RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for XAF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040483

Ensembl transcript IDs: ENSMUST00000094041.4, ENSMUST00000140842.9, ENSMUST00000146233.8, ENSMUST00000151440.8

Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGAGCCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCT +
Preference number: 1 (lower is better)
Translates to: REPDLITDGCEPPCG*WDLNSGPSEEQSGA
Trigger: AGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGGCTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 90 bp GGGAACTGGGAAGCTAGTGGGATCTGGGAAGTTAGTGGGAACTGGTaGTCTTCAATCTTCGGAATCCAGCTGGCCATCCTCACTGGAGTT +
Preference number: 1 (lower is better)
Translates to: GNWEASGIWEVSGNW*SSIFGIQLAILTGV
Trigger: AACTCCAGTGAGGATGGCCAGCTGGATTCCGAAGATTGAAGAGCACCAGTTCCCACTAACTTCCCAGATCCCACTAGCTTCCCAGTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 90 bp AGTGGGAACTGGGAAGCTAGTGGGATCTGGGAAGTTAGTGGGAACTaGTGCTCTTCAATCTTCGGAATCCAGCTGGCCATCCTCACTGGA +
Preference number: 1 (lower is better)
Translates to: SGNWEASGIWEVSGN*CSSIFGIQLAILTG
Trigger: TCCAGTGAGGATGGCCAGCTGGATTCCGAAGATTGAAGAGCACCAGTTCCCACTAACTTCCCAGATCCCACTAGCTTCCCAGTTCCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 90 bp GGGTGGGGTACTATCAGATGCTCTTTTCTGGATTCCGCATGGCCATaGCTGTTGCAAACGGGCACACATCAGCTGTGGTTACTGTTGGCA +
Preference number: 1 (lower is better)
Translates to: GWGTIRCSFLDSAWP*LLQTGTHQLWLLLA
Trigger: TGCCAACAGTAACCACAGCTGATGTGTGCCCGTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCTGATAGTACCCCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 90 bp GTACTATCAGATGCTCTTTTCTGGATTCCGCATGGCCATGGCTGTTaGAAACGGGCACACATCAGCTGTGGTTACTGTTGGCATAAGACC +
Preference number: 1 (lower is better)
Translates to: VLSDALFWIPHGHGC*KRAHISCGYCWHKT
Trigger: GGTCTTATGCCAACAGTAACCACAGCTGATGTGTGCCCGTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCTGATAGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 90 bp CAGCACCCGCAAACATGGACTCAAGATGTGAAAGCAGAGAACTATTaGGAAGAAAAGAGGTTCATAGGAGTAGGTTGGGGCAACGGAAGG +
Preference number: 1 (lower is better)
Translates to: QHPQTWTQDVKAENY*EEKRFIGVGWGNGR
Trigger: CCTTCCGTTGCCCCAACCTACTCCTATGAACCTCTTTTCTTCCCAATAGTTCTCTGCTTTCACATCTTGAGTCCATGTTTGCGGGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 90 bp GTGAGCGGTTATAGCAAAGCGGGAGACCTTGCTATAGGCTCCAGATaGATATGTGATGACTTTCTTAGCAGTTGGGATCCACTCATATGT +
Preference number: 1 (lower is better)
Translates to: VSGYSKAGDLAIGSR*ICDDFLSSWDPLIC
Trigger: ACATATGAGTGGATCCCAACTGCTAAGAAAGTCATCACATATGCATCTGGAGCCTATAGCAAGGTCTCCCGCTTTGCTATAACCGCTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR TCA 90 bp TCTGTAGCTCAGAAGAAGGAAAAGACATCTTCTGAAGACCAAAGATaGAAGCCTGTCTCTTTTCTTGGTCACCCAAAGTGCCAAGAGCAC +
Preference number: 1 (lower is better)
Translates to: SVAQKKEKTSSEDQR*KPVSFLGHPKCQEH
Trigger: GTGCTCTTGGCACTTTGGGTGACCAAGAAAAGAGACAGGCTTTCATCTTTGGTCTTCAGAAGATGTCTTTTCCTTCTTCTGAGCTACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR TCA 90 bp AAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCTaGCAGTCCAGAAGAGGGAGCCAGATCTCATTACAGATGGTTGTG +
Preference number: 1 (lower is better)
Translates to: KIYLFIICKYTVAVF*QSRRGSQISLQMVV
Trigger: CACAACCATCTGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR CCA 90 bp GGGTACTATCAGATGCTCTTTTCTGGATTCCGCATGGCCATGGCTGTTGCAAACTCTTCGGAATCCAGCTaGCCATCCTCACTGGAGTTT +
Preference number: 2 (lower is better)
Translates to: GYYQMLFSGFRMAMAVANSSESS*PSSLEF
Trigger: AAACTCCAGTGAGGATGGCCAGCTGGATTCCGAAGA...GTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCTGATAGTACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CAA 90 bp ACAGCACCCGCAAACATGGACTCAAGATGTGAAAGCAGAGAACTATaGGGAAGAAAAGAGGTTCATAGGAGTAGGTTGGGGCAACGGAAG +
Preference number: 2 (lower is better)
Translates to: TAPANMDSRCESREL*GRKEVHRSRLGQRK
Trigger: CTTCCGTTGCCCCAACCTACTCCTATGAACCTCTTTTCTTCCCAATAGTTCTCTGCTTTCACATCTTGAGTCCATGTTTGCGGGTGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR GCA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGATGTGTGTGTGCGCGTaGACACACAGCACCCGCAAA +
Preference number: 2 (lower is better)
Translates to: KAKKKVREKLRIKQGFLEMCVCA*THSTRK
Trigger: TTTGCGGGTGCTGTGTGTGCACGCGCACACACACAT...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR CCA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCGAAGCTAGTGGGAACTaGGAAGCTAGTGGGATCTGG +
Preference number: 2 (lower is better)
Translates to: LGQRKAMGISMITIHCKLEASGN*EASGIW
Trigger: CCAGATCCCACTAGCTTCCCAGTTCCCACTAGCTTC...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR CCA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGGAAGCTAGTGGGATCTaGGAAGCTAGTGGGAACTGG +
Preference number: 2 (lower is better)
Translates to: KAKKKVREKLRIKQGFLEEASGI*EASGNW
Trigger: CCAGTTCCCACTAGCTTCCCAGATCCCACTAGCTTC...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR CCA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGAAAGCTAGTGGGAACTaGGAAGCTAGTGGGATCTGG +
Preference number: 2 (lower is better)
Translates to: KAKKKVREKLRIKQGFLEKASGN*EASGIW
Trigger: CCAGATCCCACTAGCTTCCCAGTTCCCACTAGCTTT...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR TCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGACTGTAGCTGTCTTCTaGCAGTCCAGAAGAGGGAGC +
Preference number: 2 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRTVAVF*QSRRGS
Trigger: GCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGT...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR TCA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGCATGGACTCAAGATGTaGAAGCAGAGAACTATTGGG +
