RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WNT9A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000126

Ensembl transcript IDs: ENSMUST00000000128.10, ENSMUST00000108783.4

Found 191 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCAGGGTCAGAGGGCCGGAGGCTGCACCCTGGGGATGGAGTGGCTaGCCTCTCCTAGTGGTTTGGCTCTCTGAAGAAGACAGTGCTGGC +
Preference number: 1 (lower is better)
Translates to: LRVRGPEAAPWGWSG*PLLVVWLSEEDSAG
Trigger: GCCAGCACTGTCTTCTTCAGAGAGCCAAACCACTAGGAGAGGGCAGCCACTCCATCCCCAGGGTGCAGCCTCCGGCCCTCTGACCCTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 90 bp GAGGCTGCACCCTGGGGATGGAGTGGCTGCCCTCTCCTAGTGGTTTaGCTCTCTGAAGAAGACAGTGCTGGCATCAGGCTGCTGGGCCAG +
Preference number: 1 (lower is better)
Translates to: EAAPWGWSGCPLLVV*LSEEDSAGIRLLGQ
Trigger: CTGGCCCAGCAGCCTGATGCCAGCACTGTCTTCTTCAGAGAGCCAAACCACTAGGAGAGGGCAGCCACTCCATCCCCAGGGTGCAGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR TCA 90 bp ACCCTGGGGATGGAGTGGCTGCCCTCTCCTAGTGGTTTGGCTCTCTaGAGAAGACAGTGCTGGCATCAGGCTGCTGGGCCAGAAGGGCAG +
Preference number: 1 (lower is better)
Translates to: TLGMEWLPSPSGLAL*RRQCWHQAAGPEGQ
Trigger: CTGCCCTTCTGGCCCAGCAGCCTGATGCCAGCACTGTCTTCTTCAGAGAGCCAAACCACTAGGAGAGGGCAGCCACTCCATCCCCAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 90 bp TACACTCCCTGCAGAAAGGCTGGCAGGGCCGTTGGAGTCAGCTCCTaGAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCG +
Preference number: 1 (lower is better)
Translates to: YTPCRKAGRAVGVSS*RCRILLVLCAKSTP
Trigger: CGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGAGCTGACTCCAACGGCCCTGCCAGCCTTTCTGCAGGGAGTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 90 bp TCCATGCCTCAGAGGAAGCCAAGAGGCACAGAGGGCCAGTCAACATaGTGGTCCCTGACAAGGGCTATACTGATGTGTCAGGGACAGAGG +
Preference number: 1 (lower is better)
Translates to: SMPQRKPRGTEGQST*WSLTRAILMCQGQR
Trigger: CCTCTGTCCCTGACACATCAGTATAGCCCTTGTCAGGGACCAGCATGTTGACTGGCCCTCTGTGCCTCTTGGCTTCCTCTGAGGCATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 90 bp ACCTGCAGGGCTCACTCCATGCAGATTAAGACCCTTTGCACTATGTaGAAAGCCTACACTCCCTGCAGAAAGGCTGGCAGGGCCGTTGGA +
Preference number: 1 (lower is better)
Translates to: TCRAHSMQIKTLCTM*KAYTPCRKAGRAVG
Trigger: TCCAACGGCCCTGCCAGCCTTTCTGCAGGGAGTGTAGGCTTTGCACATAGTGCAAAGGGTCTTAATCTGCATGGAGTGAGCCCTGCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 90 bp GCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGCATTACTaGAACGCTCTCGGGTCAGGGGGCCAAGCTCAGGCCCAAGGCATA +
Preference number: 1 (lower is better)
Translates to: AILMCQGQRQLRKHY*NALGSGGQAQAQGI
Trigger: TATGCCTTGGGCCTGAGCTTGGCCCCCTGACCCGAGAGCGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 90 bp ATGCCTCAGAGGAAGCCAAGAGGCACAGAGGGCCAGTCAACATGCTaGTCCCTGACAAGGGCTATACTGATGTGTCAGGGACAGAGGCAA +
Preference number: 1 (lower is better)
Translates to: MPQRKPRGTEGQSTC*SLTRAILMCQGQRQ
Trigger: TTGCCTCTGTCCCTGACACATCAGTATAGCCCTTGTCAGGGACCAGCATGTTGACTGGCCCTCTGTGCCTCTTGGCTTCCTCTGAGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 90 bp GCACCTCTTCATCCTTGTAGACCTTCTGTGTTGTTTGTAACCCTGTaGCCCACACAGCAGGATAGGCTGGACCTGCAGGGCTCACTCCAT +
Preference number: 1 (lower is better)
Translates to: APLHPCRPSVLFVTL*PTQQDRLDLQGSLH
Trigger: ATGGAGTGAGCCCTGCAGGTCCAGCCTATCCTGCTGTGTGGGGCACAGGGTTACAAACAACACAGAAGGTCTACAAGGATGAAGAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 90 bp GGGAAGGTAGAATTGGGGAGTGGATTCCAGAAGCCTTGTGGGCCATaGCTAGGCTCTATCGCTTCATTTCTTTCCAAACATGACCTTGAT +
Preference number: 1 (lower is better)
Translates to: GKVELGSGFQKPCGP*LGSIASFLSKHDLD
Trigger: ATCAAGGTCATGTTTGGAAAGAAATGAAGCGATAGAGCCTAGCCATGGCCCACAAGGCTTCTGGAATCCACTCCCCAATTCTACCTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp GAAGAGAGGGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTGGGGCAGCTCCGGAGGCTGCACCCTaGGGATGGAGTGGCTGCCCT +
Preference number: 2 (lower is better)
Translates to: EEREGKASQTGLTGPGAAPEAAP*GWSGCP
Trigger: AGGGCAGCCACTCCATCCCCAGGGTGCAGCCTCCGG...AGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCCCTCTCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp GAAGAGAGGGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTGGGGCAGCTGATACTCCACGGAAGTaGTCAGGGTCAGAGGGCCGG +
Preference number: 2 (lower is better)
Translates to: EEREGKASQTGLTGPGAADTPRK*SGSEGR
Trigger: CCGGCCCTCTGACCCTGAGCACTTCCGTGGAGTATC...AGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCCCTCTCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGCCAGACTGGCTTGACTaGGCCTGGGGCAGCTCAGAG +
Preference number: 2 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWPDWLD*AWGSSE
Trigger: CTCTGAGCTGCCCCAGGCCCAGTCAAGCCAGTCTGG...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAAGCCTACACTCCCTaGAGAAAGGCTGGCAGGGCC +
Preference number: 2 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWKAYTP*RKAGRA
Trigger: GGCCCTGCCAGCCTTTCTGCAGGGAGTGTAGGCTTT...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGCAGCAACCTGATCTCTaGACCTGCAGGGCACAGAGC +
Preference number: 2 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWQQPDL*TCRAQS
Trigger: GCTCTGTGCCCTGCAGGTGCAGAGATCAGGTTGCTG...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACCCGGAGGCTGCACCCTaGGGATGGAGTGGCTGCCCT +
Preference number: 2 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYPEAAP*GWSGCP
Trigger: AGGGCAGCCACTCCATCCCCAGGGTGCAGCCTCCGG...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGCAAGTCTGGGTCTTCTaGACCCCTGGTGCTCCAAGG +
Preference number: 2 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWQVWVF*TPGAPR
Trigger: CCTTGGAGCACCAGGGGTCCAGAAGACCCAGACTTG...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR TCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAGGCCAACTGGATGCTaGCCATGCCAGCTCGGAATA +
Preference number: 2 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWRPTGC*PCQLGI
Trigger: TATTCCGAGCTGGCATGGTCAGCATCCAGTTGGCCT...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp CAGGCTGCTGGGCCAGAAGGGCAGCCATGCGATTATGAAGGTGCACCTGCCCTCTCTTCTGGTGCTGTGTaGAAAGTCCACACCGCTTGC +
Preference number: 2 (lower is better)
Translates to: QAAGPEGQPCDYEGAPALSSGAV*KVHTAC
Trigger: GCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGA...GAGGGCAGGTGCACCTTCATAATCGCATGGCTGCCCTTCTGGCCCAGCAGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCTTCTGGACCCCTGGTaGTCCAAGGCACACATAGCC +
Preference number: 2 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRLLDPW*SKAHIA
Trigger: GGCTATGTGTGCCTTGGAGCACCAGGGGTCCAGAAG...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp CAACGCTCTCGGGTCAGGGGGCCAAGCTCAGGCCCAAGGCATAAGCAAAAGGGTCGAGAGACAGCCAACTaGCTGTCTGTATACCAGGGC +
Preference number: 2 (lower is better)
Translates to: QRSRVRGPSSGPRHKQKGRETAN*LSVYQG
Trigger: GCCCTGGTATACAGACAGCCAGTTGGCTGTCTCTCG...ACCCTTTTGCTTATGCCTTGGGCCTGAGCTTGGCCCCCTGACCCGAGAGCGTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR TCA 90 bp CCATACCGCAGAGGGAACACAGGCCAACTGGATGCTGACCATGCCAGCTCGGAACTATATCCAGCAACCTaGTCTCTGCACCTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: PYRRGNTGQLDADHASSELYPAT*SLHLQG
Trigger: GCCCTGCAGGTGCAGAGATCAGGTTGCTGGATATAG...TTCCGAGCTGGCATGGTCAGCATCCAGTTGGCCTGTGTTCCCTCTGCGGTATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR TCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCTATATCCAGCAACCTaGTCTCTGCACCTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRLYPAT*SLHLQG
