RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WNT8B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036961

Ensembl transcript IDs: ENSMUST00000041163.5

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTAGAGACTGCAGCCTCCTCCTGTCAGAATCTCTGGGCTAGGGAGTaGGAGGTCCCCCATTCTGGGTTCCTCTATTTCCGGGGGTCTCTA +
Preference number: 1 (lower is better)
Translates to: VETAASSCQNLWARE*EVPHSGFLYFRGSL
Trigger: TAGAGACCCCCGGAAATAGAGGAACCCAGAATGGGGGACCTCGCACTCCCTAGCCCAGAGATTCTGACAGGAGGAGGCTGCAGTCTCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 90 bp AAGTGTCACTCGGTAGAGACTGCAGCCTCCTCCTGTCAGAATCTCTaGGCTAGGGAGTGCGAGGTCCCCCATTCTGGGTTCCTCTATTTC +
Preference number: 1 (lower is better)
Translates to: KCHSVETAASSCQNL*ARECEVPHSGFLYF
Trigger: GAAATAGAGGAACCCAGAATGGGGGACCTCGCACTCCCTAGCCCAGAGATTCTGACAGGAGGAGGCTGCAGTCTCTACCGAGTGACACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 90 bp CAGAAGCACGATGCTTCCACGGTTCTGCTGAGAGCCCTGGAAAAATaGAGCTTCACGTTCCAATGTGGAACCCTTAGAGTTTTCAGTTGC +
Preference number: 1 (lower is better)
Translates to: QKHDASTVLLRALEK*SFTFQCGTLRVFSC
Trigger: GCAACTGAAAACTCTAAGGGTTCCACATTGGAACGTGAAGCTGCATTTTTCCAGGGCTCTCAGCAGAACCGTGGAAGCATCGTGCTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 90 bp TTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAAAACCTTGATTTaGCTGTCTTGGCTCAGAAGATCAAAGCTCCCGCGGAGAAGGAGA +
Preference number: 1 (lower is better)
Translates to: FLCPSLRGTDPKTLI*LSWLRRSKLPRRRR
Trigger: TCTCCTTCTCCGCGGGAGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAGGTTTTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR TCA 90 bp GGGGCATTTCACTCTTCCGATGTAGTCACTGTGGCTTTGGCATTGTaGGCTCAGCTCTGTACTTGCAGCAGAAGAGGAAGAAAGTATAGA +
Preference number: 1 (lower is better)
Translates to: GAFHSSDVVTVALAL*AQLCTCSRRGRKYR
Trigger: TCTATACTTTCTTCCTCTTCTGCTGCAAGTACAGAGCTGAGCTCACAATGCCAAAGCCACAGTGACTACATCGGAAGAGTGAAATGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR TCA 90 bp TTATCAAGTAACTGTCCAGTAAGACCTGGGATTAACACGCACTGCTaGAAGACTAGGAAAAGGAGAGCTGAGGAGGCTCAGAAGGCACAG +
Preference number: 1 (lower is better)
Translates to: LSSNCPVRPGINTHC*KTRKRRAEEAQKAQ
Trigger: CTGTGCCTTCTGAGCCTCCTCAGCTCTCCTTTTCCTAGTCTTTCAGCAGTGCGTGTTAATCCCAGGTCTTACTGGACAGTTACTTGATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 90 bp AGGCCTGCCAGTGACATGATGTCACAGAGGAGTAACATTTGGCTCTaGGGTTACCTCTTACCCCTTATTCAAAGGCTTCTTCCCTTTTTC +
Preference number: 1 (lower is better)
Translates to: RPASDMMSQRSNIWL*GYLLPLIQRLLPFF
Trigger: GAAAAAGGGAAGAAGCCTTTGAATAAGGGGTAAGAGGTAACCCCAGAGCCAAATGTTACTCCTCTGTGACATCATGTCACTGGCAGGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 90 bp AAATGCAGCTTCACGTTCCAATGTGGAACCCTTAGAGTTTTCAGTTaGACTGCCGGGTTTTCTTCTGTACACTTATCAAGTAACTGTCCA +
Preference number: 1 (lower is better)
Translates to: KCSFTFQCGTLRVFS*TAGFSSVHLSSNCP
Trigger: TGGACAGTTACTTGATAAGTGTACAGAAGAAAACCCGGCAGTGCAACTGAAAACTCTAAGGGTTCCACATTGGAACGTGAAGCTGCATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR TCA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGGCTGAGGCCTGCCAGTaGCATGATGTCACAGAGGAG +
Preference number: 2 (lower is better)
Translates to: VSFCCASPSAISEVRTWEAEACQ*HDVTEE
Trigger: CTCCTCTGTGACATCATGTCACTGGCAGGCCTCAGC...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR TCA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGTCTTTCCCTGGACCCTaGATATCTGAGAGGGGCCCT +
Preference number: 2 (lower is better)
Translates to: VSFCCASPSAISEVRTWESFPGP*ISERGP
Trigger: AGGGCCCCTCTCAGATATTCAGGGTCCAGGGAAAGA...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR TCA 90 bp GACCAGAAGATGCACAGAGGTTTAACGAGGCCACTGTCCCCGAATGTCAGGGGCGTGGCTTTGGCATTGTaGGCTCAGCTCTGTACTTGC +