Preference number: 2 (lower is better)
Translates to: KAKKKVREKLRIKQGFLEHGLKM*KQRTIG
Trigger: CCCAATAGTTCTCTGCTTTCACATCTTGAGTCCATG...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR GCA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGTGGGGTACTATCAGATaGTCTTTTCTGGATTCCGCA +
Preference number: 2 (lower is better)
Translates to: KAKKKVREKLRIKQGFLEWGTIR*SFLDSA
Trigger: TGCGGAATCCAGAAAAGAGCATCTGATAGTACCCCA...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR GCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGCTTGGTCACCCAAAGTaGCAAGAGCACTTTGAGACA +
Preference number: 2 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRLGHPK*QEHFET
Trigger: TGTCTCAAAGTGCTCTTGGCACTTTGGGTGACCAAG...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR TCA 90 bp GTCTTTGGACGAACATCTTTACTCACTGTGGATCTTCGATTTCCAGAGTCCATACAAGGGTTGAAGGAATaGCTATTATACTTTCATCCC +
Preference number: 2 (lower is better)
Translates to: VFGRTSLLTVDLRFPESIQGLKE*LLYFHP
Trigger: GGGATGAAAGTATAATAGTCATTCCTTCAACCCTTG...TATGGACTCTGGAAATCGAAGATCCACAGTGAGTAAAGATGTTCGTCCAAAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
3UTR-3UTR CCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGGGTCACACACAGATGTaGGCAAATGGCTTCTTTTTA +
Preference number: 2 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRGHTQM*ANGFFL
Trigger: TAAAAAGAAGCCATTTGCCCACATCTGTGTGTGACC...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR-3UTR TCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGAAGAAAACAAAGTTGTaGCCACTAGGAAAGGAAGCT +
Preference number: 2 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRKKTKL*PLGKEA
Trigger: AGCTTCCTTTCCTAGTGGTCACAACTTTGTTTTCTT...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTC +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVAGI*TPDLRKSSRVL
Trigger: GAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR TCA 72 bp CCAGAAGAGGGAGCCAGATCTCATTACAGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTCCGG +
Preference number: 3 (lower is better)
Translates to: PEEGARSHYRWL*ATMWLLGFELR
Trigger: CCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGGCTCCCTCTTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 72 bp GATGCTCTTTTCTGGATTCCGCATGGCCATGGCTGTTaGAAACGGGCACACATCAGCTGTGGTTACTGTTGG +
Preference number: 3 (lower is better)
Translates to: DALFWIPHGHGC*KRAHISCGYCW
Trigger: CCAACAGTAACCACAGCTGATGTGTGCCCGTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 72 bp CCAACCCAGCAGTTGAGCCTAGGTGCTCGAGTTCAGTaGAAGAAGCGAAAGCCTTTTCTCCAGGTCATCTGT +
Preference number: 3 (lower is better)
Translates to: PTQQLSLGARVQ*KKRKPFLQVIC
Trigger: ACAGATGACCTGGAGAAAAGGCTTTCGCTTCTTGCACTGAACTCGAGCACCTAGGCTCAACTGCTGGGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 72 bp CTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: LITDGCEPPCGC*DLNSGPSEEQS
Trigger: CGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 72 bp TGGGAAGCTAGTGGGATCTGGGAAGTTAGTGGGAACTaGTGCTCTTCAATCTTCGGAATCCAGCTGGCCATC +
Preference number: 3 (lower is better)
Translates to: WEASGIWEVSGN*CSSIFGIQLAI
Trigger: GATGGCCAGCTGGATTCCGAAGATTGAAGAGCACCAGTTCCCACTAACTTCCCAGATCCCACTAGCTTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 72 bp GATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCCGGACCTTCGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DLITDGCEPPCG*WDLNSGPSEEQ
Trigger: CTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 72 bp TGGGAAGCTAGTGGGAACTGGGAAGCTAGTGGGATCTaGGAAGTTAGTGGGAACTGGTGCTCTTCAATCTTC +
Preference number: 3 (lower is better)
Translates to: WEASGNWEASGI*EVSGNWCSSIF
Trigger: GAAGATTGAAGAGCACCAGTTCCCACTAACTTCCCAGATCCCACTAGCTTCCCAGTTCCCACTAGCTTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 72 bp ACTATCAGATGCTCTTTTCTGGATTCCGCATGGCCATaGCTGTTGCAAACGGGCACACATCAGCTGTGGTTA +
Preference number: 3 (lower is better)
Translates to: TIRCSFLDSAWP*LLQTGTHQLWL
Trigger: TAACCACAGCTGATGTGTGCCCGTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCTGATAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 72 bp TATAGCAAAGCGGGAGACCTTGCTATAGGCTCCAGATaGATATGTGATGACTTTCTTAGCAGTTGGGATCCA +
Preference number: 3 (lower is better)
Translates to: YSKAGDLAIGSR*ICDDFLSSWDP
Trigger: TGGATCCCAACTGCTAAGAAAGTCATCACATATGCATCTGGAGCCTATAGCAAGGTCTCCCGCTTTGCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR TCA 72 bp GTCATCTGTAGCTCAGAAGAAGGAAAAGACATCTTCTaGAGACCAAAGATGAAAGCCTGTCTCTTTTCTTGG +
Preference number: 3 (lower is better)
Translates to: VICSSEEGKDIF*RPKMKACLFSW
Trigger: CCAAGAAAAGAGACAGGCTTTCATCTTTGGTCTTCAGAAGATGTCTTTTCCTTCTTCTGAGCTACAGATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CCA 72 bp GGCTCCAGATGCATATGTGATGACTTTCTTAGCAGTTaGGATCCACTCATATGTTTCAAAACTTTACCTAGG +
Preference number: 3 (lower is better)
Translates to: GSRCICDDFLSS*DPLICFKTLPR
Trigger: CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATCACATATGCATCTGGAGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR TCA 72 bp GGATCTTCGATTTCCAGAGTCCATAAATGCAAGGGTTaGAGGAATGACTATTATACTTTCATCCCGAATACG +
Preference number: 3 (lower is better)
Translates to: GSSISRVHKCKG*RNDYYTFIPNT
Trigger: CGTATTCGGGATGAAAGTATAATAGTCATTCCTTCAACCCTTGCATTTATGGACTCTGGAAATCGAAGATCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
3UTR TCA 72 bp GGATGCAGAGATAAGTTTATTTTGGAGCCAAATGAGTaGCTGTGGTCCAGAAATACAGATTCAGTTTGCTTC +
Preference number: 3 (lower is better)
Translates to: GCRDKFILEPNE*LWSRNTDSVCF
