RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WRN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031583

Ensembl transcript IDs: ENSMUST00000033990.7, ENSMUST00000033991.13, ENSMUST00000211498.2

Found 345 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTAAATaGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTC +
Preference number: 1 (lower is better)
Translates to: SCFCNWSPCPLSLFK*KLMSPWLGWCTDTV
Trigger: GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR-3UTR GCA 90 bp ATGAAGCAGACGTTTTCCTGCAGCAGGCCACCGCAATCAGCAGGGACCCGAGCGCCCTGGCTGGGCTGGTaGACTGATACTGTCATACAG +
Preference number: 2 (lower is better)
Translates to: MKQTFSCSRPPQSAGTRAPWLGW*TDTVIQ
Trigger: CTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGG...CGCTCGGGTCCCTGCTGATTGCGGTGGCCTGCTGCAGGAAAACGTCTGCTTCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR-3UTR GCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCACGACTTCACAGTCTATaGTGCACTCCGGGTCTCAGA +
Preference number: 2 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQARLHSL*CTPGLR
Trigger: TCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCG...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR-3UTR TCA 90 bp CCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCACCAGGCTCGACGTTTAGGTaGGCTTCACTTTGGACTTTA +
Preference number: 2 (lower is better)
Translates to: PSGQGKLPRCPVKDTCSPGSTFR*ASLWTL
Trigger: TAAAGTCCAAAGTGAAGCTCACCTAAACGTCGAGCC...TGGTGAACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR-3UTR TCA 90 bp CCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCACCAACGAGGGAGTCTGGCTaGTTGAAAAAGGAAATGGCT +
Preference number: 2 (lower is better)
Translates to: PSGQGKLPRCPVKDTCSPTRESG*LKKEMA
Trigger: AGCCATTTCCTTTTTCAATCAGCCAGACTCCCTCGT...TGGTGAACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR-3UTR TCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGGGCTCGACGTTTAGGTaGGCTTCACTTTGGACTTTA +
Preference number: 2 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRGSTFR*ASLWTL
Trigger: TAAAGTCCAAAGTGAAGCTCACCTAAACGTCGAGCC...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR-3UTR GCA 90 bp GAAAAGCCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCCAACACACACTGCTaGAAGAAGAGAAAGACTGCA +
Preference number: 2 (lower is better)
Translates to: EKPSGQGKLPRCPVKDTCSNTHC*KKRKTA
Trigger: TGCAGTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGA...ACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGGCTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR-3UTR GCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCATCCAACACACACTGCTaGAAGAAGAGAAAGACTGCA +
Preference number: 2 (lower is better)
Translates to: LMSPWLGWCTDTVIQASASNTHC*KKRKTA
Trigger: TGCAGTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGA...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR-3UTR TCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGGCTCGACGTTTAGGTaGGCTTCACTTTGGACTTTA +
Preference number: 2 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRGSTFR*ASLWTL
Trigger: TAAAGTCCAAAGTGAAGCTCACCTAAACGTCGAGCC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR-3UTR CCA 90 bp CCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCACCAGAATACGAGGGAGTCTaGCTGATTGAAAAAGGAAAT +
Preference number: 2 (lower is better)
Translates to: PSGQGKLPRCPVKDTCSPEYEGV*LIEKGN
Trigger: ATTTCCTTTTTCAATCAGCCAGACTCCCTCGTATTC...TGGTGAACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR-3UTR GCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGCTTCACAGTCTATGCTaGACTCCGGGTCTCAGAAGG +
Preference number: 2 (lower is better)
Translates to: ESKDRLYLHICPYATTDLLHSLC*TPGLRR
Trigger: CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAG...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR-3UTR TCA 90 bp AGGATGGCCCCATTTCATTTCTGTAAATGTTCTCGTTGTGTGGATGAGTTCAGGTTTTTAAATGGAAGCTaGTGTCTCCCTGGCTGGGCT +
Preference number: 2 (lower is better)
Translates to: RMAPFHFCKCSRCVDEFRFLNGS*CLPGWA
Trigger: AGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAA...CCTGAACTCATCCACACAACGAGAACATTTACAGAAATGAAATGGGGCCATCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR-3UTR GCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTTGTCATACAGGCATCTaGATAAGAAAGCAAAGACCG +
Preference number: 2 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFCHTGI*IRKQRP
Trigger: CGGTCTTTGCTTTCTTATGCAGATGCCTGTATGACA...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR TCA 72 bp GGAGTCCTTGTCCGCTTTCCCTTTTTAAATGGAAGCTaGTGTCTCCCTGGCTGGGCTGGTGCACTGATACTG +
Preference number: 3 (lower is better)
Translates to: GVLVRFPFLNGS*CLPGWAGALIL
Trigger: CAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAGGGAAAGCGGACAAGGACTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR-3UTR CAA 90 bp ATGAAGCAGACGTTTTCCTGCAGCAGGCCACCGCAATCAGCAGGGACCCGAGCGTGGCATCTTCAAATATaGAAGGCACTCACAACAATT +
Preference number: 3 (lower is better)
Translates to: MKQTFSCSRPPQSAGTRAWHLQI*KALTTI
Trigger: AATTGTTGTGAGTGCCTTCAATATTTGAAGATGCCA...CGCTCGGGTCCCTGCTGATTGCGGTGGCCTGCTGCAGGAAAACGTCTGCTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR GCA 72 bp GAAGGCAATCGGAAAGGAAGCCGACTTCACAGTCTATaGTGCACTCCGGGTCTCAGAAGGTTCAGATACTGT +
Preference number: 3 (lower is better)
Translates to: EGNRKGSRLHSL*CTPGLRRFRYC
Trigger: ACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATTGCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR CCA 72 bp CCGCTTTCCCTTTTTAAATGGAAGCTGATGTCTCCCTaGCTGGGCTGGTGCACTGATACTGTCATACAGGCA +
Preference number: 3 (lower is better)
Translates to: PLSLFKWKLMSP*LGWCTDTVIQA
Trigger: TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAGGGAAAGCGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR CCA 72 bp TGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTAAATaGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACT +
Preference number: 3 (lower is better)
Translates to: CNWSPCPLSLFK*KLMSPWLGWCT
Trigger: AGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAGGGAAAGCGGACAAGGACTCCAGTTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR TCA 72 bp ATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTaGTACTGTCATACAGGCATCTGCATAAGAAAGCAA +
Preference number: 3 (lower is better)
Translates to: MEADVSLAGLVH*YCHTGICIRKQ
Trigger: TTGCTTTCTTATGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR GCA 72 bp CATTTCCAACACACACTGCTGCAAGAAGAGAAAGACTaGAACCTGACAGTGACACGGGTTCGGAAGGCAATC +
Preference number: 3 (lower is better)
Translates to: HFQHTLLQEEKD*NLTVTRVRKAI
Trigger: GATTGCCTTCCGAACCCGTGTCACTGTCAGGTTGCAGTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
3UTR CCA 72 bp GTGTGGATGAGTTCAGGAGAAGAAGAGCCTGGAGTCTaGTCTACTGTATTCAGTCTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: VWMSSGEEEPGV*STVFSLCVCVC
Trigger: ACACACACACACACACAGACTGAATACAGTAGACCAGACTCCAGGCTCTTCTTCTCCTGAACTCATCCACAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR CCA 72 bp TCTCGTTGTGTGGATGAGTTCAGGAGAAGAAGAGCCTaGAGTCTGGTCTACTGTATTCAGTCTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: SRCVDEFRRRRA*SLVYCIQSVCV
Trigger: CACACACACAGACTGAATACAGTAGACCAGACTCCAGGCTCTTCTTCTCCTGAACTCATCCACACAACGAGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR CCA 72 bp TGGCCCCATTTCATTTCTGTAAATGTTCTCGTTGTGTaGATGAGTTCAGGAGAAGAAGAGCCTGGAGTCTGG +
Preference number: 3 (lower is better)
Translates to: WPHFISVNVLVV*MSSGEEEPGVW
Trigger: CCAGACTCCAGGCTCTTCTTCTCCTGAACTCATCCACACAACGAGAACATTTACAGAAATGAAATGGGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR TCA 72 bp AGGCACAGAGAAATAGAAGCAACTGGAGATTATGCGTaGTATACGGAAAGCTACCTTCTGGTAATAGAAAGC +
Preference number: 3 (lower is better)
Translates to: RHREIEATGDYA*YTESYLLVIES
Trigger: GCTTTCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAATCTCCAGTTGCTTCTATTTCTCTGTGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR TCA 72 bp AGTGTGTATCTGAAGGGACGGCCATGGGCTCTTCCTTaGCTACATTACTATATATGCTATATTATAACGTGT +
Preference number: 3 (lower is better)
Translates to: SVYLKGRPWALP*LHYYICYIITC
Trigger: ACACGTTATAATATAGCATATATAGTAATGTAGTCAAGGAAGAGCCCATGGCCGTCCCTTCAGATACACACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR GCA 72 bp TTTAAGGCACAGAGAAATAGAAGCAACTGGAGATTATaGGTGATATACGGAAAGCTACCTTCTGGTAATAGA +
Preference number: 3 (lower is better)
Translates to: FKAQRNRSNWRL*VIYGKLPSGNR
Trigger: TCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAATCTCCAGTTGCTTCTATTTCTCTGTGCCTTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR CCA 72 bp TGCAGAAAATGCATAGAATTTAGTTGTTTCTGTAACTaGAGTCCTTGTCCGCTTTCCCTTTTTAAATGGAAG +
Preference number: 3 (lower is better)
Translates to: CRKCIEFSCFCN*SPCPLSLFKWK
Trigger: CTTCCATTTAAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCATTTTCTGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGCCGGCTTTCACCGCCTaGGCTAAGTGCATGCCGGCT +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRPAFTA*AKCMPA
Trigger: AGCCGGCATGCACTTAGCCCAGGCGGTGAAAGCCGG...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGCCGGCTTTCACCGCCTaGGCTAAGTGCATGCCGGCT +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQPAFTA*AKCMPA
Trigger: AGCCGGCATGCACTTAGCCCAGGCGGTGAAAGCCGG...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGCATGCCGGCTGCTGTaGGAGGCAGGAGCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRACRLL*EAGACS
Trigger: AGAACAGGCTCCTGCCTCTCACAGCAGCCGGCATGC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCAGCTGCCGGTATCAGCTaGGGGCACATTTCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASAAAGIS*GHISFG
Trigger: GCCAAAGGAAATGTGCCCTCAGCTGATACCGGCAGC...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAGCTCTTGGGCTGAGATaGCAGGTTCTAAGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAALGLR*QVLRGW
Trigger: CCAGCCCCTTAGAACCTGCCATCTCAGCCCAAGAGC...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGCCGGCTTTCACCGCCTaGGCTAAGTGCATGCCGGCT +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTPAFTA*AKCMPA
Trigger: AGCCGGCATGCACTTAGCCCAGGCGGTGAAAGCCGG...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAGCATGCCGGCTGCTGTaGGAGGCAGGAGCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLACRLL*EAGACS
Trigger: AGAACAGGCTCCTGCCTCTCACAGCAGCCGGCATGC...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGAGGCTCGGAGGAGACTaGGAACTGGCTTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRRLGGD*ELASPS
Trigger: GCTTGGAGAAGCCAGTTCGCAGTCTCCTCCGAGCCT...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCAGCTCTCACAACTCTCTaGAGAGCTGGGGAAACGCCT +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASAALTTL*RAGETP
Trigger: AGGCGTTTCCCCAGCTCTGCAGAGAGTTGTGAGAGC...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGCGAGCGTCCAGCTCTTaGGCTGAGATGGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRRASSS*AEMAGS
Trigger: AGAACCTGCCATCTCAGCCCAAGAGCTGGACGCTCG...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAAACTCTCTGCAGAGCTaGGGAAACGCCTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQANSLQS*GNASSC
Trigger: GCAGGAAGAGGCGTTTCCCCAGCTCTGCAGAGAGTT...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAATCATGGCCCCACTCTaGAATGCAGTGAGCCTCATC +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAIMAPL*NAVSLI
Trigger: GATGAGGCTCACTGCATTTCAGAGTGGGGCCATGAT...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGCTGCCGGTATCAGCTaGGGGCACATTTCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTAAGIS*GHISFG
