Pregenerated sensors for XLR3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057836Ensembl transcript IDs: ENSMUST00000074619.6, ENSMUST00000114524.9, ENSMUST00000172938.2, ENSMUST00000173742.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACCAAGTCCTGTTTTTCCTTCCTGGCCTGTTGCCTCTCTGTTCCTaGGGAAATAATGTCCTCCCTACCAGCATCAAGGACTTCTCTGTT | + |
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Preference number: 1 (lower is better) Translates to: DQVLFFLPGLLPLCS*GNNVLPTSIKDFSV Trigger: AACAGAGAAGTCCTTGATGCTGGTAGGGAGGACATTATTTCCTCAGGAACAGAGAGGCAACAGGCCAGGAAGGAAAAACAGGACTTGGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173742.2 |
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| 3UTR GCA 90 bp | ACATCCAGGAGAGACTGTGGAGGAGCAGCAGTGTTTTGCTGGTTATaGAGCATCAGAAGTTTGATTTCCAAGGTGGCTATGAGACGTCTC | + |
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Preference number: 1 (lower is better) Translates to: TSRRDCGGAAVFCWL*SIRSLISKVAMRRL Trigger: GAGACGTCTCATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAACACTGCTGCTCCTCCACAGTCTCTCCTGGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR GCA 90 bp | GAGAATAACACATCCAGGAGAGACTGTGGAGGAGCAGCAGTGTTTTaGTGGTTATGCAGCATCAGAAGTTTGATTTCCAAGGTGGCTATG | + |
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Preference number: 1 (lower is better) Translates to: ENNTSRRDCGGAAVF*WLCSIRSLISKVAM Trigger: CATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAACACTGCTGCTCCTCCACAGTCTCTCCTGGATGTGTTATTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR CCA 90 bp | AATAACACATCCAGGAGAGACTGTGGAGGAGCAGCAGTGTTTTGCTaGTTATGCAGCATCAGAAGTTTGATTTCCAAGGTGGCTATGAGA | + |
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Preference number: 1 (lower is better) Translates to: NNTSRRDCGGAAVFC*LCSIRSLISKVAMR Trigger: TCTCATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAACACTGCTGCTCCTCCACAGTCTCTCCTGGATGTGTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGCCATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGGGAGCAGCAGTGTTTTaGTGGTTATGCAGCATCAGA | + |
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Preference number: 2 (lower is better) Translates to: PAISTRGLEFPTDIFALLGAAVF*WLCSIR Trigger: TCTGATGCTGCATAACCAGCAAAACACTGCTGCTCC...CAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR-3UTR CCA 90 bp | CCTGCCATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGATCCCAGGGTTTATTTaGATTTTAACAGAACGGGGC | + |
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Preference number: 2 (lower is better) Translates to: PAISTRGLEFPTDIFALLIPGFI*ILTERG Trigger: GCCCCGTTCTGTTAAAATCCAAATAAACCCTGGGAT...CAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGTTTTCCTGAAGAACTTTGTTAGGTGGCTCTTCGAATTCTTGGACCAAGTCGATGTCTGCTGGGGGTaGACACAGCCTTCTGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: SVFLKNFVRWLFEFLDQVDVCWG*TQPSGS Trigger: GCTGCCAGAAGGCTGTGTCCACCCCCAGCAGACATC...GACTTGGTCCAAGAATTCGAAGAGCCACCTAACAAAGTTCTTCAGGAAAACAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173742.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGTTTTCCTGAAGAACTTTGTTAGGTGGCTCTTCGAATTCTTGGACCAAGTCGTGGACACAGCCTTCTaGCAGCCCCTCTGGTTTGTT | + |
|
Preference number: 2 (lower is better) Translates to: SVFLKNFVRWLFEFLDQVVDTAF*QPLWFV Trigger: AACAAACCAGAGGGGCTGCCAGAAGGCTGTGTCCAC...GACTTGGTCCAAGAATTCGAAGAGCCACCTAACAAAGTTCTTCAGGAAAACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173742.2 |