Trigger: GAAGCAAACTGAATCTGTATTTCTGGACCACAGTCACTCATTTGGCTCCAAAATAAACTTATCTCTGCATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR TCA 72 bp TTATTTATTATATGTAAGTACACTGTAGCTGTCTTCTaGCAGTCCAGAAGAGGGAGCCAGATCTCATTACAG +
Preference number: 3 (lower is better)
Translates to: LFIICKYTVAVF*QSRRGSQISLQ
Trigger: CTGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTACTTACATATAATAAATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR GCA 72 bp TCCAGAAATACAGATTCAGTTTGCTTCAGATATCTGTaGTCTGACCTTGGTAACAATTTCTGTGAAGTTTTA +
Preference number: 3 (lower is better)
Translates to: SRNTDSVCFRYL*SDLGNNFCEVL
Trigger: TAAAACTTCACAGAAATTGTTACCAAGGTCAGAGCACAGATATCTGAAGCAAACTGAATCTGTATTTCTGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CAA 72 bp ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCT +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCWD*NSGPSEEQSGA
Trigger: AGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp GGGTACTATCAGATGCTCTTTTCTGGATTCCGCATGGCCATGGCTGTTGCAAACTCCCTTCCTCAGGCCTaGCCTTTGCACTCAGACACA +
Preference number: 4 (lower is better)
Translates to: GYYQMLFSGFRMAMAVANSLPQA*PLHSDT
Trigger: TGTGTCTGAGTGCAAAGGGCAGGCCTGAGGAAGGGA...GTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCTGATAGTACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp CGAATACGTGTCACAGTGTTTGGGGCGGAACATTGTTTCATATGGGAGGCATACATGAAGCGCAGGCAGTaGGCCTCGTGGAGCATGAAG +
Preference number: 4 (lower is better)
Translates to: RIRVTVFGAEHCFIWEAYMKRRQ*ASWSMK
Trigger: CTTCATGCTCCACGAGGCCCACTGCCTGCGCTTCAT...GTATGCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR CCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACAGTCCGGCTGCCACAGTaGGACTCATGGACATCCAGA +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITVRLPQ*DSWTSR
Trigger: TCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGAC...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACACCGTCTCGTCTCCTGTaGGAAGATCAGCCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITPSRLL*EDQPSA
Trigger: AGCAGAGGGCTGATCTTCCCACAGGAGACGAGACGG...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GAACTATTGGGAAGAAAAGAGGTTCATAGGAGTAGGTTGGGGCAACGGAAGGCATTGGCAGGGTGCTGTTaGCTTTCCTTGGTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: ELLGRKEVHRSRLGQRKALAGCC*LSLVCW
Trigger: CCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAA...TGCCTTCCGTTGCCCCAACCTACTCCTATGAACCTCTTTTCTTCCCAATAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CAA 72 bp AGATGCTCTTTTCTGGATTCCGCATGGCCATGGCTGTaGCAAACGGGCACACATCAGCTGTGGTTACTGTTG +
Preference number: 4 (lower is better)
Translates to: RCSFLDSAWPWL*QTGTHQLWLLL
Trigger: CAACAGTAACCACAGCTGATGTGTGCCCGTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR TCA 90 bp GTCTTTGGACGAACATCTTTACTCACTGTGGATCTTCGATTTCCAGAGTCCATAGGGCCTCGTGGAGCATaGAGTGGAGAGAGGCCACAT +
Preference number: 4 (lower is better)
Translates to: VFGRTSLLTVDLRFPESIGPRGA*SGERPH
Trigger: ATGTGGCCTCTCTCCACTTCATGCTCCACGAGGCCC...TATGGACTCTGGAAATCGAAGATCCACAGTGAGTAAAGATGTTCGTCCAAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR TCA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCGGGCCTCGTGGAGCATaGAGTGGAGAGAGGCCACAT +
Preference number: 4 (lower is better)
Translates to: LGQRKAMGISMITIHCKLGPRGA*SGERPH
Trigger: ATGTGGCCTCTCTCCACTTCATGCTCCACGAGGCCC...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR TCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACAACAGTACTTGGAGTGTaGTGGGCTGGTTGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITTVLGV*WAGCSV
Trigger: CACACTGCAACCAGCCCATCACACTCCAAGTACTGT...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACACCAGCTCACAGAACTTaGACTTGGCAGGGTGCTGTT +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITPAHRT*TWQGAV
Trigger: AACAGCACCCTGCCAAGTGCAAGTTCTGTGAGCTGG...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACACTCAGGCCTGCCCTTTaGACTCAGACACATGGCTTT +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITLRPAL*TQTHGF
Trigger: AAAGCCATGTGTCTGAGTGCAAAGGGCAGGCCTGAG...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp TCACAGTGTTTGGGGCGGAACATTGTTTCATATGGGAGGCATACGTATTTTCTGAGGCAGTGGGCCTCGTaGAGCATGAAGTGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: SQCLGRNIVSYGRHTYFLRQWAS*SMKWRE
Trigger: CTCTCTCCACTTCATGCTCCACGAGGCCCACTGCCT...CAGAAAATACGTATGCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR CCA 90 bp ATCCCGAATACGTGTCACAGTGTTTGGGGCGGAACATTGTTTCATATGGGAGGCGGGCTCTTCACATTCTaGGCAAAGGACTATGAAGCG +
Preference number: 4 (lower is better)
Translates to: IPNTCHSVWGGTLFHMGGGLFTF*AKDYEA
Trigger: CGCTTCATAGTCCTTTGCCCAGAATGTGAAGAGCCC...GCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
3UTR CAA 72 bp TCTCTTTTCTTGGTCACCCAAAGTGCCAAGAGCACTTaGAGACAGTTGAGTGACCCTGACCTGAGCCCAAGA +
Preference number: 4 (lower is better)
Translates to: SLFLVTQSAKST*RQLSDPDLSPR
Trigger: TCTTGGGCTCAGGTCAGGGTCACTCAACTGTCTCAAAGTGCTCTTGGCACTTTGGGTGACCAAGAAAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR TCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACACACATGGCTTTGTGCTaGGACAGTACTTGGAGTGTG +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITHMALC*DSTWSV
Trigger: CACACTCCAAGTACTGTCTCAGCACAAAGCCATGTG...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GAACTATTGGGAAGAAAAGAGGTTCATAGGAGTAGGTTGGGGCAACGGAAGGCAGGGCTCTTCACATTCTaGGCAAAGGACTATGAAGCG +
Preference number: 4 (lower is better)
Translates to: ELLGRKEVHRSRLGQRKAGLFTF*AKDYEA
