Pregenerated sensors for XLR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054626Ensembl transcript IDs: ENSMUST00000067763.10, ENSMUST00000067782.8, ENSMUST00000114810.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAACTCGGAGGCAGCTGCATCACCAAAGCCCACCCCAGGATGGGTaGGAGCTCACAAAGCCGGGGACCTGGAGCACACTGCACAGCCTG | + |
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Preference number: 1 (lower is better) Translates to: ITRRQLHHQSPPQDG*ELTKPGTWSTLHSL Trigger: CAGGCTGTGCAGTGTGCTCCAGGTCCCCGGCTTTGTGAGCTCTCACCCATCCTGGGGTGGGCTTTGGTGATGCAGCTGCCTCCGAGTTAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR GCA 90 bp | CCCAGGATGGGTGAGAGCTCACAAAGCCGGGGACCTGGAGCACACTaGACAGCCTGCAGGCAGCTCAACAGGTTGGAGAGAGTCCTTTCC | + |
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Preference number: 1 (lower is better) Translates to: PRMGESSQSRGPGAH*TACRQLNRLERVLS Trigger: GGAAAGGACTCTCTCCAACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTCCAGGTCCCCGGCTTTGTGAGCTCTCACCCATCCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CCA 90 bp | GGGGACCTGGAGCACACTGCACAGCCTGCAGGCAGCTCAACAGGTTaGAGAGAGTCCTTTCCACGTGTCTCAGTGGGTCTAAACCTCTTC | + |
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Preference number: 1 (lower is better) Translates to: GDLEHTAQPAGSSTG*RESFPRVSVGLNLF Trigger: GAAGAGGTTTAGACCCACTGAGACACGTGGAAAGGACTCTCTCCAACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTCCAGGTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR GCA 90 bp | TCAGAGCTGGCAAGAAGGCTGAGCCAGTCAAATGTCTTGTTTCCCTaGCTGCCACCTGAATTTCAAGGCCTGAATCCACATGGGAGAAAG | + |
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Preference number: 1 (lower is better) Translates to: SELARRLSQSNVLFP*LPPEFQGLNPHGRK Trigger: CTTTCTCCCATGTGGATTCAGGCCTTGAAATTCAGGTGGCAGGCAGGGAAACAAGACATTTGACTGGCTCAGCCTTCTTGCCAGCTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR TCA 90 bp | AGTCAAATGTCTTGTTTCCCTGCCTGCCACCTGAATTTCAAGGCCTaGATCCACATGGGAGAAAGGGAGAATTCCACTGAGTTGTTCTTA | + |
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Preference number: 1 (lower is better) Translates to: SQMSCFPACHLNFKA*IHMGERENSTELFL Trigger: TAAGAACAACTCAGTGGAATTCTCCCTTTCTCCCATGTGGATTCAGGCCTTGAAATTCAGGTGGCAGGCAGGGAAACAAGACATTTGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CCA 90 bp | ATAATTAAACCATTTGGTGTTATATTTTTCAACATGGTAGTGAAATaGCTGAGGGGCCAGAGAAAGGTACTTGCCACCAAACCTGATGGA | + |
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Preference number: 1 (lower is better) Translates to: IIKPFGVIFFNMVVK*LRGQRKVLATKPDG Trigger: TCCATCAGGTTTGGTGGCAAGTACCTTTCTCTGGCCCCTCAGCCATTTCACTACCATGTTGAAAAATATAACACCAAATGGTTTAATTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR GCA 90 bp | AATCTGACTTTGAGTACAGAACTCCAGAAATTGATCACTGATTTCTaGAAATTGTCCTTTGACCTCTACACTGTTGTCATTGTGCTCTTG | + |
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Preference number: 1 (lower is better) Translates to: NLTLSTELQKLITDF*KLSFDLYTVVIVLL Trigger: CAAGAGCACAATGACAACAGTGTAGAGGTCAAAGGACAATTTGCAGAAATCAGTGATCAATTTCTGGAGTTCTGTACTCAAAGTCAGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CAA 90 bp | CGGGGACCTGGAGCACACTGCACAGCCTGCAGGCAGCTCAACAGGTaGGAGAGAGTCCTTTCCACGTGTCTCAGTGGGTCTAAACCTCTT | + |