Preference number: 2 (lower is better)
Translates to: DQKMHRGLTRPLSPNVRGVALAL*AQLCTC
Trigger: GCAAGTACAGAGCTGAGCTCACAATGCCAAAGCCAC...GCCCCTGACATTCGGGGACAGTGGCCTCGTTAAACCTCTGTGCATCTTCTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR CCA 90 bp AAGTGGGGTGAGGAGACTCGCCTGTTCTCATCCTCTTTTCAGGAACAACTTGCACGAGGTCCCCCATTCTaGGTTCCTCTATTTCCGGGG +
Preference number: 2 (lower is better)
Translates to: KWGEETRLFSSSFQEQLARGPPF*VPLFPG
Trigger: CCCCGGAAATAGAGGAACCCAGAATGGGGGACCTCG...TGCAAGTTGTTCCTGAAAAGAGGATGAGAACAGGCGAGTCTCCTCACCCCACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR GCA 90 bp TTAGAGGGTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACGGTTTCTCCTTCCTATaGCCTTCCTTAAGAGGCACA +
Preference number: 2 (lower is better)
Translates to: LEGKFLLCFPLSNQRGQDGFSFL*PSLRGT
Trigger: TGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAAACC...GTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTACCCTCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CAA 90 bp CTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAAAACCTTGATTaGCCTGTCTTGGCTCAGAAGATCAAAGCTCCCGCGGAGAAGGAG +
Preference number: 2 (lower is better)
Translates to: LPMPFLKRHRSKNLD*PVLAQKIKAPAEKE
Trigger: CTCCTTCTCCGCGGGAGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAGGTTTTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR GCA 90 bp GCCTCCCACAAAGTTTCAATAGGACCAGAAGATGCACAGAGGTTTAACGAGGCCAAGACCCTGCCAGACTaGCCAAGGAAGAAACTCAGA +
Preference number: 2 (lower is better)
Translates to: ASHKVSIGPEDAQRFNEAKTLPD*PRKKLR
Trigger: TCTGAGTTTCTTCCTTGGGCAGTCTGGCAGGGTCTT...GGCCTCGTTAAACCTCTGTGCATCTTCTGGTCCTATTGAAACTTTGTGGGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR GCA 90 bp ATTAGGGTCTGGTTTCTCCTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAATCACTCGGTAGAGACTaGAGCCTCCTCCTGTCAGAA +
Preference number: 2 (lower is better)
Translates to: IRVWFLLPMPFLKRHRSKSLGRD*SLLLSE
Trigger: TTCTGACAGGAGGAGGCTGCAGTCTCTACCGAGTGA...TTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAAACCAGACCCTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR CCA 90 bp TTCTCCTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAAAACCTTGATTTGCAGGGAGGTGAAGCTATaGCGAGCAAGAGAAGGGCCA +
Preference number: 2 (lower is better)
Translates to: FSFLCPSLRGTDPKTLICREVKL*RAREGP
Trigger: TGGCCCTTCTCTTGCTCGCCATAGCTTCACCTCCCT...GCAAATCAAGGTTTTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR CCA 90 bp GCCTCCCACAAAGTTTCAATAGGACCAGAAGATGCACAGAGGTTTAACGAGGCCCAGAGGAGTAACATTTaGCTCTGGGGTTACCTCTTA +
Preference number: 2 (lower is better)
Translates to: ASHKVSIGPEDAQRFNEAQRSNI*LWGYLL
Trigger: TAAGAGGTAACCCCAGAGCCAAATGTTACTCCTCTG...GGCCTCGTTAAACCTCTGTGCATCTTCTGGTCCTATTGAAACTTTGTGGGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 72 bp TCGGTAGAGACTGCAGCCTCCTCCTGTCAGAATCTCTaGGCTAGGGAGTGCGAGGTCCCCCATTCTGGGTTC +
Preference number: 3 (lower is better)
Translates to: SVETAASSCQNL*ARECEVPHSGF
Trigger: GAACCCAGAATGGGGGACCTCGCACTCCCTAGCCCAGAGATTCTGACAGGAGGAGGCTGCAGTCTCTACCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 72 bp CTAGAAGCTCTGGCTCACAGGAGGGAGGTGAAGCTATaGCGAGCAAGAGAAGGGCCACGTCTTTCCCTGGAC +
Preference number: 3 (lower is better)
Translates to: LEALAHRREVKL*RAREGPRLSLD
Trigger: GTCCAGGGAAAGACGTGGCCCTTCTCTTGCTCGCCATAGCTTCACCTCCCTCCTGTGAGCCAGAGCTTCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 72 bp GAGGGAGGAGAGAGCTTAGAGGGTAAGTTTCTGCTGTaGTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTG +
Preference number: 3 (lower is better)
Translates to: EGGESLEGKFLL*FPLSNQRGQDL