Trigger: CGCTTCATAGTCCTTTGCCCAGAATGTGAAGAGCCC...TGCCTTCCGTTGCCCCAACCTACTCCTATGAACCTCTTTTCTTCCCAATAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GAACTATTGGGAAGAAAAGAGGTTCATAGGAGTAGGTTGGGGCAACGGAAGGCATCTTTGACTCTGGGATaGGCTCTTCACATTCTGGGC +
Preference number: 4 (lower is better)
Translates to: ELLGRKEVHRSRLGQRKASLTLG*ALHILG
Trigger: GCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGA...TGCCTTCCGTTGCCCCAACCTACTCCTATGAACCTCTTTTCTTCCCAATAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACACTCTGGCACTTCTCCTaGTGCTCATTTAGAATGGGC +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITLWHFS*CSFRMG
Trigger: GCCCATTCTAAATGAGCACCAGGAGAAGTGCCAGAG...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCAATGCTCTGTCCGGCTaGCACAGTGGGACTCATGGA +
Preference number: 4 (lower is better)
Translates to: LGQRKAMGISMITIHCKLNALSG*HSGTHG
Trigger: TCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATT...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACAAGGCCACATTTCTTTTaGAGTTCCTGCACACTTGGA +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITRPHFF*SSCTLG
Trigger: TCCAAGTGTGCAGGAACTGCAAAAGAAATGTGGCCT...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGAGGCAGTGGGCCTCGTaGAGCATGAAGTGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRRQWAS*SMKWRE
Trigger: CTCTCTCCACTTCATGCTCCACGAGGCCCACTGCCT...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp ACTTTCATCCCGAATACGTGTCACAGTGTTTGGGGCGGAACATTGTTTCATATGTCTTTGACTCTGGGATaGGCTCTTCACATTCTGGGC +
Preference number: 4 (lower is better)
Translates to: TFIPNTCHSVWGGTLFHMSLTLG*ALHILG
Trigger: GCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGA...CATATGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGATGAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR CCA 90 bp GAACTATTGGGAAGAAAAGAGGTTCATAGGAGTAGGTTGGGGCAACGGAAGGCATTGCACTCAGACACATaGCTTTGTGCTGAGACAGTA +
Preference number: 4 (lower is better)
Translates to: ELLGRKEVHRSRLGQRKALHSDT*LCAETV
Trigger: TACTGTCTCAGCACAAAGCCATGTGTCTGAGTGCAA...TGCCTTCCGTTGCCCCAACCTACTCCTATGAACCTCTTTTCTTCCCAATAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR TCA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCGTGCTCTTTCATCTTTaGCTCTGGGATGGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: LGQRKAMGISMITIHCKLVLFHL*LWDGLF
Trigger: GAAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCAC...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCTCCTTGGTCTGCTGGTaGACAACTTCCATGTGCTCT +
Preference number: 4 (lower is better)
Translates to: LGQRKAMGISMITIHCKLSLVCW*TTSMCS
Trigger: AGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGA...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp ACAGTGTTTGGGGCGGAACATTGTTTCATATGGGAGGCATACGTATTTTCTGGATCGTGGAGCATGAAGTaGAGAGAGGCCACATTTCTT +
Preference number: 4 (lower is better)
Translates to: TVFGAEHCFIWEAYVFSGSWSMK*REATFL
Trigger: AAGAAATGTGGCCTCTCTCCACTTCATGCTCCACGA...TCCAGAAAATACGTATGCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR CCA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCCTTTCCTTGGTCTGCTaGTGCACAACTTCCATGTGC +
Preference number: 4 (lower is better)
Translates to: LGQRKAMGISMITIHCKLLSLVC*CTTSMC
Trigger: GCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAG...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACATGCACAACTTCCATGTaGTCTTTCATCTTTGACTCT +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITCTTSM*SFIFDS
Trigger: AGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCA...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GCAAGGGTTGAAGGAATGACTATTATACTTTCATCCCGAATACGTGTCACAGTGAATTCTCTTCCCTGCTaGTGCACAACTTCCATGTGC +
Preference number: 4 (lower is better)
Translates to: ARVEGMTIILSSRIRVTVNSLPC*CTTSMC
Trigger: GCACATGGAAGTTGTGCACCAGCAGGGAAGAGAATT...CACTGTGACACGTATTCGGGATGAAAGTATAATAGTCATTCCTTCAACCCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR CCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGTGGAGTGTGATGGGCTaGTTGCAGTGTGGACAATGC +
Preference number: 4 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRWSVMG*LQCGQC
Trigger: GCATTGTCCACACTGCAACCAGCCCATCACACTCCA...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACAGGTGCTCATTTAGAATaGGCAAGGGAAGTAAAATTC +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITGAHLE*AREVKF
Trigger: GAATTTTACTTCCCTTGCCCATTCTAAATGAGCACC...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
3UTR CAA 72 bp CTATTATACTTTCATCCCGAATACGTGTCACAGTGTTaGGGGCGGAACATTGTTTCATATGGGAGGCATACG +
Preference number: 4 (lower is better)
Translates to: LLYFHPEYVSQC*GRNIVSYGRHT
Trigger: CGTATGCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGATGAAAGTATAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR TCA 90 bp AATGCAAGGGTTGAAGGAATGACTATTATACTTTCATCCCGAATACGTGTCACAGTGCTCTTTCATCTTTaGCTCTGGGATGGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: NARVEGMTIILSSRIRVTVLFHL*LWDGLF
Trigger: GAAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCAC...TGTGACACGTATTCGGGATGAAAGTATAATAGTCATTCCTTCAACCCTTGCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR GCA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACACTGGAATCATTTGTTTaGAAAGATCACAACGGGTTT +
Preference number: 4 (lower is better)
Translates to: VHCSCLLTVQKREPDLITLESFV*KDHNGF
Trigger: AAACCCGTTGTGATCTTTGCAAACAAATGATTCCAG...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR TCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGTGGAGTTTCTTTTGGTaGGCTAACCTCTGGCACTTC +
Preference number: 4 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRWSFFW*ANLWHF