Trigger: GCCCTGCAGGTGCAGAGATCAGGTTGCTGGATATAG...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR TCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGGGACAATCAAAAAGCTaGCCCTGCCCCTGTCTCCGT +
Preference number: 2 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRGQSKS*PCPCLR
Trigger: ACGGAGACAGGGGCAGGGTCAGCTTTTTGATTGTCC...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp GGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCTCTGATACTCCACGGAAGTaGTCAGGGTCAGAGGGCCGG +
Preference number: 2 (lower is better)
Translates to: GAGQLLTLLPIEEDQRGSDTPRK*SGSEGR
Trigger: CCGGCCCTCTGACCCTGAGCACTTCCGTGGAGTATC...AGAGCCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGGTCATCTCTGCCACCTaGCCACACTCTAACCCACAC +
Preference number: 2 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRVISAT*PHSNPH
Trigger: GTGTGGGTTAGAGTGTGGGCAGGTGGCAGAGATGAC...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCGAGAGACAGCCAACTaGCTGTCTGTATACCAGGGC +
Preference number: 2 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRRETAN*LSVYQG
Trigger: GCCCTGGTATACAGACAGCCAGTTGGCTGTCTCTCG...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGGGTCTTCTGGACCCCTaGTGCTCCAAGGCACACATA +
Preference number: 2 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRGLLDP*CSKAHI
Trigger: TATGTGTGCCTTGGAGCACCAGGGGTCCAGAAGACC...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR TCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAGGGACAGAGGCAACTaGGAAAGCATTACTGCAACG +
Preference number: 2 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWRDRGN*ESITAT
Trigger: CGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCT...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp CCATACCGCAGAGGGAACACAGGCCAACTGGATGCTGACCATGCCAGCTCGGAATCTTCTGGTGCTGTGTaGAAAGTCCACACCGCTTGC +
Preference number: 2 (lower is better)
Translates to: PYRRGNTGQLDADHASSESSGAV*KVHTAC
Trigger: GCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGA...TTCCGAGCTGGCATGGTCAGCATCCAGTTGGCCTGTGTTCCCTCTGCGGTATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp CCATACCGCAGAGGGAACACAGGCCAACTGGATGCTGACCATGCCAGCTCGGAACTGAGAAAGCATTACTaGAACGCTCTCGGGTCAGGG +
Preference number: 2 (lower is better)
Translates to: PYRRGNTGQLDADHASSELRKHY*NALGSG
Trigger: CCCTGACCCGAGAGCGTTGCAGTAATGCTTTCTCAG...TTCCGAGCTGGCATGGTCAGCATCCAGTTGGCCTGTGTTCCCTCTGCGGTATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCACCAGACTGGCTTGACTaGGCCTGGGGCAGCTCAGAG +
Preference number: 2 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAAPDWLD*AWGSSE
Trigger: CTCTGAGCTGCCCCAGGCCCAGTCAAGCCAGTCTGG...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp CCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGCATTCATCTGTCTCCGTGCCCATaGCTCCAGGACCCCCAAATC +
Preference number: 2 (lower is better)
Translates to: PPASVYCHPLTSWKRGIHLSPCP*LQDPQI
Trigger: GATTTGGGGGTCCTGGAGCCATGGGCACGGAGACAG...ATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGAACACAGGCCAACTaGATGCTGACCATGCCAGCT +
Preference number: 2 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRGTQAN*MLTMPA
Trigger: AGCTGGCATGGTCAGCATCCAGTTGGCCTGTGTTCC...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp CAGGCTGCTGGGCCAGAAGGGCAGCCATGCGATTATGAAGGTGCACCTGCCCTCGTAGAATTCTTCTGGTaGTGTGTGCAAAGTCCACAC +
Preference number: 2 (lower is better)
Translates to: QAAGPEGQPCDYEGAPALVEFFW*CVQSPH
Trigger: GTGTGGACTTTGCACACAGCACCAGAAGAATTCTAC...GAGGGCAGGTGCACCTTCATAATCGCATGGCTGCCCTTCTGGCCCAGCAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp CCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGCATTCATCAGCAACCTGATCTCTaGACCTGCAGGGCACAGAGC +
Preference number: 2 (lower is better)
Translates to: PPASVYCHPLTSWKRGIHQQPDL*TCRAQS
Trigger: GCTCTGTGCCCTGCAGGTGCAGAGATCAGGTTGCTG...ATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTCCTCCATACCTCCCTTaGGGACACAGAGCAAGAATG +
Preference number: 2 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRPPYLP*GHRARM
Trigger: CATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGG...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CAA 90 bp CCAAGTGTGCTAGGGGCACCTCTTCATCCTTGTAGACCTTCTGTGTaGTTTGTAACCCTGTGCCCCACACAGCAGGATAGGCTGGACCTG +
Preference number: 2 (lower is better)
Translates to: PSVLGAPLHPCRPSV*FVTLCPTQQDRLDL
Trigger: CAGGTCCAGCCTATCCTGCTGTGTGGGGCACAGGGTTACAAACAACACAGAAGGTCTACAAGGATGAAGAGGTGCCCCTAGCACACTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTACCCTTTGCACTATGTaGAAAGCCTACACTCCCTGC +
Preference number: 2 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRTLCTM*KAYTPC
Trigger: GCAGGGAGTGTAGGCTTTGCACATAGTGCAAAGGGT...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGCCAGAAGGGCAGCCATaGGATTATGAAGGTGCACCT +
Preference number: 2 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLPEGQP*DYEGAP
Trigger: AGGTGCACCTTCATAATCGCATGGCTGCCCTTCTGG...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCATGGCTTGACTGGGCCTaGGGCAGCTCAGAGGGAAAA +
Preference number: 2 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAAWLDWA*GSSEGK
Trigger: TTTTCCCTCTGAGCTGCCCCAGGCCCAGTCAAGCCA...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACCTGAGAAAGCATTACTaGAACGCTCTCGGGTCAGGG +
Preference number: 2 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYLRKHY*NALGSG
Trigger: CCCTGACCCGAGAGCGTTGCAGTAATGCTTTCTCAG...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp TTCTTCCTCTGGACTGGTAGGCTCCTTTCCCCAGAACTGAAAGAGATGAAGCTCGAGGGCCAGTCAACATaGTGGTCCCTGACAAGGGCT +
Preference number: 2 (lower is better)
Translates to: FFLWTGRLLSPELKEMKLEGQST*WSLTRA
Trigger: AGCCCTTGTCAGGGACCAGCATGTTGACTGGCCCTC...GAGCTTCATCTCTTTCAGTTCTGGGGAAAGGAGCCTACCAGTCCAGAGGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp TTCTTCCTCTGGACTGGTAGGCTCCTTTCCCCAGAACTGAAAGAGATGAAGCTCTGGGGATGGAGTGGCTaGCCTCTCCTAGTGGTTTGG +
Preference number: 2 (lower is better)
Translates to: FFLWTGRLLSPELKEMKLWGWSG*PLLVVW
Trigger: CCAAACCACTAGGAGAGGGCAGCCACTCCATCCCCA...GAGCTTCATCTCTTTCAGTTCTGGGGAAAGGAGCCTACCAGTCCAGAGGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR TCA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACAGGGACAGAGGCAACTaGGAAAGCATTACTGCAACG +
Preference number: 2 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYRDRGN*ESITAT
Trigger: CGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCT...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACACCCTTTGCACTATGTaGAAAGCCTACACTCCCTGC +
Preference number: 2 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYTLCTM*KAYTPC
Trigger: GCAGGGAGTGTAGGCTTTGCACATAGTGCAAAGGGT...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CAA 90 bp TCTGACCCTGGGGAAGGTAGAATTGGGGAGTGGATTCCAGAAGCCTaGTGGGCCATGGCTAGGCTCTATCGCTTCATTTCTTTCCAAACA +
Preference number: 2 (lower is better)
Translates to: SDPGEGRIGEWIPEA*WAMARLYRFISFQT
Trigger: TGTTTGGAAAGAAATGAAGCGATAGAGCCTAGCCATGGCCCACAAGGCTTCTGGAATCCACTCCCCAATTCTACCTTCCCCAGGGTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CAA 90 bp GCAAGACCTGATGACAGCAAGTGTGTCTGTCCCTCCATACCTCCCTaGGGGACACAGAGCAAGAATGGCTTCCTGAGATGGACAATCAAA +
Preference number: 2 (lower is better)