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Preference number: 2 (lower is better) Translates to: RGPGAHCTACRQLNR*ERVLSTCLSGSKPL Trigger: AAGAGGTTTAGACCCACTGAGACACGTGGAAAGGACTCTCTCCAACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTCCAGGTCCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR-3UTR CCA 90 bp | TTGAACTTTAGGCCATTGAATGCTGTATGCATTAAAGATGGCAAAATCAGAGCTACAAAGCCGGGGACCTaGAGCACACTGCACAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: LNFRPLNAVCIKDGKIRATKPGT*STLHSL Trigger: CAGGCTGTGCAGTGTGCTCCAGGTCCCCGGCTTTGT...AGCTCTGATTTTGCCATCTTTAATGCATACAGCATTCAATGGCCTAAAGTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CAA 90 bp | ACTTTGAGTACAGAACTCCAGAAATTGATCACTGATTTCTGCAAATaGTCCTTTGACCTCTACACTGTTGTCATTGTGCTCTTGTATTCA | + |
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Preference number: 2 (lower is better) Translates to: TLSTELQKLITDFCK*SFDLYTVVIVLLYS Trigger: TGAATACAAGAGCACAATGACAACAGTGTAGAGGTCAAAGGACAATTTGCAGAAATCAGTGATCAATTTCTGGAGTTCTGTACTCAAAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR TCA 72 bp | AGGCAGCTGCATCACCAAAGCCCACCCCAGGATGGGTaGGAGCTCACAAAGCCGGGGACCTGGAGCACACTG | + |
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Preference number: 3 (lower is better) Translates to: RQLHHQSPPQDG*ELTKPGTWSTL Trigger: CAGTGTGCTCCAGGTCCCCGGCTTTGTGAGCTCTCACCCATCCTGGGGTGGGCTTTGGTGATGCAGCTGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR GCA 72 bp | GGTGAGAGCTCACAAAGCCGGGGACCTGGAGCACACTaGACAGCCTGCAGGCAGCTCAACAGGTTGGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: GESSQSRGPGAH*TACRQLNRLER Trigger: TCTCTCCAACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTCCAGGTCCCCGGCTTTGTGAGCTCTCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR GCA 72 bp | TCACAAAGCCGGGGACCTGGAGCACACTGCACAGCCTaGAGGCAGCTCAACAGGTTGGAGAGAGTCCTTTCC | + |
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Preference number: 3 (lower is better) Translates to: SQSRGPGAHCTA*RQLNRLERVLS Trigger: GGAAAGGACTCTCTCCAACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTCCAGGTCCCCGGCTTTGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CCA 72 bp | GAGCACACTGCACAGCCTGCAGGCAGCTCAACAGGTTaGAGAGAGTCCTTTCCACGTGTCTCAGTGGGTCTA | + |
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Preference number: 3 (lower is better) Translates to: EHTAQPAGSSTG*RESFPRVSVGL Trigger: TAGACCCACTGAGACACGTGGAAAGGACTCTCTCCAACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR TCA 72 bp | GAGCCAGTCAAATGTCTTGTTTCCCTGCCTGCCACCTaGATTTCAAGGCCTGAATCCACATGGGAGAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: EPVKCLVSLPAT*ISRPESTWEKG Trigger: CCCTTTCTCCCATGTGGATTCAGGCCTTGAAATTCAGGTGGCAGGCAGGGAAACAAGACATTTGACTGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR GCA 72 bp | GCAAGAAGGCTGAGCCAGTCAAATGTCTTGTTTCCCTaGCTGCCACCTGAATTTCAAGGCCTGAATCCACAT | + |
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Preference number: 3 (lower is better) Translates to: ARRLSQSNVLFP*LPPEFQGLNPH Trigger: ATGTGGATTCAGGCCTTGAAATTCAGGTGGCAGGCAGGGAAACAAGACATTTGACTGGCTCAGCCTTCTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR TCA 72 bp | CTTGCCACCAAACCTGATGGACTGAGCTGGAGTTCCTaGATCCATGATGTAGAAGGAGAGAACCAATTCTTG | + |
