Pregenerated sensors for WTIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036459Ensembl transcript IDs: ENSMUST00000038537.9, ENSMUST00000140911.4
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCACACACGCTACACTTGTCAGCTGTTTGCTGGAACCCGGAGTACTaGGAGGGGACACAGGATCCAGGACGTCACGTGACAAAGGGGCAC | + |
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Preference number: 1 (lower is better) Translates to: PHTLHLSAVCWNPEY*EGTQDPGRHVTKGH Trigger: GTGCCCCTTTGTCACGTGACGTCCTGGATCCTGTGTCCCCTCTCAGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR-3UTR CCA 90 bp | TGTTTGCTGGAACCCGGAGTACTGAGAGGGGACACAGGATCCAGGACGTCACGTTGCTCCCACCCAGCTTaGCAAGCAGCACAGTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: CLLEPGVLRGDTGSRTSRCSHPA*QAAQWR Trigger: TCTCCACTGTGCTGCTTGCCAAGCTGGGTGGGAGCA...ACGTGACGTCCTGGATCCTGTGTCCCCTCTCAGTACTCCGGGTTCCAGCAAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR CAA 90 bp | CATCTCCATGATGAGGTGTCCACACACGCTACACTTGTCAGCTGTTaGCTGGAACCCGGAGTACTGAGAGGGGACACAGGATCCAGGACG | + |
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Preference number: 2 (lower is better) Translates to: HLHDEVSTHATLVSC*LEPGVLRGDTGSRT Trigger: CGTCCTGGATCCTGTGTCCCCTCTCAGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGGACACCTCATCATGGAGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR-3UTR CCA 90 bp | CAGAGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGGCCAAATCGTGGTATACTGTGCGAGTGTCCTaGAATCCAGCAGGGGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: QRGGELQLKIPIKAKSWYTVRVS*NPAGEV Trigger: CACTTCCCCTGCTGGATTCCAGGACACTCGCACAGT...ATACCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR-3UTR TCA 90 bp | TGTGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAAGACCCTCCAATTGAGGCACAGAAGGTaGATAAATAGAAATCGCTTC | + |
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Preference number: 2 (lower is better) Translates to: CGRTQIRHLSPTSSKTLQLRHRR*INRNRF Trigger: GAAGCGATTTCTATTTATTCACCTTCTGTGCCTCAA...TTGGAGGGTCTTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGGCCAAATCGTGGTATTTCATCCAGCAGGGGAAGTaGCTTGAGGCACAGAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: RGGELQLKIPIKAKSWYFIQQGK*LEAQKV Trigger: CACCTTCTGTGCCTCAAGTCACTTCCCCTGCTGGAT...GAAATACCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR CCA 72 bp | ATCGCTTCTTTGTTGCGGGGGTCCGGCCCCTGCGGGTaGGGAGGAGCGTGGGCCACTCCTCTCCTCTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: IASLLRGSGPCG*GGAWATPLLSV Trigger: CACAGAGAGGAGAGGAGTGGCCCACGCTCCTCCCCACCCGCAGGGGCCGGACCCCCGCAACAAAGAAGCGAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR-3UTR CAA 90 bp | CAGCTCCAAGACCCTCCAATCCCTGCCATGGGAGCTGAGACCGGTCGGAGGAAGGAAATCGCTTCTTTGTaGCGGGGGTCCGGCCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: QLQDPPIPAMGAETGRRKEIASL*RGSGPC Trigger: GCAGGGGCCGGACCCCCGCAACAAAGAAGCGATTTC...CTTCCTCCGACCGGTCTCAGCTCCCATGGCAGGGATTGGAGGGTCTTGGAGCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR TCA 72 bp | CCAGCTCCAAGACCCTCCAATCCCTGCCATGGGAGCTaGGACCGGTCGGAGGAAGGTAGTCTACTGTGCGAG | + |