Trigger: GCCAAAGGAAATGTGCCCTCAGCTGATACCGGCAGC...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCACCGGATGGAAGAGCTTaGAGTAGCGGAGAGTGCAAT +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASAPDGRA*SSGECN
Trigger: ATTGCACTCTCCGCTACTGCAAGCTCTTCCATCCGG...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAAGGCTCGGAGGAGACTaGGAACTGGCTTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRRLGGD*ELASPS
Trigger: GCTTGGAGAAGCCAGTTCGCAGTCTCCTCCGAGCCT...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCACCAACAGAGCAGCTTTaGCTTCAGAGACACCGTCGA +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAPTEQL*LQRHRR
Trigger: TCGACGGTGTCTCTGAAGGCAAAGCTGCTCTGTTGG...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCACCAGTGCAGGTGATCTaGGGGTCTTTCAGGTTTAAG +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAPVQVI*GSFRFK
Trigger: CTTAAACCTGAAAGACCCTCAGATCACCTGCACTGG...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp ATGAAGCAGACGTTTTCCTGCAGCAGGCCACCGCAATCAGCAGGGACCCGAGCGGTAGCTACAACACACTaGATTTCATCTCTCAGGAAC +
Preference number: 4 (lower is better)
Translates to: MKQTFSCSRPPQSAGTRAVATTH*ISSLRN
Trigger: GTTCCTGAGAGATGAAATTCAGTGTGTTGTAGCTAC...CGCTCGGGTCCCTGCTGATTGCGGTGGCCTGCTGCAGGAAAACGTCTGCTTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR TCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGGAATAGAGTGTATGTaGCGGCCACAGACTGGGGGA +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTGIECM*RPQTGG
Trigger: TCCCCCAGTCTGTGGCCGTCACATACACTCTATTCC...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCGCATGCCGGCTGCTGTaGGAGGCAGGAGCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCACRLL*EAGACS
Trigger: AGAACAGGCTCCTGCCTCTCACAGCAGCCGGCATGC...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGCCGGATGGAAGAGCTTaGAGTAGCGGAGAGTGCAAT +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRPDGRA*SSGECN
Trigger: ATTGCACTCTCCGCTACTGCAAGCTCTTCCATCCGG...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAGGATGTGTTAAAGTCTaGTGGAGCCCAGAGCAAGTG +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAGCVKV*WSPEQV
Trigger: CACTTGCTCTGGGCTCCAGCAGACTTTAACACATCC...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAGAGGAAGACGCCCATTaGTTCCCATTTCCAACCATG +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAEEDAH*FPFPTM
Trigger: CATGGTTGGAAATGGGAACCAATGGGCGTCTTCCTC...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCAGGTTCCGGCAATAAATaGTCCTCTTCTTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASAGSGNK*SSSSCS
Trigger: GGAGCAGGAAGAAGAGGACCATTTATTGCCGGAACC...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGTGTGGCCCAAAGTCTTaGGATGCGTCCTCTGAGTTG +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQCGPKS*DASSEL
Trigger: CAACTCAGAGGACGCATCCCAAGACTTTGGGCCACA...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGCACTCTGAAATGCAGTaGGCCTCATCCACAGCAATG +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRHSEMQ*ASSTAM
Trigger: CATTGCTGTGGATGAGGCTCACTGCATTTCAGAGTG...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTATCATGGCCCCACTCTaGAATGCAGTGAGCCTCATC +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTIMAPL*NAVSLI
Trigger: GATGAGGCTCACTGCATTTCAGAGTGGGGCCATGAT...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGATCATGGCCCCACTCTaGAATGCAGTGAGCCTCATC +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTIMAPL*NAVSLI
Trigger: GATGAGGCTCACTGCATTTCAGAGTGGGGCCATGAT...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGGCCCAGCATCCTGAATaGACTTCTGAAATCATGGCC +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQAQHPE*TSEIMA
Trigger: GGCCATGATTTCAGAAGTTCATTCAGGATGCTGGGC...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGCAAATCCAGTGCAGGTaGTCTGAGGGTCTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQQIQCR*SEGLSG
Trigger: ACCTGAAAGACCCTCAGATCACCTGCACTGGATTTG...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGCACAGACTGGGGGAGTaGGCAGTCTTTCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRHRLGE*AVFLFH
Trigger: ATGGAAAAGAAAGACTGCTCACTCCCCCAGTCTGTG...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp GAAAAGCCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTGGTCCTCTTCTTCCTaGTCCTCTTTGATGGCTTCA +
Preference number: 4 (lower is better)
Translates to: EKPSGQGKLPRCPVKDTCWSSSS*SSLMAS
Trigger: TGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCA...ACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGGCTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCGGCCCCACTCTGAAATaGAGTGAGCCTCATCCACAG +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVGPTLK*SEPHPQ
Trigger: CTGTGGATGAGGCTCACTGCATTTCAGAGTGGGGCC...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAGGCCCCACTCTGAAATaGAGTGAGCCTCATCCACAG +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLGPTLK*SEPHPQ
Trigger: CTGTGGATGAGGCTCACTGCATTTCAGAGTGGGGCC...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCACAGCGTGGTATGTTCTaGAGGCTAAGTTCAGTTTCC +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASAQRGMF*RLSSVS
Trigger: GGAAACTGAACTTAGCCTGCAGAACATACCACGCTG...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGACCAACAGAGCAGCTTTaGCTTCAGAGACACCGTCGA +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRPTEQL*LQRHRR
Trigger: TCGACGGTGTCTCTGAAGGCAAAGCTGCTCTGTTGG...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCGCTCTCACAACTCTCTaGAGAGCTGGGGAAACGCCT +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVALTTL*RAGETP
Trigger: AGGCGTTTCCCCAGCTCTGCAGAGAGTTGTGAGAGC...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGGAGGAAGACGCCCATTaGTTCCCATTTCCAACCATG +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRREEDAH*FPFPTM
Trigger: CATGGTTGGAAATGGGAACCAATGGGCGTCTTCCTC...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGGGTTCCGGCAATAAATaGTCCTCTTCTTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQGSGNK*SSSSCS
Trigger: GGAGCAGGAAGAAGAGGACCATTTATTGCCGGAACC...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCATTGGACAGCTCAAGCTaGAGGACTTGGTCTTCCATT +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASALDSSS*RTWSSI
Trigger: AATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAA...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATTGGACAGCTCAAGCTaGAGGACTTGGTCTTCCATT +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQALDSSS*RTWSSI
Trigger: AATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAA...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGGGCAATGATTCAGCCTaGGCCTGCAATTATCACAGC +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQGNDSA*ACNYHS
Trigger: GCTGTGATAATTGCAGGCCCAGGCTGAATCATTGCC...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCTTGCTTCCACCAGCCTaGCATATAGCCCAGTCCGAG +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVLLPPA*HIAQSE
Trigger: CTCGGACTGGGCTATATGCCAGGCTGGTGGAAGCAA...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGGTTCCTTGTGAGGTTTaGCACTGGAAAGGAGGTCTG +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQVPCEV*HWKGGL
Trigger: CAGACCTCCTTTCCAGTGCCAAACCTCACAAGGAAC...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGAATCACAAGGAGGCTaGGTTCTGCTGTCGGAACCA +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRESQGG*VLLSEP
Trigger: TGGTTCCGACAGCAGAACCCAGCCTCCTTGTGATTC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGAATCACAAGGAGGCTaGGTTCTGCTGTCGGAACCA +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTESQGG*VLLSEP
Trigger: TGGTTCCGACAGCAGAACCCAGCCTCCTTGTGATTC...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGAATCACAAGGAGGCTaGGTTCTGCTGTCGGAACCA +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTESQGG*VLLSEP
Trigger: TGGTTCCGACAGCAGAACCCAGCCTCCTTGTGATTC...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAAGCCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCCCTGGGGGAAAACTaGCATGGAAGAAATGTGAAA +
Preference number: 4 (lower is better)
Translates to: EKPSGQGKLPRCPVKDTCSLGEN*HGRNVK
Trigger: TTTCACATTTCTTCCATGTCAGTTTTCCCCCAGGGA...ACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGGCTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR TCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTCACTCTGAAATGCAGTaGGCCTCATCCACAGCAATG +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTHSEMQ*ASSTAM
Trigger: CATTGCTGTGGATGAGGCTCACTGCATTTCAGAGTG...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGCCCAGCATCCTGAATaGACTTCTGAAATCATGGCC +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTAQHPE*TSEIMA
Trigger: GGCCATGATTTCAGAAGTTCATTCAGGATGCTGGGC...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGCCAGTGCAGGTGATCTaGGGGTCTTTCAGGTTTAAG +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTPVQVI*GSFRFK
Trigger: CTTAAACCTGAAAGACCCTCAGATCACCTGCACTGG...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGCAAATCCAGTGCAGGTaGTCTGAGGGTCTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTQIQCR*SEGLSG
Trigger: ACCTGAAAGACCCTCAGATCACCTGCACTGGATTTG...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTCAGCTATGAGATGGTaGGAAAGGGTCTTCCACCAA +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRSAMRW*ERVFHQ
Trigger: TTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGA...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCACAATCGCCATGTGGATaGGGTACGTGTCTAAGTTTT +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAQSPCG*GTCLSF
Trigger: AAAACTTAGACACGTACCTCATCCACATGGCGATTG...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGATCACTGCGACTCTaGTTCTTTTCCCTGGCTTGT +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTGSLRL*FFSLAC
Trigger: ACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCC...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGGATCACTGCGACTCTaGTTCTTTTCCCTGGCTTGT +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRGSLRL*FFSLAC
Trigger: ACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGTGGTCCTCTTCTTCCTaGTCCTCTTTGATGGCTTCA +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQWSSSS*SSLMAS
Trigger: TGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCA...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGCACCAACTTTCTGCTTaGTCCTTTCCAGCACCAAAG +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQHQLSA*SFPAPK
Trigger: CTTTGGTGCTGGAAAGGAGCAAGCAGAAAGTTGGTG...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCCCAACAGAGCAGCTTTaGCTTCAGAGACACCGTCGA +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVPTEQL*LQRHRR
Trigger: TCGACGGTGTCTCTGAAGGCAAAGCTGCTCTGTTGG...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGTCTGCTTCTTTTCCCTaGCTTGTATATGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTSASFP*LVYGRP
Trigger: TGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGA...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTACGCAGAAGTTTCCACTaGTCCCCTTCAATCCCAACC +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLRRSFH*SPSIPT
Trigger: GGTTGGGATTGAAGGGGACCAGTGGAAACTTCTGCG...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp CCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCACCATCAAGCTGGAGGACTTaGTCTTCCATTAAGGAAATG +
Preference number: 4 (lower is better)
Translates to: PSGQGKLPRCPVKDTCSPSSWRT*SSIKEM
Trigger: CATTTCCTTAATGGAAGACCAAGTCCTCCAGCTTGA...TGGTGAACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGGCAATGATTCAGCCTaGGCCTGCAATTATCACAGC +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRGNDSA*ACNYHS
Trigger: GCTGTGATAATTGCAGGCCCAGGCTGAATCATTGCC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTACAGCAGACAGTAGCTaGAATGCTTGTGGCCCAAAG +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTTADSS*NACGPK
