Pregenerated sensors for XBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020484Ensembl transcript IDs: ENSMUST00000063084.16, ENSMUST00000149159.3, ENSMUST00000149623.8, ENSMUST00000239150.2
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCTTACACTCTCAGATCACAGGACCCAGCCATCCACCAGACTTATaGTCTCAGATCATAGGACCCACCCACGGAACAGTTTCCCCCTAC | + |
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Preference number: 1 (lower is better) Translates to: GLHSQITGPSHPPDL*SQIIGPTHGTVSPY Trigger: GTAGGGGGAAACTGTTCCGTGGGTGGGTCCTATGATCTGAGAGCATAAGTCTGGTGGATGGCTGGGTCCTGTGATCTGAGAGTGTAAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| 3UTR-3UTR GCA 90 bp | GGTGCACACCTGGTGAAGCCCAGCACTTGGGAGGTGGGGTCAAGAGGGTCAGAAAAAGAGACAGGCCTATaGTATCCTCTAGGCAATGTG | + |
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Preference number: 2 (lower is better) Translates to: GAHLVKPSTWEVGSRGSEKETGL*YPLGNV Trigger: CACATTGCCTAGAGGATAGCATAGGCCTGTCTCTTT...TTCTGACCCTCTTGACCCCACCTCCCAAGTGCTGGGCTTCACCAGGTGTGCACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR-3UTR CCA 90 bp | AAAGAAATGCTAAGGGCCATTCATGAATCCCATGTCCACCTGACATGTCGGGGGGTGAAGCCCAGCACTTaGGAGGTGGGGTCAAGAGGG | + |
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Preference number: 2 (lower is better) Translates to: KEMLRAIHESHVHLTCRGVKPST*EVGSRG Trigger: CCCTCTTGACCCCACCTCCCAAGTGCTGGGCTTCAC...CCCCCGACATGTCAGGTGGACATGGGATTCATGAATGGCCCTTAGCATTTCTTT 54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR-3UTR TCA 90 bp | GGTGCACACCTGGTGAAGCCCAGCACTTGGGAGGTGGGGTCAAGAGGGTCAGAATCTTCACTGAGACAATaGATTCAGGGTGATCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: GAHLVKPSTWEVGSRGSESSLRQ*IQGDPL Trigger: AAGAGGATCACCCTGAATTCATTGTCTCAGTGAAGA...TTCTGACCCTCTTGACCCCACCTCCCAAGTGCTGGGCTTCACCAGGTGTGCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR-3UTR CCA 90 bp | GGGAAGCAGAGAGTGGAGAAAGAAATGCTAAGGGCCATTCATGAATCCCATGTCCCAGCACTTGGGAGGTaGGGTCAAGAGGGTCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: GKQRVEKEMLRAIHESHVPALGR*GQEGQK Trigger: CTTCTGACCCTCTTGACCCCACCTCCCAAGTGCTGG...GACATGGGATTCATGAATGGCCCTTAGCATTTCTTTCTCCACTCTCTGCTTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR-3UTR CCA 90 bp | AGGCAATGTGATGGTCAGGGAAAGGGGCCCAGTGTTATGTGGCTCTTTAGACACGGTGGTCTCAGACAATaGCTGGATGAAAGCAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: RQCDGQGKGPSVMWLFRHGGLRQ*LDESRF Trigger: AAACCTGCTTTCATCCAGCCATTGTCTGAGACCACC...GTGTCTAAAGAGCCACATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR-3UTR TCA 90 bp | GACTCTCTGTCTCAGAGGGGATCTCTAAAACTAGAGGCTTGGTGTATACATGGTTGCCCAGCTCTGGGATaGAGTCATCTTCCAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: DSLSQRGSLKLEAWCIHGCPALG*SHLPKA Trigger: AGCCTTTGGAAGATGACTTCATCCCAGAGCTGGGCA...ACCATGTATACACCAAGCCTCTAGTTTTAGAGATCCCCTCTGAGACAGAGAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| 3UTR-3UTR CCA 90 bp | CCTATGCTATCCTCTAGGCAATGTGATGGTCAGGGAAAGGGGCCCAGTGTTATGGTGGTCTGTACCAAGTaGAGAAGACATGTCACTGAA | + |
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Preference number: 2 (lower is better) Translates to: PMLSSRQCDGQGKGPSVMVVCTK*RRHVTE Trigger: TTCAGTGACATGTCTTCTCCACTTGGTACAGACCAC...CATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCTAGAGGATAGCATAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR-3UTR TCA 90 bp | TTTGAATACCTTAGACAGCTGAGTGTCAAACGACAATACTTGGAAGTCATCTATTGCCCAGCTCTGGGATaGAGTCATCTTCCAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: FEYLRQLSVKRQYLEVIYCPALG*SHLPKA Trigger: AGCCTTTGGAAGATGACTTCATCCCAGAGCTGGGCA...ATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGCTGTCTAAGGTATTCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR-3UTR TCA 90 bp | TACAAGAGGCAAAACACAAAAGAGTTCACTATTAGAATGAATGTGACAGTCTACTCTTCACTGAGACAATaGATTCAGGGTGATCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: YKRQNTKEFTIRMNVTVYSSLRQ*IQGDPL Trigger: AAGAGGATCACCCTGAATTCATTGTCTCAGTGAAGA...GTAGACTGTCACATTCATTCTAATAGTGAACTCTTTTGTGTTTTGCCTCTTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| 