Pregenerated sensors for XKRX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031258Ensembl transcript IDs: ENSMUST00000033611.5
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCTCTAATGGGGCACCCGAAATTTCATTCAAACATTTCTCTCAATaGGGCTGGAGGCCTACACAGGTCCTTAAGAGGCATTCTGGGGGC | + |
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Preference number: 1 (lower is better) Translates to: SSNGAPEISFKHFSQ*GWRPTQVLKRHSGG Trigger: GCCCCCAGAATGCCTCTTAAGGACCTGTGTAGGCCTCCAGCCTCATTGAGAGAAATGTTTGAATGAAATTTCGGGTGCCCCATTAGAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR TCA 90 bp | AGGTCACTCTTTCTTTCAATAGGTTTACTAGAAGTGTCAAGCAAATaGTCCTGTGAGTACTCACACACAGGGATCTCACCAACTCCTTCA | + |
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Preference number: 1 (lower is better) Translates to: RSLFLSIGLLEVSSK*SCEYSHTGISPTPS Trigger: TGAAGGAGTTGGTGAGATCCCTGTGTGTGAGTACTCACAGGATCATTTGCTTGACACTTCTAGTAAACCTATTGAAAGAAAGAGTGACCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR-3UTR TCA 90 bp | CTACACAGGTCCTTAAGAGGCATTCTGGGGGCCAAGGATGTCTCAGTTGGTAGACCAGTCCGAGAGTCATaGGATCCCGCCTCATTCCCT | + |
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Preference number: 2 (lower is better) Translates to: LHRSLRGILGAKDVSVGRPVRES*DPASFP Trigger: AGGGAATGAGGCGGGATCTCATGACTCTCGGACTGG...TCTACCAACTGAGACATCCTTGGCCCCCAGAATGCCTCTTAAGGACCTGTGTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR-3UTR TCA 90 bp | ACAGTTAAAAGTACAACAGCCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCTCAAGCAAATGATCCTGTaGGTACTCACACACAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: TVKSTTASQAVVAHAFNLKQMIL*VLTHRD Trigger: ATCCCTGTGTGTGAGTACTCACAGGATCATTTGCTT...GAGATTAAAGGCATGCGCCACCACCGCCTGGCTGGCTGTTGTACTTTTAACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR-3UTR TCA 90 bp | GCCTTTAATCTCAGCACTTGGGAGGAAGAGGAAGGTGGATTTCTGAGTTTGAGGTGGAAATTCAGAGCCTaGGTGAAGGACATAGAGGTT | + |
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Preference number: 2 (lower is better) Translates to: AFNLSTWEEEEGGFLSLRWKFRA*VKDIEV Trigger: AACCTCTATGTCCTTCACTCAGGCTCTGAATTTCCA...CCTCAAACTCAGAAATCCACCTTCCTCTTCCTCCCAAGTGCTGAGATTAAAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR-3UTR GCA 90 bp | GCGCATGCCTTTAATCTCAGCACTTGGGAGGAAGAGGAAGGTGGATTTCTGAGTGAAGTAAAACCTCTTTaGAGGTCACTCTTTCTTTCA | + |
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Preference number: 2 (lower is better) Translates to: AHAFNLSTWEEEEGGFLSEVKPL*RSLFLS Trigger: TGAAAGAAAGAGTGACCTGCAAAGAGGTTTTACTTC...ACTCAGAAATCCACCTTCCTCTTCCTCCCAAGTGCTGAGATTAAAGGCATGCGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR CAA 90 bp | GAGTACTCACACACAGGGATCTCACCAACTCCTTCAATTTCACAGTaGCTTGTGTTAACCCAGACCCATCCTATAATGTACAGAAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: EYSHTGISPTPSISQ*LVLTQTHPIMYRRK Trigger: TTTTCTTCTGTACATTATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGAGATCCCTGTGTGTGAGTACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR-3UTR CCA 90 bp | GAATCTTATTCTGTACGCCGTCCAAAGAGAGTGCCTATGAAGGATTTCTTAAAGTTTAATCTCAGCACTTaGGAGGAAGAGGAAGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: ESYSVRRPKRVPMKDFLKFNLST*EEEEGG Trigger: TCCACCTTCCTCTTCCTCCCAAGTGCTGAGATTAAA...CTTTAAGAAATCCTTCATAGGCACTCTCTTTGGACGGCGTACAGAATAAGATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR-3UTR TCA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGAATACCTTAAGCAAATaGGCAAAGCTGGAAATTCAG | + |