Trigger: CTTTGGGCCACAAGCATTCCAGCTACTGTCTGCTGT...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCCGAGCGTCCAGCTCTTaGGCTGAGATGGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCRASSS*AEMAGS
Trigger: AGAACCTGCCATCTCAGCCCAAGAGCTGGACGCTCG...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACTTGCTTCCACCAGCCTaGCATATAGCCCAGTCCGAG +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDLLPPA*HIAQSE
Trigger: CTCGGACTGGGCTATATGCCAGGCTGGTGGAAGCAA...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAATCTCAATCGCCATGTaGATGAGGTACGTGTCTAAG +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAISIAM*MRYVSK
Trigger: CTTAGACACGTACCTCATCCACATGGCGATTGAGAT...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTACACTCTGAAATGCAGTaGGCCTCATCCACAGCAATG +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLHSEMQ*ASSTAM
Trigger: CATTGCTGTGGATGAGGCTCACTGCATTTCAGAGTG...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCCAAATCCAGTGCAGGTaGTCTGAGGGTCTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVQIQCR*SEGLSG
Trigger: ACCTGAAAGACCCTCAGATCACCTGCACTGGATTTG...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTTCAGCTATGAGATGGTaGGAAAGGGTCTTCCACCAA +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTSAMRW*ERVFHQ
Trigger: TTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGA...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACCCGGATGGAAGAGCTTaGAGTAGCGGAGAGTGCAAT +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDPDGRA*SSGECN
Trigger: ATTGCACTCTCCGCTACTGCAAGCTCTTCCATCCGG...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAGATTCAGCCTGGGCCTaGAATTATCACAGCATTTTT +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQADSAWA*NYHSIF
Trigger: AAAAATGCTGTGATAATTGCAGGCCCAGGCTGAATC...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCAGATTCAGCCTGGGCCTaGAATTATCACAGCATTTTT +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASADSAWA*NYHSIF
Trigger: AAAAATGCTGTGATAATTGCAGGCCCAGGCTGAATC...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGACACCAACTTTCTGCTTaGTCCTTTCCAGCACCAAAG +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRHQLSA*SFPAPK
Trigger: CTTTGGTGCTGGAAAGGAGCAAGCAGAAAGTTGGTG...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACAGCGTGTTTCTGCCTTaGTTCCACCAGCCTGGCATA +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDSVFLP*FHQPGI
Trigger: TATGCCAGGCTGGTGGAAGCAAGGCAGAAACACGCT...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATCAGACACACACAACTaGATCACTGCGACTCTGCTT +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRSDTHN*ITATLL
Trigger: AAGCAGAGTCGCAGTGATCCAGTTGTGTGTGTCTGA...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCAACTTCAACTTTTCATTaGCAACATCCGTCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASATSTFH*QHPSAP
Trigger: TGGAGCTGACGGATGTTGCCAATGAAAAGTTGAAGT...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGCAGCATAAGCATCAGTaGCTGCATACAGTTTCTGGT +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQQHKHQ*LHTVSG
Trigger: ACCAGAAACTGTATGCAGCCACTGATGCTTATGCTG...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCGGCAATGATTCAGCCTaGGCCTGCAATTATCACAGC +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVGNDSA*ACNYHS
Trigger: GCTGTGATAATTGCAGGCCCAGGCTGAATCATTGCC...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAGCTCTTGGGCTGAGATaGCAGGTTCTAAGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLALGLR*QVLRGW
Trigger: CCAGCCCCTTAGAACCTGCCATCTCAGCCCAAGAGC...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCACTTTCTTTTTGGTCTTaGCCATTGATGATGAGCTGC +
Preference number: 4 (lower is better)
Translates to: LMSPWLGWCTDTVIQASALSFWS*PLMMSC
Trigger: GCAGCTCATCATCAATGGCCAAGACCAAAAAGAAAG...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATCCCTGGGGGAAAACTaGCATGGAAGAAATGTGAAA +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRSLGEN*HGRNVK
Trigger: TTTCACATTTCTTCCATGTCAGTTTTCCCCCAGGGA...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR TCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGCCAAATTTCTGCAAGTaGCAGGAAAACGATTGGCTA +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRPNFCK*QENDWL
Trigger: TAGCCAATCGTTTTCCTGTCACTTGCAGAAATTTGG...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTAACGGCTTTAGATCCTaGAGGATGTTCCCTGTTTTC +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTNGFRS*RMFPVF
Trigger: GAAAACAGGGAACATCCTTCAGGATCTAAAGCCGTT...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTATCAGCTATGAGATGGTaGGAAAGGGTCTTCCACCAA +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLSAMRW*ERVFHQ
Trigger: TTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGA...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACCACAGACTGGGGGAGTaGGCAGTCTTTCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDHRLGE*AVFLFH
Trigger: ATGGAAAAGAAAGACTGCTCACTCCCCCAGTCTGTG...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAGGAATAGAGTGTATGTaGCGGCCACAGACTGGGGGA +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLGIECM*RPQTGG
Trigger: TCCCCCAGTCTGTGGCCGTCACATACACTCTATTCC...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCACCAGAAACAAGTAACATTTaGTCTCAGACACACACAACT +
Preference number: 4 (lower is better)
Translates to: PSGQGKLPRCPVKDTCSPETSNI*SQTHTT
Trigger: AGTTGTGTGTGTCTGAGAGCAAATGTTACTTGTTTC...TGGTGAACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGGAAATTACTCCAATTaGTGCAGCGGATGGACTTGT +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRGNYSN*CSGWTC
Trigger: ACAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGTTGAGGCAATTAATTTaGTTTGCGTTGGGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTLRQLI*FALGSG
Trigger: GCCGGAACCCAACGCAAAGCAAATTAATTGCCTCAA...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACGGTTCCGGCAATAAATaGTCCTCTTCTTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDGSGNK*SSSSCS
Trigger: GGAGCAGGAAGAAGAGGACCATTTATTGCCGGAACC...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGCTAGAGTCAAGTTGCTaGAGTAGATCCAAGTTACCA +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQLESSC*SRSKLP
Trigger: TGGTAACTTGGATCTACTCCAGCAACTTGACTCTAG...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGAACTTCTGAAATCATaGCCCCACTCTGAAATGCAG +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTELLKS*PHSEMQ
Trigger: CTGCATTTCAGAGTGGGGCCATGATTTCAGAAGTTC...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGACAATAGATGATGGTTaGACCTTCAAATTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRTIDDG*TFKFPG
Trigger: GCCTGGGAATTTGAAGGTCCAACCATCATCTATTGT...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AGGATGGCCCCATTTCATTTCTGTAAATGTTCTCGTTGTGTGGATGAGTTCAGGTTGCTTCCACCAGCCTaGCATATAGCCCAGTCCGAG +
Preference number: 4 (lower is better)
Translates to: RMAPFHFCKCSRCVDEFRLLPPA*HIAQSE
Trigger: CTCGGACTGGGCTATATGCCAGGCTGGTGGAAGCAA...CCTGAACTCATCCACACAACGAGAACATTTACAGAAATGAAATGGGGCCATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCTGTGAGGTTTGGCACTaGAAAGGAGGTCTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVCEVWH*KGGLSE
Trigger: TTCAGACAGACCTCCTTTCCAGTGCCAAACCTCACA...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACGTTCCTTGTGAGGTTTaGCACTGGAAAGGAGGTCTG +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDVPCEV*HWKGGL
Trigger: CAGACCTCCTTTCCAGTGCCAAACCTCACAAGGAAC...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAAACTCTCTGCAGAGCTaGGGAAACGCCTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLNSLQS*GNASSC
Trigger: GCAGGAAGAGGCGTTTCCCCAGCTCTGCAGAGAGTT...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGAACTCTCTGCAGAGCTaGGGAAACGCCTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLNSLQS*GNASSC
Trigger: GCAGGAAGAGGCGTTTCCCCAGCTCTGCAGAGAGTT...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGCCAAATTTCTGCAAGTaGCAGGAAAACGATTGGCTA +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTPNFCK*QENDWL
Trigger: TAGCCAATCGTTTTCCTGTCACTTGCAGAAATTTGG...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTCTAATACAGAATGGATaGCTTTCCACTGAACCGGTT +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTLIQNG*LSTEPV
Trigger: AACCGGTTCAGTGGAAAGTCATCCATTCTGTATTAG...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGTCGAAGGACAATAGATaGTGGTTGGACCTTCAAATT +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQSKDNR*WLDLQI
Trigger: AATTTGAAGGTCCAACCATCATCTATTGTCCTTCGA...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGTAGCTACAACACACTaGATTTCATCTCTCAGGAAC +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTVATTH*ISSLRN
Trigger: GTTCCTGAGAGATGAAATTCAGTGTGTTGTAGCTAC...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATAAGCATCAGTGGCTaGATACAGTTTCTGGTCCTC +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVISISG*IQFLVL
Trigger: GAGGACCAGAAACTGTATGCAGCCACTGATGCTTAT...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACTGGTCCTCTTCTTCCTaGTCCTCTTTGATGGCTTCA +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDWSSSS*SSLMAS
Trigger: TGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCA...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCGGATGTGTTAAAGTCTaGTGGAGCCCAGAGCAAGTG +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCGCVKV*WSPEQV
Trigger: CACTTGCTCTGGGCTCCAGCAGACTTTAACACATCC...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACCACCAACTTTCTGCTTaGTCCTTTCCAGCACCAAAG +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDHQLSA*SFPAPK
Trigger: CTTTGGTGCTGGAAAGGAGCAAGCAGAAAGTTGGTG...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGCTCTCCAAATTAGACTaGTTGGTAGTTAATCCAGCT +
Preference number: 4 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQLSKLD*LVVNPA
Trigger: AGCTGGATTAACTACCAAGCAGTCTAATTTGGAGAG...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGAGCGTGTTTCTGCCTTaGTTCCACCAGCCTGGCATA +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLSVFLP*FHQPGI
Trigger: TATGCCAGGCTGGTGGAAGCAAGGCAGAAACACGCT...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAAGCGTGTTTCTGCCTTaGTTCCACCAGCCTGGCATA +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLSVFLP*FHQPGI
Trigger: TATGCCAGGCTGGTGGAAGCAAGGCAGAAACACGCT...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGCGCAGAAGTTTCCACTaGTCCCCTTCAATCCCAACC +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLRRSFH*SPSIPT
Trigger: GGTTGGGATTGAAGGGGACCAGTGGAAACTTCTGCG...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTTCAAGCTGGAGGACTTaGTCTTCCATTAAGGAAATG +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTSSWRT*SSIKEM
Trigger: CATTTCCTTAATGGAAGACCAAGTCCTCCAGCTTGA...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AGGATGGCCCCATTTCATTTCTGTAAATGTTCTCGTTGTGTGGATGAGTTCAGGTGTGGCCCAAAGTCTTaGGATGCGTCCTCTGAGTTG +
Preference number: 4 (lower is better)
Translates to: RMAPFHFCKCSRCVDEFRCGPKS*DASSEL
Trigger: CAACTCAGAGGACGCATCCCAAGACTTTGGGCCACA...CCTGAACTCATCCACACAACGAGAACATTTACAGAAATGAAATGGGGCCATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGTGTGGCCCAAAGTCTTaGGATGCGTCCTCTGAGTTG +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLCGPKS*DASSEL
Trigger: CAACTCAGAGGACGCATCCCAAGACTTTGGGCCACA...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCACAGCAGACAGTAGCTaGAATGCTTGTGGCCCAAAG +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCTADSS*NACGPK
Trigger: CTTTGGGCCACAAGCATTCCAGCTACTGTCTGCTGT...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGATGTTGCGTCGTTTCTaGAGATACAGGATTAGAACT +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRMLRRF*RYRIRT