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Preference number: 3 (lower is better) Translates to: LATKPDGLSWSS*IHDVEGENQFL Trigger: CAAGAATTGGTTCTCTCCTTCTACATCATGGATTCAGGAACTCCAGCTCAGTCCATCAGGTTTGGTGGCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR TCA 72 bp | CATGAGTATTACTGGGATTCCTTACAGGAATATGTGTaGGGGGTTACTTACAGGAGCAGAAATAACTCGGAG | + |
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Preference number: 3 (lower is better) Translates to: HEYYWDSLQEYV*GVTYRSRNNSE Trigger: CTCCGAGTTATTTCTGCTCCTGTAAGTAACCCCTCACACATATTCCTGTAAGGAATCCCAGTAATACTCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CAA 72 bp | GGAGCACACTGCACAGCCTGCAGGCAGCTCAACAGGTaGGAGAGAGTCCTTTCCACGTGTCTCAGTGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: GAHCTACRQLNR*ERVLSTCLSGS Trigger: AGACCCACTGAGACACGTGGAAAGGACTCTCTCCAACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR GCA 90 bp | CACAAAGCCGGGGACCTGGAGCACACTGCACAGCCTGCAGGCAGCTCAACAGGTGGAGCATTCCCATCTTaGATTTCATCACTTGACAAG | + |
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Preference number: 4 (lower is better) Translates to: HKAGDLEHTAQPAGSSTGGAFPS*ISSLDK Trigger: CTTGTCAAGTGATGAAATGCAAGATGGGAATGCTCC...ACCTGTTGAGCTGCCTGCAGGCTGTGCAGTGTGCTCCAGGTCCCCGGCTTTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CAA 72 bp | TCAGAGCTGGCAAGAAGGCTGAGCCAGTCAAATGTCTaGTTTCCCTGCCTGCCACCTGAATTTCAAGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: SELARRLSQSNV*FPCLPPEFQGL Trigger: CAGGCCTTGAAATTCAGGTGGCAGGCAGGGAAACAAGACATTTGACTGGCTCAGCCTTCTTGCCAGCTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR TCA 90 bp | CCCTGCCTGCCACCTGAATTTCAAGGCCTGAATCCACATGGGAGAAAGGGAGAACGTTTTCTCTTTATGTaGAGCCTCTTGTTAATGTCA | + |
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Preference number: 4 (lower is better) Translates to: PCLPPEFQGLNPHGRKGERFLFM*SLLLMS Trigger: TGACATTAACAAGAGGCTTCACATAAAGAGAAAACG...TTCTCCCTTTCTCCCATGTGGATTCAGGCCTTGAAATTCAGGTGGCAGGCAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR CCA 90 bp | GGTTGGAGAGAGTCCTTTCCACGTGTCTCAGTGGGTCTAAACCTCTTCCAGGCAGGCTCTGACTACATTTaGACAGTTTTAATGCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: GWRESFPRVSVGLNLFQAGSDYI*TVLMLV Trigger: AACAAGCATTAAAACTGTCCAAATGTAGTCAGAGCC...TGCCTGGAAGAGGTTTAGACCCACTGAGACACGTGGAAAGGACTCTCTCCAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR GCA 90 bp | CTTGGTGGACCCATGAGTATTACTGGGATTCCTTACAGGAATATGTGTGAGGGGTACTTCTTCAGGATTTaGATTCTCATCATCACGAGT | + |
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Preference number: 4 (lower is better) Translates to: LGGPMSITGIPYRNMCEGYFFRI*ILIITS Trigger: ACTCGTGATGATGAGAATGCAAATCCTGAAGAAGTA...CCCCTCACACATATTCCTGTAAGGAATCCCAGTAATACTCATGGGTCCACCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR GCA 90 bp | GTAATAACTTCACTGGGGGTTAACTTCCTTCTTAGAATCATCAGAATAACAAGGGGAGCATTCCCATCTTaGATTTCATCACTTGACAAG | + |