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Preference number: 2 (lower is better) Translates to: RIQISQPLSQLKVQQPARNTLSK*AKLEIQ Trigger: CTGAATTTCCAGCTTTGCTCATTTGCTTAAGGTATT...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR TCA 72 bp | GGGGCACCCGAAATTTCATTCAAACATTTCTCTCAATaGGGCTGGAGGCCTACACAGGTCCTTAAGAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: GAPEISFKHFSQ*GWRPTQVLKRH Trigger: ATGCCTCTTAAGGACCTGTGTAGGCCTCCAGCCTCATTGAGAGAAATGTTTGAATGAAATTTCGGGTGCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR TCA 72 bp | ATTAGCCCAGGGAAGCTCAGCAATACCTTAAGCAAATaGGCAAAGCTGGAAATTCAGAGCCTGAGTGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: ISPGKLSNTLSK*AKLEIQSLSEG Trigger: TCCTTCACTCAGGCTCTGAATTTCCAGCTTTGCTCATTTGCTTAAGGTATTGCTGAGCTTCCCTGGGCTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR TCA 72 bp | AATAGGTTTACTAGAAGTGTCAAGCAAATGATCCTGTaGGTACTCACACACAGGGATCTCACCAACTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: NRFTRSVKQMIL*VLTHRDLTNSF Trigger: GAAGGAGTTGGTGAGATCCCTGTGTGTGAGTACTCACAGGATCATTTGCTTGACACTTCTAGTAAACCTATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR-3UTR CAA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGAGAAGTAAAACCTCTTaGCAGGTCACTCTTTCTTTC | + |
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Preference number: 3 (lower is better) Translates to: RIQISQPLSQLKVQQPARRSKTS*QVTLSF Trigger: GAAAGAAAGAGTGACCTGCAAAGAGGTTTTACTTCT...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR TCA 72 bp | TTTCTTTCAATAGGTTTACTAGAAGTGTCAAGCAAATaGTCCTGTGAGTACTCACACACAGGGATCTCACCA | + |
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Preference number: 3 (lower is better) Translates to: FLSIGLLEVSSK*SCEYSHTGISP Trigger: TGGTGAGATCCCTGTGTGTGAGTACTCACAGGATCATTTGCTTGACACTTCTAGTAAACCTATTGAAAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| 3UTR GCA 72 bp | AACCTAGCAGTCAATCCTAAAGAAGTAAAACCTCTTTaGAGGTCACTCTTTCTTTCAATAGGTTTACTAGAA | + |
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Preference number: 3 (lower is better) Translates to: NLAVNPKEVKPL*RSLFLSIGLLE Trigger: TTCTAGTAAACCTATTGAAAGAAAGAGTGACCTGCAAAGAGGTTTTACTTCTTTAGGATTGACTGCTAGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | CTACACAGGTCCTTAAGAGGCATTCTGGGGGCCAAGGATGTCTCAGTTGGTAGACTACTACGTTATTGGTaGAGAGTGAGCGCAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LHRSLRGILGAKDVSVGRLLRYW*RVSAGG Trigger: ACCCCCTGCGCTCACTCTTCACCAATAACGTAGTAG...TCTACCAACTGAGACATCCTTGGCCCCCAGAATGCCTCTTAAGGACCTGTGTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGGGTCAGCTGGGGCACTaGGCCCAGGAAGGCTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: RIQISQPLSQLKVQQPARGQLGH*AQEGLN Trigger: ATTCAAGCCTTCCTGGGCTCAGTGCCCCAGCTGACC...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR GCA 90 bp | CTACACAGGTCCTTAAGAGGCATTCTGGGGGCCAAGGATGTCTCAGTTGGTAGAAACAAGGTCTCTGTCTaGCAACTTCAACTGCATGGC | + |
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Preference number: 4 (lower is better) Translates to: LHRSLRGILGAKDVSVGRNKVSV*QLQLHG Trigger: GCCATGCAGTTGAAGTTGGCAGACAGAGACCTTGTT...TCTACCAACTGAGACATCCTTGGCCCCCAGAATGCCTCTTAAGGACCTGTGTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | ACAGTTAAAAGTACAACAGCCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCTCCCAACTTCAACTGCATaGCTGACCAGCAAGAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: TVKSTTASQAVVAHAFNLPTSTA*LTSKRS Trigger: ACTTCTCTTGCTGGTCAGCCATGCAGTTGAAGTTGG...GAGATTAAAGGCATGCGCCACCACCGCCTGGCTGGCTGTTGTACTTTTAACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | ACTTTCTGGAAGGCGCTCATTCTTAGTAAGCCATCACATTCCCTGATCAGTACATCACGAGGCGGGAAGTaGTCTCCAATGTCCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: TFWKALILSKPSHSLISTSRGGK*SPMSSR