Translates to: ARPDDSKCVCPSIPP*GTQSKNGFLRWTIK
Trigger: TTTGATTGTCCATCTCAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACACTTGCTGTCATCAGGTCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR TCA 90 bp GGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCTCTGCAAGAATGGCTTCCTaGGATGGACAATCAAAAAGC +
Preference number: 2 (lower is better)
Translates to: GAGQLLTLLPIEEDQRGSARMAS*DGQSKS
Trigger: GCTTTTTGATTGTCCATCTCAGGAAGCCATTCTTGC...AGAGCCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCAATTCCAGAAGCCTTGTaGGCCATGGCTAGGCTCTAT +
Preference number: 2 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAAIPEAL*AMARLY
Trigger: ATAGAGCCTAGCCATGGCCCACAAGGCTTCTGGAAT...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR GCA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACGTAGAATTCTTCTGGTaGTGTGTGCAAAGTCCACAC +
Preference number: 2 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYVEFFW*CVQSPH
Trigger: GTGTGGACTTTGCACACAGCACCAGAAGAATTCTAC...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CCA 90 bp GGCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGCATTACTGCAACGCGGTGTAGAATTCTTCTaGTGCTGTGTGCAAAGTCCA +
Preference number: 2 (lower is better)
Translates to: GYTDVSGTEATEKALLQRGVEFF*CCVQSP
Trigger: TGGACTTTGCACACAGCACCAGAAGAATTCTACACC...GCGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 72 bp CTCCACGGAAGTGCTCAGGGTCAGAGGGCCGGAGGCTaGACCCTGGGGATGGAGTGGCTGCCCTCTCCTAGT +
Preference number: 3 (lower is better)
Translates to: LHGSAQGQRAGG*TLGMEWLPSPS
Trigger: ACTAGGAGAGGGCAGCCACTCCATCCCCAGGGTGCAGCCTCCGGCCCTCTGACCCTGAGCACTTCCGTGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp GGCCAGCCCCGCCCTCTGGGCCGAGAGACAGCCAACTaGCTGTCTGTATACCAGGGCCCAAGTGTGCTAGGG +
Preference number: 3 (lower is better)
Translates to: GQPRPLGRETAN*LSVYQGPSVLG
Trigger: CCCTAGCACACTTGGGCCCTGGTATACAGACAGCCAGTTGGCTGTCTCTCGGCCCAGAGGGCGGGGCTGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp GGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTaGGGCAGCTCAGAGGGAAAAGCCACAGATGAGGAG +
Preference number: 3 (lower is better)
Translates to: GRQGLPDWLDWA*GSSEGKATDEE
Trigger: CTCCTCATCTGTGGCTTTTCCCTCTGAGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CAA 90 bp GGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCTCTAGGCTGGCAGGGCCGTaGGAGTCAGCTCCTGCAGGT +
Preference number: 3 (lower is better)
Translates to: GAGQLLTLLPIEEDQRGSRLAGP*ESAPAG
Trigger: ACCTGCAGGAGCTGACTCCAACGGCCCTGCCAGCCT...AGAGCCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp CCCTGGGGATGGAGTGGCTGCCCTCTCCTAGTGGTTTaGCTCTCTGAAGAAGACAGTGCTGGCATCAGGCTG +
Preference number: 3 (lower is better)
Translates to: PWGWSGCPLLVV*LSEEDSAGIRL
Trigger: CAGCCTGATGCCAGCACTGTCTTCTTCAGAGAGCCAAACCACTAGGAGAGGGCAGCCACTCCATCCCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 72 bp AAGACCCTTTGCACTATGTGCAAAGCCTACACTCCCTaGAGAAAGGCTGGCAGGGCCGTTGGAGTCAGCTCC +
Preference number: 3 (lower is better)
Translates to: KTLCTMCKAYTP*RKAGRAVGVSS
Trigger: GGAGCTGACTCCAACGGCCCTGCCAGCCTTTCTGCAGGGAGTGTAGGCTTTGCACATAGTGCAAAGGGTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR TCA 72 bp CCCATACCGCAGAGGGAACACAGGCCAACTGGATGCTaGCCATGCCAGCTCGGAATATACACACACTCACAC +
Preference number: 3 (lower is better)
Translates to: PIPQREHRPTGC*PCQLGIYTHSH
Trigger: GTGTGAGTGTGTGTATATTCCGAGCTGGCATGGTCAGCATCCAGTTGGCCTGTGTTCCCTCTGCGGTATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 72 bp CAGAGGAAGCCAAGAGGCACAGAGGGCCAGTCAACATaGTGGTCCCTGACAAGGGCTATACTGATGTGTCAG +
Preference number: 3 (lower is better)
Translates to: QRKPRGTEGQST*WSLTRAILMCQ
Trigger: CTGACACATCAGTATAGCCCTTGTCAGGGACCAGCATGTTGACTGGCCCTCTGTGCCTCTTGGCTTCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp AGGAAGCCAAGAGGCACAGAGGGCCAGTCAACATGCTaGTCCCTGACAAGGGCTATACTGATGTGTCAGGGA +
Preference number: 3 (lower is better)
Translates to: RKPRGTEGQSTC*SLTRAILMCQG
Trigger: TCCCTGACACATCAGTATAGCCCTTGTCAGGGACCAGCATGTTGACTGGCCCTCTGTGCCTCTTGGCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp AAGAGTCCCCATACCGCAGAGGGAACACAGGCCAACTaGATGCTGACCATGCCAGCTCGGAATATACACACA +
Preference number: 3 (lower is better)
Translates to: KSPHTAEGTQAN*MLTMPARNIHT
Trigger: TGTGTGTATATTCCGAGCTGGCATGGTCAGCATCCAGTTGGCCTGTGTTCCCTCTGCGGTATGGGGACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CAA 90 bp TTCTTCCTCTGGACTGGTAGGCTCCTTTCCCCAGAACTGAAAGAGATGAAGCTCCCCTCCATACCTCCCTaGGGGACACAGAGCAAGAAT +
Preference number: 3 (lower is better)
Translates to: FFLWTGRLLSPELKEMKLPSIPP*GTQSKN
Trigger: ATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGG...GAGCTTCATCTCTTTCAGTTCTGGGGAAAGGAGCCTACCAGTCCAGAGGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR-3UTR CAA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCATCTGGCCTGCGGGAGTaGCTTCATCCAGAAAGACAT +
Preference number: 3 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAASGLRE*LHPERH
Trigger: ATGTCTTTCTGGATGAAGCAACTCCCGCAGGCCAGA...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 72 bp ACCTGCAGGGCTCACTCCATGCAGATTAAGACCCTTTaGACTATGTGCAAAGCCTACACTCCCTGCAGAAAG +
Preference number: 3 (lower is better)
Translates to: TCRAHSMQIKTL*TMCKAYTPCRK
Trigger: CTTTCTGCAGGGAGTGTAGGCTTTGCACATAGTGCAAAGGGTCTTAATCTGCATGGAGTGAGCCCTGCAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp TCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATaGCTTCCTGAGATGGACAATCAAAAAGCTGACCCT +
Preference number: 3 (lower is better)
Translates to: SLHTSLGDTEQE*LPEMDNQKADP
Trigger: AGGGTCAGCTTTTTGATTGTCCATCTCAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp CTCTGTATACTGCCACCCACTCACATCCTGGAAACGTaGCATTCATTAGTGGGCTACAGGAACCACAGGAGA +
Preference number: 3 (lower is better)
Translates to: LCILPPTHILET*HSLVGYRNHRR
Trigger: TCTCCTGTGGTTCCTGTAGCCCACTAATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 72 bp CGGAATATACACACACTCACACACTCACACAACTCCTaGACACACACTCAACACCAGCTCAGTGTAGTCACC +
Preference number: 3 (lower is better)
Translates to: RNIHTLTHSHNS*THTQHQLSVVT
Trigger: GGTGACTACACTGAGCTGGTGTTGAGTGTGTGTGCAGGAGTTGTGTGAGTGTGTGAGTGTGTGTATATTCCG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp GAATTGGGGAGTGGATTCCAGAAGCCTTGTGGGCCATaGCTAGGCTCTATCGCTTCATTTCTTTCCAAACAT +
Preference number: 3 (lower is better)
Translates to: ELGSGFQKPCGP*LGSIASFLSKH
Trigger: ATGTTTGGAAAGAAATGAAGCGATAGAGCCTAGCCATGGCCCACAAGGCTTCTGGAATCCACTCCCCAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CCA 72 bp GCTAAATGTGGTAATTCGATAAAAATATTCTTCCTCTaGACTGGTAGGCTCCTTTCCCCAGAACTGAAAGAG +
Preference number: 3 (lower is better)
Translates to: AKCGNSIKIFFL*TGRLLSPELKE
Trigger: CTCTTTCAGTTCTGGGGAAAGGAGCCTACCAGTCCAGAGGAAGAATATTTTTATCGAATTACCACATTTAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR GCA 72 bp TTTTGTTACACAAAGCTGTTAAATAAATACATTCTCTaGAGTCACTCAGGTTCACACCTACTCGCCACACAG +
Preference number: 3 (lower is better)
Translates to: FCYTKLLNKYIL*SHSGSHLLATQ
Trigger: CTGTGTGGCGAGTAGGTGTGAACCTGAGTGACTGCAGAGAATGTATTTATTTAACAGCTTTGTGTAACAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR TCA 90 bp CAACGCTCTCGGGTCAGGGGGCCAAGCTCAGGCCCAAGGCATAAGCAAAAGGGTTGGGTCGCCACCTCCTaGCCCAGAAGCCCGGCCCCG +
Preference number: 4 (lower is better)
Translates to: QRSRVRGPSSGPRHKQKGWVATS*PRSPAP