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Preference number: 3 (lower is better) Translates to: PAPRPSNPCHGS*DRSEEGSLLCE Trigger: CTCGCACAGTAGACTACCTTCCTCCGACCGGTCTCAGCTCCCATGGCAGGGATTGGAGGGTCTTGGAGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR-3UTR CAA 90 bp | AGCTGTTTGCTGGAACCCGGAGTACTGAGAGGGGACACAGGATCCAGGACGTCACTGCTCCCACCCAGCTaGGCAAGCAGCACAGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: SCLLEPGVLRGDTGSRTSLLPPS*ASSTVE Trigger: CTCCACTGTGCTGCTTGCCAAGCTGGGTGGGAGCAG...TGACGTCCTGGATCCTGTGTCCCCTCTCAGTACTCCGGGTTCCAGCAAACAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR TCA 72 bp | AGTACTGAGAGGGGACACAGGATCCAGGACGTCACGTaGCAAAGGGGCACTCACTGTCGCTGGCCTCAGGTC | + |
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Preference number: 3 (lower is better) Translates to: STERGHRIQDVT*QRGTHCRWPQV Trigger: GACCTGAGGCCAGCGACAGTGAGTGCCCCTTTGTCACGTGACGTCCTGGATCCTGTGTCCCCTCTCAGTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR TCA 72 bp | CTACACTTGTCAGCTGTTTGCTGGAACCCGGAGTACTaGGAGGGGACACAGGATCCAGGACGTCACGTGACA | + |
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Preference number: 3 (lower is better) Translates to: LHLSAVCWNPEY*EGTQDPGRHVT Trigger: TGTCACGTGACGTCCTGGATCCTGTGTCCCCTCTCAGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR-3UTR CAA 90 bp | ACGGGCACAGGAGGCACATTTTGGTGCAAACACCGTATGATAGTCTCTAACGCACCACACACGCTACACTaGTCAGCTGTTTGCTGGAAC | + |
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Preference number: 3 (lower is better) Translates to: TGTGGTFWCKHRMIVSNAPHTLH*SAVCWN Trigger: GTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGG...TGCGTTAGAGACTATCATACGGTGTTTGCACCAAAATGTGCCTCCTGTGCCCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR TCA 72 bp | CCCAAGCCAGGATCCAGAGAGGAGGAGAACTGCAGCTaGAAATACCCATCAAGGCCAAATCGTGGTATTTCC | + |
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Preference number: 3 (lower is better) Translates to: PKPGSREEENCS*KYPSRPNRGIS Trigger: GGAAATACCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCTCTGGATCCTGGCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR-3UTR CAA 90 bp | GGCACAGGAGGCACATTTTGGTGCAAACACCGTATGATAGTCTCTAACGCAGTAACACTTGTCAGCTGTTaGCTGGAACCCGGAGTACTG | + |
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Preference number: 3 (lower is better) Translates to: GTGGTFWCKHRMIVSNAVTLVSC*LEPGVL Trigger: CAGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGT...TACTGCGTTAGAGACTATCATACGGTGTTTGCACCAAAATGTGCCTCCTGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| 3UTR TCA 72 bp | GAATCCAGCAGGGGAAGTGACTTGAGGCACAGAAGGTaGATAAATAGAAATCGCTTCTTTGTTGCGGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: ESSRGSDLRHRR*INRNRFFVAGV Trigger: GACCCCCGCAACAAAGAAGCGATTTCTATTTATTCACCTTCTGTGCCTCAAGTCACTTCCCCTGCTGGATTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR TCA 90 bp | CAGCTCCAAGACCCTCCAATCCCTGCCATGGGAGCTGAGACCGGTCGGAGGAAGGCTCCAGTTCCCGCGTaGGCGCCTCCAGCCGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: QLQDPPIPAMGAETGRRKAPVPA*APPAAA Trigger: AGCGGCGGCTGGAGGCGCTCACGCGGGAACTGGAGC...CTTCCTCCGACCGGTCTCAGCTCCCATGGCAGGGATTGGAGGGTCTTGGAGCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR GCA 90 bp | TCAGGTCTGCATGTGAGTCCGAAGGAGGTTCCCGCCCTGCTCCCACCCAGCTTGAGTAGTCTCGCGCCGTaGGCGCCTCGAGCGCGCGCT | + |