Trigger: TCTGGAGGACATTGGAGATCACTTCCCGCCTCGTGA...TGTACTGATCAGGGAATGTGATGGCTTACTAAGAATGAGCGCCTTCCAGAAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | ACACACAGGGATCTCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCACACTCCTCCAGAACTTaGCCCAGGGCTCAAAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: THRDLTNSFNFTVACVNPHSSRT*PRAQRG Trigger: TCCTCTTTGAGCCCTGGGTCAAGTTCTGGAGGAGTG...TGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGAGATCCCTGTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | ACAGTTAAAAGTACAACAGCCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCTCGGAAGAAGAGAAGCATaGCCCCAATGGAAATCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: TVKSTTASQAVVAHAFNLGRREA*PQWKSD Trigger: ATCTGATTTCCATTGGGGTCATGCTTCTCTTCTTCC...GAGATTAAAGGCATGCGCCACCACCGCCTGGCTGGCTGTTGTACTTTTAACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | ACAGTTAAAAGTACAACAGCCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCTCCTTCCAGAGATGAAATaGGAACCACATTTGGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: TVKSTTASQAVVAHAFNLLPEMK*EPHLAP Trigger: AGGAGCCAAATGTGGTTCCCATTTCATCTCTGGAAG...GAGATTAAAGGCATGCGCCACCACCGCCTGGCTGGCTGTTGTACTTTTAACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | GCCTTTAATCTCAGCACTTGGGAGGAAGAGGAAGGTGGATTTCTGAGTTTGAGGAGGGGGTGCAAGTACTaGAAGAAGAGAAGCATGACC | + |
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Preference number: 4 (lower is better) Translates to: AFNLSTWEEEEGGFLSLRRGCKY*KKRSMT Trigger: GGTCATGCTTCTCTTCTTCCAGTACTTGCACCCCCT...CCTCAAACTCAGAAATCCACCTTCCTCTTCCTCCCAAGTGCTGAGATTAAAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR GCA 90 bp | TCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCAGACCCATCCTATATTTCCGGACGGGGTCTaGGGCAGCAGATACAATGGA | + |
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Preference number: 4 (lower is better) Translates to: SPTPSISQLLVLTQTHPIFPDGV*GSRYNG Trigger: TCCATTGTATCTGCTGCCGCAGACCCCGTCCGGAAA...TATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | GCCTTTAATCTCAGCACTTGGGAGGAAGAGGAAGGTGGATTTCTGAGTTTGAGGTCTATCAGCACCTCCTaGCCAGCTATTAGCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: AFNLSTWEEEEGGFLSLRSISTS*PAISIF Trigger: GAAGATGCTAATAGCTGGCCAGGAGGTGCTGATAGA...CCTCAAACTCAGAAATCCACCTTCCTCTTCCTCCCAAGTGCTGAGATTAAAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR GCA 90 bp | ACACACAGGGATCTCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCATCTGCCAACTTCAACTaGATGGCTGACCAGCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: THRDLTNSFNFTVACVNPSANFN*MADQQE Trigger: CTCTTGCTGGTCAGCCATGCAGTTGAAGTTGGCAGA...TGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGAGATCCCTGTGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | ACACACAGGGATCTCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCACCTTCAACTTCAAGGTaGCCGAGAAGAGCACCAGAA | + |
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Preference number: 4 (lower is better) Translates to: THRDLTNSFNFTVACVNPPSTSR*PRRAPE Trigger: TTCTGGTGCTCTTCTCGGCCACCTTGAAGTTGAAGG...TGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGAGATCCCTGTGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | GCCTTTAATCTCAGCACTTGGGAGGAAGAGGAAGGTGGATTTCTGAGTTTGAGGATCTTCTTCCAGAGATaGAATGGGAACCACATTTGG | + |
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Preference number: 4 (lower is better) Translates to: AFNLSTWEEEEGGFLSLRIFFQR*NGNHIW Trigger: CCAAATGTGGTTCCCATTTCATCTCTGGAAGAAGAT...CCTCAAACTCAGAAATCCACCTTCCTCTTCCTCCCAAGTGCTGAGATTAAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | TCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCAGACCCATCCTATAGAGCCCAGGAAGGCTTaGATCTGTGACATACGTTTG | + |