Trigger: CGGGGCCGGGCTTCTGGGTCAGGAGGTGGCGACCCA...ACCCTTTTGCTTATGCCTTGGGCCTGAGCTTGGCCCCCTGACCCGAGAGCGTTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp GAAGAGAGGGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTGGGGCAGCTCCCGCGGTGGGGAGATaGCACCTGCCTCTCCAGTGG +
Preference number: 4 (lower is better)
Translates to: EEREGKASQTGLTGPGAAPAVGR*HLPLQW
Trigger: CCACTGGAGAGGCAGGTGCCATCTCCCCACCGCGGG...AGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCCCTCTCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR TCA 90 bp GAAGAGAGGGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTGGGGCAGCTCAGTTCTTCTCCCGGTaGCACCTGCGGCCTGCCGTG +
Preference number: 4 (lower is better)
Translates to: EEREGKASQTGLTGPGAAQFFSR*HLRPAV
Trigger: CACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTG...AGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCCCTCTCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GAAGAGAGGGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTGGGGCAGCTCGGCACATGCGGCGCTaGTTGCGCTCCAGCTTCAGC +
Preference number: 4 (lower is better)
Translates to: EEREGKASQTGLTGPGAARHMRR*LRSSFS
Trigger: GCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTGCCG...AGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCCCTCTCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GAAGAGAGGGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTGGGGCAGCTTGGAAGGGTGCTAGCTaGCGCCAGCAGGTCCGCACG +
Preference number: 4 (lower is better)
Translates to: EEREGKASQTGLTGPGAAWKGAS*RQQVRT
Trigger: CGTGCGGACCTGCTGGCGGCAGCTAGCACCCTTCCA...AGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCCCTCTCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTAGCCCGGCCCCGCGGTaGGGAGATGGCACCTGCCTC +
Preference number: 4 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRSPAPR*GDGTCL
Trigger: GAGGCAGGTGCCATCTCCCCACCGCGGGGCCGGGCT...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGGCAGGCCTTGGCCAGTaGATGCGTCAGGCCGGCAGA +
Preference number: 4 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWAGLGQ*MRQAGR
Trigger: TCTGCCGGCCTGACGCATGCACTGGCCAAGGCCTGC...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp CAGGCTGCTGGGCCAGAAGGGCAGCCATGCGATTATGAAGGTGCACCTGCCCTCCTGCACTGCAGGCCTTaGCCAGTGCATGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: QAAGPEGQPCDYEGAPALLHCRP*PVHASG
Trigger: GCCTGACGCATGCACTGGCCAAGGCCTGCAGTGCAG...GAGGGCAGGTGCACCTTCATAATCGCATGGCTGCCCTTCTGGCCCAGCAGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGAGCCCGGCCCCGCGGTaGGGAGATGGCACCTGCCTC +
Preference number: 4 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLSPAPR*GDGTCL
Trigger: GAGGCAGGTGCCATCTCCCCACCGCGGGGCCGGGCT...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGCCGCAGCCGCCCCACTaGCAGGCCTCGCGGTTTTCC +
Preference number: 4 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLPQPPH*QASRFS
Trigger: GGAAAACCGCGAGGCCTGGCAGTGGGGCGGCTGCGG...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp GGCCGAGAGACAGCCAACTGGCTGTCTGTATACCAGGGCCCAAGTGTGCTAGGGTGCTTGCCCACCTCGTaGAAGGGTGCTAGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: GRETANWLSVYQGPSVLGCLPTS*KGASCR
Trigger: GCGGCAGCTAGCACCCTTCCACGAGGTGGGCAAGCA...CCCTAGCACACTTGGGCCCTGGTATACAGACAGCCAGTTGGCTGTCTCTCGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGTGCTTGCCCACCTCGTaGAAGGGTGCTAGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWCLPTS*KGASCR
Trigger: GCGGCAGCTAGCACCCTTCCACGAGGTGGGCAAGCA...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR TCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTCAGTTCTTCTCCCGGTaGCACCTGCGGCCTGCCGTG +
Preference number: 4 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRQFFSR*HLRPAV
Trigger: CACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTG...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTGCGCTCCATGCGGCCTaGACTGCAGGCCTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: APGPPNPPSISSNLISAPALHAA*TAGLGQ
Trigger: CTGGCCAAGGCCTGCAGTGCAGGCCGCATGGAGCGC...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGGCGCTCCATGCGGCCTaGACTGCAGGCCTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLALHAA*TAGLGQ
Trigger: CTGGCCAAGGCCTGCAGTGCAGGCCGCATGGAGCGC...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GGCCGAGAGACAGCCAACTGGCTGTCTGTATACCAGGGCCCAAGTGTGCTAGGGAGCAGGTCCGCACGGTaGAGGAGCCAGACACACCAT +
Preference number: 4 (lower is better)
Translates to: GRETANWLSVYQGPSVLGSRSAR*RSQTHH
Trigger: ATGGTGTGTCTGGCTCCTGCACCGTGCGGACCTGCT...CCCTAGCACACTTGGGCCCTGGTATACAGACAGCCAGTTGGCTGTCTCTCGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACCCCGCGGTGGGGAGATaGCACCTGCCTCTCCAGTGG +
Preference number: 4 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYPAVGR*HLPLQW
Trigger: CCACTGGAGAGGCAGGTGCCATCTCCCCACCGCGGG...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTACATGCGGCGCTGCTTaGGCTCCAGCTTCAGCCTGT +
Preference number: 4 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRTCGAA*APASAC
Trigger: ACAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGT...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGACTCCAGGGCACTCATaGTTACGGCCTCCACCAGTG +
Preference number: 4 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRTPGHS*LRPPPV
Trigger: CACTGGTGGAGGCCGTAAGCATGAGTGCCCTGGAGT...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTGCCTTGGCCAGTGCATaGGTCAGGCCGGCAGAAGAG +
Preference number: 4 (lower is better)
Translates to: APGPPNPPSISSNLISAPALASA*VRPAEE
Trigger: CTCTTCTGCCGGCCTGACGCATGCACTGGCCAAGGC...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp CCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGCATTCATGCAGGCCTTGGCCAGTaGATGCGTCAGGCCGGCAGA +
Preference number: 4 (lower is better)
Translates to: PPASVYCHPLTSWKRGIHAGLGQ*MRQAGR
Trigger: TCTGCCGGCCTGACGCATGCACTGGCCAAGGCCTGC...ATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACTGGAAGGGTGCTAGCTaGCGCCAGCAGGTCCGCACG +
Preference number: 4 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYWKGAS*RQQVRT
Trigger: CGTGCGGACCTGCTGGCGGCAGCTAGCACCCTTCCA...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTCTGCACTGCAGGCCTTaGCCAGTGCATGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: APGPPNPPSISSNLISAPLHCRP*PVHASG
Trigger: GCCTGACGCATGCACTGGCCAAGGCCTGCAGTGCAG...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTCCCACGAGGTTGTTGTaGAAGTCCACTCGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRPTRLL*KSTRAR
Trigger: GCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGG...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTCAGCACCAGCGGACCTaGCATTGGCAGGGCCTTGTC +
Preference number: 4 (lower is better)
Translates to: APGPPNPPSISSNLISAPQHQRT*HWQGLV
Trigger: GACAAGGCCCTGCCAATGCCAGGTCCGCTGGTGCTG...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR TCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGGGCCCAGGAACTCCTTaGCAAACTTGCTGCTGTACT +
Preference number: 4 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWGPGTP*QTCCCT
Trigger: AGTACAGCAGCAAGTTTGTCAAGGAGTTCCTGGGCC...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp CCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGCATTCATCCATGCGGCCTGCACTaGAGGCCTTGGCCAGTGCAT +
Preference number: 4 (lower is better)