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Preference number: 4 (lower is better) Translates to: SGLHVSPKEVPALLPPSLSSLAP*APRARA Trigger: AGCGCGCGCTCGAGGCGCGCACGGCGCGAGACTACT...CAAGCTGGGTGGGAGCAGGGCGGGAACCTCCTTCGGACTCACATGCAGACCTGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| CDS-3UTR CCA 90 bp | TCCCTGGCTCTGTGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAACACGGGAACCCAGGCTaGACACGCTGGAGCGCGCGC | + |
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Preference number: 4 (lower is better) Translates to: SLALWSHTNKAPVPHQLQHGNPG*TRWSAR Trigger: GCGCGCGCTCCAGCGTGTCCAGCCTGGGTTCCCGTG...TTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCACAGAGCCAGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR CCA 90 bp | TTGCTGGAACCCGGAGTACTGAGAGGGGACACAGGATCCAGGACGTCACGTGACCACGGGAACCCAGGCTaGACACGCTGGAGCGCGCGC | + |
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Preference number: 4 (lower is better) Translates to: LLEPGVLRGDTGSRTSRDHGNPG*TRWSAR Trigger: GCGCGCGCTCCAGCGTGTCCAGCCTGGGTTCCCGTG...GTCACGTGACGTCCTGGATCCTGTGTCCCCTCTCAGTACTCCGGGTTCCAGCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| CDS-3UTR GCA 90 bp | CCCCAAGCCAGGATCCAGAGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGAGTAGTCTCGCGCCGTaGGCGCCTCGAGCGCGCGCT | + |
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Preference number: 4 (lower is better) Translates to: PQARIQRGGELQLKIPIKSSLAP*APRARA Trigger: AGCGCGCGCTCGAGGCGCGCACGGCGCGAGACTACT...CTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCTCTGGATCCTGGCTTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR TCA 90 bp | ACGGGCACAGGAGGCACATTTTGGTGCAAACACCGTATGATAGTCTCTAACGCAGCTCCAGTTCCCGCGTaGGCGCCTCCAGCCGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: TGTGGTFWCKHRMIVSNAAPVPA*APPAAA Trigger: AGCGGCGGCTGGAGGCGCTCACGCGGGAACTGGAGC...TGCGTTAGAGACTATCATACGGTGTTTGCACCAAAATGTGCCTCCTGTGCCCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| CDS-3UTR GCA 90 bp | TGTGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAAGACCCTCCAATGTCTCACAGCCCTGTaGAGGGAGGATGGGACGGGC | + |
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Preference number: 4 (lower is better) Translates to: CGRTQIRHLSPTSSKTLQCLTAL*REDGTG Trigger: GCCCGTCCCATCCTCCCTGCACAGGGCTGTGAGACA...TTGGAGGGTCTTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR CCA 90 bp | TCCCTGGCTCTGTGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAATGGACACCACACGAATaGTTGTCTCACAGCCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLALWSHTNKAPVPHQLQWTPHE*LSHSPV Trigger: CACAGGGCTGTGAGACAACCATTCGTGTGGTGTCCA...TTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCACAGAGCCAGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR CCA 90 bp | TCCCTGGCTCTGTGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAATTGTCAGCTGTTTGCTaGAACCCGGAGTACAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SLALWSHTNKAPVPHQLQLSAVC*NPEYRK Trigger: CTTCCTGTACTCCGGGTTCCAGCAAACAGCTGACAA...TTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCACAGAGCCAGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| 3UTR CAA 72 bp | GATGAGGTGTCCACACACGCTACACTTGTCAGCTGTTaGCTGGAACCCGGAGTACTGAGAGGGGACACAGGA | + |