Trigger: CAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTACCCTCTAAGCTCTCTCCTCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR CAA 90 bp TTAGAGGGTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCCACTCCGAGACCCCTaGGGTGTGACTGGAGTATCT +
Preference number: 3 (lower is better)
Translates to: LEGKFLLCFPLSNQRGQDPLRDP*GVTGVS
Trigger: AGATACTCCAGTCACACCCAAGGGGTCTCGGAGTGG...GTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTACCCTCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 72 bp CCCAATACCCATTTCATAAACAAGACCCTGCCAGACTaGCCAAGGAAGAAACTCAGAAGCGGCGCGGCGAGC +
Preference number: 3 (lower is better)
Translates to: PNTHFINKTLPD*PRKKLRSGAAS
Trigger: GCTCGCCGCGCCGCTTCTGAGTTTCTTCCTTGGGCAGTCTGGCAGGGTCTTGTTTATGAAATGGGTATTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR TCA 72 bp ACTCAGAAGCGGCGCGGCGAGCTCTGGGCTTCCAAGTaGATGCATGAGCGGAAGGTTTATGTGGGTGATTTA +
Preference number: 3 (lower is better)
Translates to: TQKRRGELWASK*MHERKVYVGDL
Trigger: TAAATCACCCACATAAACCTTCCGCTCATGCATTCACTTGGAAGCCCAGAGCTCGCCGCGCCGCTTCTGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR TCA 72 bp CCTAGGGCAAGGAACAGCTATGGGGAAGGTCTGGGCTaGGCTTGCTCTTCAGTTCTCCCAATACCCATTTCA +
Preference number: 3 (lower is better)
Translates to: PRARNSYGEGLG*ACSSVLPIPIS
Trigger: TGAAATGGGTATTGGGAGAACTGAAGAGCAAGCTCAGCCCAGACCTTCCCCATAGCTGTTCCTTGCCCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 72 bp TCTAACCTAGGGCAAGGAACAGCTATGGGGAAGGTCTaGGCTGAGCTTGCTCTTCAGTTCTCCCAATACCCA +
Preference number: 3 (lower is better)
Translates to: SNLGQGTAMGKV*AELALQFSQYP
Trigger: TGGGTATTGGGAGAACTGAAGAGCAAGCTCAGCCCAGACCTTCCCCATAGCTGTTCCTTGCCCTAGGTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR TCA 72 bp AACTGTCCAGTAAGACCTGGGATTAACACGCACTGCTaGAAGACTAGGAAAAGGAGAGCTGAGGAGGCTCAG +
Preference number: 3 (lower is better)
Translates to: NCPVRPGINTHC*KTRKRRAEEAQ
Trigger: CTGAGCCTCCTCAGCTCTCCTTTTCCTAGTCTTTCAGCAGTGCGTGTTAATCCCAGGTCTTACTGGACAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR TCA 72 bp TCTGAACACAGAAGCACGATGCTTCCACGGTTCTGCTaGGAGCCCTGGAAAAATGCAGCTTCACGTTCCAAT +
Preference number: 3 (lower is better)
Translates to: SEHRSTMLPRFC*EPWKNAASRSN
Trigger: ATTGGAACGTGAAGCTGCATTTTTCCAGGGCTCTCAGCAGAACCGTGGAAGCATCGTGCTTCTGTGTTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 72 bp GATGCTTCCACGGTTCTGCTGAGAGCCCTGGAAAAATaGAGCTTCACGTTCCAATGTGGAACCCTTAGAGTT +
Preference number: 3 (lower is better)
Translates to: DASTVLLRALEK*SFTFQCGTLRV
Trigger: AACTCTAAGGGTTCCACATTGGAACGTGAAGCTGCATTTTTCCAGGGCTCTCAGCAGAACCGTGGAAGCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 72 bp AGAGGCACAGATCCAAAAACCTTGATTTGCCTGTCTTaGCTCAGAAGATCAAAGCTCCCGCGGAGAAGGAGA +
Preference number: 3 (lower is better)
Translates to: RGTDPKTLICLS*LRRSKLPRRRR
Trigger: TCTCCTTCTCCGCGGGAGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAGGTTTTTGGATCTGTGCCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 72 bp CCTGCCAGTGACATGATGTCACAGAGGAGTAACATTTaGCTCTGGGGTTACCTCTTACCCCTTATTCAAAGG +
Preference number: 3 (lower is better)
Translates to: PASDMMSQRSNI*LWGYLLPLIQR
Trigger: CCTTTGAATAAGGGGTAAGAGGTAACCCCAGAGCCAAATGTTACTCCTCTGTGACATCATGTCACTGGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 72 bp TGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTaGGAGAAGGGACATATTTCAGACTGCAATAAATTA +
Preference number: 3 (lower is better)
Translates to: CASPSAISEVRT*EKGHISDCNKL
Trigger: TAATTTATTGCAGTCTGAAATATGTCCCTTCTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 72 bp GAGTCTGACTTTAAAGTTCTGAACACAGAAGCACGATaGTTCCACGGTTCTGCTGAGAGCCCTGGAAAAATG +
Preference number: 3 (lower is better)
Translates to: ESDFKVLNTEAR*FHGSAESPGKM