Trigger: AGTTCTAATCCTGTATCTCCAGAAACGACGCAACAT...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACTGTGAGGTTTGGCACTaGAAAGGAGGTCTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDCEVWH*KGGLSE
Trigger: TTCAGACAGACCTCCTTTCCAGTGCCAAACCTCACA...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGGGCATTTTCTTTTCCTaGAATAGAGTGTATGTGACG +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRGIFFS*NRVYVT
Trigger: CGTCACATACACTCTATTCCAGGAAAAGAAAATGCC...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAATCTCAATCGCCATGTaGATGAGGTACGTGTCTAAG +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLISIAM*MRYVSK
Trigger: CTTAGACACGTACCTCATCCACATGGCGATTGAGAT...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGACTTTCTTTTTGGTCTTaGCCATTGATGATGAGCTGC +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRLSFWS*PLMMSC
Trigger: GCAGCTCATCATCAATGGCCAAGACCAAAAAGAAAG...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTACTAATACAGAATGGATaGCTTTCCACTGAACCGGTT +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLLIQNG*LSTEPV
Trigger: AACCGGTTCAGTGGAAAGTCATCCATTCTGTATTAG...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGACATATCCAGTTGCCATaGCAACAACATTATCTCTTC +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRHIQLP*QQHYLF
Trigger: GAAGAGATAATGTTGTTGTCATGGCAACTGGATATG...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGGCCCAGCATCCTGAATaGACTTCTGAAATCATGGCC +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLAQHPE*TSEIMA
Trigger: GGCCATGATTTCAGAAGTTCATTCAGGATGCTGGGC...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACAACGGCTTTAGATCCTaGAGGATGTTCCCTGTTTTC +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDNGFRS*RMFPVF
Trigger: GAAAACAGGGAACATCCTTCAGGATCTAAAGCCGTT...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATCGAAGGACAATAGATaGTGGTTGGACCTTCAAATT +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRSKDNR*WLDLQI
Trigger: AATTTGAAGGTCCAACCATCATCTATTGTCCTTCGA...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCGTAGCTACAACACACTaGATTTCATCTCTCAGGAAC +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVVATTH*ISSLRN
Trigger: GTTCCTGAGAGATGAAATTCAGTGTGTTGTAGCTAC...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGCACAGACTGGGGGAGTaGGCAGTCTTTCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLHRLGE*AVFLFH
Trigger: ATGGAAAAGAAAGACTGCTCACTCCCCCAGTCTGTG...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTGCTGCCGGTATCAGCTaGGGGCACATTTCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFAAGIS*GHISFG
Trigger: GCCAAAGGAAATGTGCCCTCAGCTGATACCGGCAGC...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACGGAAATTACTCCAATTaGTGCAGCGGATGGACTTGT +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDGNYSN*CSGWTC
Trigger: ACAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCC...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAACATCAACCTCCTCTTaGTTCACTAAACTGTCAAGT +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRTSTSS*FTKLSS
Trigger: ACTTGACAGTTTAGTGAAGCAAGAGGAGGTTGATGT...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTACATCAACCTCCTCTTaGTTCACTAAACTGTCAAGT +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTTSTSS*FTKLSS
Trigger: ACTTGACAGTTTAGTGAAGCAAGAGGAGGTTGATGT...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATTTTCTTCTTTAGCTTaGTGTTCCAAATCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAFSSLA*CSKSWS
Trigger: ACTCCAAGATTTGGAACAGCAAGCTAAAGAAGAAAA...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACTTGAGGCAATTAATTTaGTTTGCGTTGGGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDLRQLI*FALGSG
Trigger: GCCGGAACCCAACGCAAAGCAAATTAATTGCCTCAA...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTATTACAGGAACCCTCTaGAGAGTTTCCAAATTTCTG +
Preference number: 4 (lower is better)
Translates to: EADFTVYAALRVSEGSDTITGTL*RVSKFL
Trigger: CAGAAATTTGGAAACTCTCCAGAGGGTTCCTGTAAT...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGAAGTTCTGGGTCCCATaGTTCTTCTTTAATTTTAGC +
Preference number: 4 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRKFWVP*FFFNFS
Trigger: GCTAAAATTAAAGAAGAACCATGGGACCCAGAACTT...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAGAGGAAGACGCCCATTaGTTCCCATTTCCAACCATG +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLEEDAH*FPFPTM
Trigger: CATGGTTGGAAATGGGAACCAATGGGCGTCTTCCTC...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTATCAAGCTGGAGGACTTaGTCTTCCATTAAGGAAATG +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLSSWRT*SSIKEM
Trigger: CATTTCCTTAATGGAAGACCAAGTCCTCCAGCTTGA...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTGCTCTTGGGCTGAGATaGCAGGTTCTAAGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFALGLR*QVLRGW
Trigger: CCAGCCCCTTAGAACCTGCCATCTCAGCCCAAGAGC...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTCGAGCGTCCAGCTCTTaGGCTGAGATGGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFRASSS*AEMAGS
Trigger: AGAACCTGCCATCTCAGCCCAAGAGCTGGACGCTCG...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGGCATTTTCTTTTCCTaGAATAGAGTGTATGTGACG +
Preference number: 4 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRGIFFS*NRVYVT
Trigger: CGTCACATACACTCTATTCCAGGAAAAGAAAATGCC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTGGAATAGAGTGTATGTaGCGGCCACAGACTGGGGGA +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFGIECM*RPQTGG
Trigger: TCCCCCAGTCTGTGGCCGTCACATACACTCTATTCC...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGAAACAAGTAACATTTaGTCTCAGACACACACAACT +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTETSNI*SQTHTT
Trigger: AGTTGTGTGTGTCTGAGAGCAAATGTTACTTGTTTC...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTTGAGGCAATTAATTTaGTTTGCGTTGGGTTCCGGC +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCLRQLI*FALGSG
Trigger: GCCGGAACCCAACGCAAAGCAAATTAATTGCCTCAA...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp GCTTTGTTTTTCAATTCCACGAAGGAAAGAAAACCCAGTTCAACTCATAAGTCAAGGCTCGGAGGAGACTaGGAACTGGCTTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: ALFFNSTKERKPSSTHKSRLGGD*ELASPS
Trigger: GCTTGGAGAAGCCAGTTCGCAGTCTCCTCCGAGCCT...TGACTTATGAGTTGAACTGGGTTTTCTTTCCTTCGTGGAATTGAAAAACAAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTACTCTCCAAATTAGACTaGTTGGTAGTTAATCCAGCT +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLLSKLD*LVVNPA
Trigger: AGCTGGATTAACTACCAAGCAGTCTAATTTGGAGAG...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTGCTCTCACAACTCTCTaGAGAGCTGGGGAAACGCCT +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFALTTL*RAGETP
Trigger: AGGCGTTTCCCCAGCTCTGCAGAGAGTTGTGAGAGC...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATTACAGGAACCCTCTaGAGAGTTTCCAAATTTCTG +
Preference number: 4 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVITGTL*RVSKFL
Trigger: CAGAAATTTGGAAACTCTCCAGAGGGTTCCTGTAAT...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTATTGGACAGCTCAAGCTaGAGGACTTGGTCTTCCATT +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLLDSSS*RTWSSI
Trigger: AATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAA...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCGTCGCCTACACTGACTaGAGTGAAGGTATTTTTCCA +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCVAYTD*SEGIFP
Trigger: TGGAAAAATACCTTCACTCCAGTCAGTGTAGGCGAC...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAATGTTGCGTCGTTTCTaGAGATACAGGATTAGAACT +
Preference number: 4 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLMLRRF*RYRIRT
Trigger: AGTTCTAATCCTGTATCTCCAGAAACGACGCAACAT...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGCAATCGCCATGTGGATaGGGTACGTGTCTAAGTTTT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLQSPCG*GTCLSF
Trigger: AAAACTTAGACACGTACCTCATCCACATGGCGATTG...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGTTTTCTTCTTTAGCTTaGTGTTCCAAATCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTFSSLA*CSKSWS
Trigger: ACTCCAAGATTTGGAACAGCAAGCTAAAGAAGAAAA...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCGATTCAGCCTGGGCCTaGAATTATCACAGCATTTTT +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCDSAWA*NYHSIF
Trigger: AAAAATGCTGTGATAATTGCAGGCCCAGGCTGAATC...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACGGGGGAAAACTGACATaGAAGAAATGTGAAACAAGT +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDGGKLT*KKCETS
Trigger: ACTTGTTTCACATTTCTTCCATGTCAGTTTTCCCCC...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp AGGATGGCCCCATTTCATTTCTGTAAATGTTCTCGTTGTGTGGATGAGTTCAGGCAGCATAAGCATCAGTaGCTGCATACAGTTTCTGGT +
Preference number: 4 (lower is better)
Translates to: RMAPFHFCKCSRCVDEFRQHKHQ*LHTVSG
Trigger: ACCAGAAACTGTATGCAGCCACTGATGCTTATGCTG...CCTGAACTCATCCACACAACGAGAACATTTACAGAAATGAAATGGGGCCATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACATTACAGGAACCCTCTaGAGAGTTTCCAAATTTCTG +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDITGTL*RVSKFL
Trigger: CAGAAATTTGGAAACTCTCCAGAGGGTTCCTGTAAT...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGGTCGCCTACACTGACTaGAGTGAAGGTATTTTTCCA +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLVAYTD*SEGIFP
Trigger: TGGAAAAATACCTTCACTCCAGTCAGTGTAGGCGAC...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAATCTCAATCGCCATGTaGATGAGGTACGTGTCTAAG +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLISIAM*MRYVSK
Trigger: CTTAGACACGTACCTCATCCACATGGCGATTGAGAT...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGAGGGCACATTTCCTTTaGCAAACCACTCGGGTAATT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLRAHFL*QTTRVI
Trigger: AATTACCCGAGTGGTTTGCCAAAGGAAATGTGCCCT...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp AGGATGGCCCCATTTCATTTCTGTAAATGTTCTCGTTGTGTGGATGAGTTCAGGAGGGCACATTTCCTTTaGCAAACCACTCGGGTAATT +
Preference number: 4 (lower is better)
Translates to: RMAPFHFCKCSRCVDEFRRAHFL*QTTRVI
Trigger: AATTACCCGAGTGGTTTGCCAAAGGAAATGTGCCCT...CCTGAACTCATCCACACAACGAGAACATTTACAGAAATGAAATGGGGCCATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR TCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGCTAATACAGAATGGATaGCTTTCCACTGAACCGGTT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLLIQNG*LSTEPV
Trigger: AACCGGTTCAGTGGAAAGTCATCCATTCTGTATTAG...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCCATATCCAGTTGCCATaGCAACAACATTATCTCTTC +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCHIQLP*QQHYLF
Trigger: GAAGAGATAATGTTGTTGTCATGGCAACTGGATATG...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTCCAGTGCAGGTGATCTaGGGGTCTTTCAGGTTTAAG +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFPVQVI*GSFRFK
Trigger: CTTAAACCTGAAAGACCCTCAGATCACCTGCACTGG...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGAATTACTCCAATTGCTaGAGCGGATGGACTTGTCTT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLNYSNC*SGWTCL
Trigger: AAGACAAGTCCATCCGCTGCAGCAATTGGAGTAATT...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACTTTAGAGCAAACACTTaGGCAGTATCACCCAAATTT +
Preference number: 4 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDFRANT*AVSPKF
Trigger: AAATTTGGGTGATACTGCGCAAGTGTTTGCTCTAAA...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAACTTCAACTTTTCATTaGCAACATCCGTCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLTSTFH*QHPSAP
Trigger: TGGAGCTGACGGATGTTGCCAATGAAAAGTTGAAGT...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGCTAGAGTCAAGTTGCTaGAGTAGATCCAAGTTACCA +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLLESSC*SRSKLP