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Preference number: 4 (lower is better) Translates to: VITSLGVNFLLRIIRITRGAFPS*ISSLDK Trigger: CTTGTCAAGTGATGAAATGCAAGATGGGAATGCTCC...CCTTGTTATTCTGATGATTCTAAGAAGGAAGTTAACCCCCAGTGAAGTTATTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067763.10 ENSMUST00000114810.2 |
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| 3UTR CAA 72 bp | CTGATTTCTGCAAATTGTCCTTTGACCTCTACACTGTaGTCATTGTGCTCTTGTATTCACATACAAACACAC | + |
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Preference number: 4 (lower is better) Translates to: LISANCPLTSTL*SLCSCIHIQTH Trigger: GTGTGTTTGTATGTGAATACAAGAGCACAATGACAACAGTGTAGAGGTCAAAGGACAATTTGCAGAAATCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR TCA 90 bp | GTAATAACTTCACTGGGGGTTAACTTCCTTCTTAGAATCATCAGAATAACAAGGTTGCATTTCATCACTTaGCAAGTCCCAGTTTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: VITSLGVNFLLRIIRITRLHFIT*QVPVFH Trigger: ATGGAAAACTGGGACTTGTCAAGTGATGAAATGCAA...CCTTGTTATTCTGATGATTCTAAGAAGGAAGTTAACCCCCAGTGAAGTTATTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067763.10 ENSMUST00000114810.2 |
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| CDS-3UTR TCA 90 bp | TTGCCACTAAATCTGACTTTGAGTACAGAACTCCAGAAATTGATCACTGATTTCTTGCATTTCATCACTTaGCAAGTCCCAGTTTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LPLNLTLSTELQKLITDFLHFIT*QVPVFH Trigger: ATGGAAAACTGGGACTTGTCAAGTGATGAAATGCAA...GAAATCAGTGATCAATTTCTGGAGTTCTGTACTCAAAGTCAGATTTAGTGGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| 3UTR CAA 72 bp | TCTGCAAATTGTCCTTTGACCTCTACACTGTTGTCATaGTGCTCTTGTATTCACATACAAACACACAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: SANCPLTSTLLS*CSCIHIQTHRK Trigger: TTTTCTGTGTGTTTGTATGTGAATACAAGAGCACAATGACAACAGTGTAGAGGTCAAAGGACAATTTGCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR TCA 90 bp | GTAATAACTTCACTGGGGGTTAACTTCCTTCTTAGAATCATCAGAATAACAAGGCGTTTTCTCTTTATGTaGAGCCTCTTGTTAATGTCA | + |
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Preference number: 4 (lower is better) Translates to: VITSLGVNFLLRIIRITRRFLFM*SLLLMS Trigger: TGACATTAACAAGAGGCTTCACATAAAGAGAAAACG...CCTTGTTATTCTGATGATTCTAAGAAGGAAGTTAACCCCCAGTGAAGTTATTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067763.10 ENSMUST00000114810.2 |
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| CDS-3UTR GCA 90 bp | GTAATAACTTCACTGGGGGTTAACTTCCTTCTTAGAATCATCAGAATAACAAGGTACTTCTTCAGGATTTaGATTCTCATCATCACGAGT | + |
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Preference number: 4 (lower is better) Translates to: VITSLGVNFLLRIIRITRYFFRI*ILIITS Trigger: ACTCGTGATGATGAGAATGCAAATCCTGAAGAAGTA...CCTTGTTATTCTGATGATTCTAAGAAGGAAGTTAACCCCCAGTGAAGTTATTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067763.10 ENSMUST00000114810.2 |
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| CDS-3UTR CCA 90 bp | GTAATAACTTCACTGGGGGTTAACTTCCTTCTTAGAATCATCAGAATAACAAGGGGCTCTGACTACATTTaGACAGTTTTAATGCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: VITSLGVNFLLRIIRITRGSDYI*TVLMLV Trigger: AACAAGCATTAAAACTGTCCAAATGTAGTCAGAGCC...CCTTGTTATTCTGATGATTCTAAGAAGGAAGTTAACCCCCAGTGAAGTTATTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000067763.10 ENSMUST00000114810.2 |