Trigger: CATTTTTCCAGGGCTCTCAGCAGAACCGTGGAAGCATCGTGCTTCTGTGTTCAGAACTTTAAAGTCAGACTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR CAA 90 bp GCCTCCCACAAAGTTTCAATAGGACCAGAAGATGCACAGAGGTTTAACGAGGCCCAAAGTGTTAGATTCTaGAATAATCAACAGCGGGGA +
Preference number: 3 (lower is better)
Translates to: ASHKVSIGPEDAQRFNEAQSVRF*NNQQRG
Trigger: TCCCCGCTGTTGATTATTCAAGAATCTAACACTTTG...GGCCTCGTTAAACCTCTGTGCATCTTCTGGTCCTATTGAAACTTTGTGGGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR-3UTR CAA 90 bp ATTAGGGTCTGGTTTCTCCTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAACTTGATTTGCCTGTCTaGGCTCAGAAGATCAAAGCT +
Preference number: 3 (lower is better)
Translates to: IRVWFLLPMPFLKRHRSKLDLPV*AQKIKA
Trigger: AGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAG...TTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAAACCAGACCCTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR TCA 72 bp CTTGCAGAATTTTATAACAGTTTTGAGACCTACGAGTaGGCTACAAAGTGTCACTCGGTAGAGACTGCAGCC +
Preference number: 3 (lower is better)
Translates to: LAEFYNSFETYE*ATKCHSVETAA
Trigger: GGCTGCAGTCTCTACCGAGTGACACTTTGTAGCTCACTCGTAGGTCTCAAAACTGTTATAAAATTCTGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CCA 72 bp AGTGACATGATGTCACAGAGGAGTAACATTTGGCTCTaGGGTTACCTCTTACCCCTTATTCAAAGGCTTCTT +
Preference number: 3 (lower is better)
Translates to: SDMMSQRSNIWL*GYLLPLIQRLL
Trigger: AAGAAGCCTTTGAATAAGGGGTAAGAGGTAACCCCAGAGCCAAATGTTACTCCTCTGTGACATCATGTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR GCA 72 bp TTCACGTTCCAATGTGGAACCCTTAGAGTTTTCAGTTaGACTGCCGGGTTTTCTTCTGTACACTTATCAAGT +
Preference number: 3 (lower is better)
Translates to: FTFQCGTLRVFS*TAGFSSVHLSS
Trigger: ACTTGATAAGTGTACAGAAGAAAACCCGGCAGTGCAACTGAAAACTCTAAGGGTTCCACATTGGAACGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR TCA 90 bp GCTCACAGGAGGGAGGTGAAGCTATGGCGAGCAAGAGAAGGGCCACGTCTTTCCTGCAGAAGTACTTGGTaGCCCGCCGGCGGCACTGCT +
Preference number: 4 (lower is better)
Translates to: AHRREVKLWRAREGPRLSCRSTW*PAGGTA
Trigger: AGCAGTGCCGCCGGCGGGTCACCAAGTACTTCTGCA...GGAAAGACGTGGCCCTTCTCTTGCTCGCCATAGCTTCACCTCCCTCCTGTGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp GCTCACAGGAGGGAGGTGAAGCTATGGCGAGCAAGAGAAGGGCCACGTCTTTCCTCTGCGTGGTGCAGCTaGCGGACACACCGTGGCACT +
Preference number: 4 (lower is better)
Translates to: AHRREVKLWRAREGPRLSSAWCS*RTHRGT
Trigger: AGTGCCACGGTGTGTCCGGCAGCTGCACCACGCAGA...GGAAAGACGTGGCCCTTCTCTTGCTCGCCATAGCTTCACCTCCCTCCTGTGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp GACCAGAAGATGCACAGAGGTTTAACGAGGCCACTGTCCCCGAATGTCAGGGGCTCTGGGCGGCCGCTCTaGGCGGCTGCAGAAGTACTT +
Preference number: 4 (lower is better)
Translates to: DQKMHRGLTRPLSPNVRGSGRPL*AAAEVL
Trigger: AAGTACTTCTGCAGCCGCGCAGAGCGGCCGCCCAGA...GCCCCTGACATTCGGGGACAGTGGCCTCGTTAAACCTCTGTGCATCTTCTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp GCTCACAGGAGGGAGGTGAAGCTATGGCGAGCAAGAGAAGGGCCACGTCTTTCCGCAGAGCTGATGGCGTaGACAAATGCTGTCTCCCGG +
Preference number: 4 (lower is better)
Translates to: AHRREVKLWRAREGPRLSAELMA*TNAVSR
Trigger: CCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGC...GGAAAGACGTGGCCCTTCTCTTGCTCGCCATAGCTTCACCTCCCTCCTGTGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp CCTGCCTACTACAGACCTCTACCACTCCGAGACCCCTTGGGTGTGACTGGAGTACAGCGGCCACGCTGCTaGAGTAGACCAGGTAAGCCT +
Preference number: 4 (lower is better)
Translates to: PAYYRPLPLRDPLGVTGVQRPRC*SRPGKP
Trigger: AGGCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTG...TACTCCAGTCACACCCAAGGGGTCTCGGAGTGGTAGAGGTCTGTAGTAGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGTCTTCAATACCACTCTaGGCGCCAGCGGCCACGCTG +
Preference number: 4 (lower is better)
Translates to: VSFCCASPSAISEVRTWESSIPL*APAATL