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| 3UTR-3UTR GCA 90 bp | TGGGTTTTCAGAACATCCTTAATTTTGACCTCCATGGCACTGAAAGATGAGGTCTCCTTCCTGGCCTGTTaGCTCTCTGTTCCTGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: WVFRTSLILTSMALKDEVSFLAC*LSVPEE Trigger: TTCCTCAGGAACAGAGAGGCAACAGGCCAGGAAGGA...GACCTCATCTTTCAGTGCCATGGAGGTCAAAATTAAGGATGTTCTGAAAACCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173742.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGTTTTCCTGAAGAACTTTGTTAGGTGGCTCTTCGAATTCTTGGACCAAGTCTTCTGGCAGCCCCTCTaGTTTGTTTGTTTGTGGGTT | + |
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Preference number: 2 (lower is better) Translates to: SVFLKNFVRWLFEFLDQVFWQPL*FVCLWV Trigger: AACCCACAAACAAACAAACCAGAGGGGCTGCCAGAA...GACTTGGTCCAAGAATTCGAAGAGCCACCTAACAAAGTTCTTCAGGAAAACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173742.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTTCCCTACAGACATATTTGCACTGCTGTCACACAAATCCCAGGGTTTATTTATCCCAGGGTTTATTTaGATTTTAACAGAACGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: EFPTDIFALLSHKSQGLFIPGFI*ILTERG Trigger: GCCCCGTTCTGTTAAAATCCAAATAAACCCTGGGAT...AAATAAACCCTGGGATTTGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| 3UTR-3UTR CCA 90 bp | ATATCGGCTTTTGTGCTCCAAAGTTTTATGAGAATAACACATCCAGGAGAGACTGCAGCAGTGTTTTGCTaGTTATGCAGCATCAGAAGT | + |
|
Preference number: 2 (lower is better) Translates to: ISAFVLQSFMRITHPGETAAVFC*LCSIRS Trigger: ACTTCTGATGCTGCATAACCAGCAAAACACTGCTGC...AGTCTCTCCTGGATGTGTTATTCTCATAAAACTTTGGAGCACAAAAGCCGATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR CCA 72 bp | GCTACCAAGGAAAGCCTGCCATCTCTACCCGAGGGCTaGAGTTCCCTACAGACATATTTGCACTGCTGTCAC | + |
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Preference number: 3 (lower is better) Translates to: ATKESLPSLPEG*SSLQTYLHCCH Trigger: GTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGCAGGCTTTCCTTGGTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| 3UTR-3UTR CAA 90 bp | TCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGTCACACAAGGAGCAGCAGTGTTTaGCTGGTTATGCAGCATCAG | + |
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Preference number: 3 (lower is better) Translates to: SLPEGWSSLQTYLHCCHTRSSSV*LVMQHQ Trigger: CTGATGCTGCATAACCAGCAAAACACTGCTGCTCCT...TGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCCATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGTAATCCCAGGGTTTATTaGGATTTTAACAGAACGGGG | + |
|
Preference number: 3 (lower is better) Translates to: LPSLPEGWSSLQTYLHCCNPRVY*DFNRTG Trigger: CCCCGTTCTGTTAAAATCCAAATAAACCCTGGGATT...ACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| 3UTR CCA 72 bp | TCCAGGAGAGACTGTGGAGGAGCAGCAGTGTTTTGCTaGTTATGCAGCATCAGAAGTTTGATTTCCAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: SRRDCGGAAVFC*LCSIRSLISKV Trigger: CACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAACACTGCTGCTCCTCCACAGTCTCTCCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR-3UTR CAA 90 bp | ATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGTCACACAATCCCAGGGTTTATTaGGATTTTAACAGAACGGGG | + |
|
Preference number: 3 (lower is better) Translates to: ISTRGLEFPTDIFALLSHNPRVY*DFNRTG Trigger: CCCCGTTCTGTTAAAATCCAAATAAACCCTGGGATT...GTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| 3UTR GCA 72 bp | CCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTaGTGTCACACAAATCCCAGGGTTTATTTGGATTTT | + |
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Preference number: 3 (lower is better) Translates to: PEGWSSLQTYLH*CHTNPRVYLDF Trigger: AAAATCCAAATAAACCCTGGGATTTGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| 3UTR GCA 72 bp | AGAGACTGTGGAGGAGCAGCAGTGTTTTGCTGGTTATaGAGCATCAGAAGTTTGATTTCCAAGGTGGCTATG | + |