3UTR-3UTR CCA 90 bp | TTTGAATACCTTAGACAGCTGAGTGTCAAACGACAATACTTGGAAGTCATCTATAGACAGCCTCTACTTTaGCTTTTAACGAAAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: FEYLRQLSVKRQYLEVIYRQPLL*LLTKET Trigger: TGTCTCTTTCGTTAAAAGCCAAAGTAGAGGCTGTCT...ATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGCTGTCTAAGGTATTCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR CCA 72 bp | AGGTGTGGAGGTGCACACCTGGTGAAGCCCAGCACTTaGGAGGTGGGGTCAAGAGGGTCAGAAGTTTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: RCGGAHLVKPST*EVGSRGSEVSA Trigger: GGCAGAAACTTCTGACCCTCTTGACCCCACCTCCCAAGTGCTGGGCTTCACCAGGTGTGCACCTCCACACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR CCA 72 bp | CGTCCAGCAGGCAAGAAGGTGGTCTCAGACAATGGCTaGATGAAAGCAGGTTTGAGATGCCCAGCTCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: RPAGKKVVSDNG*MKAGLRCPALG Trigger: TCCCAGAGCTGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCTGAGACCACCTTCTTGCCTGCTGGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR GCA 72 bp | TCTCAGATCACAGGACCCAGCCATCCACCAGACTTATaGTCTCAGATCATAGGACCCACCCACGGAACAGTT | + |
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Preference number: 3 (lower is better) Translates to: SQITGPSHPPDL*SQIIGPTHGTV Trigger: AACTGTTCCGTGGGTGGGTCCTATGATCTGAGAGCATAAGTCTGGTGGATGGCTGGGTCCTGTGATCTGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| 3UTR-3UTR CAA 90 bp | GGGATCTCTAAAACTAGAGGCTTGGTGTATACATGGTCAAAACGAATGAGTTCATTAATGGCTTCCAGCTaGGCTGATGAGGTCCCCACT | + |
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Preference number: 3 (lower is better) Translates to: GISKTRGLVYTWSKRMSSLMASS*ADEVPT Trigger: AGTGGGGACCTCATCAGCCAAGCTGGAAGCCATTAA...TGAACTCATTCGTTTTGACCATGTATACACCAAGCCTCTAGTTTTAGAGATCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| 3UTR-3UTR CAA 90 bp | TTTGAATACCTTAGACAGCTGAGTGTCAAACGACAATACTTGGAAGTCATCTATCAGACAGCCTCTACTTaGGCTTTTAACGAAAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: FEYLRQLSVKRQYLEVIYQTAST*AFNERD Trigger: GTCTCTTTCGTTAAAAGCCAAAGTAGAGGCTGTCTG...ATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGCTGTCTAAGGTATTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| 3UTR TCA 72 bp | GCTGAGTGTCAAACGACAATACTTGGAAGTCATCTATaGGATTTGAAATACTTTAGAGGAATTCTTCTAAGG | + |
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Preference number: 3 (lower is better) Translates to: AECQTTILGSHL*DLKYFRGILLR Trigger: CCTTAGAAGAATTCCTCTAAAGTATTTCAAATCTCATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR TCA 90 bp | TGGCAAAAGTATCCTCCCAGGAGTGGTCTGTACCAAGTGGAGAAGACATGTCACCCGGGCTCAGGTGCGTaGGCCGCTGCCGCTTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: WQKYPPRSGLYQVEKTCHPGSGA*AAAACE Trigger: CTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGG...GTGACATGTCTTCTCCACTTGGTACAGACCACTCCTGGGAGGATACTTTTGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | AGACAATGGCTGGATGAAAGCAGGTTTGAGATGCCCAGCTCTGGGATGAAGTCACGCCTCCGACCCTGCTaGCCGCGGACCGGGTACCAT | + |
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Preference number: 4 (lower is better) Translates to: RQWLDESRFEMPSSGMKSRLRPC*PRTGYH Trigger: ATGGTACCCGGTCCGCGGGCAGCAGGGTCGGAGGCG...TGACTTCATCCCAGAGCTGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | CAAGAAGGTGGTCTCAGACAATGGCTGGATGAAAGCAGGTTTGAGATGCCCAGCAGGTGCGTGAGCCGCTaGCGCTTGCGAGCCTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: QEGGLRQWLDESRFEMPSRCVSR*RLRACG Trigger: ACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCT...GCTGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCTGAGACCACCTTCTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | CTATCCTCTAGGCAATGTGATGGTCAGGGAAAGGGGCCCAGTGTTATGTGGCTCGGTGACAACTGGGCCTaGACCTGCTGCAGAGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: LSSRQCDGQGKGPSVMWLGDNWA*TCCRGA Trigger: TGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACC...GAGCCACATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCTAGAGGATAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR CCA 90 bp | CCTATGCTATCCTCTAGGCAATGTGATGGTCAGGGAAAGGGGCCCAGTGTTATGATAAGAGTAGCACTTTaGGGGCCGCCGTGGCCGCGC | + |