Trigger: CAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGA...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGCGGAACTCTGGCAGTTaGAACCAGCAGGTCTGCGTG +
Preference number: 4 (lower is better)
Translates to: VSFCCASPSAISEVRTWERNSGS*NQQVCV
Trigger: CACGCAGACCTGCTGGTTGCAACTGCCAGAGTTCCG...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp GCTCACAGGAGGGAGGTGAAGCTATGGCGAGCAAGAGAAGGGCCACGTCTTTCCTACTTCTCCTTCAAGTaGGCGCCTACCTCCCGGAAC +
Preference number: 4 (lower is better)
Translates to: AHRREVKLWRAREGPRLSYFSFK*APTSRN
Trigger: GTTCCGGGAGGTAGGCGCGCACTTGAAGGAGAAGTA...GGAAAGACGTGGCCCTTCTCTTGCTCGCCATAGCTTCACCTCCCTCCTGTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp CCTGCCTACTACAGACCTCTACCACTCCGAGACCCCTTGGGTGTGACTGGAGTACCAGCCTCATTGTTGTaGAGATTCATGGCTGCCCGG +
Preference number: 4 (lower is better)
Translates to: PAYYRPLPLRDPLGVTGVPASLL*RFMAAR
Trigger: CCGGGCAGCCATGAATCTGCACAACAATGAGGCTGG...TACTCCAGTCACACCCAAGGGGTCTCGGAGTGGTAGAGGTCTGTAGTAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp CTTGATTTGCCTGTCTTGGCTCAGAAGATCAAAGCTCCCGCGGAGAAGGAGACAGCACCAGCTCGCGGGTaGAGATGGAGCGGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: LDLPVLAQKIKAPAEKETAPARG*RWSGRC
Trigger: ACACCTTCCGCTCCATCTCCACCCGCGAGCTGGTGC...TGTCTCCTTCTCCGCGGGAGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR TCA 90 bp GCCTCCCACAAAGTTTCAATAGGACCAGAAGATGCACAGAGGTTTAACGAGGCCGTTTCATGGTGCCCTTaGCCGCCTTGCGGCCAGCCT +
Preference number: 4 (lower is better)
Translates to: ASHKVSIGPEDAQRFNEAVSWCP*PPCGQP
Trigger: AGGCTGGCCGCAAGGCGGTCAAGGGCACCATGAAAC...GGCCTCGTTAAACCTCTGTGCATCTTCTGGTCCTATTGAAACTTTGTGGGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp GCCTCCCACAAAGTTTCAATAGGACCAGAAGATGCACAGAGGTTTAACGAGGCCTGCAACCAGCAGGTCTaGGTGGTGCAGCTGCCGGAC +
Preference number: 4 (lower is better)
Translates to: ASHKVSIGPEDAQRFNEACNQQV*VVQLPD
Trigger: GTCCGGCAGCTGCACCACGCAGACCTGCTGGTTGCA...GGCCTCGTTAAACCTCTGTGCATCTTCTGGTCCTATTGAAACTTTGTGGGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp AAAACTGCCTCCCACAAAGTTTCAATAGGACCAGAAGATGCACAGAGGTTTAACGGCCCGCCGCGCTGTTaGCCGCGCCTTGCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: KTASHKVSIGPEDAQRFNGPPRC*PRLAAG
Trigger: ACCTGCTGCAAGGCGCGGGCAACAGCGCGGCGGGCC...GTTAAACCTCTGTGCATCTTCTGGTCCTATTGAAACTTTGTGGGAGGCAGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp GCTGAGCTTGCTCTTCAGTTCTCCCAATACCCATTTCATAAACAAGACCCTGCCGCTCGCGGGTGGAGATaGAGCGGAAGGTGTCGGCGA +
Preference number: 4 (lower is better)
Translates to: AELALQFSQYPFHKQDPAARGWR*SGRCRR
Trigger: TCGCCGACACCTTCCGCTCCATCTCCACCCGCGAGC...GGCAGGGTCTTGTTTATGAAATGGGTATTGGGAGAACTGAAGAGCAAGCTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp TTCTCCTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAAAACCTTGATTTGCACAGCCGGCGACAACTaGGGCGCTCCCAGCGACCCA +
Preference number: 4 (lower is better)
Translates to: FSFLCPSLRGTDPKTLICTAGDN*GAPSDP
Trigger: TGGGTCGCTGGGAGCGCCGCAGTTGTCGCCGGCTGT...GCAAATCAAGGTTTTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp CCTGCCTACTACAGACCTCTACCACTCCGAGACCCCTTGGGTGTGACTGGAGTAAGCACCAGTGAAACTTaGAGTTGCAGCTGGACACTG +
Preference number: 4 (lower is better)
Translates to: PAYYRPLPLRDPLGVTGVSTSET*SCSWTL
Trigger: CAGTGTCCAGCTGCAACTGCAAGTTTCACTGGTGCT...TACTCCAGTCACACCCAAGGGGTCTCGGAGTGGTAGAGGTCTGTAGTAGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGGAAGTCCACCATGGCTaGACAGCTGTAAAGCTCTCT +
Preference number: 4 (lower is better)
Translates to: VSFCCASPSAISEVRTWEEVHHG*TAVKLS
Trigger: AGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTC...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp ATTAGGGTCTGGTTTCTCCTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAACTGTTGCCCGCGCCTTaGAGCAGGTCCACCTTGAGC +