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Preference number: 4 (lower is better) Translates to: SPTPSISQLLVLTQTHPIEPRKA*ICDIRL Trigger: CAAACGTATGTCACAGATTCAAGCCTTCCTGGGCTC...TATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | ACAGTTAAAAGTACAACAGCCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCTCTCATCATACTTGATCTaGATAGCCAACATATTGCAC | + |
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Preference number: 4 (lower is better) Translates to: TVKSTTASQAVVAHAFNLSSYLI*IANILH Trigger: GTGCAATATGTTGGCTATCCAGATCAAGTATGATGA...GAGATTAAAGGCATGCGCCACCACCGCCTGGCTGGCTGTTGTACTTTTAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | TCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCAGACCCATCCTATACAGCATAGAGAATGGTaGCCGAAATCAGTACCACCA | + |
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Preference number: 4 (lower is better) Translates to: SPTPSISQLLVLTQTHPIQHREW*PKSVPP Trigger: TGGTGGTACTGATTTCGGTCACCATTCTCTATGCTG...TATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | TCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCAGACCCATCCTATACTTCAACTGCATGGCTaGCCAGCAAGAGAAGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: SPTPSISQLLVLTQTHPILQLHG*PAREVD Trigger: ATCAACTTCTCTTGCTGGTCAGCCATGCAGTTGAAG...TATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGATATGTCCCCAGTTCTaGCCTTTGTCAACAAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: RIQISQPLSQLKVQQPARICPQF*PLSTRS Trigger: AGACCTTGTTGACAAAGGTCAGAACTGGGGACATAT...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGATAGTGGTCTATCTTTaGCCAGGTCTCTGTGGACAA | + |
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Preference number: 4 (lower is better) Translates to: RIQISQPLSQLKVQQPARIVVYL*PGLCGQ Trigger: TTGTCCACAGAGACCTGGCCAAAGATAGACCACTAT...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | GCCTTTAATCTCAGCACTTGGGAGGAAGAGGAAGGTGGATTTCTGAGTTTGAGGTTTCTCAATATTGTTTaGCATTTGGGCACCACTCCT | + |
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Preference number: 4 (lower is better) Translates to: AFNLSTWEEEEGGFLSLRFLNIV*HLGTTP Trigger: AGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAA...CCTCAAACTCAGAAATCCACCTTCCTCTTCCTCCCAAGTGCTGAGATTAAAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGGAAGGCTTGAATCTGTaGCATACGTTTGTAGGCATT | + |
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Preference number: 4 (lower is better) Translates to: RIQISQPLSQLKVQQPAREGLNL*HTFVGI Trigger: AATGCCTACAAACGTATGTCACAGATTCAAGCCTTC...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | ACTTTCTGGAAGGCGCTCATTCTTAGTAAGCCATCACATTCCCTGATCAGTACAGAGTGCCAACTCGGCTaGAGTTTTTCTCAATATTGT | + |
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Preference number: 4 (lower is better) Translates to: TFWKALILSKPSHSLISTECQLG*SFSQYC Trigger: ACAATATTGAGAAAAACTTCAGCCGAGTTGGCACTC...TGTACTGATCAGGGAATGTGATGGCTTACTAAGAATGAGCGCCTTCCAGAAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | TCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCAGACCCATCCTATAACAAAGGACTTCCAGTaGCCCCAGTCTAATCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: SPTPSISQLLVLTQTHPITKDFQ*PQSNLV Trigger: TACAAGATTAGACTGGGGCCACTGGAAGTCCTTTGT...TATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR TCA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGAAAATGAGGGTCAACTaGACCATGATAGATGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: RIQISQPLSQLKVQQPARKMRVN*TMIDEN Trigger: GTTTTCATCTATCATGGTTCAGTTGACCCTCATTTT...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CCA 90 bp | TCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCAGACCCATCCTATAAATGGGAACCACATTTaGCTCCTCAGGAATTTCATA | + |