Trigger: TGGTAACTTGGATCTACTCCAGCAACTTGACTCTAG...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGCATATCCAGTTGCCATaGCAACAACATTATCTCTTC +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLHIQLP*QQHYLF
Trigger: GAAGAGATAATGTTGTTGTCATGGCAACTGGATATG...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTTTAGAGCAAACACTTaGGCAGTATCACCCAAATTT +
Preference number: 4 (lower is better)
Translates to: LICSICQSDTASISNTHCFRANT*AVSPKF
Trigger: AAATTTGGGTGATACTGCGCAAGTGTTTGCTCTAAA...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGACATCAACCTCCTCTTaGTTCACTAAACTGTCAAGT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLTSTSS*FTKLSS
Trigger: ACTTGACAGTTTAGTGAAGCAAGAGGAGGTTGATGT...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTCAGCGTGGTATGTTCTaGAGGCTAAGTTCAGTTTCC +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFQRGMF*RLSSVS
Trigger: GGAAACTGAACTTAGCCTGCAGAACATACCACGCTG...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp GCTTTGTTTTTCAATTCCACGAAGGAAAGAAAACCCAGTTCAACTCATAAGTCATCTGCTTCTTTTCCCTaGCTTGTATATGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: ALFFNSTKERKPSSTHKSSASFP*LVYGRP
Trigger: TGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGA...TGACTTATGAGTTGAACTGGGTTTTCTTTCCTTCGTGGAATTGAAAAACAAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGGGGGGAAAACTGACATaGAAGAAATGTGAAACAAGT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLGGKLT*KKCETS
Trigger: ACTTGTTTCACATTTCTTCCATGTCAGTTTTCCCCC...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGAATTGCTGCAGCGGATaGACTTGTCTTTCAAAAGTT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLNCCSG*TCLSKV
Trigger: AACTTTTGAAAGACAAGTCCATCCGCTGCAGCAATT...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
3UTR CAA 72 bp CAGTGTGTATCTGAAGGGACGGCCATGGGCTCTTCCTaGACTACATTACTATATATGCTATATTATAACGTG +
Preference number: 4 (lower is better)
Translates to: QCVSEGTAMGSS*TTLLYMLYYNV
Trigger: CACGTTATAATATAGCATATATAGTAATGTAGTCAAGGAAGAGCCCATGGCCGTCCCTTCAGATACACACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR TCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTCAATCGCCATGTGGATaGGGTACGTGTCTAAGTTTT +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFQSPCG*GTCLSF
Trigger: AAAACTTAGACACGTACCTCATCCACATGGCGATTG...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR GCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTATAAGCATCAGTGGCTaGATACAGTTTCTGGTCCTC +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFISISG*IQFLVL
Trigger: GAGGACCAGAAACTGTATGCAGCCACTGATGCTTAT...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTGAACTTCTGAAATCATaGCCCCACTCTGAAATGCAG +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFELLKS*PHSEMQ
Trigger: CTGCATTTCAGAGTGGGGCCATGATTTCAGAAGTTC...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTAGGGCACATTTCCTTTaGCAAACCACTCGGGTAATT +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFRAHFL*QTTRVI
Trigger: AATTACCCGAGTGGTTTGCCAAAGGAAATGTGCCCT...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TTATGCGTGATATACGGAAAGCTACCTTCTGGTAATAGAAAGCAGAAAAATGAGAACGGCTTTAGATCCTaGAGGATGTTCCCTGTTTTC +
Preference number: 4 (lower is better)
Translates to: LCVIYGKLPSGNRKQKNENGFRS*RMFPVF
Trigger: GAAAACAGGGAACATCCTTCAGGATCTAAAGCCGTT...CTCATTTTTCTGCTTTCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp GAAAGCAAAGACCGGCTGTATCTTCATATCTGTCCCTATGCAACTACTGATCTGTTTTCTTCTTTAGCTTaGTGTTCCAAATCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: ESKDRLYLHICPYATTDLFSSLA*CSKSWS
Trigger: ACTCCAAGATTTGGAACAGCAAGCTAAAGAAGAAAA...CAGATCAGTAGTTGCATAGGGACAGATATGAAGATACAGCCGGTCTTTGCTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTACAATAGATGATGGTTaGACCTTCAAATTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFTIDDG*TFKFPG
Trigger: GCCTGGGAATTTGAAGGTCCAACCATCATCTATTGT...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp TTATGCGTGATATACGGAAAGCTACCTTCTGGTAATAGAAAGCAGAAAAATGAGCCAAATTTCTGCAAGTaGCAGGAAAACGATTGGCTA +
Preference number: 4 (lower is better)
Translates to: LCVIYGKLPSGNRKQKNEPNFCK*QENDWL
Trigger: TAGCCAATCGTTTTCCTGTCACTTGCAGAAATTTGG...CTCATTTTTCTGCTTTCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR GCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTCTCTCCAAATTAGACTaGTTGGTAGTTAATCCAGCT +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFLSKLD*LVVNPA
Trigger: AGCTGGATTAACTACCAAGCAGTCTAATTTGGAGAG...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CCA 90 bp ACTGATTTCTTGGGTCACTTAGATGTTCCAGATACAGATGAAACTTTAGATAGTGAACTTCTGAAATCATaGCCCCACTCTGAAATGCAG +
Preference number: 4 (lower is better)
Translates to: TDFLGHLDVPDTDETLDSELLKS*PHSEMQ
Trigger: CTGCATTTCAGAGTGGGGCCATGATTTCAGAAGTTC...ACTATCTAAAGTTTCATCTGTATCTGGAACATCTAAGTGACCCAAGAAATCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GCTTTGTTTTTCAATTCCACGAAGGAAAGAAAACCCAGTTCAACTCATAAGTCAACAATAGATGATGGTTaGACCTTCAAATTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: ALFFNSTKERKPSSTHKSTIDDG*TFKFPG
Trigger: GCCTGGGAATTTGAAGGTCCAACCATCATCTATTGT...TGACTTATGAGTTGAACTGGGTTTTCTTTCCTTCGTGGAATTGAAAAACAAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTATGTTGCGTCGTTTCTaGAGATACAGGATTAGAACT +
Preference number: 4 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFMLRRF*RYRIRT
Trigger: AGTTCTAATCCTGTATCTCCAGAAACGACGCAACAT...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR TCA 90 bp GCTTTGTTTTTCAATTCCACGAAGGAAAGAAAACCCAGTTCAACTCATAAGTCATCGAAGGACAATAGATaGTGGTTGGACCTTCAAATT +
Preference number: 4 (lower is better)
Translates to: ALFFNSTKERKPSSTHKSSKDNR*WLDLQI
Trigger: AATTTGAAGGTCCAACCATCATCTATTGTCCTTCGA...TGACTTATGAGTTGAACTGGGTTTTCTTTCCTTCGTGGAATTGAAAAACAAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp GCTTTGTTTTTCAATTCCACGAAGGAAAGAAAACCCAGTTCAACTCATAAGTCAAATTGCTGCAGCGGATaGACTTGTCTTTCAAAAGTT +
Preference number: 4 (lower is better)
Translates to: ALFFNSTKERKPSSTHKSNCCSG*TCLSKV
Trigger: AACTTTTGAAAGACAAGTCCATCCGCTGCAGCAATT...TGACTTATGAGTTGAACTGGGTTTTCTTTCCTTCGTGGAATTGAAAAACAAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp TTATGCGTGATATACGGAAAGCTACCTTCTGGTAATAGAAAGCAGAAAAATGAGGGCATTTTCTTTTCCTaGAATAGAGTGTATGTGACG +
Preference number: 4 (lower is better)
Translates to: LCVIYGKLPSGNRKQKNEGIFFS*NRVYVT
Trigger: CGTCACATACACTCTATTCCAGGAAAAGAAAATGCC...CTCATTTTTCTGCTTTCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CCA 90 bp TTATGCGTGATATACGGAAAGCTACCTTCTGGTAATAGAAAGCAGAAAAATGAGAAGTTCTGGGTCCCATaGTTCTTCTTTAATTTTAGC +
Preference number: 4 (lower is better)
Translates to: LCVIYGKLPSGNRKQKNEKFWVP*FFFNFS
Trigger: GCTAAAATTAAAGAAGAACCATGGGACCCAGAACTT...CTCATTTTTCTGCTTTCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
3UTR CAA 72 bp ATAACGTGTCTTAGTTGTCCATTAAACACTGATTTCTaGGGTCACTTAGATGTTCCAGATACAGATGAAACT +
Preference number: 4 (lower is better)
Translates to: ITCLSCPLNTDF*GHLDVPDTDET
Trigger: AGTTTCATCTGTATCTGGAACATCTAAGTGACCCAAGAAATCAGTGTTTAATGGACAACTAAGACACGTTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp ATGAAGCAGACGTTTTCCTGCAGCAGGCCACCGCAATCAGCAGGGACCCGAGCGGCCAACAGAGCAGCTTaGCCTTCAGAGACACCGTCG +
Preference number: 5 (lower is better)
Translates to: MKQTFSCSRPPQSAGTRAANRAA*PSETPS
Trigger: CGACGGTGTCTCTGAAGGCAAAGCTGCTCTGTTGGC...CGCTCGGGTCCCTGCTGATTGCGGTGGCCTGCTGCAGGAAAACGTCTGCTTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS TCA 90 bp GGTAGCCGGCTTTCACCGCCTGGGCTAAGTGCATGCCGGCTGCTGTaGGAGGCAGGAGCCTGTTCTCAGCTATGCTGTGTAAGGGCATTT +
Preference number: 5 (lower is better)
Translates to: GSRLSPPGLSACRLL*EAGACSQLCCVRAF
Trigger: AAATGCCCTTACACAGCATAGCTGAGAACAGGCTCCTGCCTCTCACAGCAGCCGGCATGCACTTAGCCCAGGCGGTGAAAGCCGGCTACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 90 bp GCCTGGCATATAGCCCAGTCCGAGCGTCCAGCTCTTGGGCTGAGATaGCAGGTTCTAAGGGGCTGGAAGATGTTCCTGGTGACGGCATCA +
Preference number: 5 (lower is better)
Translates to: AWHIAQSERPALGLR*QVLRGWKMFLVTAS
Trigger: TGATGCCGTCACCAGGAACATCTTCCAGCCCCTTAGAACCTGCCATCTCAGCCCAAGAGCTGGACGCTCGGACTGGGCTATATGCCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp ATGAAGCAGACGTTTTCCTGCAGCAGGCCACCGCAATCAGCAGGGACCCGAGCGGGGAAATTACTCCAATaGCTGCAGCGGATGGACTTG +
Preference number: 5 (lower is better)
Translates to: MKQTFSCSRPPQSAGTRAGKLLQ*LQRMDL
Trigger: CAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCCC...CGCTCGGGTCCCTGCTGATTGCGGTGGCCTGCTGCAGGAAAACGTCTGCTTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGGCCAACAGAGCAGCTTaGCCTTCAGAGACACCGTCG +
Preference number: 5 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRANRAA*PSETPS
Trigger: CGACGGTGTCTCTGAAGGCAAAGCTGCTCTGTTGGC...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 90 bp GATGGGAGGGTTTCGGATGACATCCATAATAATCTTCCAAGTCTCTaGGGTCAGGCCAGCTCGCTCCATATCCAGGGGGTAGCCGGCTTT +
Preference number: 5 (lower is better)
Translates to: DGRVSDDIHNNLPSL*GQASSLHIQGVAGF
Trigger: AAAGCCGGCTACCCCCTGGATATGGAGCGAGCTGGCCTGACCCCAGAGACTTGGAAGATTATTATGGATGTCATCCGAAACCCTCCCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 90 bp GTCTTCCCGGATGGAAGAGCTTGCAGTAGCGGAGAGTGCAATGACTaGAACCAATGGGAGCGCTGTTTTAAGAGAGCCCAGCATCCTGAA +
Preference number: 5 (lower is better)
Translates to: VFPDGRACSSGECND*NQWERCFKRAQHPE
Trigger: TTCAGGATGCTGGGCTCTCTTAAAACAGCGCTCCCATTGGTTCCAGTCATTGCACTCTCCGCTACTGCAAGCTCTTCCATCCGGGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGTGTTTAACCAGACCATaGAGGCTCCAGGTCTCTGCG +
Preference number: 5 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQCLTRP*RLQVSA
Trigger: CGCAGAGACCTGGAGCCTCAATGGTCTGGTTAAACA...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAGGGAAATTACTCCAATaGCTGCAGCGGATGGACTTG +
Preference number: 5 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAGKLLQ*LQRMDL
Trigger: CAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCCC...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCACATCTCTTCATTAGCTaGAAGGAGAAGGCTCGGAGG +
Preference number: 5 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAHLFIS*KEKARR
Trigger: CCTCCGAGCCTTCTCCTTCAAGCTAATGAAGAGATG...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTTCCTGCTCCTCTTaGATGGCTTCATTTCCGTGT +
Preference number: 5 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQASSCSS*MASFPC
Trigger: ACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGA...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 90 bp GCTTATAATGTCTTCCCGGATGGAAGAGCTTGCAGTAGCGGAGAGTaGAATGACTGGAACCAATGGGAGCGCTGTTTTAAGAGAGCCCAG +
Preference number: 5 (lower is better)
Translates to: AYNVFPDGRACSSGE*NDWNQWERCFKRAQ
Trigger: CTGGGCTCTCTTAAAACAGCGCTCCCATTGGTTCCAGTCATTGCACTCTCCGCTACTGCAAGCTCTTCCATCCGGGAAGACATTATAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 90 bp ACAACTGGATCACTGCGACTCTGCTTCTTTTCCCTGGCTTGTATATaGGCGGCCATTCCATGTCAAATCCCACCACATCGCCATCAGACA +
Preference number: 5 (lower is better)
Translates to: TTGSLRLCFFSLACI*AAIPCQIPPHRHQT
Trigger: TGTCTGATGGCGATGTGGTGGGATTTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CCA 90 bp CTCAGACACACACAACTGGATCACTGCGACTCTGCTTCTTTTCCCTaGCTTGTATATGGGCGGCCATTCCATGTCAAATCCCACCACATC +
Preference number: 5 (lower is better)
Translates to: LRHTQLDHCDSASFP*LVYGRPFHVKSHHI
Trigger: GATGTGGTGGGATTTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTTGTGTGTGTCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CCA 90 bp CCAATTCCAAATTTCTCCTGCAGGATGTCCACAGCAGACAGTAGCTaGAATGCTTGTGGCCCAAAGTCTTGGGATGCGTCCTCTGAGTTG +
Preference number: 5 (lower is better)