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Preference number: 4 (lower is better) Translates to: PMLSSRQCDGQGKGPSVMIRVAL*GPPWPR Trigger: GCGCGGCCACGGCGGCCCCCAAAGTGCTACTCTTAT...CATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCTAGAGGATAGCATAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR CCA 90 bp | CTATCCTCTAGGCAATGTGATGGTCAGGGAAAGGGGCCCAGTGTTATGTGGCTCTGGGGAGGTGACAACTaGGCCTGCACCTGCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LSSRQCDGQGKGPSVMWLWGGDN*ACTCCR Trigger: TCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCA...GAGCCACATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCTAGAGGATAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR CCA 90 bp | TGCACACCTGGTGAAGCCCAGCACTTGGGAGGTGGGGTCAAGAGGGTCAGAAGTTTCTGGGTAGACCTCTaGGAGTTCCTCCAGACTAGC | + |
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Preference number: 4 (lower is better) Translates to: CTPGEAQHLGGGVKRVRSFWVDL*EFLQTS Trigger: GCTAGTCTGGAGGAACTCCCAGAGGTCTACCCAGAA...ACTTCTGACCCTCTTGACCCCACCTCCCAAGTGCTGGGCTTCACCAGGTGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | CTAACCCCACCAATACTAACTTCTCCGTTTGCCTGGCTAAGCGTGTCACACGCCTGGGCCTGCACCTGCTaGAGAGGTGCACATAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LTPPILTSPFAWLSVSHAWACTC*RGAHSL Trigger: CAGACTATGTGCACCTCTGCAGCAGGTGCAGGCCCA...GGCGTGTGACACGCTTAGCCAGGCAAACGGAGAAGTTAGTATTGGTGGGGTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR CCA 90 bp | CTATCCTCTAGGCAATGTGATGGTCAGGGAAAGGGGCCCAGTGTTATGTGGCTCCATGGGAAGATGTTCTaGGGAGGTGACAACTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LSSRQCDGQGKGPSVMWLHGKMF*GGDNWA Trigger: GGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATG...GAGCCACATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCTAGAGGATAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR TCA 90 bp | GTTCCACAATGTTACTTAGGGCTTACACTCTCAGATCACAGGACCCAGCCATCCGAGGTGCACATAGTCTaGGTGCTGCGGACTCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VPQCYLGLTLSDHRTQPSEVHIV*VLRTQQ Trigger: CTGCTGAGTCCGCAGCACTCAGACTATGTGCACCTC...GGATGGCTGGGTCCTGTGATCTGAGAGTGTAAGCCCTAAGTAACATTGTGGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR CCA 90 bp | AGACAATGGCTGGATGAAAGCAGGTTTGAGATGCCCAGCTCTGGGATGAAGTCACATGGGAAGATGTTCTaGGGAGGTGACAACTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: RQWLDESRFEMPSSGMKSHGKMF*GGDNWA Trigger: GGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATG...TGACTTCATCCCAGAGCTGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 |
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| CDS-3UTR CCA 90 bp | GGCAAGAAGGTGGTCTCAGACAATGGCTGGATGAAAGCAGGTTTGAGATGCCCACAGTGTCAGAGTCCATaGGAAGATGTTCTGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GKKVVSDNGWMKAGLRCPQCQSP*EDVLGR Trigger: CCTCCCCAGAACATCTTCCCATGGACTCTGACACTG...TGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCTGAGACCACCTTCTTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 |
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| CDS-3UTR CCA 90 bp | AGGCAATGTGATGGTCAGGGAAAGGGGCCCAGTGTTATGTGGCTCTTTAGACACCGTGTTCTTAACTCCTaGTTCTCAACCACAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: RQCDGQGKGPSVMWLFRHRVLNS*FSTTRP Trigger: CGGCCTTGTGGTTGAGAACCAGGAGTTAAGAACACG...GTGTCTAAAGAGCCACATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR CCA 90 bp | GGGAAGCAGAGAGTGGAGAAAGAAATGCTAAGGGCCATTCATGAATCCCATGTCCAGTGTCAGAGTCCATaGGAAGATGTTCTGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GKQRVEKEMLRAIHESHVQCQSP*EDVLGR Trigger: CCTCCCCAGAACATCTTCCCATGGACTCTGACACTG...GACATGGGATTCATGAATGGCCCTTAGCATTTCTTTCTCCACTCTCTGCTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | GGGATCTCTAAAACTAGAGGCTTGGTGTATACATGGTCAAAACGAATGAGTTCAGGTGACAACTGGGCCTaGACCTGCTGCAGAGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: GISKTRGLVYTWSKRMSSGDNWA*TCCRGA Trigger: TGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACC...TGAACTCATTCGTTTTGACCATGTATACACCAAGCCTCTAGTTTTAGAGATCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR TCA 90 bp | CTGTCAAATGACCCTCCCTGCGATTTAGAGTATACTACCACCTTTAAGATAAACGAGGTGCACATAGTCTaGGTGCTGCGGACTCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LSNDPPCDLEYTTTFKINEVHIV*VLRTQQ Trigger: CTGCTGAGTCCGCAGCACTCAGACTATGTGCACCTC...GTTTATCTTAAAGGTGGTAGTATACTCTAAATCGCAGGGAGGGTCATTTGACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR TCA 90 bp | CTACCAGAAATACTTTTAGTACTGGGTTCCACAATGTTACTTAGGGCTTACACTGATGTTCTGGGGAGGTaGCAACTGGGCCTGCACCTG | + |