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Preference number: 4 (lower is better) Translates to: SPTPSISQLLVLTQTHPINGNHI*LLRNFI Trigger: TATGAAATTCCTGAGGAGCCAAATGTGGTTCCCATT...TATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR GCA 90 bp | AGAATACAAATATCCCAGCCACTCTCACAGTTAAAAGTACAACAGCCAGCCAGGCCCAAGAGGATTAGATaGATAAATAATGATAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: RIQISQPLSQLKVQQPARPKRIR*INNDSG Trigger: ACCACTATCATTATTTATGCATCTAATCCTCTTGGG...CCTGGCTGGCTGTTGTACTTTTAACTGTGAGAGTGGCTGGGATATTTGTATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS TCA 90 bp | GCAGCAGATACAATGGAGGTAGTCTACTACGTTATTGGTGAAGAGTaGGCGCAGGGGGTGCAAGTACTGGAAGAAGAGAAGCATGACCCC | + |
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Preference number: 5 (lower is better) Translates to: AADTMEVVYYVIGEE*AQGVQVLEEEKHDP Trigger: GGGGTCATGCTTCTCTTCTTCCAGTACTTGCACCCCCTGCGCTCACTCTTCACCAATAACGTAGTAGACTACCTCCATTGTATCTGCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS TCA 90 bp | GTCTGCGGCAGCAGATACAATGGAGGTAGTCTACTACGTTATTGGTaGAGAGTGAGCGCAGGGGGTGCAAGTACTGGAAGAAGAGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: VCGSRYNGGSLLRYW*RVSAGGASTGRREA Trigger: TGCTTCTCTTCTTCCAGTACTTGCACCCCCTGCGCTCACTCTTCACCAATAACGTAGTAGACTACCTCCATTGTATCTGCTGCCGCAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CAA 90 bp | ACAGTTAAAAGTACAACAGCCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCTCGATAGTGGTCTATCTTaGGCCAGGTCTCTGTGGACA | + |
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Preference number: 5 (lower is better) Translates to: TVKSTTASQAVVAHAFNLDSGLS*ARSLWT Trigger: TGTCCACAGAGACCTGGCCAAAGATAGACCACTATC...GAGATTAAAGGCATGCGCCACCACCGCCTGGCTGGCTGTTGTACTTTTAACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CCA 90 bp | AGAGTGCCAACTCGGCTGAAGTTTTTCTCAATATTGTTTGGCATTTaGGCACCACTCCTCCAGAACTTGACCCAGGGCTCAAAGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: RVPTRLKFFSILFGI*APLLQNLTQGSKRM Trigger: CATCCTCTTTGAGCCCTGGGTCAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAAACTTCAGCCGAGTTGGCACTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CAA 90 bp | TCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCAGACCCATCCTATACCACTCCTCCAGAACTaGACCCAGGGCTCAAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: SPTPSISQLLVLTQTHPIPLLQN*TQGSKR Trigger: CCTCTTTGAGCCCTGGGTCAAGTTCTGGAGGAGTGG...TATAGGATGGGTCTGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CAA 90 bp | CTACACAGGTCCTTAAGAGGCATTCTGGGGGCCAAGGATGTCTCAGTTGGTAGAAATATTGTTTGGCATTaGGGCACCACTCCTCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: LHRSLRGILGAKDVSVGRNIVWH*GTTPPE Trigger: TTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATT...TCTACCAACTGAGACATCCTTGGCCCCCAGAATGCCTCTTAAGGACCTGTGTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS TCA 90 bp | GGTAAAGCGTGGGTTAGGCCCCCGGATGACATCTTCTTCCAGAGATaGAATGGGAACCACATTTGGCTCCTCAGGAATTTCATAAACTCT | + |
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Preference number: 5 (lower is better) Translates to: GKAWVRPPDDIFFQR*NGNHIWLLRNFINS Trigger: AGAGTTTATGAAATTCCTGAGGAGCCAAATGTGGTTCCCATTTCATCTCTGGAAGAAGATGTCATCCGGGGGCCTAACCCACGCTTTACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CAA 90 bp | CTACACAGGTCCTTAAGAGGCATTCTGGGGGCCAAGGATGTCTCAGTTGGTAGAAAATGGGAACCACATTaGGCTCCTCAGGAATTTCAT | + |