Trigger: GAAGTGCCAGAGGTTAGCTCACCAAAAGAAACTCCA...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGTCGTGGAGCATGAAGTaGAGAGAGGCCACATTTCTT +
Preference number: 4 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRSWSMK*REATFL
Trigger: AAGAAATGTGGCCTCTCTCCACTTCATGCTCCACGA...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR TCA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCCAAGGGTTGAAGGAATaGCTATTATACTTTCATCCC +
Preference number: 4 (lower is better)
Translates to: LGQRKAMGISMITIHCKLQGLKE*LLYFHP
Trigger: GGGATGAAAGTATAATAGTCATTCCTTCAACCCTTG...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp TTTGGACGAACATCTTTACTCACTGTGGATCTTCGATTTCCAGAGTCCATAAATAGGCCACATTTCTTTTaGAGTTCCTGCACACTTGGA +
Preference number: 4 (lower is better)
Translates to: FGRTSLLTVDLRFPESINRPHFF*SSCTLG
Trigger: TCCAAGTGTGCAGGAACTGCAAAAGAAATGTGGCCT...ATTTATGGACTCTGGAAATCGAAGATCCACAGTGAGTAAAGATGTTCGTCCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR TCA 90 bp TTTGGACGAACATCTTTACTCACTGTGGATCTTCGATTTCCAGAGTCCATAAATTTTTCTTCCAGGAGATaGTACAATTCTCTTCCCTGC +
Preference number: 4 (lower is better)
Translates to: FGRTSLLTVDLRFPESINFSSRR*YNSLPC
Trigger: GCAGGGAAGAGAATTGTATCATCTCCTGGAAGAAAA...ATTTATGGACTCTGGAAATCGAAGATCCACAGTGAGTAAAGATGTTCGTCCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR GCA 90 bp CGATTTCCAGAGTCCATAAATGCAAGGGTTGAAGGAATGACTATTATACTTTCATACAATTCTCTTCCCTaGTGGTGCACAACTTCCATG +
Preference number: 4 (lower is better)
Translates to: RFPESINARVEGMTIILSYNSLP*WCTTSM
Trigger: CATGGAAGTTGTGCACCAGCAGGGAAGAGAATTGTA...TGAAAGTATAATAGTCATTCCTTCAACCCTTGCATTTATGGACTCTGGAAATCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR TCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGTTTTCTTCCAGGAGATaGTACAATTCTCTTCCCTTC +
Preference number: 4 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRFSSRR*YNSLPF
Trigger: GAAGGGAAGAGAATTGTATCATCTCCTGGAAGAAAA...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGGGCATACGTATTTTCTaGAATCATTTGTTTGCAAAG +
Preference number: 4 (lower is better)
Translates to: KAKKKVREKLRIKQGFLEGIRIF*NHLFAK
Trigger: CTTTGCAAACAAATGATTCCAGAAAATACGTATGCC...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CCA 90 bp GATGACTTTCTTAGCAGTTGGGATCCACTCATATGTTTCAAAACTTTACCTAGGCATCTTTACTCACTGTaGATCTTCGATTTCCAGAGT +
Preference number: 4 (lower is better)
Translates to: DDFLSSWDPLICFKTLPRHLYSL*IFDFQS
Trigger: ACTCTGGAAATCGAAGATCCACAGTGAGTAAAGATG...CCTAGGTAAAGTTTTGAAACATATGAGTGGATCCCAACTGCTAAGAAAGTCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR GCA 90 bp TCCATAAATGCAAGGGTTGAAGGAATGACTATTATACTTTCATCCCGAATACGTTGCACAACTTCCATGTaGTCTTTCATCTTTGACTCT +
Preference number: 4 (lower is better)
Translates to: SINARVEGMTIILSSRIRCTTSM*SFIFDS
Trigger: AGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCA...ACGTATTCGGGATGAAAGTATAATAGTCATTCCTTCAACCCTTGCATTTATGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS GCA 90 bp GTCCGGCTGCCACAGTGGGACTCATGGACATCCAGATTGCTAAGCTaGACGGCCAGCTCACAGAACTTGCACTTGGCAGGGTGCTGTTGG +
Preference number: 5 (lower is better)
Translates to: VRLPQWDSWTSRLLS*TASSQNLHLAGCCW
Trigger: CCAACAGCACCCTGCCAAGTGCAAGTTCTGTGAGCTGGCCGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS GCA 90 bp GAAGGAGGCACAGGAGGAGCCACACATTGGGAAGCAAGGCTGGGGTaGTTTAAGACACTGCAGCAGGTTCCTAGACAGGAGAGGAGGCAG +
Preference number: 5 (lower is better)
Translates to: EGGTGGATHWEARLG*FKTLQQVPRQERRQ
Trigger: CTGCCTCCTCTCCTGTCTAGGAACCTGCTGCAGTGTCTTAAAGCACCCCAGCCTTGCTTCCCAATGTGTGGCTCCTCCTGTGCCTCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151440.8
CDS CCA 90 bp ATGGGCTGGTTGCAGTGTGGACAATGCTCTGTCCGGCTGCCACAGTaGGACTCATGGACATCCAGATTGCTAAGCTGCACGGCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: MGWLQCGQCSVRLPQ*DSWTSRLLSCTASS
Trigger: TGAGCTGGCCGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTGTCCACACTGCAACCAGCCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 90 bp TTGCAGTGTGGACAATGCTCTGTCCGGCTGCCACAGTGGGACTCATaGACATCCAGATTGCTAAGCTGCACGGCCAGCTCACAGAACTTG +
Preference number: 5 (lower is better)
Translates to: LQCGQCSVRLPQWDS*TSRLLSCTASSQNL
Trigger: CAAGTTCTGTGAGCTGGCCGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTGTCCACACTGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 90 bp ACTGACAACAGTTCTGGAGAGTGTCATAGGCCGTCTCGTCTCCTGTaGGAAGATCAGCCCTCTGCTGGAGCCCAGACTTCAAAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: TDNSSGECHRPSRLL*EDQPSAGAQTSKAE
Trigger: CTCTGCCTTTGAAGTCTGGGCTCCAGCAGAGGGCTGATCTTCCCACAGGAGACGAGACGGCCTATGACACTCTCCAGAACTGTTGTCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS TCA 90 bp TTGCACTCAGACACATGGCTTTGTGCTGAGACAGTACTTGGAGTGTaGTGGGCTGGTTGCAGTGTGGACAATGCTCTGTCCGGCTGCCAC +
Preference number: 5 (lower is better)
Translates to: LHSDTWLCAETVLGV*WAGCSVDNALSGCH
Trigger: GTGGCAGCCGGACAGAGCATTGTCCACACTGCAACCAGCCCATCACACTCCAAGTACTGTCTCAGCACAAAGCCATGTGTCTGAGTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 90 bp TTTGTGCTGAGACAGTACTTGGAGTGTGATGGGCTGGTTGCAGTGTaGACAATGCTCTGTCCGGCTGCCACAGTGGGACTCATGGACATC +
Preference number: 5 (lower is better)
Translates to: FVLRQYLECDGLVAV*TMLCPAATVGLMDI
Trigger: GATGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTGTCCACACTGCAACCAGCCCATCACACTCCAAGTACTGTCTCAGCACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 90 bp CAAAGGACTATGAAGCGCAGGCAGTGGGCCTCGTGGAGCATGAAGTaGAGAGAGGCCACATTTCTTTTGCAGTTCCTGCACACTTGGAAG +
Preference number: 5 (lower is better)
Translates to: QRTMKRRQWASWSMK*REATFLLQFLHTWK
