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Pregenerated sensors for XCL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026573

Ensembl transcript IDs: ENSMUST00000027860.8

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp AGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTaGTTAACGAGTGAGGAAACATTGTCCTGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: SICAMGLGTEMS*LTSEETLSWRL
Trigger: CAGCCTCCAGGACAATGTTTCCTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR TCA 90 bp ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGCCACAACCCATGGGGTaGGGCAGCAGACTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: ISICAMGLGTEMSCLTSEPQPMG*GSRLPG
Trigger: TCCTGGGAGTCTGCTGCCTCACCCCATGGGTTGTGG...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR CCA 90 bp ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGGTGCTGGTGGACCTCTaGGCTCCTGTGGGAACAGTT +
Preference number: 4 (lower is better)
Translates to: IKISICAMGLGTEMSCLTVLVDL*APVGTV
Trigger: AACTGTTCCCACAGGAGCCCAGAGGTCCACCAGCAC...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR CCA 90 bp ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGTTATCGCTGTGCTGGTaGACCTCTGGGCTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: IKISICAMGLGTEMSCLTLSLCW*TSGLLW
Trigger: CCACAGGAGCCCAGAGGTCCACCAGCACAGCGATAA...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR GCA 90 bp ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGCACAGTCTTGATCGCTaGTTTCACCCATTTGGCTTC +
Preference number: 4 (lower is better)
Translates to: ISICAMGLGTEMSCLTSEHSLDR*FHPFGF
Trigger: GAAGCCAAATGGGTGAAAGCAGCGATCAAGACTGTG...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR CCA 90 bp ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGCTGCTTTCACCCATTTaGCTTCTGGATCAGCACAAA +
Preference number: 4 (lower is better)
Translates to: ISICAMGLGTEMSCLTSELLSPI*LLDQHK
Trigger: TTTGTGCTGATCCAGAAGCCAAATGGGTGAAAGCAG...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR CCA 90 bp ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGACCTCTGGGCTCCTGTaGGAACAGTTTCAGCCATGT +
Preference number: 4 (lower is better)
Translates to: IKISICAMGLGTEMSCLTTSGLL*EQFQPC
Trigger: ACATGGCTGAAACTGTTCCCACAGGAGCCCAGAGGT...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR TCA 90 bp ATAAAAATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGTTAGTCCTCGTTTGGTaGCAAAAATTACAGCTCTCA +
Preference number: 4 (lower is better)
Translates to: IKISICAMGLGTEMSCLTLVLVW*QKLQLS
Trigger: TGAGAGCTGTAATTTTTGTCACCAAACGAGGACTAA...CGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTATTTTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS CCA 90 bp ACCCAGTCAGGGTTATCGCTGTGCTGGTGGACCTCTGGGCTCCTGTaGGAACAGTTTCAGCCATGTTCTTTCTGGTACTGGCCCTGCCAT +
Preference number: 5 (lower is better)
Translates to: TQSGLSLCWWTSGLL*EQFQPCSFWYWPCH
Trigger: ATGGCAGGGCCAGTACCAGAAAGAACATGGCTGAAACTGTTCCCACAGGAGCCCAGAGGTCCACCAGCACAGCGATAACCCTGACTGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS-3UTR CAA 90 bp ATAAGTATTTGTGCAATGGGTTTGGGAACTGAGATGAGCTGCTTAACGAGTGAGGCTGCTTTCACCCATTaGGCTTCTGGATCAGCACAA +
Preference number: 5 (lower is better)
Translates to: ISICAMGLGTEMSCLTSEAAFTH*ASGSAQ
Trigger: TTGTGCTGATCCAGAAGCCAAATGGGTGAAAGCAGC...CTCACTCGTTAAGCAGCTCATCTCAGTTCCCAAACCCATTGCACAAATACTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS TCA 72 bp GGACTTCAGTCCCCACACCTTCCACAACCCATGGGGTaGGGCAGCAGACTCCCAGGAAAGTCAGGAGGAGAA +
Preference number: 6 (lower is better)
Translates to: GLQSPHLPQPMG*GSRLPGKSGGE
Trigger: TTCTCCTCCTGACTTTCCTGGGAGTCTGCTGCCTCACCCCATGGGTTGTGGAAGGTGTGGGGACTGAAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS CCA 72 bp GGGTTATCGCTGTGCTGGTGGACCTCTGGGCTCCTGTaGGAACAGTTTCAGCCATGTTCTTTCTGGTACTGG +
Preference number: 6 (lower is better)
Translates to: GLSLCWWTSGLL*EQFQPCSFWYW
Trigger: CCAGTACCAGAAAGAACATGGCTGAAACTGTTCCCACAGGAGCCCAGAGGTCCACCAGCACAGCGATAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS TCA 72 bp TGTTCTTTCTGGTACTGGCCCTGCCATCCACAGTCTTaGTCGCTGCTTTCACCCATTTGGCTTCTGGATCAG +
Preference number: 6 (lower is better)
Translates to: CSFWYWPCHPQS*SLLSPIWLLDQ
Trigger: CTGATCCAGAAGCCAAATGGGTGAAAGCAGCGATCAAGACTGTGGATGGCAGGGCCAGTACCAGAAAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8
CDS CAA 72 bp ATGTTCTTTCTGGTACTGGCCCTGCCATCCACAGTCTaGATCGCTGCTTTCACCCATTTGGCTTCTGGATCA +
Preference number: 6 (lower is better)
Translates to: MFFLVLALPSTV*IAAFTHLASGS
Trigger: TGATCCAGAAGCCAAATGGGTGAAAGCAGCGATCAAGACTGTGGATGGCAGGGCCAGTACCAGAAAGAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027860.8