Translates to: PPASVYCHPLTSWKRGIHPCGLH*RPWPVH
Trigger: ATGCACTGGCCAAGGCCTGCAGTGCAGGCCGCATGG...ATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTAGCAGGTCCGCACGGTaGAGGAGCCAGACACACCAT +
Preference number: 4 (lower is better)
Translates to: APGPPNPPSISSNLISAPSRSAR*RSQTHH
Trigger: ATGGTGTGTCTGGCTCCTGCACCGTGCGGACCTGCT...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CAA 72 bp GACCACCAAGGGTCTCTGACCCTGGGGAAGGTAGAATaGGGGAGTGGATTCCAGAAGCCTTGTGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: DHQGSLTLGKVE*GSGFQKPCGPW
Trigger: CCATGGCCCACAAGGCTTCTGGAATCCACTCCCCAATTCTACCTTCCCCAGGGTCAGAGACCCTTGGTGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR TCA 90 bp CCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGCATTCATACTTGCTGCTGTACTTaGGGTTGTCCCCGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: PPASVYCHPLTSWKRGIHTCCCT*GCPRSR
Trigger: GCGGCTGCGGGGACAACCTCAAGTACAGCAGCAAGT...ATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp TTCTTCCTCTGGACTGGTAGGCTCCTTTCCCCAGAACTGAAAGAGATGAAGCTCCGGCACATGCGGCGCTaGTTGCGCTCCAGCTTCAGC +
Preference number: 4 (lower is better)
Translates to: FFLWTGRLLSPELKEMKLRHMRR*LRSSFS
Trigger: GCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTGCCG...GAGCTTCATCTCTTTCAGTTCTGGGGAAAGGAGCCTACCAGTCCAGAGGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp TGGTCCCTGACAAGGGCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGGCCTTGGCCAGTGCATaGGTCAGGCCGGCAGAAGAG +
Preference number: 4 (lower is better)
Translates to: WSLTRAILMCQGQRQLRKALASA*VRPAEE
Trigger: CTCTTCTGCCGGCCTGACGCATGCACTGGCCAAGGC...CTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCCCTTGTCAGGGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGGTTTTCCAGGTCGGGTaGCTCATCACACGTGCAGCG +
Preference number: 4 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLVFQVG*LITRAA
Trigger: CGCTGCACGTGTGATGAGGCACCCGACCTGGAAAAC...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGCACTCCAGCCCAGCTTaGCTTCACACCCACGAGGTT +
Preference number: 4 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLHSSPA*LHTHEV
Trigger: AACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTG...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS-3UTR CCA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTAAGCGGAACTGGTACTaGCACTCCAGGGCACTCATG +
Preference number: 4 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRKRNWY*HSRALM
Trigger: CATGAGTGCCCTGGAGTGCCAGTACCAGTTCCGCTT...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCATGGCATTTGCAAGTaGTTTCCACTCCAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRHGICK*FPLQPS
Trigger: GCTGGGCTGGAGTGGAAACCACTTGCAAATGCCATG...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS-3UTR CCA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGGAGCCAGACACACCATaGCATTTGCAAGTGGTTTCC +
Preference number: 4 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWEPDTP*HLQVVS
Trigger: GGAAACCACTTGCAAATGCCATGGTGTGTCTGGCTC...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGCAGCCAGGCAGAAGCTaGGAGAGTCGTCCAGGTGTA +
Preference number: 4 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLQPGRS*ESRPGV
Trigger: TACACCTGGACGACTCTCCCAGCTTCTGCCTGGCTG...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp TGGTCCCTGACAAGGGCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGCAGCACCAGCGGACCTaGCATTGGCAGGGCCTTGTC +
Preference number: 4 (lower is better)
Translates to: WSLTRAILMCQGQRQLRKQHQRT*HWQGLV
Trigger: GACAAGGCCCTGCCAATGCCAGGTCCGCTGGTGCTG...CTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCCCTTGTCAGGGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR TCA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCAACTTGCTGCTGTACTTaGGGTTGTCCCCGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAATCCCT*GCPRSR
Trigger: GCGGCTGCGGGGACAACCTCAAGTACAGCAGCAAGT...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GGCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGCATTACTGCAACGCCCATGCGGCCTGCACTaGAGGCCTTGGCCAGTGCAT +
Preference number: 4 (lower is better)
Translates to: GYTDVSGTEATEKALLQRPCGLH*RPWPVH
Trigger: ATGCACTGGCCAAGGCCTGCAGTGCAGGCCGCATGG...GCGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp TCCTGCAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCGCTTGCGGTTTTCCAGGTCGGGTaGCTCATCACACGTGCAGCG +
Preference number: 4 (lower is better)
Translates to: SCRCRILLVLCAKSTPLAVFQVG*LITRAA
Trigger: CGCTGCACGTGTGATGAGGCACCCGACCTGGAAAAC...CGCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTTGGGGAGATGGCACCTaGCTCTCCAGTGGCTTCATT +
Preference number: 4 (lower is better)
Translates to: APGPPNPPSISSNLISAPWGDGT*LSSGFI
Trigger: AATGAAGCCACTGGAGAGGCAGGTGCCATCTCCCCA...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GGCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGCATTACTGCAACGCACATGCGGCGCTGCTTaGGCTCCAGCTTCAGCCTGT +
Preference number: 4 (lower is better)
Translates to: GYTDVSGTEATEKALLQRTCGAA*APASAC
Trigger: ACAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGT...GCGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCAAAGCGGAACTGGTACTaGCACTCCAGGGCACTCATG +
Preference number: 4 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAAKRNWY*HSRALM
Trigger: CATGAGTGCCCTGGAGTGCCAGTACCAGTTCCGCTT...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CAA 72 bp CTAGGGGCACCTCTTCATCCTTGTAGACCTTCTGTGTaGTTTGTAACCCTGTGCCCCACACAGCAGGATAGG +
Preference number: 4 (lower is better)
Translates to: LGAPLHPCRPSV*FVTLCPTQQDR
Trigger: CCTATCCTGCTGTGTGGGGCACAGGGTTACAAACAACACAGAAGGTCTACAAGGATGAAGAGGTGCCCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTACACACCATGGCATTTaGAAGTGGTTTCCACTCCAG +
Preference number: 4 (lower is better)
Translates to: APGPPNPPSISSNLISAPTHHGI*KWFPLQ
Trigger: CTGGAGTGGAAACCACTTGCAAATGCCATGGTGTGT...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp GGCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGCATTACTGCAACGCTGGGGAGATGGCACCTaGCTCTCCAGTGGCTTCATT +
Preference number: 4 (lower is better)
Translates to: GYTDVSGTEATEKALLQRWGDGT*LSSGFI
Trigger: AATGAAGCCACTGGAGAGGCAGGTGCCATCTCCCCA...GCGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CCA 90 bp TCCTGCAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCGCTTGCGGAGCCAGACACACCATaGCATTTGCAAGTGGTTTCC +
Preference number: 4 (lower is better)
Translates to: SCRCRILLVLCAKSTPLAEPDTP*HLQVVS
Trigger: GGAAACCACTTGCAAATGCCATGGTGTGTCTGGCTC...CGCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR TCA 90 bp GGCTATACTGATGTGTCAGGGACAGAGGCAACTGAGAAAGCATTACTGCAACGCGGCCCAGGAACTCCTTaGCAAACTTGCTGCTGTACT +
Preference number: 4 (lower is better)
Translates to: GYTDVSGTEATEKALLQRGPGTP*QTCCCT
Trigger: AGTACAGCAGCAAGTTTGTCAAGGAGTTCCTGGGCC...GCGTTGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR GCA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCAACACACCATGGCATTTaGAAGTGGTTTCCACTCCAG +
Preference number: 4 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAATHHGI*KWFPLQ
Trigger: CTGGAGTGGAAACCACTTGCAAATGCCATGGTGTGT...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
3UTR CAA 72 bp ATAGAAGAAGATCAAAGAGGCTCTGGCCTGCGGGAGTaGCTTCATCCAGAAAGACATTCTAGTATATATTTA +
Preference number: 4 (lower is better)
Translates to: IEEDQRGSGLRE*LHPERHSSIYL