Preference number: 4 (lower is better)
Translates to: IRVWFLLPMPFLKRHRSKLLPAP*SRSTLS
Trigger: GCTCAAGGTGGACCTGCTGCAAGGCGCGGGCAACAG...TTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAAACCAGACCCTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGCATCCACAAACTGCTTaGAAATTGCCTCTCCGAAGC +
Preference number: 4 (lower is better)
Translates to: VSFCCASPSAISEVRTWEHPQTA*KLPLRS
Trigger: GCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATG...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp AAGTGGGGTGAGGAGACTCGCCTGTTCTCATCCTCTTTTCAGGAACAACTTGCACTGCCGGACACACCGTaGCACTTACACGTGCGTTTC +
Preference number: 4 (lower is better)
Translates to: KWGEETRLFSSSFQEQLALPDTP*HLHVRF
Trigger: GAAACGCACGTGTAAGTGCCACGGTGTGTCCGGCAG...TGCAAGTTGTTCCTGAAAAGAGGATGAGAACAGGCGAGTCTCCTCACCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CAA 72 bp CCTGCCTACTACAGACCTCTACCACTCCGAGACCCCTaGGGTGTGACTGGAGTATCTTTGGTGTTTAGGAAG +
Preference number: 4 (lower is better)
Translates to: PAYYRPLPLRDP*GVTGVSLVFRK
Trigger: CTTCCTAAACACCAAAGATACTCCAGTCACACCCAAGGGGTCTCGGAGTGGTAGAGGTCTGTAGTAGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR TCA 90 bp CTTGATTTGCCTGTCTTGGCTCAGAAGATCAAAGCTCCCGCGGAGAAGGAGACAGGTGAAGGACACAAGTaGCTAGAAGAACGCACACGG +
Preference number: 4 (lower is better)
Translates to: LDLPVLAQKIKAPAEKETGEGHK*LEERTR
Trigger: CCGTGTGCGTTCTTCTAGTCACTTGTGTCCTTCACC...TGTCTCCTTCTCCGCGGGAGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR TCA 90 bp TGCCCTTCCTTAAGAGGCACAGATCCAAAAACCTTGATTTGCCTGTCTTGGCTCCGGAGAAAGGCAGGGTaGGCGACTCAAACATTGAGA +
Preference number: 4 (lower is better)
Translates to: CPSLRGTDPKTLICLSWLRRKAG*ATQTLR
Trigger: TCTCAATGTTTGAGTCGCTCACCCTGCCTTTCTCCG...GAGCCAAGACAGGCAAATCAAGGTTTTTGGATCTGTGCCTCTTAAGGAAGGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp AAGGTTTATGTGGGTGATTTACTAATCCTTGGCAGATTAACCTCAGTCAAATCAACTCTCGGCCCTCGGTaGCCAGCAGCCCCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: KVYVGDLLILGRLTSVKSTLGPR*PAAPGS
Trigger: AGACCCTGGGGCTGCTGGGCACCGAGGGCCGAGAGT...TGATTTGACTGAGGTTAATCTGCCAAGGATTAGTAAATCACCCACATAAACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp AAGTGGGGTGAGGAGACTCGCCTGTTCTCATCCTCTTTTCAGGAACAACTTGCAAGTGAAACTTGCAGTTaGAGCTGGACACTGTCTCGG +
Preference number: 4 (lower is better)
Translates to: KWGEETRLFSSSFQEQLASETCS*SWTLSR
Trigger: CCGAGACAGTGTCCAGCTGCAACTGCAAGTTTCACT...TGCAAGTTGTTCCTGAAAAGAGGATGAGAACAGGCGAGTCTCCTCACCCCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp AAGTGGGGTGAGGAGACTCGCCTGTTCTCATCCTCTTTTCAGGAACAACTTGCACTTCGAAGTCCACCATaGCTGGACAGCTGTAAAGCT +
Preference number: 4 (lower is better)
Translates to: KWGEETRLFSSSFQEQLALRSPP*LDSCKA
Trigger: AGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAG...TGCAAGTTGTTCCTGAAAAGAGGATGAGAACAGGCGAGTCTCCTCACCCCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CAA 72 bp CCCTTCCTTAAGAGGCACAGATCCAAAAACCTTGATTaGCCTGTCTTGGCTCAGAAGATCAAAGCTCCCGCG +
Preference number: 4 (lower is better)
Translates to: PFLKRHRSKNLD*PVLAQKIKAPA
Trigger: CGCGGGAGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAGGTTTTTGGATCTGTGCCTCTTAAGGAAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp GCTGAGCTTGCTCTTCAGTTCTCCCAATACCCATTTCATAAACAAGACCCTGCCAAACTGCTTGGAAATTaGCTCTCCGAAGCCCACGTT +
Preference number: 4 (lower is better)
Translates to: AELALQFSQYPFHKQDPAKLLGN*LSEAHV
Trigger: AACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTT...GGCAGGGTCTTGTTTATGAAATGGGTATTGGGAGAACTGAAGAGCAAGCTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR GCA 90 bp AAGGTTTATGTGGGTGATTTACTAATCCTTGGCAGATTAACCTCAGTCAAATCAAGCAGGTCTGCGTGGTaGAGCTGCCGGACACACCGT +