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Preference number: 5 (lower is better) Translates to: LHRSLRGILGAKDVSVGRKWEPH*APQEFH Trigger: ATGAAATTCCTGAGGAGCCAAATGTGGTTCCCATTT...TCTACCAACTGAGACATCCTTGGCCCCCAGAATGCCTCTTAAGGACCTGTGTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CCA 90 bp | AGTGATCTCCAATGTCCTCCAGACGGTGATACAAAGGACTTCCAGTaGCCCCAGTCTAATCTTGTAGTCATCATACTTGATCTGGATAGC | + |
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Preference number: 5 (lower is better) Translates to: SDLQCPPDGDTKDFQ*PQSNLVVIILDLDS Trigger: GCTATCCAGATCAAGTATGATGACTACAAGATTAGACTGGGGCCACTGGAAGTCCTTTGTATCACCGTCTGGAGGACATTGGAGATCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS GCA 90 bp | ATCATGGCCTCCAAACATCTGATAACAGGTCCCAAGAGGATTAGATaGATAAATAATGATAGTGGTCTATCTTTGGCCAGGTCTCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: IMASKHLITGPKRIR*INNDSGLSLARSLW Trigger: CCACAGAGACCTGGCCAAAGATAGACCACTATCATTATTTATGCATCTAATCCTCTTGGGACCTGTTATCAGATGTTTGGAGGCCATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS-3UTR CAA 90 bp | ACACACAGGGATCTCACCAACTCCTTCAATTTCACAGTTGCTTGTGTTAACCCATTTTCTCAATATTGTTaGGCATTTGGGCACCACTCC | + |
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Preference number: 5 (lower is better) Translates to: THRDLTNSFNFTVACVNPFSQYC*AFGHHS Trigger: GGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAA...TGGGTTAACACAAGCAACTGTGAAATTGAAGGAGTTGGTGAGATCCCTGTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CCA 72 bp | ATGGAGTGGCCCACCTCCCATTCTATCAGCACCTCCTaGCCAGCTATTAGCATCTTCTTTCGGGTGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: MEWPTSHSISTS*PAISIFFRVRL Trigger: CAGCCTCACCCGAAAGAAGATGCTAATAGCTGGCCAGGAGGTGCTGATAGAATGGGAGGTGGGCCACTCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS GCA 72 bp | ATGTCTCTGAGTTCTCAACCCTTTCCGGACGGGGTCTaGGGCAGCAGATACAATGGAGGTAGTCTACTACGT | + |
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Preference number: 6 (lower is better) Translates to: MSLSSQPFPDGV*GSRYNGGSLLR Trigger: ACGTAGTAGACTACCTCCATTGTATCTGCTGCCGCAGACCCCGTCCGGAAAGGGTTGAGAACTCAGAGACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CCA 72 bp | GGTGGAGAAGAGGATACTAAACGGGAAGGTAAAGCGTaGGTTAGGCCCCCGGATGACATCTTCTTCCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: GGEEDTKREGKA*VRPPDDIFFQR Trigger: TCTCTGGAAGAAGATGTCATCCGGGGGCCTAACCCACGCTTTACCTTCCCGTTTAGTATCCTCTTCTCCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS TCA 72 bp | AATACTTTGTGTTGTGTCAGCTTCACAGGATGTCTCTaGGTTCTCAACCCTTTCCGGACGGGGTCTGCGGCA | + |
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Preference number: 6 (lower is better) Translates to: NTLCCVSFTGCL*VLNPFRTGSAA Trigger: TGCCGCAGACCCCGTCCGGAAAGGGTTGAGAACTCAGAGACATCCTGTGAAGCTGACACAACACAAAGTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CAA 90 bp | ATCAGTACCACCAGAGTGCCAACTCGGCTGAAGTTTTTCTCAATATaGTTTGGCATTTGGGCACCACTCCTCCAGAACTTGACCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: ISTTRVPTRLKFFSI*FGIWAPLLQNLTQG Trigger: GCCCTGGGTCAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAAACTTCAGCCGAGTTGGCACTCTGGTGGTACTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS TCA 72 bp | TGGGTTAGGCCCCCGGATGACATCTTCTTCCAGAGATaGAATGGGAACCACATTTGGCTCCTCAGGAATTTC | + |