Trigger: TAAATATATACTAGAATGTCTTTCTGGATGAAGCAACTCCCGCAGGCCAGAGCCTCTTTGATCTTCTTCTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 90 bp CGGCCTCCACCAGTGTCTCGGCCACACCCGGGTCCCTGCGGCACATaGGGCGCTGCTTGCGCTCCAGCTTCAGCCTGTCGCAGGCCTTGT +
Preference number: 5 (lower is better)
Translates to: RPPPVSRPHPGPCGT*GAACAPASACRRPC
Trigger: ACAAGGCCTGCGACAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTGCCGCAGGGACCCGGGTGTGGCCGAGACACTGGTGGAGGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 90 bp GTGTCTCGGCCACACCCGGGTCCCTGCGGCACATGCGGCGCTGCTTaGGCTCCAGCTTCAGCCTGTCGCAGGCCTTGTAGTGTGCTTGGG +
Preference number: 5 (lower is better)
Translates to: VSRPHPGPCGTCGAA*APASACRRPCSVLG
Trigger: CCCAAGCACACTACAAGGCCTGCGACAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTGCCGCAGGGACCCGGGTGTGGCCGAGACAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 90 bp TCATGCTTACGGCCTCCACCAGTGTCTCGGCCACACCCGGGTCCCTaGGGCACATGCGGCGCTGCTTGCGCTCCAGCTTCAGCCTGTCGC +
Preference number: 5 (lower is better)
Translates to: SCLRPPPVSRPHPGP*GTCGAACAPASACR
Trigger: GCGACAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTGCCGCAGGGACCCGGGTGTGGCCGAGACACTGGTGGAGGCCGTAAGCATGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp GAAGAGAGGGAAGGCAAGGCCTCCCAGACTGGCTTGACTGGGCCTGGGGCAGCTCCAGCGGACCTGGCATaGGCAGGGCCTTGTCACCAC +
Preference number: 5 (lower is better)
Translates to: EEREGKASQTGLTGPGAAPADLA*AGPCHH
Trigger: GTGGTGACAAGGCCCTGCCAATGCCAGGTCCGCTGG...AGCTGCCCCAGGCCCAGTCAAGCCAGTCTGGGAGGCCTTGCCTTCCCTCTCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS TCA 90 bp TTGTGGCCTCGGCCACAACAAATACTCTCACAGTTCTTCTCCCGGTaGCACCTGCGGCCTGCCGTGCCAGGGGAAAAGCGGCCAGCCAGG +
Preference number: 5 (lower is better)
Translates to: LWPRPQQILSQFFSR*HLRPAVPGEKRPAR
Trigger: CCTGGCTGGCCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGTATTTGTTGTGGCCGAGGCCACAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 90 bp CTCGGCCACAACAAATACTCTCACAGTTCTTCTCCCGGTGACACCTaGGGCCTGCCGTGCCAGGGGAAAAGCGGCCAGCCAGGCAGAAGC +
Preference number: 5 (lower is better)
Translates to: LGHNKYSHSSSPGDT*GLPCQGKSGQPGRS
Trigger: GCTTCTGCCTGGCTGGCCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGTATTTGTTGTGGCCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 90 bp AAATACTCTCACAGTTCTTCTCCCGGTGACACCTGCGGCCTGCCGTaGCAGGGGAAAAGCGGCCAGCCAGGCAGAAGCTGGGAGAGTCGT +
Preference number: 5 (lower is better)
Translates to: KYSHSSSPGDTCGLP*QGKSGQPGRSWESR
Trigger: ACGACTCTCCCAGCTTCTGCCTGGCTGGCCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGTATTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CCA 90 bp GTTTCCACTCCAGCCCAGCTTGCCTTCACACCCACGAGGTTGTTGTaGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAGCGCCGGCCC +
Preference number: 5 (lower is better)
Translates to: VSTPAQLAFTPTRLL*KSTRARKSLLERRP
Trigger: GGGCCGGCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGGAAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS-3UTR CAA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTCCTGCACTGCAGGCCTaGGCCAGTGCATGCGTCAGG +
Preference number: 5 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRPALQA*ASACVR
Trigger: CCTGACGCATGCACTGGCCAAGGCCTGCAGTGCAGG...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGCCACTCCAGCCCAGCTaGCCTTCACACCCACGAGGT +
Preference number: 5 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRPLQPS*PSHPRG
Trigger: ACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGG...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS GCA 90 bp ACAACAAATACTCTCACAGTTCTTCTCCCGGTGACACCTGCGGCCTaGCGTGCCAGGGGAAAAGCGGCCAGCCAGGCAGAAGCTGGGAGA +
Preference number: 5 (lower is better)
Translates to: TTNTLTVLLPVTPAA*RARGKAASQAEAGR
Trigger: TCTCCCAGCTTCTGCCTGGCTGGCCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGTATTTGTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CCA 90 bp TTGAGCGAGGTCTCATATTTGTGTTTTAGGTGCTTGCCCACCTCGTaGAAGGGTGCTAGCTGCCGCCAGCAGGTCCGCACGGTGCAGGAG +
Preference number: 5 (lower is better)
Translates to: LSEVSYLCFRCLPTS*KGASCRQQVRTVQE
Trigger: CTCCTGCACCGTGCGGACCTGCTGGCGGCAGCTAGCACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp TCCTGCAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCGCTTGCGCACATGCGGCGCTGCTaGCGCTCCAGCTTCAGCCTG +
Preference number: 5 (lower is better)
Translates to: SCRCRILLVLCAKSTPLAHMRRC*RSSFSL
Trigger: CAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTG...CGCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp TCCTGCAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCGCTTGCGCCTGCACTGCAGGCCTaGGCCAGTGCATGCGTCAGG +
Preference number: 5 (lower is better)
Translates to: SCRCRILLVLCAKSTPLAPALQA*ASACVR
Trigger: CCTGACGCATGCACTGGCCAAGGCCTGCAGTGCAGG...CGCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp AGGCTGCACAAGACTCCACACAAAGACAGCTCCCTTGTGAGTCCACTGCTGTACCCAGCGGACCTGGCATaGGCAGGGCCTTGTCACCAC +
Preference number: 5 (lower is better)
Translates to: RLHKTPHKDSSLVSPLLYPADLA*AGPCHH
Trigger: GTGGTGACAAGGCCCTGCCAATGCCAGGTCCGCTGG...GTACAGCAGTGGACTCACAAGGGAGCTGTCTTTGTGTGGAGTCTTGTGCAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 90 bp GTAGTGCTGCCCACCTTGAGCGAGGTCTCATATTTGTGTTTTAGGTaGTTGCCCACCTCGTGGAAGGGTGCTAGCTGCCGCCAGCAGGTC +
Preference number: 5 (lower is better)
Translates to: VVLPTLSEVSYLCFR*LPTSWKGASCRQQV
Trigger: GACCTGCTGGCGGCAGCTAGCACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCACTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CCA 90 bp GTTTCCACTCCAGCCTTTATCACCTTCACACCCACGAGGTTGTTGTaGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAGCGCCGGCCC +
Preference number: 5 (lower is better)
Translates to: VSTPAFITFTPTRLL*KSTRARKSLLERRP
Trigger: GGGCCGGCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGTGATAAAGGCTGGAGTGGAAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTACACCCACGAGGTTGTaGTGGAAGTCCACTCGGGCT +
Preference number: 5 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRTPTRL*WKSTRA
Trigger: AGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGT...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CCATACCGCAGAGGGAACACAGGCCAACTGGATGCTGACCATGCCAGCTCGGAATTCACACCCACGAGGTaGTTGTGGAAGTCCACTCGG +
Preference number: 5 (lower is better)
Translates to: PYRRGNTGQLDADHASSEFTPTR*LWKSTR
Trigger: CCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAA...TTCCGAGCTGGCATGGTCAGCATCCAGTTGGCCTGTGTTCCCTCTGCGGTATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTGGCATTGGCAGGGCCTaGTCACCACACGACTCTGTG +
Preference number: 5 (lower is better)
Translates to: APGPPNPPSISSNLISAPGIGRA*SPHDSV
Trigger: CACAGAGTCGTGTGGTGACAAGGCCCTGCCAATGCC...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 90 bp AGACACACCATGGCATTTGCAAGTGGTTTCCACTCCAGCCCAGCTTaGCTTCACACCCACGAGGTTGTTGTGGAAGTCCACTCGGGCTCG +
Preference number: 5 (lower is better)
Translates to: RHTMAFASGFHSSPA*LHTHEVVVEVHSGS
Trigger: CGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGGAAACCACTTGCAAATGCCATGGTGTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS-3UTR CAA 90 bp TTCTTCCTCTGGACTGGTAGGCTCCTTTCCCCAGAACTGAAAGAGATGAAGCTCCACATGCGGCGCTGCTaGCGCTCCAGCTTCAGCCTG +
Preference number: 5 (lower is better)
Translates to: FFLWTGRLLSPELKEMKLHMRRC*RSSFSL