Trigger: CTTCCAAGTGTGCAGGAACTGCAAAAGAAATGTGGCCTCTCTCCACTTCATGCTCCACGAGGCCCACTGCCTGCGCTTCATAGTCCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094041.4
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS CCA 90 bp ATGGGCTCTTCACATTCTGGGCAAAGGACTATGAAGCGCAGGCAGTaGGCCTCGTGGAGCATGAAGTGGAGAGAGGCCACATTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: MGSSHSGQRTMKRRQ*ASWSMKWREATFLL
Trigger: CAAAAGAAATGTGGCCTCTCTCCACTTCATGCTCCACGAGGCCCACTGCCTGCGCTTCATAGTCCTTTGCCCAGAATGTGAAGAGCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094041.4
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS GCA 90 bp TCACAGAACTTGCACTTGGCAGGGTGCTGTTGGCTTTCCTTGGTCTaGTGGTGCACAACTTCCATGTGCTCTTTCATCTTTGACTCTGGG +
Preference number: 5 (lower is better)
Translates to: SQNLHLAGCCWLSLV*WCTTSMCSFIFDSG
Trigger: CCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAAGTTCTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 90 bp CAGAACTTGCACTTGGCAGGGTGCTGTTGGCTTTCCTTGGTCTGCTaGTGCACAACTTCCATGTGCTCTTTCATCTTTGACTCTGGGATG +
Preference number: 5 (lower is better)
Translates to: QNLHLAGCCWLSLVC*CTTSMCSFIFDSGM
Trigger: CATCCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAAGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 90 bp CCAGCTCACAGAACTTGCACTTGGCAGGGTGCTGTTGGCTTTCCTTaGTCTGCTGGTGCACAACTTCCATGTGCTCTTTCATCTTTGACT +
Preference number: 5 (lower is better)
Translates to: PAHRTCTWQGAVGFP*SAGAQLPCALSSLT
Trigger: AGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAAGTTCTGTGAGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CAA 90 bp GGGTACTATCAGATGCTCTTTTCTGGATTCCGCATGGCCATGGCTGTTGCAAACTGCTGTTGGCTTTCCTaGGTCTGCTGGTGCACAACT +
Preference number: 5 (lower is better)
Translates to: GYYQMLFSGFRMAMAVANCCWLS*VCWCTT
Trigger: AGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCA...GTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCTGATAGTACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS GCA 90 bp CGAATACGTGTCACAGTGTTTGGGGCGGAACATTGTTTCTGCTGGTaGACAACTTCCATGTGCTCTTTCATCTTTGACTCTGGGATGGGC +
Preference number: 5 (lower is better)
Translates to: RIRVTVFGAEHCFCW*TTSMCSFIFDSGMG
Trigger: GCCCATCCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140842.9
ENSMUST00000151440.8
CDS-3UTR CAA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACATCACAGAACTTGCACTaGGCAGGGTGCTGTTGGCTT +
Preference number: 5 (lower is better)
Translates to: VHCSCLLTVQKREPDLITSQNLH*AGCCWL
Trigger: AAGCCAACAGCACCCTGCCAAGTGCAAGTTCTGTGA...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CAA 90 bp GTACACTGTAGCTGTCTTCTGACAGTCCAGAAGAGGGAGCCAGATCTCATTACAGAGGCCACATTTCTTTaGCAGTTCCTGCACACTTGG +
Preference number: 5 (lower is better)
Translates to: VHCSCLLTVQKREPDLITEATFL*QFLHTW
Trigger: CCAAGTGTGCAGGAACTGCAAAAGAAATGTGGCCTC...TGTAATGAGATCTGGCTCCCTCTTCTGGACTGTCAGAAGACAGCTACAGTGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CAA 90 bp GGGTACTATCAGATGCTCTTTTCTGGATTCCGCATGGCCATGGCTGTTGCAAACTGTGCTCTTTCATCTTaGACTCTGGGATGGGCTCTT +
Preference number: 5 (lower is better)
Translates to: GYYQMLFSGFRMAMAVANCALSS*TLGWAL
Trigger: AAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCACA...GTTTGCAACAGCCATGGCCATGCGGAATCCAGAAAAGAGCATCTGATAGTACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CAA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGCTTGGCAGGGTGCTGTaGGCTTTCCTTGGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: KAKKKVREKLRIKQGFLELGRVL*AFLGLL
Trigger: CAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAG...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CAA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGCCTCAGGCCTGCCCTTaGCACTCAGACACATGGCTT +
Preference number: 5 (lower is better)
Translates to: KAKKKVREKLRIKQGFLEPQACP*HSDTWL
Trigger: AAGCCATGTGTCTGAGTGCAAAGGGCAGGCCTGAGG...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS TCA 90 bp TTCTCTTCCCTGCTGGTGCACAACTTCCATGTGCTCTTTCATCTTTaGCTCTGGGATGGGCTCTTCACATTCTGGGCAAAGGACTATGAA +
Preference number: 5 (lower is better)
Translates to: FSSLLVHNFHVLFHL*LWDGLFTFWAKDYE
Trigger: TTCATAGTCCTTTGCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGGGAAGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS CCA 90 bp TTTGGTGAGCTAACCTCTGGCACTTCTCCTGGTGCTCATTTAGAATaGGCAAGGGAAGTAAAATTCGGCACTGACAACAGTTCTGGAGAG +
Preference number: 5 (lower is better)
Translates to: FGELTSGTSPGAHLE*AREVKFGTDNSSGE
Trigger: CTCTCCAGAACTGTTGTCAGTGCCGAATTTTACTTCCCTTGCCCATTCTAAATGAGCACCAGGAGAAGTGCCAGAGGTTAGCTCACCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140842.9
ENSMUST00000146233.8
CDS-3UTR CAA 90 bp TTGGGGCAACGGAAGGCAATGGGGATAAGCATGATTACAATACATTGTAAACTCAGTGTGATGGGCTGGTaGCAGTGTGGACAATGCTCT +
Preference number: 5 (lower is better)
Translates to: LGQRKAMGISMITIHCKLSVMGW*QCGQCS
Trigger: AGAGCATTGTCCACACTGCAACCAGCCCATCACACT...GAGTTTACAATGTATTGTAATCATGCTTATCCCCATTGCCTTCCGTTGCCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS TCA 90 bp ACATTGTTTCTGCTGGTGCACAACTTCCATGTGCTCTTTCATCTTTaGCTCTGGGATGGGCTCTTCACATTCTGGGCAAAGGACTATGAA +
Preference number: 5 (lower is better)
Translates to: TLFLLVHNFHVLFHL*LWDGLFTFWAKDYE
Trigger: TTCATAGTCCTTTGCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGAAACAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140842.9
ENSMUST00000151440.8
CDS-3UTR CAA 90 bp CCAGAGTCCATAAATGCAAGGGTTGAAGGAATGACTATTATACTTTCATCCCGAGAGGCCACATTTCTTTaGCAGTTCCTGCACACTTGG +
Preference number: 5 (lower is better)
Translates to: PESINARVEGMTIILSSREATFL*QFLHTW