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Preference number: 6 (lower is better) Translates to: WVRPPDDIFFQR*NGNHIWLLRNF Trigger: GAAATTCCTGAGGAGCCAAATGTGGTTCCCATTTCATCTCTGGAAGAAGATGTCATCCGGGGGCCTAACCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CAA 90 bp | CAGAGTGCCAACTCGGCTGAAGTTTTTCTCAATATTGTTTGGCATTaGGGCACCACTCCTCCAGAACTTGACCCAGGGCTCAAAGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: QSANSAEVFLNIVWH*GTTPPELDPGLKED Trigger: ATCCTCTTTGAGCCCTGGGTCAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAAACTTCAGCCGAGTTGGCACTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS TCA 72 bp | AGCAGATACAATGGAGGTAGTCTACTACGTTATTGGTaGAGAGTGAGCGCAGGGGGTGCAAGTACTGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: SRYNGGSLLRYW*RVSAGGASTGR Trigger: TCTTCCAGTACTTGCACCCCCTGCGCTCACTCTTCACCAATAACGTAGTAGACTACCTCCATTGTATCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CCA 72 bp | ACTCGGCTGAAGTTTTTCTCAATATTGTTTGGCATTTaGGCACCACTCCTCCAGAACTTGACCCAGGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: TRLKFFSILFGI*APLLQNLTQGS Trigger: TGAGCCCTGGGTCAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAAACTTCAGCCGAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CCA 72 bp | TTATTGGTGAAGAGTGAGCGCAGGGGGTGCAAGTACTaGAAGAAGAGAAGCATGACCCCAATGGAAATCAGA | + |
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Preference number: 6 (lower is better) Translates to: LLVKSERRGCKY*KKRSMTPMEIR Trigger: TCTGATTTCCATTGGGGTCATGCTTCTCTTCTTCCAGTACTTGCACCCCCTGCGCTCACTCTTCACCAATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CAA 72 bp | AACTCGGCTGAAGTTTTTCTCAATATTGTTTGGCATTaGGGCACCACTCCTCCAGAACTTGACCCAGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: NSAEVFLNIVWH*GTTPPELDPGL Trigger: GAGCCCTGGGTCAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAAACTTCAGCCGAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CAA 72 bp | ATATTGTTTGGCATTTGGGCACCACTCCTCCAGAACTaGACCCAGGGCTCAAAGAGGATGATCAAGAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: ILFGIWAPLLQN*TQGSKRMIKKL Trigger: CAACTTCTTGATCATCCTCTTTGAGCCCTGGGTCAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CAA 72 bp | ACCAGAGTGCCAACTCGGCTGAAGTTTTTCTCAATATaGTTTGGCATTTGGGCACCACTCCTCCAGAACTTG | + |
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Preference number: 6 (lower is better) Translates to: TRVPTRLKFFSI*FGIWAPLLQNL Trigger: CAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAAACTTCAGCCGAGTTGGCACTCTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CCA 72 bp | CAATGTCCTCCAGACGGTGATACAAAGGACTTCCAGTaGCCCCAGTCTAATCTTGTAGTCATCATACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: QCPPDGDTKDFQ*PQSNLVVIILD Trigger: ATCAAGTATGATGACTACAAGATTAGACTGGGGCCACTGGAAGTCCTTTGTATCACCGTCTGGAGGACATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CAA 90 bp | TTTTTCTCAATATTGTTTGGCATTTGGGCACCACTCCTCCAGAACTaGACCCAGGGCTCAAAGAGGATGATCAAGAAGTTGAGCACTAAG | + |
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Preference number: 6 (lower is better) Translates to: FFSILFGIWAPLLQN*TQGSKRMIKKLSTK Trigger: CTTAGTGCTCAACTTCTTGATCATCCTCTTTGAGCCCTGGGTCAAGTTCTGGAGGAGTGGTGCCCAAATGCCAAACAATATTGAGAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS GCA 72 bp | TCCAAACATCTGATAACAGGTCCCAAGAGGATTAGATaGATAAATAATGATAGTGGTCTATCTTTGGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SKHLITGPKRIR*INNDSGLSLAR Trigger: CCTGGCCAAAGATAGACCACTATCATTATTTATGCATCTAATCCTCTTGGGACCTGTTATCAGATGTTTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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| CDS CAA 72 bp | AGGATTAGATGCATAAATAATGATAGTGGTCTATCTTaGGCCAGGTCTCTGTGGACAAAAATGAGGGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: RIRCINNDSGLS*ARSLWTKMRVN Trigger: GTTGACCCTCATTTTTGTCCACAGAGACCTGGCCAAAGATAGACCACTATCATTATTTATGCATCTAATCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033611.5 |
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