Trigger: CAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTG...GAGCTTCATCTCTTTCAGTTCTGGGGAAAGGAGCCTACCAGTCCAGAGGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp GCTCCAGGACCCCCAAATCCCCCATCTATATCCAGCAACCTGATCTCTGCACCTAACTTGCTGCTGTACTaGAGGTTGTCCCCGCAGCCG +
Preference number: 5 (lower is better)
Translates to: APGPPNPPSISSNLISAPNLLLY*RLSPQP
Trigger: CGGCTGCGGGGACAACCTCAAGTACAGCAGCAAGTT...AGGTGCAGAGATCAGGTTGCTGGATATAGATGGGGGATTTGGGGGTCCTGGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTCGGCCCAGGAACTCCTaGACAAACTTGCTGCTGTAC +
Preference number: 5 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRRPRNS*TNLLLY
Trigger: GTACAGCAGCAAGTTTGTCAAGGAGTTCCTGGGCCG...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CAGGCTGCTGGGCCAGAAGGGCAGCCATGCGATTATGAAGGTGCACCTGCCCTCAGCGAGGTCTCATATTaGTGTTTTAGGTGCTTGCCC +
Preference number: 5 (lower is better)
Translates to: QAAGPEGQPCDYEGAPALSEVSY*CFRCLP
Trigger: GGGCAAGCACCTAAAACACAAATATGAGACCTCGCT...GAGGGCAGGTGCACCTTCATAATCGCATGGCTGCCCTTCTGGCCCAGCAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp TCCTGCAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCGCTTGCGACACCCACGAGGTTGTaGTGGAAGTCCACTCGGGCT +
Preference number: 5 (lower is better)
Translates to: SCRCRILLVLCAKSTPLATPTRL*WKSTRA
Trigger: AGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGT...CGCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGTAGTGCTGCCCACCTaGAGCGAGGTCTCATATTTG +
Preference number: 5 (lower is better)
Translates to: HSCPPASVYCHPLTSWKRVVLPT*SEVSYL
Trigger: CAAATATGAGACCTCGCTCAAGGTGGGCAGCACTAC...ACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CTCAGGTTCACACCTACTCGCCACACAGTTGAGGTAGAGAAATCACAGGCTGCAGGCATTGGCAGGGCCTaGTCACCACACGACTCTGTG +
Preference number: 5 (lower is better)
Translates to: LRFTPTRHTVEVEKSQAAGIGRA*SPHDSV
Trigger: CACAGAGTCGTGTGGTGACAAGGCCCTGCCAATGCC...TGCAGCCTGTGATTTCTCTACCTCAACTGTGTGGCGAGTAGGTGTGAACCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp GGGGTACACTCCTGCCCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAACTCCTTGACAAACTaGCTGCTGTACTTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: GVHSCPPASVYCHPLTSWNSLTN*LLYLRL
Trigger: CAACCTCAAGTACAGCAGCAAGTTTGTCAAGGAGTT...CCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGGGCAGGAGTGTACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp TCCTGCAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCGCTTGCGCGGCCCAGGAACTCCTaGACAAACTTGCTGCTGTAC +
Preference number: 5 (lower is better)
Translates to: SCRCRILLVLCAKSTPLARPRNS*TNLLLY
Trigger: GTACAGCAGCAAGTTTGTCAAGGAGTTCCTGGGCCG...CGCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp TGTGTCTGTCCCTCCATACCTCCCTTGGGGACACAGAGCAAGAATGGCTTCCTGTTGTGTTTTAGGTGCTaGCCCACCTCGTGGAAGGGT +
Preference number: 5 (lower is better)
Translates to: CVCPSIPPLGTQSKNGFLLCFRC*PTSWKG
Trigger: ACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAA...CAGGAAGCCATTCTTGCTCTGTGTCCCCAAGGGAGGTATGGAGGGACAGACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp GGCGGGAGCAGGGCAGCTGCTCACTCTGCTGCCCATAGAAGAAGATCAAAGAGGAGCGAGGTCTCATATTaGTGTTTTAGGTGCTTGCCC +
Preference number: 5 (lower is better)
Translates to: GGSRAAAHSAAHRRRSKRSEVSY*CFRCLP
Trigger: GGGCAAGCACCTAAAACACAAATATGAGACCTCGCT...CCTCTTTGATCTTCTTCTATGGGCAGCAGAGTGAGCAGCTGCCCTGCTCCCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGCATTCATTTGTGTTTTAGGTGCTaGCCCACCTCGTGGAAGGGT +
Preference number: 5 (lower is better)
Translates to: PPASVYCHPLTSWKRGIHLCFRC*PTSWKG
Trigger: ACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAA...ATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp TCCTGCAGGTGTAGAATTCTTCTGGTGCTGTGTGCAAAGTCCACACCGCTTGCGGTAGTGCTGCCCACCTaGAGCGAGGTCTCATATTTG +
Preference number: 5 (lower is better)
Translates to: SCRCRILLVLCAKSTPLAVVLPT*SEVSYL
Trigger: CAAATATGAGACCTCGCTCAAGGTGGGCAGCACTAC...CGCAAGCGGTGTGGACTTTGCACACAGCACCAGAAGAATTCTACACCTGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp TTCTTCCTCTGGACTGGTAGGCTCCTTTCCCCAGAACTGAAAGAGATGAAGCTCTTCACACCCACGAGGTaGTTGTGGAAGTCCACTCGG +
Preference number: 5 (lower is better)
Translates to: FFLWTGRLLSPELKEMKLFTPTR*LWKSTR
Trigger: CCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAA...GAGCTTCATCTCTTTCAGTTCTGGGGAAAGGAGCCTACCAGTCCAGAGGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS-3UTR CAA 90 bp CCACCAGCCTCTGTATACTGCCACCCACTCACATCCTGGAAACGTGGCATTCATAACTCCTTGACAAACTaGCTGCTGTACTTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: PPASVYCHPLTSWKRGIHNSLTN*LLYLRL
Trigger: CAACCTCAAGTACAGCAGCAAGTTTGTCAAGGAGTT...ATGAATGCCACGTTTCCAGGATGTGAGTGGGTGGCAGTATACAGAGGCTGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 72 bp TCGGCCACACCCGGGTCCCTGCGGCACATGCGGCGCTaGTTGCGCTCCAGCTTCAGCCTGTCGCAGGCCTTG +
Preference number: 6 (lower is better)
Translates to: SATPGSLRHMRR*LRSSFSLSQAL
Trigger: CAAGGCCTGCGACAGGCTGAAGCTGGAGCGCAAGCAGCGCCGCATGTGCCGCAGGGACCCGGGTGTGGCCGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 72 bp CCCAGAAGCCCGGCCCCGCGGTGGGGAGATGGCACCTaGCTCTCCAGTGGCTTCATTGGTAGTGCTGCCCAC +
Preference number: 6 (lower is better)
Translates to: PRSPAPRWGDGT*LSSGFIGSAAH
Trigger: GTGGGCAGCACTACCAATGAAGCCACTGGAGAGGCAGGTGCCATCTCCCCACCGCGGGGCCGGGCTTCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 72 bp GCGCTCCAGCTTCAGCCTGTCGCAGGCCTTGTAGTGTaGTTGGGCCGCAGCCTCGGTCTCCAGGGTCAGAGG +
Preference number: 6 (lower is better)
Translates to: ALQLQPVAGLVV*LGRSLGLQGQR
Trigger: CCTCTGACCCTGGAGACCGAGGCTGCGGCCCAAGCACACTACAAGGCCTGCGACAGGCTGAAGCTGGAGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 72 bp CACAGTTCTTCTCCCGGTGACACCTGCGGCCTGCCGTaGCAGGGGAAAAGCGGCCAGCCAGGCAGAAGCTGG +
Preference number: 6 (lower is better)
Translates to: HSSSPGDTCGLP*QGKSGQPGRSW
Trigger: CCAGCTTCTGCCTGGCTGGCCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 72 bp ACTCTCACAGTTCTTCTCCCGGTGACACCTGCGGCCTaGCGTGCCAGGGGAAAAGCGGCCAGCCAGGCAGAA +
Preference number: 6 (lower is better)
Translates to: TLTVLLPVTPAA*RARGKAASQAE
Trigger: TTCTGCCTGGCTGGCCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CCA 72 bp CCGTGCCAGGGGAAAAGCGGCCAGCCAGGCAGAAGCTaGGAGAGTCGTCCAGGTGTACAAGCTCTGGTGTTC +
Preference number: 6 (lower is better)
Translates to: PCQGKSGQPGRS*ESRPGVQALVF
Trigger: GAACACCAGAGCTTGTACACCTGGACGACTCTCCCAGCTTCTGCCTGGCTGGCCGCTTTTCCCCTGGCACGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS TCA 72 bp CGGCCACAACAAATACTCTCACAGTTCTTCTCCCGGTaGCACCTGCGGCCTGCCGTGCCAGGGGAAAAGCGG +
Preference number: 6 (lower is better)
Translates to: RPQQILSQFFSR*HLRPAVPGEKR
Trigger: CCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGTATTTGTTGTGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 90 bp GTGGTTTCCACTCCAGCCCAGCTTGCCTTCACACCCACGAGGTTGTaGTGGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAGCGCCGG +
Preference number: 6 (lower is better)
Translates to: VVSTPAQLAFTPTRL*WKSTRARKSLLERR
Trigger: CCGGCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGGAAACCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS CAA 90 bp GTGCTGCCCACCTTGAGCGAGGTCTCATATTTGTGTTTTAGGTGCTaGCCCACCTCGTGGAAGGGTGCTAGCTGCCGCCAGCAGGTCCGC +
Preference number: 6 (lower is better)
Translates to: VLPTLSEVSYLCFRC*PTSWKGASCRQQVR