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Preference number: 4 (lower is better) Translates to: LPEILLVLGSTMLLRAYTDVLGR*QLGLHL Trigger: CAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATC...AGTGTAAGCCCTAAGTAACATTGTGGAACCCAGTACTAAAAGTATTTCTGGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR CCA 90 bp | CTACCAGAAATACTTTTAGTACTGGGTTCCACAATGTTACTTAGGGCTTACACTTGGGGAGGTGACAACTaGGCCTGCACCTGCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LPEILLVLGSTMLLRAYTWGGDN*ACTCCR Trigger: TCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCA...AGTGTAAGCCCTAAGTAACATTGTGGAACCCAGTACTAAAAGTATTTCTGGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR TCA 90 bp | TTTGAATACCTTAGACAGCTGAGTGTCAAACGACAATACTTGGAAGTCATCTATGATGTTCTGGGGAGGTaGCAACTGGGCCTGCACCTG | + |
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Preference number: 4 (lower is better) Translates to: FEYLRQLSVKRQYLEVIYDVLGR*QLGLHL Trigger: CAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATC...ATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGCTGTCTAAGGTATTCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR CCA 90 bp | AGACAATGGCTGGATGAAAGCAGGTTTGAGATGCCCAGCTCTGGGATGAAGTCATCTAGCTGGAGTTTGTaGTTCTCTTCTTCCAAATCC | + |
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Preference number: 4 (lower is better) Translates to: RQWLDESRFEMPSSGMKSSSWSL*FSSSKS Trigger: GGATTTGGAAGAAGAGAACCACAAACTCCAGCTAGA...TGACTTCATCCCAGAGCTGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 |
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| CDS-3UTR CCA 90 bp | AAAGTGCTTAATCCTAACCCCACCAATACTAACTTCTCCGTTTGCCTGGCTAAGCGTGTTCTTAACTCCTaGTTCTCAACCACAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: KVLNPNPTNTNFSVCLAKRVLNS*FSTTRP Trigger: CGGCCTTGTGGTTGAGAACCAGGAGTTAAGAACACG...CTTAGCCAGGCAAACGGAGAAGTTAGTATTGGTGGGGTTAGGATTAAGCACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR CCA 90 bp | GGCAAGAAGGTGGTCTCAGACAATGGCTGGATGAAAGCAGGTTTGAGATGCCCAGGCTTGGTGTATACATaGTCAAAACGAATGAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: GKKVVSDNGWMKAGLRCPGLVYT*SKRMSS Trigger: TGAACTCATTCGTTTTGACCATGTATACACCAAGCC...TGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCTGAGACCACCTTCTTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | TTTGAATACCTTAGACAGCTGAGTGTCAAACGACAATACTTGGAAGTCATCTATTGGGCCTGCACCTGCTaGAGAGGTGCACATAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: FEYLRQLSVKRQYLEVIYWACTC*RGAHSL Trigger: CAGACTATGTGCACCTCTGCAGCAGGTGCAGGCCCA...ATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGCTGTCTAAGGTATTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | CTGTCAAATGACCCTCCCTGCGATTTAGAGTATACTACCACCTTTAAGATAAACCTATCTCGAGCAGTCTaGGCTGCTACTCTGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LSNDPPCDLEYTTTFKINLSRAV*AATLFF Trigger: GAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAG...GTTTATCTTAAAGGTGGTAGTATACTCTAAATCGCAGGGAGGGTCATTTGACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR CCA 90 bp | ACTAGGAAAGTGCTTAATCCTAACCCCACCAATACTAACTTCTCCGTTTGCCTGTCTAGCTGGAGTTTGTaGTTCTCTTCTTCCAAATCC | + |
