGATGGATCCAAATCTCTCCTCAGATGACAGCCAGAACCCAGGTGCAGTCGCAGCAGCTAACAGAGAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS CAA 72 bp	TTCCTGAAGAACTTTGTTACGTGGCTCTTCGAATTCTaGGACCAAGTCCTGTTTTTCCTTCCTGGCCTGTTG	+
Preference number: 6 (lower is better) Translates to: FLKNFVTWLFEF*DQVLFFLPGLL Trigger: CAACAGGCCAGGAAGGAAAAACAGGACTTGGTCCAAGAATTCGAAGAGCCACGTAACAAAGTTCTTCAGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS CAA 72 bp	GCAGCAGTCTTTTGCTGGTTATGCAGCATCAGAAGTTaGATTTCCAAGGTGGCTATAAGACGTCTCAGCTCT	+
Preference number: 6 (lower is better) Translates to: AAVFCWLCSIRS*ISKVAIRRLSS Trigger: AGAGCTGAGACGTCTTATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAAGACTGCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS TCA 72 bp	GAGGTCATGATCCTTGAGAATTTTTCTCTGTTTTCCTaGAGAACTTTGTTACGTGGCTCTTCGAATTCTTGG	+
Preference number: 6 (lower is better) Translates to: EVMILENFSLFS*RTLLRGSSNSW Trigger: CCAAGAATTCGAAGAGCCACGTAACAAAGTTCTTCAGGAAAACAGAGAAAAATTCTCAAGGATCATGACCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080839.2
CDS CAA 90 bp	CATTCTGTTCTTCTGAAGAGTGAGACTTTCATGAATAAACTTCTGTaGCTCCATAAACATATTAGAGAGTGTTTCGGCATGTTTCTTGAG	+
Preference number: 6 (lower is better) Translates to: HSVLLKSETFMNKLL*LHKHIRECFGMFLE Trigger: CTCAAGAAACATGCCGAAACACTCTCTAATATGTTTATGGAGCAACAGAAGTTTATTCATGAAAGTCTCACTCTTCAGAAGAACAGAATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080839.2