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Preference number: 4 (lower is better) Translates to: DEVSTHATLVSC*LEPGVLRGDTG Trigger: TCCTGTGTCCCCTCTCAGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGGACACCTCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| CDS-3UTR GCA 90 bp | ATCCAGAGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGGCCAAATCGTGGCAGAGCTCAGTCACATaGACAGCAGGCGAGGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: IQRGGELQLKIPIKAKSWQSSVT*TAGEGS Trigger: GCTCCCCTCGCCTGCTGTGCATGTGACTGAGCTCTG...CCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCTCTGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR CCA 90 bp | AGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGGCCAAATCGTGGTATTTCAACGGGAAGGGGAACTaGGCAGGCTCCGGAGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: RGGELQLKIPIKAKSWYFNGKGN*AGSGER Trigger: CCGCTCTCCGGAGCCTGCCCAGTTCCCCTTCCCGTT...GAAATACCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR CCA 90 bp | TGTGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAAGACCCTCCAATACAGGAAGTCCTCCTaGCAGTACACTTTCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: CGRTQIRHLSPTSSKTLQYRKSS*QYTFSP Trigger: GGGTGAGAAAGTGTACTGCCAGGAGGACTTCCTGTA...TTGGAGGGTCTTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR TCA 90 bp | AGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGGCCAAATCGTGGTATTTCGCACTCGTTGCACACTaGGCAGCGGAAGCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: RGGELQLKIPIKAKSWYFALVAH*AAEAAW Trigger: CCAGGCTGCTTCCGCTGCTCAGTGTGCAACGAGTGC...GAAATACCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR GCA 90 bp | TGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAAGACCCTCCAATCGGAGGCACATTTTGGTaGAAACACCGTATGATAGTC | + |
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Preference number: 4 (lower is better) Translates to: WSHTNKAPVPHQLQDPPIGGTFW*KHRMIV Trigger: GACTATCATACGGTGTTTGCACCAAAATGTGCCTCC...GATTGGAGGGTCTTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR CCA 90 bp | ATGATAGTCTCTAACGCAGTAAATGTTGTTGTCCACATCCACAGTGAAGGGAACAACGGGAAGGGGAACTaGGCAGGCTCCGGAGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: MIVSNAVNVVVHIHSEGNNGKGN*AGSGER Trigger: CCGCTCTCCGGAGCCTGCCCAGTTCCCCTTCCCGTT...GTTCCCTTCACTGTGGATGTGGACAACAACATTTACTGCGTTAGAGACTATCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| CDS-3UTR CCA 90 bp | GATGGGACGGGCACAGGAGGCACATTTTGGTGCAAACACCGTATGATAGTCTCTACCAGGAAGTCCTCCTaGCAGTACACTTTCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: DGTGTGGTFWCKHRMIVSTRKSS*QYTFSP Trigger: GGGTGAGAAAGTGTACTGCCAGGAGGACTTCCTGGT...AGAGACTATCATACGGTGTTTGCACCAAAATGTGCCTCCTGTGCCCGTCCCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140911.4 |
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| CDS-3UTR CCA 90 bp | TGTGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAAGACCCTCCAAACAGGAGGCACATTTTaGTGCAAACACCGTATGATA | + |
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Preference number: 4 (lower is better) Translates to: CGRTQIRHLSPTSSKTLQTGGTF*CKHRMI Trigger: TATCATACGGTGTTTGCACCAAAATGTGCCTCCTGT...TTGGAGGGTCTTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR TCA 90 bp | AGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGGCCAAATCGTGGTATTTCTGTCCACATCCACAGTaGAGGGAACCCCATCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: RGGELQLKIPIKAKSWYFCPHPQ*REPHPS Trigger: GCTTGGATGGGGTTCCCTTCACTGTGGATGTGGACA...GAAATACCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS TCA 90 bp | CGCCGGGCCGACGCCGGGCGGCAGCAGGTCTGCACAGGCGCCCGCTaGGCCACGGGAACCCAGGCTGGACACGCTGGAGCGCGCGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: RRADAGRQQVCTGAR*ATGTQAGHAGARAA Trigger: GGCAGCGCGCGCTCCAGCGTGTCCAGCCTGGGTTCCCGTGGCTCAGCGGGCGCCTGTGCAGACCTGCTGCCGCCCGGCGTCGGCCCGGCG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038537.9 ENSMUST00000140911.4 |