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| CDS-3UTR CAA 90 bp | AGGTTGGAGAGAGTCCTTTCCACGTGTCTCAGTGGGTCTAAACCTCTTCCAGGCCTTGCATTTCATCACTaGACAAGTCCCAGTTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: RLERVLSTCLSGSKPLPGLAFHH*TSPSFP Trigger: TGGAAAACTGGGACTTGTCAAGTGATGAAATGCAAG...GCCTGGAAGAGGTTTAGACCCACTGAGACACGTGGAAAGGACTCTCTCCAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067782.8 |
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| CDS-3UTR CAA 90 bp | GTAATAACTTCACTGGGGGTTAACTTCCTTCTTAGAATCATCAGAATAACAAGGCTTGCATTTCATCACTaGACAAGTCCCAGTTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: VITSLGVNFLLRIIRITRLAFHH*TSPSFP Trigger: TGGAAAACTGGGACTTGTCAAGTGATGAAATGCAAG...CCTTGTTATTCTGATGATTCTAAGAAGGAAGTTAACCCCCAGTGAAGTTATTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067763.10 ENSMUST00000114810.2 |
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| CDS CCA 90 bp | CCTCTTGTTAATGTCACCTTCAAATTTTCCCAGAATATTTTGTACTaGAGATCGTGTATCTCCAACTACTTCTTCAGGATTTGCATTCTC | + |
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Preference number: 5 (lower is better) Translates to: PLVNVTFKFSQNILY*RSCISNYFFRICIL Trigger: GAGAATGCAAATCCTGAAGAAGTAGTTGGAGATACACGATCTCCAGTACAAAATATTCTGGGAAAATTTGAAGGTGACATTAACAAGAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067763.10 ENSMUST00000067782.8 ENSMUST00000114810.2 |
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| CDS TCA 72 bp | TCATGCATGTCTTTAATTGCTTCCAGGGTCTGGCTCTaGCTACATTTGGACAGTTTTAATGCTTGTTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SCMSLIASRVWL*LHLDSFNACCS Trigger: AGAACAACAAGCATTAAAACTGTCCAAATGTAGTCAGAGCCAGACCCTGGAAGCAATTAAAGACATGCATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067763.10 ENSMUST00000067782.8 ENSMUST00000114810.2 |
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| CDS CAA 90 bp | GTGAAGCCTCTTGTTAATGTCACCTTCAAATTTTCCCAGAATATTTaGTACTGGAGATCGTGTATCTCCAACTACTTCTTCAGGATTTGC | + |
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Preference number: 6 (lower is better) Translates to: VKPLVNVTFKFSQNI*YWRSCISNYFFRIC Trigger: GCAAATCCTGAAGAAGTAGTTGGAGATACACGATCTCCAGTACAAAATATTCTGGGAAAATTTGAAGGTGACATTAACAAGAGGCTTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067763.10 ENSMUST00000067782.8 ENSMUST00000114810.2 |
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| CDS CCA 72 bp | TTCTTCAGGATTTGCATTCTCATCATCACGAGTTACTaGATTATGTTCTTCAATAACGTCCAATTCTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: FFRICILIITSY*IMFFNNVQFWS Trigger: GCTCCAGAATTGGACGTTATTGAAGAACATAATCCAGTAACTCGTGATGATGAGAATGCAAATCCTGAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067763.10 ENSMUST00000067782.8 ENSMUST00000114810.2 |
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| CDS CAA 72 bp | CTTGTTAATGTCACCTTCAAATTTTCCCAGAATATTTaGTACTGGAGATCGTGTATCTCCAACTACTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LVNVTFKFSQNI*YWRSCISNYFF Trigger: GAAGAAGTAGTTGGAGATACACGATCTCCAGTACAAAATATTCTGGGAAAATTTGAAGGTGACATTAACAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067763.10 ENSMUST00000067782.8 ENSMUST00000114810.2 |
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