Preference number: 4 (lower is better)
Translates to: KVYVGDLLILGRLTSVKSSRSAW*SCRTHR
Trigger: ACGGTGTGTCCGGCAGCTGCACCACGCAGACCTGCT...TGATTTGACTGAGGTTAATCTGCCAAGGATTAGTAAATCACCCACATAAACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp AAGGTTTATGTGGGTGATTTACTAATCCTTGGCAGATTAACCTCAGTCAAATCAACCAGCAGGTCTGCGTaGTGCAGCTGCCGGACACAC +
Preference number: 4 (lower is better)
Translates to: KVYVGDLLILGRLTSVKSTSRSA*CSCRTH
Trigger: GTGTGTCCGGCAGCTGCACCACGCAGACCTGCTGGT...TGATTTGACTGAGGTTAATCTGCCAAGGATTAGTAAATCACCCACATAAACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp AAGGAGACAAAGTTAGACGCTGCTATGATACAAAGTAATCAGAAAATGATTGCCACTTGCAGTTGCAGCTaGACACTGTCTCGGCGCGGC +
Preference number: 4 (lower is better)
Translates to: KETKLDAAMIQSNQKMIATCSCS*TLSRRG
Trigger: GCCGCGCCGAGACAGTGTCCAGCTGCAACTGCAAGT...GGCAATCATTTTCTGATTACTTTGTATCATAGCAGCGTCTAACTTTGTCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR TCA 90 bp AAGGTTTATGTGGGTGATTTACTAATCCTTGGCAGATTAACCTCAGTCAAATCAGCAGCAGGTCCACCTTaGGCGCCGCATGATACTTCT +
Preference number: 4 (lower is better)
Translates to: KVYVGDLLILGRLTSVKSAAGPP*APHDTS
Trigger: AGAAGTATCATGCGGCGCTCAAGGTGGACCTGCTGC...TGATTTGACTGAGGTTAATCTGCCAAGGATTAGTAAATCACCCACATAAACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR TCA 90 bp AAGGAGACAAAGTTAGACGCTGCTATGATACAAAGTAATCAGAAAATGATTGCCACCTTGAGCGCCGCATaGTACTTCTCCTTCAAGTGC +
Preference number: 4 (lower is better)
Translates to: KETKLDAAMIQSNQKMIATLSAA*YFSFKC
Trigger: GCACTTGAAGGAGAAGTATCATGCGGCGCTCAAGGT...GGCAATCATTTTCTGATTACTTTGTATCATAGCAGCGTCTAACTTTGTCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
3UTR CAA 72 bp CTTTTCAGGAACAACTTGCAGAATTTTATAACAGTTTaGAGACCTACGAGTGAGCTACAAAGTGTCACTCGG +
Preference number: 4 (lower is better)
Translates to: LFRNNLQNFITV*RPTSELQSVTR
Trigger: CCGAGTGACACTTTGTAGCTCACTCGTAGGTCTCAAAACTGTTATAAAATTCTGCAAGTTGTTCCTGAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CCA 90 bp AAGGTTTATGTGGGTGATTTACTAATCCTTGGCAGATTAACCTCAGTCAAATCACGGTCCCAAGCAAACTaGTATTTACATTCTTCAATA +
Preference number: 4 (lower is better)
Translates to: KVYVGDLLILGRLTSVKSRSQAN*YLHSSI
Trigger: TATTGAAGAATGTAAATACCAGTTTGCTTGGGACCG...TGATTTGACTGAGGTTAATCTGCCAAGGATTAGTAAATCACCCACATAAACCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS TCA 90 bp CAGCGCCTCTGGGCGGCCGCTCTGCGCGGCTGCAGAAGTACTTGGTaGCCCGCCGGCGGCACTGCTCGCAGCGGACCGCGCAGCACCAGT +
Preference number: 5 (lower is better)
Translates to: QRLWAAALRGCRSTW*PAGGTARSGPRSTS
Trigger: ACTGGTGCTGCGCGGTCCGCTGCGAGCAGTGCCGCCGGCGGGTCACCAAGTACTTCTGCAGCCGCGCAGAGCGGCCGCCCAGAGGCGCTG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 90 bp GATGCACCAGCTCGCGGGTGGAGATGGAGCGGAAGGTGTCGGCGATaGCTCCGCGGCCCGCCGCGCTGTTGCCCGCGCCTTGCAGCAGGT +
Preference number: 5 (lower is better)
Translates to: DAPARGWRWSGRCRR*LRGPPRCCPRLAAG
Trigger: ACCTGCTGCAAGGCGCGGGCAACAGCGCGGCGGGCCGCGGAGCCATCGCCGACACCTTCCGCTCCATCTCCACCCGCGAGCTGGTGCATC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS GCA 90 bp GGAGTTCTTTCCCGGTTTGTGCGCAGCGCCTCTGGGCGGCCGCTCTaGGCGGCTGCAGAAGTACTTGGTGACCCGCCGGCGGCACTGCTC +
Preference number: 5 (lower is better)
Translates to: GVLSRFVRSASGRPL*AAAEVLGDPPAALL
Trigger: GAGCAGTGCCGCCGGCGGGTCACCAAGTACTTCTGCAGCCGCGCAGAGCGGCCGCCCAGAGGCGCTGCGCACAAACCGGGAAAGAACTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 90 bp AGTAGTCTGGGGAGTCCTCCAGATGCACCAGCTCGCGGGTGGAGATaGAGCGGAAGGTGTCGGCGATGGCTCCGCGGCCCGCCGCGCTGT +
Preference number: 5 (lower is better)
Translates to: SSLGSPPDAPARGWR*SGRCRRWLRGPPRC