Trigger: CCAAGTGTGCAGGAACTGCAAAAGAAATGTGGCCTC...TCGGGATGAAAGTATAATAGTCATTCCTTCAACCCTTGCATTTATGGACTCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS CCA 90 bp TCCCGAATACGTGTCACAGTGTTTGGGGCGGAACATTGTTTCATATaGGAGGCATACGTATTTTCTGGAATCATTTGTTTGCAAAGATCA +
Preference number: 5 (lower is better)
Translates to: SRIRVTVFGAEHCFI*EAYVFSGIICLQRS
Trigger: TGATCTTTGCAAACAAATGATTCCAGAAAATACGTATGCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS-3UTR CAA 90 bp TCCATAAATGCAAGGGTTGAAGGAATGACTATTATACTTTCATCCCGAATACGTTGTGCTCTTTCATCTTaGACTCTGGGATGGGCTCTT +
Preference number: 5 (lower is better)
Translates to: SINARVEGMTIILSSRIRCALSS*TLGWAL
Trigger: AAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCACA...ACGTATTCGGGATGAAAGTATAATAGTCATTCCTTCAACCCTTGCATTTATGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS-3UTR CAA 90 bp AAGGCAAAGAAAAAGGTCAGGGAGAAACTTAGGATAAAGCAGGGGTTTCTTGAGTCTGGAATCATTTGTTaGCAAAGATCACAACGGGTT +
Preference number: 5 (lower is better)
Translates to: KAKKKVREKLRIKQGFLESGIIC*QRSQRV
Trigger: AACCCGTTGTGATCTTTGCAAACAAATGATTCCAGA...CTCAAGAAACCCCTGCTTTATCCTAAGTTTCTCCCTGACCTTTTTCTTTGCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 72 bp GCCGTCTCGTCTCCTGTGGGAAGATCAGCCCTCTGCTaGAGCCCAGACTTCAAAGGCAGAGCCACAGTGCCA +
Preference number: 6 (lower is better)
Translates to: AVSSPVGRSALC*SPDFKGRATVP
Trigger: TGGCACTGTGGCTCTGCCTTTGAAGTCTGGGCTCCAGCAGAGGGCTGATCTTCCCACAGGAGACGAGACGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS CAA 90 bp CAATGCTCTGTCCGGCTGCCACAGTGGGACTCATGGACATCCAGATaGCTAAGCTGCACGGCCAGCTCACAGAACTTGCACTTGGCAGGG +
Preference number: 6 (lower is better)
Translates to: QCSVRLPQWDSWTSR*LSCTASSQNLHLAG
Trigger: CCCTGCCAAGTGCAAGTTCTGTGAGCTGGCCGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 72 bp GGACAATGCTCTGTCCGGCTGCCACAGTGGGACTCATaGACATCCAGATTGCTAAGCTGCACGGCCAGCTCA +
Preference number: 6 (lower is better)
Translates to: GQCSVRLPQWDS*TSRLLSCTASS
Trigger: TGAGCTGGCCGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CAA 72 bp GTCCGGCTGCCACAGTGGGACTCATGGACATCCAGATaGCTAAGCTGCACGGCCAGCTCACAGAACTTGCAC +
Preference number: 6 (lower is better)
Translates to: VRLPQWDSWTSR*LSCTASSQNLH
Trigger: GTGCAAGTTCTGTGAGCTGGCCGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS GCA 72 bp ACTTGGAGTGTGATGGGCTGGTTGCAGTGTGGACAATaGTCTGTCCGGCTGCCACAGTGGGACTCATGGACA +
Preference number: 6 (lower is better)
Translates to: TWSVMGWLQCGQ*SVRLPQWDSWT
Trigger: TGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTGTCCACACTGCAACCAGCCCATCACACTCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 72 bp TCACATTCTGGGCAAAGGACTATGAAGCGCAGGCAGTaGGCCTCGTGGAGCATGAAGTGGAGAGAGGCCACA +
Preference number: 6 (lower is better)
Translates to: SHSGQRTMKRRQ*ASWSMKWREAT
Trigger: TGTGGCCTCTCTCCACTTCATGCTCCACGAGGCCCACTGCCTGCGCTTCATAGTCCTTTGCCCAGAATGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094041.4
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS CCA 72 bp AGACAGTACTTGGAGTGTGATGGGCTGGTTGCAGTGTaGACAATGCTCTGTCCGGCTGCCACAGTGGGACTC +
Preference number: 6 (lower is better)
Translates to: RQYLECDGLVAV*TMLCPAATVGL
Trigger: GAGTCCCACTGTGGCAGCCGGACAGAGCATTGTCCACACTGCAACCAGCCCATCACACTCCAAGTACTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 72 bp AGTTCTGGAGAGTGTCATAGGCCGTCTCGTCTCCTGTaGGAAGATCAGCCCTCTGCTGGAGCCCAGACTTCA +
Preference number: 6 (lower is better)
Translates to: SSGECHRPSRLL*EDQPSAGAQTS
Trigger: TGAAGTCTGGGCTCCAGCAGAGGGCTGATCTTCCCACAGGAGACGAGACGGCCTATGACACTCTCCAGAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS CCA 72 bp GAGGCACAGGAGGAGCCACACATTGGGAAGCAAGGCTaGGGTGCTTTAAGACACTGCAGCAGGTTCCTAGAC +
Preference number: 6 (lower is better)
Translates to: EAQEEPHIGKQG*GALRHCSRFLD
Trigger: GTCTAGGAACCTGCTGCAGTGTCTTAAAGCACCCCAGCCTTGCTTCCCAATGTGTGGCTCCTCCTGTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151440.8
CDS TCA 72 bp GGCCTGCCCTTTGCACTCAGACACATGGCTTTGTGCTaGGACAGTACTTGGAGTGTGATGGGCTGGTTGCAG +
Preference number: 6 (lower is better)
Translates to: GLPFALRHMALC*DSTWSVMGWLQ
Trigger: CTGCAACCAGCCCATCACACTCCAAGTACTGTCTCAGCACAAAGCCATGTGTCTGAGTGCAAAGGGCAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS GCA 72 bp ACAGGAGGAGCCACACATTGGGAAGCAAGGCTGGGGTaGTTTAAGACACTGCAGCAGGTTCCTAGACAGGAG +
Preference number: 6 (lower is better)
Translates to: TGGATHWEARLG*FKTLQQVPRQE
Trigger: CTCCTGTCTAGGAACCTGCTGCAGTGTCTTAAAGCACCCCAGCCTTGCTTCCCAATGTGTGGCTCCTCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151440.8
CDS CCA 72 bp ATGAAGCGCAGGCAGTGGGCCTCGTGGAGCATGAAGTaGAGAGAGGCCACATTTCTTTTGCAGTTCCTGCAC +
Preference number: 6 (lower is better)
Translates to: MKRRQWASWSMK*REATFLLQFLH
Trigger: GTGCAGGAACTGCAAAAGAAATGTGGCCTCTCTCCACTTCATGCTCCACGAGGCCCACTGCCTGCGCTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094041.4
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS CCA 72 bp TTGCAGTGTGGACAATGCTCTGTCCGGCTGCCACAGTaGGACTCATGGACATCCAGATTGCTAAGCTGCACG +
Preference number: 6 (lower is better)
Translates to: LQCGQCSVRLPQ*DSWTSRLLSCT
Trigger: CGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTGTCCACACTGCAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CAA 72 bp TCCAGATTGCTAAGCTGCACGGCCAGCTCACAGAACTaGCACTTGGCAGGGTGCTGTTGGCTTTCCTTGGTC +
Preference number: 6 (lower is better)
Translates to: SRLLSCTASSQN*HLAGCCWLSLV
Trigger: GACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAAGTTCTGTGAGCTGGCCGTGCAGCTTAGCAATCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CAA 90 bp CCTGCCCTTTGCACTCAGACACATGGCTTTGTGCTGAGACAGTACTaGGAGTGTGATGGGCTGGTTGCAGTGTGGACAATGCTCTGTCCG +