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Preference number: 3 (lower is better) Translates to: RDCGGAAVFCWL*SIRSLISKVAM Trigger: CATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAACACTGCTGCTCCTCCACAGTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR-3UTR CAA 90 bp | GAGTTCCCTACAGACATATTTGCACTGCTGTCACACAAATCCCAGGGTTTATTTAATCCCAGGGTTTATTaGGATTTTAACAGAACGGGG | + |
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Preference number: 3 (lower is better) Translates to: EFPTDIFALLSHKSQGLFNPRVY*DFNRTG Trigger: CCCCGTTCTGTTAAAATCCAAATAAACCCTGGGATT...AAATAAACCCTGGGATTTGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| 3UTR TCA 72 bp | GACCTTGTAAATGTTGTCTGCAAATGGCATTTCCACTaGTTCAAGCCACGTTACTCACATCTTTCTTACTCG | + |
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Preference number: 3 (lower is better) Translates to: DLVNVVCKWHFH*FKPRYSHLSYS Trigger: CGAGTAAGAAAGATGTGAGTAACGTGGCTTGAATCAGTGGAAATGCCATTTGCAGACAACATTTACAAGGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR CCA 90 bp | TCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGTCACACATGCCAGCAGTGTCAGTaGCCTTCCTTTCCCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: SLPEGWSSLQTYLHCCHTCQQCQ*PSFPCL Trigger: CAAGCAGGGAAAGGAAGGCCACTGACACTGCTGGCA...TGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR CCA 90 bp | CTGGACACGACAACAATAGCCCACTTGTGTGCCTTCCAATTTGGGGAGATGATGTGCCAGCAGTGTCAGTaGCCTTCCTTTCCCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LDTTTIAHLCAFQFGEMMCQQCQ*PSFPCL Trigger: CAAGCAGGGAAAGGAAGGCCACTGACACTGCTGGCA...CATCATCTCCCCAAATTGGAAGGCACACAAGTGGGCTATTGTTGTCGTGTCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR GCA 90 bp | GCCATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGTCAGGAGCAGCAGTGTTTTaGTGGTTATGCAGCATCAGA | + |
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Preference number: 4 (lower is better) Translates to: AISTRGLEFPTDIFALLSGAAVF*WLCSIR Trigger: TCTGATGCTGCATAACCAGCAAAACACTGCTGCTCC...TGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR CCA 90 bp | TGTTTTTCCTTCCTGGCCTGTTGCCTCTCTGTTCCTGAGGAAATAATGTCCTCCTGCCAGCAGTGTCAGTaGCCTTCCTTTCCCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: CFSFLACCLSVPEEIMSSCQQCQ*PSFPCL Trigger: CAAGCAGGGAAAGGAAGGCCACTGACACTGCTGGCA...GGAGGACATTATTTCCTCAGGAACAGAGAGGCAACAGGCCAGGAAGGAAAAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173742.2 |
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| CDS-3UTR CCA 90 bp | GCCATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGTCAGCAGCAGTGTTTTGCTaGTTATGCAGCATCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: AISTRGLEFPTDIFALLSAAVFC*LCSIRS Trigger: ACTTCTGATGCTGCATAACCAGCAAAACACTGCTGC...TGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR TCA 90 bp | CCTGCCATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGAGAGTGAGAGTTTCATaGATAAACTTCTGTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PAISTRGLEFPTDIFALLRVRVS*INFCCS Trigger: GGAGCAACAGAAGTTTATTCATGAAACTCTCACTCT...CAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| 3UTR CAA 72 bp | TCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTaGCACTGCTGTCACACAAATCCCAGGGTTTATTTG | + |
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Preference number: 4 (lower is better) Translates to: SLPEGWSSLQTY*HCCHTNPRVYL Trigger: CAAATAAACCCTGGGATTTGTGTGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000172938.2 |
