Pregenerated sensors for XCL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026573Ensembl transcript IDs: ENSMUST00000027860.8
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 72 bp | AGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTaGTTAACGAGTGAGGAAACATTGTCCTGGAGGCTG | + |
Preference number: 3 (lower is better) Translates to: SICAMGLGTEMS*LTSEETLSWRL Trigger: CAGCCTCCAGGACAATGTTTCCTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR TCA 90 bp | ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGCCACAACCCATGGGGTaGGGCAGCAGACTCCCAGGA | + |
Preference number: 4 (lower is better) Translates to: ISICAMGLGTEMSCLTSEPQPMG*GSRLPG Trigger: TCCTGGGAGTCTGCTGCCTCACCCCATGGGTTGTGG...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR CCA 90 bp | ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGGTGCTGGTGGACCTCTaGGCTCCTGTGGGAACAGTT | + |
Preference number: 4 (lower is better) Translates to: IKISICAMGLGTEMSCLTVLVDL*APVGTV Trigger: AACTGTTCCCACAGGAGCCCAGAGGTCCACCAGCAC...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR CCA 90 bp | ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGTTATCGCTGTGCTGGTaGACCTCTGGGCTCCTGTGG | + |
Preference number: 4 (lower is better) Translates to: IKISICAMGLGTEMSCLTLSLCW*TSGLLW Trigger: CCACAGGAGCCCAGAGGTCCACCAGCACAGCGATAA...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR GCA 90 bp | ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGCACAGTCTTGATCGCTaGTTTCACCCATTTGGCTTC | + |
Preference number: 4 (lower is better) Translates to: ISICAMGLGTEMSCLTSEHSLDR*FHPFGF Trigger: GAAGCCAAATGGGTGAAAGCAGCGATCAAGACTGTG...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR CCA 90 bp | ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGCTGCTTTCACCCATTTaGCTTCTGGATCAGCACAAA | + |
Preference number: 4 (lower is better) Translates to: ISICAMGLGTEMSCLTSELLSPI*LLDQHK Trigger: TTTGTGCTGATCCAGAAGCCAAATGGGTGAAAGCAG...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR CCA 90 bp | ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGACCTCTGGGCTCCTGTaGGAACAGTTTCAGCCATGT | + |
Preference number: 4 (lower is better) Translates to: IKISICAMGLGTEMSCLTTSGLL*EQFQPC Trigger: ACATGGCTGAAACTGTTCCCACAGGAGCCCAGAGGT...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR TCA 90 bp | ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGTTAGTCCTCGTTTGGTaGCAAAAATTACAGCTCTCA | + |
Preference number: 4 (lower is better) Translates to: IKISICAMGLGTEMSCLTLVLVW*QKLQLS Trigger: TGAGAGCTGTAATTTTTGTCACCAAACGAGGACTAA...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS CCA 90 bp | ACCCAGTCAGGGTTATCGCTGTGCTGGTGGACCTCTGGGCTCCTGTaGGAACAGTTTCAGCCATGTTCTTTCTGGTACTGGCCCTGCCAT | + |
Preference number: 5 (lower is better) Translates to: TQSGLSLCWWTSGLL*EQFQPCSFWYWPCH Trigger: ATGGCAGGGCCAGTACCAGAAAGAACATGGCTGAAACTGTTCCCACAGGAGCCCAGAGGTCCACCAGCACAGCGATAACCCTGACTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS-3UTR CAA 90 bp | ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGGCTGCTTTCACCCATTaGGCTTCTGGATCAGCACAA | + |
Preference number: 5 (lower is better) Translates to: ISICAMGLGTEMSCLTSEAAFTH*ASGSAQ Trigger: TTGTGCTGATCCAGAAGCCAAATGGGTGAAAGCAGC...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS TCA 72 bp | GGACTTCAGTCCCCACACCTTCCACAACCCATGGGGTaGGGCAGCAGACTCCCAGGAAAGTCAGGAGGAGAA | + |
Preference number: 6 (lower is better) Translates to: GLQSPHLPQPMG*GSRLPGKSGGE Trigger: TTCTCCTCCTGACTTTCCTGGGAGTCTGCTGCCTCACCCCATGGGTTGTGGAAGGTGTGGGGACTGAAGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS CCA 72 bp | GGGTTATCGCTGTGCTGGTGGACCTCTGGGCTCCTGTaGGAACAGTTTCAGCCATGTTCTTTCTGGTACTGG | + |
Preference number: 6 (lower is better) Translates to: GLSLCWWTSGLL*EQFQPCSFWYW Trigger: CCAGTACCAGAAAGAACATGGCTGAAACTGTTCCCACAGGAGCCCAGAGGTCCACCAGCACAGCGATAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS TCA 72 bp | TGTTCTTTCTGGTACTGGCCCTGCCATCCACAGTCTTaGTCGCTGCTTTCACCCATTTGGCTTCTGGATCAG | + |
Preference number: 6 (lower is better) Translates to: CSFWYWPCHPQS*SLLSPIWLLDQ Trigger: CTGATCCAGAAGCCAAATGGGTGAAAGCAGCGATCAAGACTGTGGATGGCAGGGCCAGTACCAGAAAGAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |
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CDS CAA 72 bp | ATGTTCTTTCTGGTACTGGCCCTGCCATCCACAGTCTaGATCGCTGCTTTCACCCATTTGGCTTCTGGATCA | + |
Preference number: 6 (lower is better) Translates to: MFFLVLALPSTV*IAAFTHLASGS Trigger: TGATCCAGAAGCCAAATGGGTGAAAGCAGCGATCAAGACTGTGGATGGCAGGGCCAGTACCAGAAAGAACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027860.8 |