Preference number: 6 (lower is better)
Translates to: PALCTQTHGFVLRQY*ECDGLVAVWTMLCP
Trigger: CGGACAGAGCATTGTCCACACTGCAACCAGCCCATCACACTCCAAGTACTGTCTCAGCACAAAGCCATGTGTCTGAGTGCAAAGGGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS TCA 72 bp GACACATGGCTTTGTGCTGAGACAGTACTTGGAGTGTaGTGGGCTGGTTGCAGTGTGGACAATGCTCTGTCC +
Preference number: 6 (lower is better)
Translates to: DTWLCAETVLGV*WAGCSVDNALS
Trigger: GGACAGAGCATTGTCCACACTGCAACCAGCCCATCACACTCCAAGTACTGTCTCAGCACAAAGCCATGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CAA 90 bp GCCAGCTCACAGAACTTGCACTTGGCAGGGTGCTGTTGGCTTTCCTaGGTCTGCTGGTGCACAACTTCCATGTGCTCTTTCATCTTTGAC +
Preference number: 6 (lower is better)
Translates to: ASSQNLHLAGCCWLS*VCWCTTSMCSFIFD
Trigger: GTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAAGTTCTGTGAGCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 72 bp CACTTGGCAGGGTGCTGTTGGCTTTCCTTGGTCTGCTaGTGCACAACTTCCATGTGCTCTTTCATCTTTGAC +
Preference number: 6 (lower is better)
Translates to: HLAGCCWLSLVC*CTTSMCSFIFD
Trigger: GTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CCA 72 bp AGAACTTGCACTTGGCAGGGTGCTGTTGGCTTTCCTTaGTCTGCTGGTGCACAACTTCCATGTGCTCTTTCA +
Preference number: 6 (lower is better)
Translates to: RTCTWQGAVGFP*SAGAQLPCALS
Trigger: TGAAAGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAAGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS GCA 72 bp TTGCACTTGGCAGGGTGCTGTTGGCTTTCCTTGGTCTaGTGGTGCACAACTTCCATGTGCTCTTTCATCTTT +
Preference number: 6 (lower is better)
Translates to: LHLAGCCWLSLV*WCTTSMCSFIF
Trigger: AAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CAA 72 bp CCTGCTGGTGCACAACTTCCATGTGCTCTTTCATCTTaGACTCTGGGATGGGCTCTTCACATTCTGGGCAAA +
Preference number: 6 (lower is better)
Translates to: PAGAQLPCALSS*TLGWALHILGK
Trigger: TTTGCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS CAA 72 bp TCTGCTGGTGCACAACTTCCATGTGCTCTTTCATCTTaGACTCTGGGATGGGCTCTTCACATTCTGGGCAAA +
Preference number: 6 (lower is better)
Translates to: SAGAQLPCALSS*TLGWALHILGK
Trigger: TTTGCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000140842.9
ENSMUST00000146233.8
ENSMUST00000151440.8
CDS CAA 72 bp ATCCCGAATACGTGTCACAGTGTTTGGGGCGGAACATaGTTTCTGCTGGTGCACAACTTCCATGTGCTCTTT +
Preference number: 6 (lower is better)
Translates to: IPNTCHSVWGGT*FLLVHNFHVLF
Trigger: AAAGAGCACATGGAAGTTGTGCACCAGCAGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140842.9
ENSMUST00000151440.8
CDS GCA 72 bp TACAATTCTCTTCCCTGCTGGTGCACAACTTCCATGTaGTCTTTCATCTTTGACTCTGGGATGGGCTCTTCA +
Preference number: 6 (lower is better)
Translates to: YNSLPCWCTTSM*SFIFDSGMGSS
Trigger: TGAAGAGCCCATCCCAGAGTCAAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGGGAAGAGAATTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094041.4
CDS CCA 72 bp CTAACCTCTGGCACTTCTCCTGGTGCTCATTTAGAATaGGCAAGGGAAGTAAAATTCGGCACTGACAACAGT +
Preference number: 6 (lower is better)
Translates to: LTSGTSPGAHLE*AREVKFGTDNS
Trigger: ACTGTTGTCAGTGCCGAATTTTACTTCCCTTGCCCATTCTAAATGAGCACCAGGAGAAGTGCCAGAGGTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140842.9
ENSMUST00000146233.8
CDS GCA 72 bp ATACGTGTCACAGTGTTTGGGGCGGAACATTGTTTCTaGTGGTGCACAACTTCCATGTGCTCTTTCATCTTT +
Preference number: 6 (lower is better)
Translates to: IRVTVFGAEHCF*WCTTSMCSFIF
Trigger: AAAGATGAAAGAGCACATGGAAGTTGTGCACCAGCAGAAACAATGTTCCGCCCCAAACACTGTGACACGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140842.9
ENSMUST00000151440.8
CDS GCA 72 bp AGGCAGTTAGGGATGCAAGGAGAACAAAGTACCTGGTaGTCATTTAGAATGGGCAAGGGAAGTAAAATTCGG +
Preference number: 6 (lower is better)
Translates to: RQLGMQGEQSTW*SFRMGKGSKIR
Trigger: CCGAATTTTACTTCCCTTGCCCATTCTAAATGAGCACCAGGTACTTTGTTCTCCTTGCATCCCTAACTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151440.8
CDS CCA 72 bp TGCAAGGAGAACAAAGTACCTGGTGCTCATTTAGAATaGGCAAGGGAAGTAAAATTCGGCACTGACAACAGT +
Preference number: 6 (lower is better)
Translates to: CKENKVPGAHLE*AREVKFGTDNS
Trigger: ACTGTTGTCAGTGCCGAATTTTACTTCCCTTGCCCATTCTAAATGAGCACCAGGTACTTTGTTCTCCTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151440.8
CDS CCA 72 bp AGGAGGCAGTTAGGGATGCAAGGAGAACAAAGTACCTaGTGCTCATTTAGAATGGGCAAGGGAAGTAAAATT +
Preference number: 6 (lower is better)
Translates to: RRQLGMQGEQST*CSFRMGKGSKI
Trigger: AATTTTACTTCCCTTGCCCATTCTAAATGAGCACCAGGTACTTTGTTCTCCTTGCATCCCTAACTGCCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151440.8
CDS CAA 72 bp CTATTATACTTTCATCCCGAATACGTGTCACAGTGTTaGGGGCGGAACATTGTTTCTGCTGGTGCACAACTT +
Preference number: 6 (lower is better)
Translates to: LLYFHPEYVSQC*GRNIVSAGAQL
Trigger: AAGTTGTGCACCAGCAGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGATGAAAGTATAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140842.9
ENSMUST00000151440.8
CDS CAA 90 bp TATACTTTCATCCCGAATACGTGTCACAGTGTTTGGGGCGGAACATaGTTTCATATGGGAGGCATACGTATTTTCTGGAATCATTTGTTT +
Preference number: 6 (lower is better)
Translates to: YTFIPNTCHSVWGGT*FHMGGIRIFWNHLF
Trigger: AAACAAATGATTCCAGAAAATACGTATGCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGATGAAAGTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8
CDS CAA 90 bp CATTGTTTCATATGGGAGGCATACGTATTTTCTGGAATCATTTGTTaGCAAAGATCACAACGGGTTTTTCTTCCAGGAGATGATACAATT +
Preference number: 6 (lower is better)
Translates to: HCFIWEAYVFSGIIC*QRSQRVFLPGDDTI
Trigger: AATTGTATCATCTCCTGGAAGAAAAACCCGTTGTGATCTTTGCAAACAAATGATTCCAGAAAATACGTATGCCTCCCATATGAAACAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146233.8