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Preference number: 4 (lower is better) Translates to: TRKVLNPNPTNTNFSVCLSSWSL*FSSSKS Trigger: GGATTTGGAAGAAGAGAACCACAAACTCCAGCTAGA...CAGGCAAACGGAGAAGTTAGTATTGGTGGGGTTAGGATTAAGCACTTTCCTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR GCA 90 bp | CTGTCAAATGACCCTCCCTGCGATTTAGAGTATACTACCACCTTTAAGATAAACTCGAGCAGTCTGCGCTaGTACTCTGTTTTTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: LSNDPPCDLEYTTTFKINSSSLR*YSVFQF Trigger: AAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGA...GTTTATCTTAAAGGTGGTAGTATACTCTAAATCGCAGGGAGGGTCATTTGACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS-3UTR GCA 90 bp | CTACCAGAAATACTTTTAGTACTGGGTTCCACAATGTTACTTAGGGCTTACACTTCGAGCAGTCTGCGCTaGTACTCTGTTTTTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: LPEILLVLGSTMLLRAYTSSSLR*YSVFQF Trigger: AAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGA...AGTGTAAGCCCTAAGTAACATTGTGGAACCCAGTACTAAAAGTATTTCTGGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR TCA 90 bp | TTTGAATACCTTAGACAGCTGAGTGTCAAACGACAATACTTGGAAGTCATCTATATCAGACTCAGAATCTaGAGAGGCAACAGTGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: FEYLRQLSVKRQYLEVIYIRLRI*RGNSVR Trigger: TCTGACACTGTTGCCTCTTCAGATTCTGAGTCTGAT...ATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGCTGTCTAAGGTATTCAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS GCA 90 bp | TTCTCCTCCGGGCTCAGGTGCGTGAGCCGCTGCCGCTTGCGAGCCTaGGGTGTCCCGCTCGCCTCCGACCCTGCTGCCCGCGGACCGGGT | + |
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Preference number: 5 (lower is better) Translates to: FSSGLRCVSRCRLRA*GVPLASDPAARGPG Trigger: ACCCGGTCCGCGGGCAGCAGGGTCGGAGGCGAGCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 90 bp | TTCCTCCGCAGCGCTTTCTCCTCCGGGCTCAGGTGCGTGAGCCGCTaGCGCTTGCGAGCCTGCGGTGTCCCGCTCGCCTCCGACCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: FLRSAFSSGLRCVSR*RLRACGVPLASDPA Trigger: AGCAGGGTCGGAGGCGAGCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAAAGCGCTGCGGAGGAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS TCA 90 bp | TTTTCAGTTTCCTCCGCAGCGCTTTCTCCTCCGGGCTCAGGTGCGTaGGCCGCTGCCGCTTGCGAGCCTGCGGTGTCCCGCTCGCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: FSVSSAALSPPGSGA*AAAACEPAVSRSPP Trigger: CGGAGGCGAGCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAAAGCGCTGCGGAGGAAACTGAAAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 90 bp | GTCCATGGGAAGATGTTCTGGGGAGGTGACAACTGGGCCTGCACCTaGTGCAGAGGTGCCAGACCCGGCCACCAGCCTTACTCCACTCCC | + |
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Preference number: 5 (lower is better) Translates to: VHGKMFWGGDNWACT*CRGARPGHQPYSTP Trigger: GGGAGTGGAGTAAGGCTGGTGGCCGGGTCTGGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATGGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS CCA 90 bp | CTGCAGAGGTGCCAGACCCGGCCACCAGCCTTACTCCACTCCCCTTaGCCTCCACCTCTGGAACCTCGTCAGGATCCAGCGTGTCCATTC | + |
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Preference number: 5 (lower is better) Translates to: LQRCQTRPPALLHSP*PPPLEPRQDPACPF Trigger: GAATGGACACGCTGGATCCTGACGAGGTTCCAGAGGTGGAGGCCAAGGGGAGTGGAGTAAGGCTGGTGGCCGGGTCTGGCACCTCTGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS GCA 90 bp | CATGGGAAGATGTTCTGGGGAGGTGACAACTGGGCCTGCACCTGCTaGAGAGGTGCCAGACCCGGCCACCAGCCTTACTCCACTCCCCTT | + |
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Preference number: 5 (lower is better) Translates to: HGKMFWGGDNWACTC*RGARPGHQPYSTPL Trigger: AAGGGGAGTGGAGTAAGGCTGGTGGCCGGGTCTGGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS GCA 90 bp | GTCAGAGTCCATGGGAAGATGTTCTGGGGAGGTGACAACTGGGCCTaGACCTGCTGCAGAGGTGCCAGACCCGGCCACCAGCCTTACTCC | + |
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Preference number: 5 (lower is better) Translates to: VRVHGKMFWGGDNWA*TCCRGARPGHQPYS Trigger: GGAGTAAGGCTGGTGGCCGGGTCTGGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATGGACTCTGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS CCA 90 bp | AACAGTGTCAGAGTCCATGGGAAGATGTTCTGGGGAGGTGACAACTaGGCCTGCACCTGCTGCAGAGGTGCCAGACCCGGCCACCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: NSVRVHGKMFWGGDN*ACTCCRGARPGHQP Trigger: AGGCTGGTGGCCGGGTCTGGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATGGACTCTGACACTGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS TCA 90 bp | AAGAGGCAACAGTGTCAGAGTCCATGGGAAGATGTTCTGGGGAGGTaGCAACTGGGCCTGCACCTGCTGCAGAGGTGCCAGACCCGGCCA | + |