Translates to: PIPNFSCRMSTADSS*NACGPKSWDASSEL
Trigger: CAACTCAGAGGACGCATCCCAAGACTTTGGGCCACAAGCATTCCAGCTACTGTCTGCTGTGGACATCCTGCAGGAGAAATTTGGAATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTCTTCCTGCTCCTCTTaGATGGCTTCATTTCCGTGT +
Preference number: 5 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRSSCSS*MASFPC
Trigger: ACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGA...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAACAGGCTGGAACATaGGACAGCTCAAGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLKQAGT*DSSSWR
Trigger: CCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTGTTT...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCAAACAGGCTGGAACATaGGACAGCTCAAGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVKQAGT*DSSSWR
Trigger: CCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTGTTT...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGGCCTTCTGCAGACATTaGTCCTCAAAATGGGACAAG +
Preference number: 5 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQAFCRH*SSKWDK
Trigger: CTTGTCCCATTTTGAGGACAAATGTCTGCAGAAGGC...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGGCCTTCTGCAGACATTaGTCCTCAAAATGGGACAAG +
Preference number: 5 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRAFCRH*SSKWDK
Trigger: CTTGTCCCATTTTGAGGACAAATGTCTGCAGAAGGC...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGACATCTCTTCATTAGCTaGAAGGAGAAGGCTCGGAGG +
Preference number: 5 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRHLFIS*KEKARR
Trigger: CCTCCGAGCCTTCTCCTTCAAGCTAATGAAGAGATG...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCACCTTTCTTTTTGGTCTaGGCCATTGATGATGAGCTG +
Preference number: 5 (lower is better)
Translates to: LMSPWLGWCTDTVIQASAPFFLV*AIDDEL
Trigger: CAGCTCATCATCAATGGCCAAGACCAAAAAGAAAGG...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp CTGCTGGAATCACAAGGAGGCTGGGTTCTGCTGTCGGAACCACTCTaGAGAATCTCAATCGCCATGTGGATGAGGTACGTGTCTAAGTTT +
Preference number: 5 (lower is better)
Translates to: LLESQGGWVLLSEPL*RISIAMWMRYVSKF
Trigger: AAACTTAGACACGTACCTCATCCACATGGCGATTGAGATTCTTCAGAGTGGTTCCGACAGCAGAACCCAGCCTCCTTGTGATTCCAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp CGGGTAATTTTCTCTTTGACTCTGAAGATGATGCCTTGGTCTCGGTaGCCGCCTCTTTGCTCTCCTTACAGCTCTCACAACTCTCTGCAG +
Preference number: 5 (lower is better)
Translates to: RVIFSLTLKMMPWSR*PPLCSPYSSHNSLQ
Trigger: CTGCAGAGAGTTGTGAGAGCTGTAAGGAGAGCAAAGAGGCGGTCACCGAGACCAAGGCATCATCTTCAGAGTCAAAGAGAAAATTACCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 90 bp ATCGTGAATCTCAATAAGGAGATTCCTGGATGTGTTAAAGTCTGCTaGAGCCCAGAGCAAGTGACAGGAACTCTGAAGTCCATCCCGGCC +
Preference number: 5 (lower is better)
Translates to: IVNLNKEIPGCVKVC*SPEQVTGTLKSIPA
Trigger: GGCCGGGATGGACTTCAGAGTTCCTGTCACTTGCTCTGGGCTCCAGCAGACTTTAACACATCCAGGAATCTCCTTATTGAGATTCACGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp GAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTTCTTCCTGCTCCTCTTaGATGGCTTCATTTCCGTGT +
Preference number: 5 (lower is better)
Translates to: EADFTVYAALRVSEGSDTSSCSS*MASFPC
Trigger: ACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGA...AGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACAAACAGGCTGGAACATaGGACAGCTCAAGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDKQAGT*DSSSWR
Trigger: CCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTGTTT...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGAGCCTTCTGCAGACATTaGTCCTCAAAATGGGACAAG +
Preference number: 5 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRAFCRH*SSKWDK
Trigger: CTTGTCCCATTTTGAGGACAAATGTCTGCAGAAGGC...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTAGCCAACAGAGCAGCTTaGCCTTCAGAGACACCGTCG +
Preference number: 5 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLANRAA*PSETPS
Trigger: CGACGGTGTCTCTGAAGGCAAAGCTGCTCTGTTGGC...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp GAACTTGGTAGCAGAACTTTCCTTGGAAACATCTCTTCATTAGCTTaGAGGAGAAGGCTCGGAGGAGACTGCGAACTGGCTTCTCCAAGC +
Preference number: 5 (lower is better)
Translates to: ELGSRTFLGNISSLA*RRRLGGDCELASPS
Trigger: GCTTGGAGAAGCCAGTTCGCAGTCTCCTCCGAGCCTTCTCCTTCAAGCTAATGAAGAGATGTTTCCAAGGAAAGTTCTGCTACCAAGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 90 bp TCCTTCAGCTATGAGATGGTGAGAAAGGGTCTTCCACCAACTTTCTaGTTGCTCCTTTCCAGCACCAAAGAGCCTGTGACCCCGATATTT +
Preference number: 5 (lower is better)
Translates to: SFSYEMVRKGLPPTF*LLLSSTKEPVTPIF
Trigger: AAATATCGGGGTCACAGGCTCTTTGGTGCTGGAAAGGAGCAAGCAGAAAGTTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGTTCTGTAGCACATCTTaGACTCTGCATAGACATCCA +
Preference number: 5 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQFCSTS*TLHRHP
Trigger: TGGATGTCTATGCAGAGTCAAAGATGTGCTACAGAA...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp CCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTTCACCAAAGTTCAGCAGTAACTaGTTCTGTCATTTTTCTCGA +
Preference number: 5 (lower is better)
Translates to: PSGQGKLPRCPVKDTCSPKFSSN*FCHFSR
Trigger: TCGAGAAAAATGACAGAACAAGTTACTGCTGAACTT...TGGTGAACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAATGTCCAGCAGAACCTaGTTTGTTGCTAAAATAGCT +
Preference number: 5 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAMSSRT*FVAKIA
Trigger: AGCTATTTTAGCAACAAACAAGGTTCTGCTGGACAT...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp GAAAAGCCCTCAGGTCAAGGAAAGCTACCCAGGTGCCCAGTGAAGGACACCTGTAAGAGACCTTTCTTTTaGGTCTTGGCCATTGATGAT +
Preference number: 5 (lower is better)
Translates to: EKPSGQGKLPRCPVKDTCKRPFF*VLAIDD
Trigger: ATCATCAATGGCCAAGACCAAAAAGAAAGGTCTCTT...ACAGGTGTCCTTCACTGGGCACCTGGGTAGCTTTCCTTGACCTGAGGGCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS TCA 90 bp CCAAAGTCTTGGGATGCGTCCTCTGAGTTGTTAGCAGTAAGGCAATaGTTCAGCCTGGGCCTGCAATTATCACAGCATTTTTCAGTTCCC +
Preference number: 5 (lower is better)
Translates to: PKSWDASSELLAVRQ*FSLGLQLSQHFSVP
Trigger: GGGAACTGAAAAATGCTGTGATAATTGCAGGCCCAGGCTGAATCATTGCCTTACTGCTAACAACTCAGAGGACGCATCCCAAGACTTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 90 bp AGTAACATTTGCTCTCAGACACACACAACTGGATCACTGCGACTCTaGTTCTTTTCCCTGGCTTGTATATGGGCGGCCATTCCATGTCAA +
Preference number: 5 (lower is better)
Translates to: SNICSQTHTTGSLRL*FFSLACIWAAIPCQ
Trigger: TTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTTGTGTGTGTCTGAGAGCAAATGTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS GCA 90 bp GTGAAACAAGTAACATTTGCTCTCAGACACACACAACTGGATCACTaGGACTCTGCTTCTTTTCCCTGGCTTGTATATGGGCGGCCATTC +
Preference number: 5 (lower is better)
Translates to: VKQVTFALRHTQLDH*DSASFPWLVYGRPF
Trigger: GAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTTGTGTGTGTCTGAGAGCAAATGTTACTTGTTTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS GCA 90 bp ATTTGCTTTGCGTTGGGTTCCGGCAATAAATGGTCCTCTTCTTCCTaGTCCTCTTTGATGGCTTCATTTCCGTGTCCATCTTCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: ICFALGSGNKWSSSS*SSLMASFPCPSSSS
Trigger: TGAGGAGGAAGATGGACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCATTTATTGCCGGAACCCAACGCAAAGCAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 90 bp TTCATCGTGAATCTCAATAAGGAGATTCCTGGATGTGTTAAAGTCTaGTGGAGCCCAGAGCAAGTGACAGGAACTCTGAAGTCCATCCCG +
Preference number: 5 (lower is better)
Translates to: FIVNLNKEIPGCVKV*WSPEQVTGTLKSIP
Trigger: CGGGATGGACTTCAGAGTTCCTGTCACTTGCTCTGGGCTCCAGCAGACTTTAACACATCCAGGAATCTCCTTATTGAGATTCACGATGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp TCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTGCAAGAAGAGAAAGACCACTTCAACTTTTCATaGGCAACATCCGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: SKRHSLHFQHTLLQEEKDHFNFS*ATSVSS
Trigger: GGAGCTGACGGATGTTGCCAATGAAAAGTTGAAGTG...GTCTTTCTCTTCTTGCAGCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTACTGCAGCGGATGGACTaGTCTTTCAAAAGTTGTTTC +
Preference number: 5 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLLQRMD*SFKSCF
Trigger: GAAACAACTTTTGAAAGACAAGTCCATCCGCTGCAG...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp TGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCAAAGTTCAGCAGTAACTaGTTCTGTCATTTTTCTCGA +
Preference number: 5 (lower is better)
Translates to: WKLMSPWLGWCTDTVIQAKFSSN*FCHFSR
Trigger: TCGAGAAAAATGACAGAACAAGTTACTGCTGAACTT...TGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCATACAGGCATCTGCACTGAACACTAGTTACTaGACAGAAATGTTTGATGAC +
Preference number: 5 (lower is better)
Translates to: LMSPWLGWCTDTVIQASALNTSY*TEMFDD
Trigger: GTCATCAAACATTTCTGTCAAGTAACTAGTGTTCAG...TGCAGATGCCTGTATGACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp TATGCTGCACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGTTATACATATCTGAGTaGATGGGAGGGTTTCGGATG +
Preference number: 5 (lower is better)
Translates to: YAALRVSEGSDTVAQLPTLYISE*MGGFRM
Trigger: CATCCGAAACCCTCCCATCAACTCAGATATGTATAA...CGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGTGCAGCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp ACTCCGGGTCTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTACCTTTCTTTTTGGTCTaGGCCATTGATGATGAGCTG +
Preference number: 5 (lower is better)
Translates to: TPGLRRFRYCSSTANGQLPFFLV*AIDDEL
Trigger: CAGCTCATCATCAATGGCCAAGACCAAAAAGAAAGG...TAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAGACCCGGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp TCAGGAGGAAGACGCCCATTGGTTCCCATTTCCAACCATGTAGAGTaGGTGGGTTCCACCACGTCACTATTTAGGTTTTCTAAAGACTTC +
Preference number: 5 (lower is better)
Translates to: SGGRRPLVPISNHVE*VGSTTSLFRFSKDF
Trigger: GAAGTCTTTAGAAAACCTAAATAGTGACGTGGTGGAACCCACTCACTCTACATGGTTGGAAATGGGAACCAATGGGCGTCTTCCTCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp TCCCAGGCAGAACTTGCCTTTCGGACGAGAAACGGCTTTAGATCCTaGAGGATGTTCCCTGTTTTCCGTCCAACTTCTAAGTACAGATTT +
Preference number: 5 (lower is better)
Translates to: SQAELAFRTRNGFRS*RMFPVFRPTSKYRF
Trigger: AAATCTGTACTTAGAAGTTGGACGGAAAACAGGGAACATCCTTCAGGATCTAAAGCCGTTTCTCGTCCGAAAGGCAAGTTCTGCCTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 90 bp CCATTGATGATGAGCTGCCGGTATCAGCTGAGGGCACATTTCCTTTaGCAAACCACTCGGGTAATTTTCTCTTTGACTCTGAAGATGATG +
Preference number: 5 (lower is better)
Translates to: PLMMSCRYQLRAHFL*QTTRVIFSLTLKMM
Trigger: CATCATCTTCAGAGTCAAAGAGAAAATTACCCGAGTGGTTTGCCAAAGGAAATGTGCCCTCAGCTGATACCGGCAGCTCATCATCAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp AATCGGAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGAAGTTCAGCAGTAACTaGTTCTGTCATTTTTCTCGA +
Preference number: 5 (lower is better)
Translates to: NRKGSRLHSLCCTPGLRRKFSSN*FCHFSR
Trigger: TCGAGAAAAATGACAGAACAAGTTACTGCTGAACTT...CCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTCCGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp GAAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGCTGAACACTAGTTACTaGACAGAAATGTTTGATGAC +
Preference number: 5 (lower is better)
Translates to: ERKPTSQSMLHSGSQKVQLNTSY*TEMFDD
Trigger: GTCATCAAACATTTCTGTCAAGTAACTAGTGTTCAG...CTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp TTTTCCTTGGGAACTTCTACCAAGAATCCTTCAGCTATGAGATGGTaGGAAAGGGTCTTCCACCAACTTTCTGCTTGCTCCTTTCCAGCA +
Preference number: 5 (lower is better)
Translates to: FSLGTSTKNPSAMRW*ERVFHQLSACSFPA
Trigger: TGCTGGAAAGGAGCAAGCAGAAAGTTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGAAGGATTCTTGGTAGAAGTTCCCAAGGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 90 bp GCCTCATCCACAGCAATGAGAGTGATGCCAATACTAGAGTCAAGTTaGTGGAGTAGATCCAAGTTACCAGAACAGAACTCTGGAGTTATG +
Preference number: 5 (lower is better)