Trigger: GCGGACCTGCTGGCGGCAGCTAGCACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS GCA 72 bp AACAAATACTCTCACAGTTCTTCTCCCGGTGACACCTaGGGCCTGCCGTGCCAGGGGAAAAGCGGCCAGCCA +
Preference number: 6 (lower is better)
Translates to: NKYSHSSSPGDT*GLPCQGKSGQP
Trigger: TGGCTGGCCGCTTTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGTATTTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 90 bp CGGCCCCGCGGTGGGGAGATGGCACCTGCCTCTCCAGTGGCTTCATaGGTAGTGCTGCCCACCTTGAGCGAGGTCTCATATTTGTGTTTT +
Preference number: 6 (lower is better)
Translates to: RPRGGEMAPASPVAS*VVLPTLSEVSYLCF
Trigger: AAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCACTACCAATGAAGCCACTGGAGAGGCAGGTGCCATCTCCCCACCGCGGGGCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 90 bp ACACCCACGAGGTTGTTGTGGAAGTCCACTCGGGCTCGCAAATCCTaGCTAGAGCGCCGGCCCAGGAACTCCTTGACAAACTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: TPTRLLWKSTRARKS*LERRPRNSLTNLLL
Trigger: CAGCAGCAAGTTTGTCAAGGAGTTCCTGGGCCGGCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 90 bp CAAGTGGTTTCCACTCCAGCCCAGCTTGCCTTCACACCCACGAGGTaGTTGTGGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAGCGC +
Preference number: 6 (lower is better)
Translates to: QVVSTPAQLAFTPTR*LWKSTRARKSLLER
Trigger: GCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGGAAACCACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS CAA 90 bp CGGACCTGGCATTGGCAGGGCCTTGTCACCACACGACTCTGTGTGTaGTGGCCTCGGCCACAACAAATACTCTCACAGTTCTTCTCCCGG +
Preference number: 6 (lower is better)
Translates to: RTWHWQGLVTTRLCV*WPRPQQILSQFFSR
Trigger: CCGGGAGAAGAACTGTGAGAGTATTTGTTGTGGCCGAGGCCACAACACACAGAGTCGTGTGGTGACAAGGCCCTGCCAATGCCAGGTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CCA 72 bp CCAGCCCAGCTTGCCTTCACACCCACGAGGTTGTTGTaGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAG +
Preference number: 6 (lower is better)
Translates to: PAQLAFTPTRLL*KSTRARKSLLE
Trigger: CTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS CCA 72 bp GTCTCATATTTGTGTTTTAGGTGCTTGCCCACCTCGTaGAAGGGTGCTAGCTGCCGCCAGCAGGTCCGCACG +
Preference number: 6 (lower is better)
Translates to: VSYLCFRCLPTS*KGASCRQQVRT
Trigger: CGTGCGGACCTGCTGGCGGCAGCTAGCACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 72 bp TCCACTCCAGCCCAGCTTGCCTTCACACCCACGAGGTaGTTGTGGAAGTCCACTCGGGCTCGCAAATCCTTG +
Preference number: 6 (lower is better)
Translates to: STPAQLAFTPTR*LWKSTRARKSL
Trigger: CAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS CAA 90 bp CAGACACACCATGGCATTTGCAAGTGGTTTCCACTCCAGCCCAGCTaGCCTTCACACCCACGAGGTTGTTGTGGAAGTCCACTCGGGCTC +
Preference number: 6 (lower is better)
Translates to: QTHHGICKWFPLQPS*PSHPRGCCGSPLGL
Trigger: GAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGGAAACCACTTGCAAATGCCATGGTGTGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS CAA 90 bp GTGGTTTCCACTCCAGCCTTTATCACCTTCACACCCACGAGGTTGTaGTGGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAGCGCCGG +
Preference number: 6 (lower is better)
Translates to: VVSTPAFITFTPTRL*WKSTRARKSLLERR
Trigger: CCGGCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGTGATAAAGGCTGGAGTGGAAACCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108783.4
CDS GCA 72 bp CCCACCTTGAGCGAGGTCTCATATTTGTGTTTTAGGTaGTTGCCCACCTCGTGGAAGGGTGCTAGCTGCCGC +
Preference number: 6 (lower is better)
Translates to: PTLSEVSYLCFR*LPTSWKGASCR
Trigger: GCGGCAGCTAGCACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 72 bp AGGTTGTTGTGGAAGTCCACTCGGGCTCGCAAATCCTaGCTAGAGCGCCGGCCCAGGAACTCCTTGACAAAC +
Preference number: 6 (lower is better)
Translates to: RLLWKSTRARKS*LERRPRNSLTN
Trigger: GTTTGTCAAGGAGTTCCTGGGCCGGCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 72 bp ACTCCAGCCCAGCTTGCCTTCACACCCACGAGGTTGTaGTGGAAGTCCACTCGGGCTCGCAAATCCTTGCTA +
Preference number: 6 (lower is better)
Translates to: TPAQLAFTPTRL*WKSTRARKSLL
Trigger: TAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS CAA 90 bp GTGGCTTCATTGGTAGTGCTGCCCACCTTGAGCGAGGTCTCATATTaGTGTTTTAGGTGCTTGCCCACCTCGTGGAAGGGTGCTAGCTGC +
Preference number: 6 (lower is better)
Translates to: VASLVVLPTLSEVSY*CFRCLPTSWKGASC
Trigger: GCAGCTAGCACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCACTACCAATGAAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 90 bp ATGGCACCTGCCTCTCCAGTGGCTTCATTGGTAGTGCTGCCCACCTaGAGCGAGGTCTCATATTTGTGTTTTAGGTGCTTGCCCACCTCG +
Preference number: 6 (lower is better)
Translates to: MAPASPVASLVVLPT*SEVSYLCFRCLPTS
Trigger: CGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCACTACCAATGAAGCCACTGGAGAGGCAGGTGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 90 bp CAAGTGGTTTCCACTCCAGCCTTTATCACCTTCACACCCACGAGGTaGTTGTGGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAGCGC +
Preference number: 6 (lower is better)
Translates to: QVVSTPAFITFTPTR*LWKSTRARKSLLER
Trigger: GCGCTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGTGATAAAGGCTGGAGTGGAAACCACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108783.4
CDS CCA 72 bp CCAGCCTTTATCACCTTCACACCCACGAGGTTGTTGTaGAAGTCCACTCGGGCTCGCAAATCCTTGCTAGAG +
Preference number: 6 (lower is better)
Translates to: PAFITFTPTRLL*KSTRARKSLLE
Trigger: CTCTAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGTGATAAAGGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108783.4
CDS CAA 72 bp CATGGCATTTGCAAGTGGTTTCCACTCCAGCCCAGCTaGCCTTCACACCCACGAGGTTGTTGTGGAAGTCCA +
Preference number: 6 (lower is better)
Translates to: HGICKWFPLQPS*PSHPRGCCGSP
Trigger: TGGACTTCCACAACAACCTCGTGGGTGTGAAGGCAAGCTGGGCTGGAGTGGAAACCACTTGCAAATGCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000128.10
CDS CAA 72 bp CATTGGCAGGGCCTTGTCACCACACGACTCTGTGTGTaGTGGCCTCGGCCACAACAAATACTCTCACAGTTC +
Preference number: 6 (lower is better)
Translates to: HWQGLVTTRLCV*WPRPQQILSQF
Trigger: GAACTGTGAGAGTATTTGTTGTGGCCGAGGCCACAACACACAGAGTCGTGTGGTGACAAGGCCCTGCCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 72 bp TCCACTCCAGCCTTTATCACCTTCACACCCACGAGGTaGTTGTGGAAGTCCACTCGGGCTCGCAAATCCTTG +
Preference number: 6 (lower is better)
Translates to: STPAFITFTPTR*LWKSTRARKSL
Trigger: CAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGTGATAAAGGCTGGAGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108783.4
CDS CAA 72 bp TTGGTAGTGCTGCCCACCTTGAGCGAGGTCTCATATTaGTGTTTTAGGTGCTTGCCCACCTCGTGGAAGGGT +
Preference number: 6 (lower is better)
Translates to: LVVLPTLSEVSY*CFRCLPTSWKG
Trigger: ACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCACTACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4
CDS CAA 72 bp ACTCCAGCCTTTATCACCTTCACACCCACGAGGTTGTaGTGGAAGTCCACTCGGGCTCGCAAATCCTTGCTA +
Preference number: 6 (lower is better)
Translates to: TPAFITFTPTRL*WKSTRARKSLL
Trigger: TAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGTGATAAAGGCTGGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108783.4
CDS CAA 72 bp GCCTCTCCAGTGGCTTCATTGGTAGTGCTGCCCACCTaGAGCGAGGTCTCATATTTGTGTTTTAGGTGCTTG +
Preference number: 6 (lower is better)
Translates to: ASPVASLVVLPT*SEVSYLCFRCL
Trigger: CAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCACTACCAATGAAGCCACTGGAGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000128.10
ENSMUST00000108783.4