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Preference number: 5 (lower is better) Translates to: KRQQCQSPWEDVLGR*QLGLHLLQRCQTRP Trigger: TGGCCGGGTCTGGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATGGACTCTGACACTGTTGCCTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS GCA 90 bp | CATGGGAAGATGTTCTGGGGAGGTGACAACTGGGCCTGCACCTGCTaGAGAGGTGCACATAGTCTGAGTGCTGCGGACTCAGCAGACCCG | + |
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Preference number: 5 (lower is better) Translates to: HGKMFWGGDNWACTC*RGAHSLSAADSADP Trigger: CGGGTCTGCTGAGTCCGCAGCACTCAGACTATGTGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 |
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| CDS GCA 90 bp | GTCAGAGTCCATGGGAAGATGTTCTGGGGAGGTGACAACTGGGCCTaGACCTGCTGCAGAGGTGCACATAGTCTGAGTGCTGCGGACTCA | + |
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Preference number: 5 (lower is better) Translates to: VRVHGKMFWGGDNWA*TCCRGAHSLSAADS Trigger: TGAGTCCGCAGCACTCAGACTATGTGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATGGACTCTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 |
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| CDS GCA 90 bp | CAGCTCGCTCATCCGGGCTTTCTTTCTATCTCGAGCAGTCTGCGCTaGTACTCTGTTTTTCAGTTTCCTCCGCAGCGCTTTCTCCTCCGG | + |
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Preference number: 5 (lower is better) Translates to: QLAHPGFLSISSSLR*YSVFQFPPQRFLLR Trigger: CCGGAGGAGAAAGCGCTGCGGAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATGAGCGAGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 90 bp | TGCTCCAGCTCGCTCATCCGGGCTTTCTTTCTATCTCGAGCAGTCTaGGCTGCTACTCTGTTTTTCAGTTTCCTCCGCAGCGCTTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: CSSSLIRAFFLSRAV*AATLFFSFLRSAFS Trigger: GGAGAAAGCGCTGCGGAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATGAGCGAGCTGGAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 90 bp | TGCTCCAGCTCGCTCATCCGGGCTTTCTTTCTATCTCGAGCAGTCTaGGCTGCTACTCTGTTTTTCAGTTTCCTTGGGGAGGAGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: CSSSLIRAFFLSRAV*AATLFFSFLGEETG Trigger: CCCTGTCTCCTCCCCAAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATGAGCGAGCTGGAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149623.8 |
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| CDS GCA 90 bp | CAGCTCGCTCATCCGGGCTTTCTTTCTATCTCGAGCAGTCTGCGCTaGTACTCTGTTTTTCAGTTTCCTTGGGGAGGAGACAGGGAACAT | + |
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Preference number: 5 (lower is better) Translates to: QLAHPGFLSISSSLR*YSVFQFPWGGDREH Trigger: ATGTTCCCTGTCTCCTCCCCAAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATGAGCGAGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149623.8 |
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| CDS-3UTR CAA 90 bp | CAAGAAGGTGGTCTCAGACAATGGCTGGATGAAAGCAGGTTTGAGATGCCCAGCTTAATGGCTTCCAGCTaGGCTGATGAGGTCCCCACT | + |
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Preference number: 5 (lower is better) Translates to: QEGGLRQWLDESRFEMPSLMASS*ADEVPT Trigger: AGTGGGGACCTCATCAGCCAAGCTGGAAGCCATTAA...GCTGGGCATCTCAAACCTGCTTTCATCCAGCCATTGTCTGAGACCACCTTCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS GCA 90 bp | TCTAGCTGGAGTTTGTGGTTCTCTTCTTCCAAATCCACCACTTGCTaGTCCAGCTCGCTCATCCGGGCTTTCTTTCTATCTCGAGCAGTC | + |
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Preference number: 5 (lower is better) Translates to: SSWSLWFSSSKSTTC*SSSLIRAFFLSRAV Trigger: GACTGCTCGAGATAGAAAGAAAGCCCGGATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAAGAAGAGAACCACAAACTCCAGCTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 ENSMUST00000239150.2 |