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| CDS-3UTR GCA 90 bp | GTCAGTTTCATAGGCTCCATCACTGAACACATTTCAGAGCAGAATGTCAAAGAAACCTCCAGTTTCTGCTaGGACTGCACCTGGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: VSFIGSITEHISEQNVKETSSFC*DCTWVL Trigger: CAGAACCCAGGTGCAGTCGCAGCAGAAACTGGAGGT...TTCTTTGACATTCTGCTCTGAAATGTGTTCAGTGATGGAGCCTATGAAACTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| 3UTR CAA 72 bp | GCAGCAGTGTTTTGCTGGTTATGCAGCATCAGAAGTTaGATTTCCAAGGTGGCTATGAGACGTCTCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: AAVFCWLCSIRS*ISKVAMRRLSS Trigger: AGAGCTGAGACGTCTCATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAACACTGCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| CDS-3UTR CCA 90 bp | TTGGATTTTAACAGAACGGGGCATCTTCAGGAACAGGAGGAAGACAGGAGAAGAGCAGCAGTGTTTTGCTaGTTATGCAGCATCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: LDFNRTGHLQEQEEDRRRAAVFC*LCSIRS Trigger: ACTTCTGATGCTGCATAACCAGCAAAACACTGCTGC...TCTTCTCCTGTCTTCCTCCTGTTCCTGAAGATGCCCCGTTCTGTTAAAATCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| 3UTR CAA 72 bp | TTCCTGAAGAACTTTGTTAGGTGGCTCTTCGAATTCTaGGACCAAGTCCTGTTTTTCCTTCCTGGCCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: FLKNFVRWLFEF*DQVLFFLPGLL Trigger: CAACAGGCCAGGAAGGAAAAACAGGACTTGGTCCAAGAATTCGAAGAGCCACCTAACAAAGTTCTTCAGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173742.2 |
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| CDS-3UTR GCA 90 bp | ATATCGGCTTTTGTGCTCCAAAGTTTTATGAGAATAACACATCCAGGAGAGACTAGTACCTCCAGTTTCTaGTGCGACTGCACCTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: ISAFVLQSFMRITHPGETSTSSF*CDCTWV Trigger: AACCCAGGTGCAGTCGCAGCAGAAACTGGAGGTACT...AGTCTCTCCTGGATGTGTTATTCTCATAAAACTTTGGAGCACAAAAGCCGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172938.2 |
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| CDS-3UTR TCA 90 bp | TTGGATTTTAACAGAACGGGGCATCTTCAGGAACAGGAGGAAGACAGGAGAAGAAGAGTGAGAGTTTCATaGATAAACTTCTGTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LDFNRTGHLQEQEEDRRRRVRVS*INFCCS Trigger: GGAGCAACAGAAGTTTATTCATGAAACTCTCACTCT...TCTTCTCCTGTCTTCCTCCTGTTCCTGAAGATGCCCCGTTCTGTTAAAATCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR GCA 90 bp | AAGGTCAGTTTCATAGGCTCCATCACTGAACACATTTCAGAGCAGAATGTCAAAGGAGCAGCAGTGTTTTaGTGGTTATGCAGCATCAGA | + |
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Preference number: 4 (lower is better) Translates to: KVSFIGSITEHISEQNVKGAAVF*WLCSIR Trigger: TCTGATGCTGCATAACCAGCAAAACACTGCTGCTCC...TTTGACATTCTGCTCTGAAATGTGTTCAGTGATGGAGCCTATGAAACTGACCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR CCA 90 bp | ACGCGAGCTTTAACTGTACACGAGACCTCATATATAATATCCCTGATGATCCCAGGCTCTTCGAATTCTTaGACCAAGTCCTGTTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: TRALTVHETSYIISLMIPGSSNS*TKSCFS Trigger: GGAAAAACAGGACTTGGTCCAAGAATTCGAAGAGCC...TGGGATCATCAGGGATATTATATATGAGGTCTCGTGTACAGTTAAAGCTCGCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR CCA 90 bp | ACAATAGCCCACTTGTGTGCCTTCCAATTTGGGGAGATGATGTTCAGGTATGATTGCCTCTGTTCACACTaGGTTTTCAGAACATCCTTA | + |
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Preference number: 4 (lower is better) Translates to: TIAHLCAFQFGEMMFRYDCLCSH*VFRTSL Trigger: TAAGGATGTTCTGAAAACCCAGTGTGAACAGAGGCA...ATCATACCTGAACATCATCTCCCCAAATTGGAAGGCACACAAGTGGGCTATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| 3UTR CAA 72 bp | AATTCTACTACTTTAACTATTAAGAGCACACTGCCTTaGGAGGCTGAAGGTCAGTTTCATAGGCTCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: NSTTLTIKSTLP*EAEGQFHRLHH Trigger: GTGATGGAGCCTATGAAACTGACCTTCAGCCTCCAAAGGCAGTGTGCTCTTAATAGTTAAAGTAGTAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR CAA 90 bp | GCCATCTCTACCCGAGGGCTGGAGTTCCCTACAGACATATTTGCACTGCTGTCAAGGAGCAGCAGTGTTTaGCTGGTTATGCAGCATCAG | + |