Translates to: ASSTAMRVMPILESS*WSRSKLPEQNSGVM
Trigger: CATAACTCCAGAGTTCTGTTCTGGTAACTTGGATCTACTCCAGCAACTTGACTCTAGTATTGGCATCACTCTCATTGCTGTGGATGAGGC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCCTGCAGCGGATGGACTaGTCTTTCAAAAGTTGTTTC +
Preference number: 5 (lower is better)
Translates to: LICSICQSDTASISNTHCLQRMD*SFKSCF
Trigger: GAAACAACTTTTGAAAGACAAGTCCATCCGCTGCAG...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp AAAGGAAGCCGACTTCACAGTCTATGCTGCACTCCGGGTCTCAGAAGGTTCAGATTTTTCTTCTTTAGCTaGCTGTTCCAAATCTTGGAG +
Preference number: 5 (lower is better)
Translates to: KGSRLHSLCCTPGLRRFRFFFFS*LFQILE
Trigger: CTCCAAGATTTGGAACAGCAAGCTAAAGAAGAAAAA...TCTGAACCTTCTGAGACCCGGAGTGCAGCATAGACTGTGAAGTCGGCTTCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTTTTTAAATGGAAGCTGATGTCTCCCTGGCTGGGCTGGTGCACTGATACTGTCAAGAGACCTTTCTTTTaGGTCTTGGCCATTGATGAT +
Preference number: 5 (lower is better)
Translates to: LFKWKLMSPWLGWCTDTVKRPFF*VLAIDD
Trigger: ATCATCAATGGCCAAGACCAAAAAGAAAGGTCTCTT...GACAGTATCAGTGCACCAGCCCAGCCAGGGAGACATCAGCTTCCATTTAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp ACTTCTAAGTACAGATTTGGCCGATCAAATCCAGTGCAGGTGATCTaGGGGTCTTTCAGGTTTAAGCAGCTTATAATGTCTTCCCGGATG +
Preference number: 5 (lower is better)
Translates to: TSKYRFGRSNPVQVI*GSFRFKQLIMSSRM
Trigger: CATCCGGGAAGACATTATAAGCTGCTTAAACCTGAAAGACCCTCAGATCACCTGCACTGGATTTGATCGGCCAAATCTGTACTTAGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCTTATACATATCTGAGTaGATGGGAGGGTTTCGGATG +
Preference number: 5 (lower is better)
Translates to: LICSICQSDTASISNTHCLYISE*MGGFRM
Trigger: CATCCGAAACCCTCCCATCAACTCAGATATGTATAA...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp AGGATGGCCCCATTTCATTTCTGTAAATGTTCTCGTTGTGTGGATGAGTTCAGGCCTTTCTTTTTGGTCTaGGCCATTGATGATGAGCTG +
Preference number: 5 (lower is better)
Translates to: RMAPFHFCKCSRCVDEFRPFFLV*AIDDEL
Trigger: CAGCTCATCATCAATGGCCAAGACCAAAAAGAAAGG...CCTGAACTCATCCACACAACGAGAACATTTACAGAAATGAAATGGGGCCATCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS GCA 90 bp TTATCACAGCATTTTTCAGTTCCCATAATGTCCAAGGAGGCCTTCTaGAGACATTTGTCCTCAAAATGGGACAAGATGATTCGTCGCCTA +
Preference number: 5 (lower is better)
Translates to: LSQHFSVPIMSKEAF*RHLSSKWDKMIRRL
Trigger: TAGGCGACGAATCATCTTGTCCCATTTTGAGGACAAATGTCTGCAGAAGGCCTCCTTGGACATTATGGGAACTGAAAAATGCTGTGATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTCAGAAGGTTCAGATACTGTAGCTCAACTGCCAACGGGCAATTAAAGACTCTATTCTGTAGCACATCTTaGACTCTGCATAGACATCCA +
Preference number: 5 (lower is better)
Translates to: LRRFRYCSSTANGQLKTLFCSTS*TLHRHP
Trigger: TGGATGTCTATGCAGAGTCAAAGATGTGCTACAGAA...TAGAGTCTTTAATTGCCCGTTGGCAGTTGAGCTACAGTATCTGAACCTTCTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCATGTCCAGCAGAACCTaGTTTGTTGCTAAAATAGCT +
Preference number: 5 (lower is better)
Translates to: LICSICQSDTASISNTHCMSSRT*FVAKIA
Trigger: AGCTATTTTAGCAACAAACAAGGTTCTGCTGGACAT...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp CTGATCTGTTCTATATGTCAAAGCGACACAGCCTCCATTTCCAACACACACTGCAAGAGACCTTTCTTTTaGGTCTTGGCCATTGATGAT +
Preference number: 5 (lower is better)
Translates to: LICSICQSDTASISNTHCKRPFF*VLAIDD
Trigger: ATCATCAATGGCCAAGACCAAAAAGAAAGGTCTCTT...GCAGTGTGTGTTGGAAATGGAGGCTGTGTCGCTTTGACATATAGAACAGATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 90 bp TATATTTGTTTTCCTTGGGAACTTCTACCAAGAATCCTTCAGCTATaGGATGGTGAGAAAGGGTCTTCCACCAACTTTCTGCTTGCTCCT +
Preference number: 5 (lower is better)
Translates to: YICFPWELLPRILQL*DGEKGSSTNFLLAP
Trigger: AGGAGCAAGCAGAAAGTTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGAAGGATTCTTGGTAGAAGTTCCCAAGGAAAACAAATATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp TTATGCGTGATATACGGAAAGCTACCTTCTGGTAATAGAAAGCAGAAAAATGAGCACTTCAACTTTTCATaGGCAACATCCGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: LCVIYGKLPSGNRKQKNEHFNFS*ATSVSS
Trigger: GGAGCTGACGGATGTTGCCAATGAAAAGTTGAAGTG...CTCATTTTTCTGCTTTCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS-3UTR CAA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTTTATACATATCTGAGTaGATGGGAGGGTTTCGGATG +
Preference number: 5 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFLYISE*MGGFRM
Trigger: CATCCGAAACCCTCCCATCAACTCAGATATGTATAA...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
40% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp TGCATAGAATTTAGTTGTTTCTGTAACTGGAGTCCTTGTCCGCTTTCCCTTTTTTTTTTCTTCTTTAGCTaGCTGTTCCAAATCTTGGAG +
Preference number: 5 (lower is better)
Translates to: CIEFSCFCNWSPCPLSLFFFFFS*LFQILE
Trigger: CTCCAAGATTTGGAACAGCAAGCTAAAGAAGAAAAA...AAAAAGGGAAAGCGGACAAGGACTCCAGTTACAGAAACAACTAAATTCTATGCA
38% GC, longest homopolymer 10 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS-3UTR CAA 90 bp TTATGCGTGATATACGGAAAGCTACCTTCTGGTAATAGAAAGCAGAAAAATGAGCTGAACACTAGTTACTaGACAGAAATGTTTGATGAC +
Preference number: 5 (lower is better)
Translates to: LCVIYGKLPSGNRKQKNELNTSY*TEMFDD
Trigger: GTCATCAAACATTTCTGTCAAGTAACTAGTGTTCAG...CTCATTTTTCTGCTTTCTATTACCAGAAGGTAGCTTTCCGTATATCACGCATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033991.13
CDS GCA 72 bp CACAACTCTCTGCAGAGCTGGGGAAACGCCTCTTCCTaGTGGAATCACAAGGAGGCTGGGTTCTGCTGTCGG +
Preference number: 6 (lower is better)
Translates to: HNSLQSWGNASS*WNHKEAGFCCR
Trigger: CCGACAGCAGAACCCAGCCTCCTTGTGATTCCAGCAGGAAGAGGCGTTTCCCCAGCTCTGCAGAGAGTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp ATAGCCCAGTCCGAGCGTCCAGCTCTTGGGCTGAGATaGCAGGTTCTAAGGGGCTGGAAGATGTTCCTGGTG +
Preference number: 6 (lower is better)
Translates to: IAQSERPALGLR*QVLRGWKMFLV
Trigger: CACCAGGAACATCTTCCAGCCCCTTAGAACCTGCCATCTCAGCCCAAGAGCTGGACGCTCGGACTGGGCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp CCAGCTCTTGGGCTGAGATGGCAGGTTCTAAGGGGCTaGAAGATGTTCCTGGTGACGGCATCACGGCACTTT +
Preference number: 6 (lower is better)
Translates to: PALGLRWQVLRG*KMFLVTASRHF
Trigger: AAAGTGCCGTGATGCCGTCACCAGGAACATCTTCCAGCCCCTTAGAACCTGCCATCTCAGCCCAAGAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 72 bp CGCCTCTTTGCTCTCCTTACAGCTCTCACAACTCTCTaGAGAGCTGGGGAAACGCCTCTTCCTGCTGGAATC +
Preference number: 6 (lower is better)
Translates to: RLFALLTALTTL*RAGETPLPAGI
Trigger: GATTCCAGCAGGAAGAGGCGTTTCCCCAGCTCTGCAGAGAGTTGTGAGAGCTGTAAGGAGAGCAAAGAGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp TGCTCTCCTTACAGCTCTCACAACTCTCTGCAGAGCTaGGGAAACGCCTCTTCCTGCTGGAATCACAAGGAG +
Preference number: 6 (lower is better)
Translates to: CSPYSSHNSLQS*GNASSCWNHKE
Trigger: CTCCTTGTGATTCCAGCAGGAAGAGGCGTTTCCCCAGCTCTGCAGAGAGTTGTGAGAGCTGTAAGGAGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp GAGATGGTGAGAAAGGGTCTTCCACCAACTTTCTGCTaGCTCCTTTCCAGCACCAAAGAGCCTGTGACCCCG +
Preference number: 6 (lower is better)
Translates to: EMVRKGLPPTFC*LLSSTKEPVTP
Trigger: CGGGGTCACAGGCTCTTTGGTGCTGGAAAGGAGCAAGCAGAAAGTTGGTGGAAGACCCTTTCTCACCATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp TCACAAGGAGGCTGGGTTCTGCTGTCGGAACCACTCTaGAGAATCTCAATCGCCATGTGGATGAGGTACGTG +
Preference number: 6 (lower is better)
Translates to: SQGGWVLLSEPL*RISIAMWMRYV
Trigger: CACGTACCTCATCCACATGGCGATTGAGATTCTTCAGAGTGGTTCCGACAGCAGAACCCAGCCTCCTTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 72 bp GTCTTCCCGGATGGAAGAGCTTGCAGTAGCGGAGAGTaGAATGACTGGAACCAATGGGAGCGCTGTTTTAAG +
Preference number: 6 (lower is better)
Translates to: VFPDGRACSSGE*NDWNQWERCFK
Trigger: CTTAAAACAGCGCTCCCATTGGTTCCAGTCATTGCACTCTCCGCTACTGCAAGCTCTTCCATCCGGGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp TCACTGCGACTCTGCTTCTTTTCCCTGGCTTGTATATaGGCGGCCATTCCATGTCAAATCCCACCACATCGC +
Preference number: 6 (lower is better)
Translates to: SLRLCFFSLACI*AAIPCQIPPHR
Trigger: GCGATGTGGTGGGATTTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CCA 72 bp GATGGAAGAGCTTGCAGTAGCGGAGAGTGCAATGACTaGAACCAATGGGAGCGCTGTTTTAAGAGAGCCCAG +
Preference number: 6 (lower is better)
Translates to: DGRACSSGECND*NQWERCFKRAQ
Trigger: CTGGGCTCTCTTAAAACAGCGCTCCCATTGGTTCCAGTCATTGCACTCTCCGCTACTGCAAGCTCTTCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 90 bp GACACACACAACTGGATCACTGCGACTCTGCTTCTTTTCCCTGGCTaGTATATGGGCGGCCATTCCATGTCAAATCCCACCACATCGCCA +
Preference number: 6 (lower is better)
Translates to: DTHNWITATLLLFPG*YMGGHSMSNPTTSP
Trigger: TGGCGATGTGGTGGGATTTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTTGTGTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 90 bp GCGTTGGGTTCCGGCAATAAATGGTCCTCTTCTTCCTGCTCCTCTTaGATGGCTTCATTTCCGTGTCCATCTTCCTCCTCAGGAGGAAGA +
Preference number: 6 (lower is better)
Translates to: ALGSGNKWSSSSCSS*MASFPCPSSSSGGR
Trigger: TCTTCCTCCTGAGGAGGAAGATGGACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCATTTATTGCCGGAACCCAACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp GAATGCTTGTGGCCCAAAGTCTTGGGATGCGTCCTCTaGGTTGTTAGCAGTAAGGCAATGATTCAGCCTGGG +
Preference number: 6 (lower is better)
Translates to: ECLWPKVLGCVL*VVSSKAMIQPG
Trigger: CCCAGGCTGAATCATTGCCTTACTGCTAACAACTCAGAGGACGCATCCCAAGACTTTGGGCCACAAGCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 72 bp TGCTCTCAGACACACACAACTGGATCACTGCGACTCTaGTTCTTTTCCCTGGCTTGTATATGGGCGGCCATT +
Preference number: 6 (lower is better)
Translates to: CSQTHTTGSLRL*FFSLACIWAAI
Trigger: AATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTTGTGTGTGTCTGAGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CCA 72 bp GCAGACAGTAGCTGGAATGCTTGTGGCCCAAAGTCTTaGGATGCGTCCTCTGAGTTGTTAGCAGTAAGGCAA +
Preference number: 6 (lower is better)
Translates to: ADSSWNACGPKS*DASSELLAVRQ
Trigger: TTGCCTTACTGCTAACAACTCAGAGGACGCATCCCAAGACTTTGGGCCACAAGCATTCCAGCTACTGTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp AACTGGATCACTGCGACTCTGCTTCTTTTCCCTGGCTaGTATATGGGCGGCCATTCCATGTCAAATCCCACC +
Preference number: 6 (lower is better)
Translates to: NWITATLLLFPG*YMGGHSMSNPT
Trigger: GGTGGGATTTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 90 bp ACCAGACCATTGAGGCTCCAGGTCTCTGCGCACTTCAACTTTTCATaGGCAACATCCGTCAGCTCCACAAAACTCTCCAACTTGACGTCA +
Preference number: 6 (lower is better)
Translates to: TRPLRLQVSAHFNFS*ATSVSSTKLSNLTS
Trigger: TGACGTCAAGTTGGAGAGTTTTGTGGAGCTGACGGATGTTGCCAATGAAAAGTTGAAGTGCGCAGAGACCTGGAGCCTCAATGGTCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS TCA 72 bp TGGCAACATCCGTCAGCTCCACAAAACTCTCCAACTTaGCGTCAAAATCACGCAGAAGTTTCCACTGGTCCC +
Preference number: 6 (lower is better)
Translates to: WQHPSAPQNSPT*RQNHAEVSTGP
Trigger: GGGACCAGTGGAAACTTCTGCGTGATTTTGACGTCAAGTTGGAGAGTTTTGTGGAGCTGACGGATGTTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS GCA 72 bp GACGTGTTTAACCAGACCATTGAGGCTCCAGGTCTCTaGGCACTTCAACTTTTCATTGGCAACATCCGTCAG +
Preference number: 6 (lower is better)
Translates to: DVFNQTIEAPGL*ALQLFIGNIRQ
Trigger: CTGACGGATGTTGCCAATGAAAAGTTGAAGTGCGCAGAGACCTGGAGCCTCAATGGTCTGGTTAAACACGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS GCA 72 bp GCGTTGGGTTCCGGCAATAAATGGTCCTCTTCTTCCTaGTCCTCTTTGATGGCTTCATTTCCGTGTCCATCT +
Preference number: 6 (lower is better)
Translates to: ALGSGNKWSSSS*SSLMASFPCPS
Trigger: AGATGGACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCATTTATTGCCGGAACCCAACGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp ACACAACTGGATCACTGCGACTCTGCTTCTTTTCCCTaGCTTGTATATGGGCGGCCATTCCATGTCAAATCC +
Preference number: 6 (lower is better)
Translates to: TQLDHCDSASFP*LVYGRPFHVKS
Trigger: GGATTTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGATCCAGTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 72 bp TTGAGGCTCCAGGTCTCTGCGCACTTCAACTTTTCATaGGCAACATCCGTCAGCTCCACAAAACTCTCCAAC +