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| CDS-3UTR CAA 90 bp | ACAATGTTACTTAGGGCTTACACTCTCAGATCACAGGACCCAGCCATCCACCAGTTCCAAATCCACCACTaGCTGCTCCAGCTCGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: TMLLRAYTLRSQDPAIHQFQIHH*LLQLAH Trigger: ATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAA...CTGGTGGATGGCTGGGTCCTGTGATCTGAGAGTGTAAGCCCTAAGTAACATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149159.3 |
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| CDS-3UTR CAA 90 bp | GGGAAGCAGAGAGTGGAGAAAGAAATGCTAAGGGCCATTCATGAATCCCATGTCTTCCAAATCCACCACTaGCTGCTCCAGCTCGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: GKQRVEKEMLRAIHESHVFQIHH*LLQLAH Trigger: ATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAA...GACATGGGATTCATGAATGGCCCTTAGCATTTCTTTCTCCACTCTCTGCTTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063084.16 |
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| CDS GCA 90 bp | TTTTCTAGCTGGAGTTTGTGGTTCTCTTCTTCCAAATCCACCACTTaGTGCTCCAGCTCGCTCATCCGGGCTTTCTTTCTATCTCGAGCA | + |
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Preference number: 5 (lower is better) Translates to: FSSWSLWFSSSKSTT*CSSSLIRAFFLSRA Trigger: TGCTCGAGATAGAAAGAAAGCCCGGATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAAGAAGAGAACCACAAACTCCAGCTAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 ENSMUST00000239150.2 |
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| CDS GCA 72 bp | GGGCTCAGGTGCGTGAGCCGCTGCCGCTTGCGAGCCTaGGGTGTCCCGCTCGCCTCCGACCCTGCTGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: GLRCVSRCRLRA*GVPLASDPAAR Trigger: GCGGGCAGCAGGGTCGGAGGCGAGCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS CCA 72 bp | CGCCGGAGGCGGGCTGGCCAGATAAGAGTAGCACTTTaGGGGCCGCCGTGGCCGCGCTCGGCGCCGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: RRRRAGQIRVAL*GPPWPRSAPLP Trigger: TGGCAGCGGCGCCGAGCGCGGCCACGGCGGCCCCCAAAGTGCTACTCTTATCTGGCCAGCCCGCCTCCGGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS CAA 90 bp | CGCAGCGCTTTCTCCTCCGGGCTCAGGTGCGTGAGCCGCTGCCGCTaGCGAGCCTGCGGTGTCCCGCTCGCCTCCGACCCTGCTGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: RSAFSSGLRCVSRCR*RACGVPLASDPAAR Trigger: GCGGGCAGCAGGGTCGGAGGCGAGCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAAAGCGCTGCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS TCA 72 bp | TCCTCCGCAGCGCTTTCTCCTCCGGGCTCAGGTGCGTaGGCCGCTGCCGCTTGCGAGCCTGCGGTGTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: SSAALSPPGSGA*AAAACEPAVSR Trigger: GCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAAAGCGCTGCGGAGGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 72 bp | AGCGCTTTCTCCTCCGGGCTCAGGTGCGTGAGCCGCTaGCGCTTGCGAGCCTGCGGTGTCCCGCTCGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SAFSSGLRCVSR*RLRACGVPLAS Trigger: GGAGGCGAGCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAAAGCGCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS CAA 72 bp | TTCTCCTCCGGGCTCAGGTGCGTGAGCCGCTGCCGCTaGCGAGCCTGCGGTGTCCCGCTCGCCTCCGACCCT | + |
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Preference number: 6 (lower is better) Translates to: FSSGLRCVSRCR*RACGVPLASDP Trigger: AGGGTCGGAGGCGAGCGGGACACCGCAGGCTCGCAAGCGGCAGCGGCTCACGCACCTGAGCCCGGAGGAGAA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 72 bp | CATGGGAAGATGTTCTGGGGAGGTGACAACTGGGCCTaGACCTGCTGCAGAGGTGCCAGACCCGGCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: HGKMFWGGDNWA*TCCRGARPGHQ Trigger: CTGGTGGCCGGGTCTGGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS CAA 90 bp | GCTGCGGACTCAGCAGACCCGGCCACCAGCCTTACTCCACTCCCCTaGGCCTCCACCTCTGGAACCTCGTCAGGATCCAGCGTGTCCATT | + |
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Preference number: 6 (lower is better) Translates to: AADSADPATSLTPLP*ASTSGTSSGSSVSI Trigger: AATGGACACGCTGGATCCTGACGAGGTTCCAGAGGTGGAGGCCAAGGGGAGTGGAGTAAGGCTGGTGGCCGGGTCTGCTGAGTCCGCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 |
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| CDS CAA 90 bp | GCTGCAGAGGTGCCAGACCCGGCCACCAGCCTTACTCCACTCCCCTaGGCCTCCACCTCTGGAACCTCGTCAGGATCCAGCGTGTCCATT | + |