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Preference number: 5 (lower is better) Translates to: AISTRGLEFPTDIFALLSRSSSV*LVMQHQ Trigger: CTGATGCTGCATAACCAGCAAAACACTGCTGCTCCT...TGACAGCAGTGCAAATATGTCTGTAGGGAACTCCAGCCCTCGGGTAGAGATGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS-3UTR CAA 90 bp | TCAAAGAAAGCCTGTATCTTCTCTAATTATTTATCTGGACACGACAACAATAGCAGGAGCAGCAGTGTTTaGCTGGTTATGCAGCATCAG | + |
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Preference number: 5 (lower is better) Translates to: SKKACIFSNYLSGHDNNSRSSSV*LVMQHQ Trigger: CTGATGCTGCATAACCAGCAAAACACTGCTGCTCCT...GCTATTGTTGTCGTGTCCAGATAAATAATTAGAGAAGATACAGGCTTTCTTTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS TCA 90 bp | AGAATCCCTCAGTACCTCCAGTTTCTCCAAGTATTTTTCACACAGTaGTTTAAATTCCTCCATTCTGTTCTTCTGGAGAGTGAGAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: RIPQYLQFLQVFFTQ*FKFLHSVLLESESF Trigger: GAAACTCTCACTCTCCAGAAGAACAGAATGGAGGAATTTAAATCACTGTGTGAAAAATACTTGGAGAAACTGGAGGTACTGAGGGATTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS TCA 90 bp | GATTTAAATTCCTCCATTCTGTTCTTCTGGAGAGTGAGAGTTTCATaGATAAACTTCTGTTGCTCCATAAACATATTAGAGAGTGTTTCG | + |
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Preference number: 5 (lower is better) Translates to: DLNSSILFFWRVRVS*INFCCSINILESVS Trigger: CGAAACACTCTCTAATATGTTTATGGAGCAACAGAAGTTTATTCATGAAACTCTCACTCTCCAGAAGAACAGAATGGAGGAATTTAAATC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS GCA 72 bp | CATCTGAGGAGAGATTTGGATCCATCCTTGAGTGCCTaGCAGCAGTGTCAGTGGCCTTCCTTTCCCTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: HLRRDLDPSLSA*QQCQWPSFPCL Trigger: CAAGCAGGGAAAGGAAGGCCACTGACACTGCTGGCAGGCACTCAAGGATGGATCCAAATCTCTCCTCAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 ENSMUST00000173742.2 |
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| CDS CAA 90 bp | TGTGGAGGAGCAGCAGTGTTTTGCTGGTTATGCAGCATCAGAAGTTaGATTTCCAAGGTGGCTATGAGACGTCTCAGCTCTTCAGCGATG | + |
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Preference number: 6 (lower is better) Translates to: CGGAAVFCWLCSIRS*ISKVAMRRLSSSAM Trigger: CATCGCTGAAGAGCTGAGACGTCTCATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAGCAAAACACTGCTGCTCCTCCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS CAA 90 bp | AGTTTCTGCCTCTGTTCACACTGGGTTTTCAGAACATCCTTAATTTaGACCTCCATGGCACTGAAAGATGAGGTCATGATCCTTGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: SFCLCSHWVFRTSLI*TSMALKDEVMILEN Trigger: ATTCTCAAGGATCATGACCTCATCTTTCAGTGCCATGGAGGTCAAAATTAAGGATGTTCTGAAAACCCAGTGTGAACAGAGGCAGAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS CAA 72 bp | CTTCTGGAGAGTGAGAGTTTCATGAATAAACTTCTGTaGCTCCATAAACATATTAGAGAGTGTTTCGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: LLESESFMNKLL*LHKHIRECFGL Trigger: CAGGCCGAAACACTCTCTAATATGTTTATGGAGCAACAGAAGTTTATTCATGAAACTCTCACTCTCCAGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS CAA 90 bp | CATTCTGTTCTTCTGGAGAGTGAGAGTTTCATGAATAAACTTCTGTaGCTCCATAAACATATTAGAGAGTGTTTCGGCCTGTTTCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: HSVLLESESFMNKLL*LHKHIRECFGLFLE Trigger: CTCAAGAAACAGGCCGAAACACTCTCTAATATGTTTATGGAGCAACAGAAGTTTATTCATGAAACTCTCACTCTCCAGAAGAACAGAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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| CDS TCA 72 bp | TCCTCCATTCTGTTCTTCTGGAGAGTGAGAGTTTCATaGATAAACTTCTGTTGCTCCATAAACATATTAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSILFFWRVRVS*INFCCSINILE Trigger: CTCTAATATGTTTATGGAGCAACAGAAGTTTATTCATGAAACTCTCACTCTCCAGAAGAACAGAATGGAGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074619.6 ENSMUST00000114524.9 |
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