Preference number: 6 (lower is better)
Translates to: LRLQVSAHFNFS*ATSVSSTKLSN
Trigger: GTTGGAGAGTTTTGTGGAGCTGACGGATGTTGCCAATGAAAAGTTGAAGTGCGCAGAGACCTGGAGCCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 90 bp GCAAACCACTCGGGTAATTTTCTCTTTGACTCTGAAGATGATGCCTaGGTCTCGGTGACCGCCTCTTTGCTCTCCTTACAGCTCTCACAA +
Preference number: 6 (lower is better)
Translates to: ANHSGNFLFDSEDDA*VSVTASLLSLQLSQ
Trigger: TTGTGAGAGCTGTAAGGAGAGCAAAGAGGCGGTCACCGAGACCAAGGCATCATCTTCAGAGTCAAAGAGAAAATTACCCGAGTGGTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp AGCAGAACTTTCCTTGGAAACATCTCTTCATTAGCTTaGAGGAGAAGGCTCGGAGGAGACTGCGAACTGGCT +
Preference number: 6 (lower is better)
Translates to: SRTFLGNISSLA*RRRLGGDCELA
Trigger: AGCCAGTTCGCAGTCTCCTCCGAGCCTTCTCCTTCAAGCTAATGAAGAGATGTTTCCAAGGAAAGTTCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp TTCTCAGCTATGCTGTGTAAGGGCATTTTCTTTTCCTaGAATAGAGTGTATGTGACGGCCACAGACTGGGGG +
Preference number: 6 (lower is better)
Translates to: FSAMLCKGIFFS*NRVYVTATDWG
Trigger: CCCCCAGTCTGTGGCCGTCACATACACTCTATTCCAGGAAAAGAAAATGCCCTTACACAGCATAGCTGAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp ATGAGCTGCCGGTATCAGCTGAGGGCACATTTCCTTTaGCAAACCACTCGGGTAATTTTCTCTTTGACTCTG +
Preference number: 6 (lower is better)
Translates to: MSCRYQLRAHFL*QTTRVIFSLTL
Trigger: CAGAGTCAAAGAGAAAATTACCCGAGTGGTTTGCCAAAGGAAATGTGCCCTCAGCTGATACCGGCAGCTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp TTGGCAACATCCGTCAGCTCCACAAAACTCTCCAACTaGACGTCAAAATCACGCAGAAGTTTCCACTGGTCC +
Preference number: 6 (lower is better)
Translates to: LATSVSSTKLSN*TSKSRRSFHWS
Trigger: GGACCAGTGGAAACTTCTGCGTGATTTTGACGTCAAGTTGGAGAGTTTTGTGGAGCTGACGGATGTTGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 72 bp TCCGGCAATAAATGGTCCTCTTCTTCCTGCTCCTCTTaGATGGCTTCATTTCCGTGTCCATCTTCCTCCTCA +
Preference number: 6 (lower is better)
Translates to: SGNKWSSSSCSS*MASFPCPSSSS
Trigger: TGAGGAGGAAGATGGACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCATTTATTGCCGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp TCGGGTAATTTTCTCTTTGACTCTGAAGATGATGCCTaGGTCTCGGTGACCGCCTCTTTGCTCTCCTTACAG +
Preference number: 6 (lower is better)
Translates to: SGNFLFDSEDDA*VSVTASLLSLQ
Trigger: CTGTAAGGAGAGCAAAGAGGCGGTCACCGAGACCAAGGCATCATCTTCAGAGTCAAAGAGAAAATTACCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 90 bp TTCAGCTATGAGATGGTGAGAAAGGGTCTTCCACCAACTTTCTGCTaGCTCCTTTCCAGCACCAAAGAGCCTGTGACCCCGATATTTATC +
Preference number: 6 (lower is better)
Translates to: FSYEMVRKGLPPTFC*LLSSTKEPVTPIFI
Trigger: GATAAATATCGGGGTCACAGGCTCTTTGGTGCTGGAAAGGAGCAAGCAGAAAGTTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 90 bp GCTGCATACAGTTTCTGGTCCTCAGTGAGGGGGAAATTACTCCAATaGCTGCAGCGGATGGACTTGTCTTTCAAAAGTTGTTTCCCTAAG +
Preference number: 6 (lower is better)
Translates to: AAYSFWSSVRGKLLQ*LQRMDLSFKSCFPK
Trigger: CTTAGGGAAACAACTTTTGAAAGACAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCCCCCTCACTGAGGACCAGAAACTGTATGCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS TCA 72 bp AGACGCCCATTGGTTCCCATTTCCAACCATGTAGAGTaGGTGGGTTCCACCACGTCACTATTTAGGTTTTCT +
Preference number: 6 (lower is better)
Translates to: RRPLVPISNHVE*VGSTTSLFRFS
Trigger: AGAAAACCTAAATAGTGACGTGGTGGAACCCACTCACTCTACATGGTTGGAAATGGGAACCAATGGGCGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp GAACTTGCCTTTCGGACGAGAAACGGCTTTAGATCCTaGAGGATGTTCCCTGTTTTCCGTCCAACTTCTAAG +
Preference number: 6 (lower is better)
Translates to: ELAFRTRNGFRS*RMFPVFRPTSK
Trigger: CTTAGAAGTTGGACGGAAAACAGGGAACATCCTTCAGGATCTAAAGCCGTTTCTCGTCCGAAAGGCAAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp TGGGATGCGTCCTCTGAGTTGTTAGCAGTAAGGCAATaGTTCAGCCTGGGCCTGCAATTATCACAGCATTTT +
Preference number: 6 (lower is better)
Translates to: WDASSELLAVRQ*FSLGLQLSQHF
Trigger: AAAATGCTGTGATAATTGCAGGCCCAGGCTGAATCATTGCCTTACTGCTAACAACTCAGAGGACGCATCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp GGAACTTCTACCAAGAATCCTTCAGCTATGAGATGGTaGGAAAGGGTCTTCCACCAACTTTCTGCTTGCTCC +
Preference number: 6 (lower is better)
Translates to: GTSTKNPSAMRW*ERVFHQLSACS
Trigger: GGAGCAAGCAGAAAGTTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGAAGGATTCTTGGTAGAAGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp CAGGCTGGAACATTGGACAGCTCAAGCTGGAGGACTTaGTCTTCCATTAAGGAAATGAGAGGTGAAATGACA +
Preference number: 6 (lower is better)
Translates to: QAGTLDSSSWRT*SSIKEMRGEMT
Trigger: TGTCATTTCACCTCTCATTTCCTTAATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp CCAAGTAAACAGGCTGGAACATTGGACAGCTCAAGCTaGAGGACTTGGTCTTCCATTAAGGAAATGAGAGGT +
Preference number: 6 (lower is better)
Translates to: PSKQAGTLDSSS*RTWSSIKEMRG
Trigger: ACCTCTCATTTCCTTAATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTGTTTACTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CCA 72 bp TTGACTGTGCAGATCCAAGTAAACAGGCTGGAACATTaGACAGCTCAAGCTGGAGGACTTGGTCTTCCATTA +
Preference number: 6 (lower is better)
Translates to: LTVQIQVNRLEH*TAQAGGLGLPL
Trigger: TAATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTGTTTACTTGGATCTGCACAGTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp TTTGACTGTGCAGATCCAAGTAAACAGGCTGGAACATaGGACAGCTCAAGCTGGAGGACTTGGTCTTCCATT +
Preference number: 6 (lower is better)
Translates to: FDCADPSKQAGT*DSSSWRTWSSI
Trigger: AATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTGTTTACTTGGATCTGCACAGTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp GTTCCCATAATGTCCAAGGAGGCCTTCTGCAGACATTaGTCCTCAAAATGGGACAAGATGATTCGTCGCCTA +
Preference number: 6 (lower is better)
Translates to: VPIMSKEAFCRH*SSKWDKMIRRL
Trigger: TAGGCGACGAATCATCTTGTCCCATTTTGAGGACAAATGTCTGCAGAAGGCCTCCTTGGACATTATGGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 90 bp TCCTCAGTGAGGGGGAAATTACTCCAATTGCTGCAGCGGATGGACTaGTCTTTCAAAAGTTGTTTCCCTAAGACGTGTTTAACCAGACCA +
Preference number: 6 (lower is better)
Translates to: SSVRGKLLQLLQRMD*SFKSCFPKTCLTRP
Trigger: TGGTCTGGTTAAACACGTCTTAGGGAAACAACTTTTGAAAGACAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCCCCCTCACTGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS TCA 72 bp CAGGAACCCTCTGGAGAGTTTCCAAATTTCTGCAAGTaGCAGGAAAACGATTGGCTAGGTCCCTCATTTCTT +
Preference number: 6 (lower is better)
Translates to: QEPSGEFPNFCK*QENDWLGPSFL
Trigger: AAGAAATGAGGGACCTAGCCAATCGTTTTCCTGTCACTTGCAGAAATTTGGAAACTCTCCAGAGGGTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp CCTTCTGCAGACATTTGTCCTCAAAATGGGACAAGATaGTTCGTCGCCTACACTGACTGGAGTGAAGGTATT +
Preference number: 6 (lower is better)
Translates to: PSADICPQNGTR*FVAYTDWSEGI
Trigger: AATACCTTCACTCCAGTCAGTGTAGGCGACGAATCATCTTGTCCCATTTTGAGGACAAATGTCTGCAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp AGTTTCTGGTCCTCAGTGAGGGGGAAATTACTCCAATaGCTGCAGCGGATGGACTTGTCTTTCAAAAGTTGT +
Preference number: 6 (lower is better)
Translates to: SFWSSVRGKLLQ*LQRMDLSFKSC
Trigger: ACAACTTTTGAAAGACAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCCCCCTCACTGAGGACCAGAAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS TCA 72 bp TTTCCTTGGGAACTTCTACCAAGAATCCTTCAGCTATaGGATGGTGAGAAAGGGTCTTCCACCAACTTTCTG +
Preference number: 6 (lower is better)
Translates to: FPWELLPRILQL*DGEKGSSTNFL
Trigger: CAGAAAGTTGGTGGAAGACCCTTTCTCACCATCTCATAGCTGAAGGATTCTTGGTAGAAGTTCCCAAGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp CGGAACCACTCTGAAGAATCTCAATCGCCATGTGGATaGGGTACGTGTCTAAGTTTTCAGGAACTAACATTC +
Preference number: 6 (lower is better)
Translates to: RNHSEESQSPCG*GTCLSFQELTF
Trigger: GAATGTTAGTTCCTGAAAACTTAGACACGTACCTCATCCACATGGCGATTGAGATTCTTCAGAGTGGTTCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS GCA 72 bp TTGATAGATGATAAGACCAGCATAAGCATCAGTGGCTaGATACAGTTTCTGGTCCTCAGTGAGGGGGAAATT +
Preference number: 6 (lower is better)
Translates to: LIDDKTSISISG*IQFLVLSEGEI
Trigger: AATTTCCCCCTCACTGAGGACCAGAAACTGTATGCAGCCACTGATGCTTATGCTGGTCTTATCATCTATCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CCA 72 bp CAATTAATTTGCTTTGCGTTGGGTTCCGGCAATAAATaGTCCTCTTCTTCCTGCTCCTCTTTGATGGCTTCA +
Preference number: 6 (lower is better)
Translates to: QLICFALGSGNK*SSSSCSSLMAS
Trigger: TGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGACCATTTATTGCCGGAACCCAACGCAAAGCAAATTAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp CTTCTGAACGCAGGCCTTTTCTTCTGTAGCACATCTTaGACTCTGCATAGACATCCATTCTGGAAATTTCCG +
Preference number: 6 (lower is better)
Translates to: LLNAGLFFCSTS*TLHRHPFWKFP
Trigger: CGGAAATTTCCAGAATGGATGTCTATGCAGAGTCAAAGATGTGCTACAGAAGAAAAGGCCTGCGTTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 72 bp AAAAGTTGTTTCCCTAAGACGTGTTTAACCAGACCATaGAGGCTCCAGGTCTCTGCGCACTTCAACTTTTCA +
Preference number: 6 (lower is better)
Translates to: KSCFPKTCLTRP*RLQVSAHFNFS
Trigger: TGAAAAGTTGAAGTGCGCAGAGACCTGGAGCCTCAATGGTCTGGTTAAACACGTCTTAGGGAAACAACTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 72 bp GTAGTCGGTCTCATTTTAGCCATGTCCAGCAGAACCTaGTTTGTTGCTAAAATAGCTGGAGGTACATCCATC +
Preference number: 6 (lower is better)
Translates to: VVGLILAMSSRT*FVAKIAGGTSI
Trigger: GATGGATGTACCTCCAGCTATTTTAGCAACAAACAAGGTTCTGCTGGACATGGCTAAAATGAGACCGACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 90 bp TTGTCTTTCAAAAGTTGTTTCCCTAAGACGTGTTTAACCAGACCATaGAGGCTCCAGGTCTCTGCGCACTTCAACTTTTCATTGGCAACA +
Preference number: 6 (lower is better)
Translates to: LSFKSCFPKTCLTRP*RLQVSAHFNFSLAT
Trigger: TGTTGCCAATGAAAAGTTGAAGTGCGCAGAGACCTGGAGCCTCAATGGTCTGGTTAAACACGTCTTAGGGAAACAACTTTTGAAAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 90 bp ACCCTCTGGAGAGTTTCCAAATTTCTGCAAGTGACAGGAAAACGATaGGCTAGGTCCCTCATTTCTTCGGAGATTGAATTCAACTGTTTC +
Preference number: 6 (lower is better)
Translates to: TLWRVSKFLQVTGKR*ARSLISSEIEFNCF
Trigger: GAAACAGTTGAATTCAATCTCCGAAGAAATGAGGGACCTAGCCAATCGTTTTCCTGTCACTTGCAGAAATTTGGAAACTCTCCAGAGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS TCA 72 bp TACAGATTTGGCCGATCAAATCCAGTGCAGGTGATCTaGGGGTCTTTCAGGTTTAAGCAGCTTATAATGTCT +
Preference number: 6 (lower is better)
Translates to: YRFGRSNPVQVI*GSFRFKQLIMS
Trigger: AGACATTATAAGCTGCTTAAACCTGAAAGACCCTCAGATCACCTGCACTGGATTTGATCGGCCAAATCTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp AGGGGGAAATTACTCCAATTGCTGCAGCGGATGGACTaGTCTTTCAAAAGTTGTTTCCCTAAGACGTGTTTA +
Preference number: 6 (lower is better)
Translates to: RGKLLQLLQRMD*SFKSCFPKTCL
Trigger: TAAACACGTCTTAGGGAAACAACTTTTGAAAGACAAGTCCATCCGCTGCAGCAATTGGAGTAATTTCCCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 72 bp GAAAACGATTGGCTAGGTCCCTCATTTCTTCGGAGATaGAATTCAACTGTTTCTTCATCTCCAGAGGTAGGT +
Preference number: 6 (lower is better)
Translates to: ENDWLGPSFLRR*NSTVSSSPEVG
Trigger: ACCTACCTCTGGAGATGAAGAAACAGTTGAATTCAATCTCCGAAGAAATGAGGGACCTAGCCAATCGTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
CDS CAA 72 bp AGAGTTTCCAAATTTCTGCAAGTGACAGGAAAACGATaGGCTAGGTCCCTCATTTCTTCGGAGATTGAATTC +
Preference number: 6 (lower is better)
Translates to: RVSKFLQVTGKR*ARSLISSEIEF
Trigger: GAATTCAATCTCCGAAGAAATGAGGGACCTAGCCAATCGTTTTCCTGTCACTTGCAGAAATTTGGAAACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2
CDS CAA 72 bp AACATTCTGATGAGTTTAACTTTATACATATCTGAGTaGATGGGAGGGTTTCGGATGACATCCATAATAATC +
Preference number: 6 (lower is better)
Translates to: NILMSLTLYISE*MGGFRMTSIII
Trigger: GATTATTATGGATGTCATCCGAAACCCTCCCATCAACTCAGATATGTATAAAGTTAAACTCATCAGAATGTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033990.7
ENSMUST00000033991.13
ENSMUST00000211498.2