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| CDS-3UTR CAA 90 bp | TGGTCGCACACAAATAAGGCACCTGTCCCCCACCAGCTCCAAGACCCTCCAATCCCACACACGCTACACTaGTCAGCTGTTTGCTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: WSHTNKAPVPHQLQDPPIPHTLH*SAVCWN Trigger: GTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGG...GATTGGAGGGTCTTGGAGCTGGTGGGGGACAGGTGCCTTATTTGTGTGCGACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS-3UTR CAA 90 bp | CAGAGAGGAGGAGAACTGCAGCTGAAAATACCCATCAAGGCCAAATCGTGGTATACACTTGTCAGCTGTTaGCTGGAACCCGGAGTACAG | + |
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Preference number: 5 (lower is better) Translates to: QRGGELQLKIPIKAKSWYTLVSC*LEPGVQ Trigger: CTGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGT...ATACCACGATTTGGCCTTGATGGGTATTTTCAGCTGCAGTTCTCCTCCTCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS TCA 72 bp | CCTTCCCACGGAGCCGTCTCCCACAGGAGTCACAGATaGAGCAGTCGGTGTGATACAGGCTCCCCATCGCCT | + |
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Preference number: 6 (lower is better) Translates to: PSHGAVSHRSHR*SSRCDTGSPSP Trigger: AGGCGATGGGGAGCCTGTATCACACCGACTGCTTCATCTGTGACTCCTGTGGGAGACGGCTCCGTGGGAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038537.9 ENSMUST00000140911.4 |
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| CDS TCA 72 bp | ACGCCTGCCTCGCTCCGTAGATGCCAAGGCCACACTTaGTACAAATGCCAAAGTAGTCTCGCGCCGTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: TPASLRRCQGHT*YKCQSSLAPCA Trigger: CGCGCACGGCGCGAGACTACTTTGGCATTTGTATCAAGTGTGGCCTTGGCATCTACGGAGCGAGGCAGGCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038537.9 ENSMUST00000140911.4 |
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| CDS GCA 72 bp | ATGAGGTGTCCACACACGCTACACTTGTCAGCTGTTTaGTGGAACCCGGAGTACAGGAAGTCCTCCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: MRCPHTLHLSAV*WNPEYRKSSWQ Trigger: CTGCCAGGAGGACTTCCTGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGGACACCTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS CCA 72 bp | AGGTGTCCACACACGCTACACTTGTCAGCTGTTTGCTaGAACCCGGAGTACAGGAAGTCCTCCTGGCAGTAC | + |
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Preference number: 6 (lower is better) Translates to: RCPHTLHLSAVC*NPEYRKSSWQY Trigger: GTACTGCCAGGAGGACTTCCTGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGGACACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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| CDS CAA 72 bp | GATGAGGTGTCCACACACGCTACACTTGTCAGCTGTTaGCTGGAACCCGGAGTACAGGAAGTCCTCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: DEVSTHATLVSC*LEPGVQEVLLA Trigger: TGCCAGGAGGACTTCCTGTACTCCGGGTTCCAGCAAACAGCTGACAAGTGTAGCGTGTGTGGACACCTCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038537.9 |
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