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Preference number: 6 (lower is better) Translates to: AAEVPDPATSLTPLP*ASTSGTSSGSSVSI Trigger: AATGGACACGCTGGATCCTGACGAGGTTCCAGAGGTGGAGGCCAAGGGGAGTGGAGTAAGGCTGGTGGCCGGGTCTGGCACCTCTGCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS TCA 72 bp | CAGTGTCAGAGTCCATGGGAAGATGTTCTGGGGAGGTaGCAACTGGGCCTGCACCTGCTGCAGAGGTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: QCQSPWEDVLGR*QLGLHLLQRCQ Trigger: CTGGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATGGACTCTGACACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239150.2 |
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| CDS GCA 72 bp | ATGTTCTGGGGAGGTGACAACTGGGCCTGCACCTGCTaGAGAGGTGCACATAGTCTGAGTGCTGCGGACTCA | + |
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Preference number: 6 (lower is better) Translates to: MFWGGDNWACTC*RGAHSLSAADS Trigger: TGAGTCCGCAGCACTCAGACTATGTGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 |
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| CDS GCA 72 bp | CATGGGAAGATGTTCTGGGGAGGTGACAACTGGGCCTaGACCTGCTGCAGAGGTGCACATAGTCTGAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: HGKMFWGGDNWA*TCCRGAHSLSA Trigger: AGCACTCAGACTATGTGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCTCCCCAGAACATCTTCCCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 |
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| CDS GCA 72 bp | TCGCTCATCCGGGCTTTCTTTCTATCTCGAGCAGTCTaGGCTGCTACTCTGTTTTTCAGTTTCCTCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SLIRAFFLSRAV*AATLFFSFLRS Trigger: GCTGCGGAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATGAGCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 72 bp | CATCCGGGCTTTCTTTCTATCTCGAGCAGTCTGCGCTaGTACTCTGTTTTTCAGTTTCCTCCGCAGCGCTTT | + |
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Preference number: 6 (lower is better) Translates to: HPGFLSISSSLR*YSVFQFPPQRF Trigger: AAAGCGCTGCGGAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063084.16 ENSMUST00000239150.2 |
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| CDS GCA 72 bp | CATCCGGGCTTTCTTTCTATCTCGAGCAGTCTGCGCTaGTACTCTGTTTTTCAGTTTCCTTGGGGAGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: HPGFLSISSSLR*YSVFQFPWGGD Trigger: GTCTCCTCCCCAAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149623.8 |
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| CDS GCA 72 bp | TCGCTCATCCGGGCTTTCTTTCTATCTCGAGCAGTCTaGGCTGCTACTCTGTTTTTCAGTTTCCTTGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: SLIRAFFLSRAV*AATLFFSFLGE Trigger: CTCCCCAAGGAAACTGAAAAACAGAGTAGCAGCGCAGACTGCTCGAGATAGAAAGAAAGCCCGGATGAGCGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149623.8 |
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| CDS CAA 72 bp | CTGGAGTTTGTGGTTCTCTTCTTCCAAATCCACCACTaGCTGCTCCAGCTCGCTCATCCGGGCTTTCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LEFVVLFFQIHH*LLQLAHPGFLS Trigger: AGAAAGAAAGCCCGGATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAAGAAGAGAACCACAAACTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 ENSMUST00000239150.2 |
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| CDS GCA 72 bp | TGGAGTTTGTGGTTCTCTTCTTCCAAATCCACCACTTaGTGCTCCAGCTCGCTCATCCGGGCTTTCTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: WSLWFSSSKSTT*CSSSLIRAFFL Trigger: TAGAAAGAAAGCCCGGATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAAGAAGAGAACCACAAACTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 ENSMUST00000239150.2 |
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| CDS GCA 72 bp | AGTTTGTGGTTCTCTTCTTCCAAATCCACCACTTGCTaGTCCAGCTCGCTCATCCGGGCTTTCTTTCTATCT | + |
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Preference number: 6 (lower is better) Translates to: SLWFSSSKSTTC*SSSLIRAFFLS Trigger: AGATAGAAAGAAAGCCCGGATGAGCGAGCTGGAGCAGCAAGTGGTGGATTTGGAAGAAGAGAACCACAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063084.16 ENSMUST00000149159.3 ENSMUST00000149623.8 ENSMUST00000239150.2 |
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