Trigger: ACAGCGCGGCGGGCCGCGGAGCCATCGCCGACACCTTCCGCTCCATCTCCACCCGCGAGCTGGTGCATCTGGAGGACTCCCCAGACTACT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 90 bp AGTTGCAACCAGCAGGTCTGCGTGGTGCAGCTGCCGGACACACCGTaGCACTTACACGTGCGTTTCATGGTGCCCTTGACCGCCTTGCGG +
Preference number: 5 (lower is better)
Translates to: SCNQQVCVVQLPDTP*HLHVRFMVPLTALR
Trigger: CCGCAAGGCGGTCAAGGGCACCATGAAACGCACGTGTAAGTGCCACGGTGTGTCCGGCAGCTGCACCACGCAGACCTGCTGGTTGCAACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGGCTGTTGCCCGCGCCTaGCAGCAGGTCCACCTTGAG +
Preference number: 5 (lower is better)
Translates to: VSFCCASPSAISEVRTWEAVARA*QQVHLE
Trigger: CTCAAGGTGGACCTGCTGCAAGGCGCGGGCAACAGC...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS GCA 90 bp ATGGCTGCCCGGGCATCTTGTCCTGTCTCGAGGGCATCCACAAACTaGTTGGAAATTGCCTCTCCGAAGCCCACGTTGTCACTGCAGCCT +
Preference number: 5 (lower is better)
Translates to: MAARASCPVSRASTN*LEIASPKPTLSLQP
Trigger: AGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp GCTCACAGGAGGGAGGTGAAGCTATGGCGAGCAAGAGAAGGGCCACGTCTTTCCCAAACTGCTTGGAAATaGCCTCTCCGAAGCCCACGT +
Preference number: 5 (lower is better)
Translates to: AHRREVKLWRAREGPRLSQTAWK*PLRSPR
Trigger: ACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTG...GGAAAGACGTGGCCCTTCTCTTGCTCGCCATAGCTTCACCTCCCTCCTGTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp GGGTTCCTCTATTTCCGGGGGTCTCTAAAGGAAGCCGAGGACGAACAGGGGTGGGCATCCACAAACTGCTaGGAAATTGCCTCTCCGAAG +
Preference number: 5 (lower is better)
Translates to: GFLYFRGSLKEAEDEQGWASTNC*EIASPK
Trigger: CTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGC...CCACCCCTGTTCGTCCTCGGCTTCCTTTAGAGACCCCCGGAAATAGAGGAACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp CTTGATTTGCCTGTCTTGGCTCAGAAGATCAAAGCTCCCGCGGAGAAGGAGACACCGGAACTCTGGCAGTaGCAACCAGCAGGTCTGCGT +
Preference number: 5 (lower is better)
Translates to: LDLPVLAQKIKAPAEKETPELWQ*QPAGLR
Trigger: ACGCAGACCTGCTGGTTGCAACTGCCAGAGTTCCGG...TGTCTCCTTCTCCGCGGGAGCTTTGATCTTCTGAGCCAAGACAGGCAAATCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp GTAAGTTTCTGCTGTGCTTCCCCCTCAGCAATCAGCGAGGTCAGGACCTGGGAGAGACCAGGTAAGCCTTaGGACCGGTCATCAGAAAAT +
Preference number: 5 (lower is better)
Translates to: VSFCCASPSAISEVRTWERPGKP*DRSSEN
Trigger: ATTTTCTGATGACCGGTCCAAAGGCTTACCTGGTCT...CTCCCAGGTCCTGACCTCGCTGATTGCTGAGGGGGAAGCACAGCAGAAACTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp CTGAGGCCTGCCAGTGACATGATGTCACAGAGGAGTAACATTTGGCTCTGGGGTTTGCGGCCAGCCTCATaGTTGTGCAGATTCATGGCT +
Preference number: 5 (lower is better)
Translates to: LRPASDMMSQRSNIWLWGLRPAS*LCRFMA
Trigger: AGCCATGAATCTGCACAACAATGAGGCTGGCCGCAA...ACCCCAGAGCCAAATGTTACTCCTCTGTGACATCATGTCACTGGCAGGCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp TTCTCCTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAAAACCTTGATTTGCCGTTTCATGGTGCCCTaGACCGCCTTGCGGCCAGCC +
Preference number: 5 (lower is better)
Translates to: FSFLCPSLRGTDPKTLICRFMVP*TALRPA
Trigger: GGCTGGCCGCAAGGCGGTCAAGGGCACCATGAAACG...GCAAATCAAGGTTTTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 90 bp ATTTACATTCTTCAATACCACTCTGGGCGCCAGCGGCCACGCTGCTaGAGTAGACCAGGTAAGCCTTTGGACCGGTCATCAGAAAATTGT +
Preference number: 5 (lower is better)
Translates to: IYILQYHSGRQRPRC*SRPGKPLDRSSENC
Trigger: ACAATTTTCTGATGACCGGTCCAAAGGCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp ATTAGGGTCTGGTTTCTCCTTCCTATGCCCTTCCTTAAGAGGCACAGATCCAAACGGCCAGCCTCATTGTaGTGCAGATTCATGGCTGCC +
Preference number: 5 (lower is better)
Translates to: IRVWFLLPMPFLKRHRSKRPASL*CRFMAA
Trigger: GGCAGCCATGAATCTGCACAACAATGAGGCTGGCCG...TTTGGATCTGTGCCTCTTAAGGAAGGGCATAGGAAGGAGAAACCAGACCCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS-3UTR CAA 90 bp AAAACTGCCTCCCACAAAGTTTCAATAGGACCAGAAGATGCACAGAGGTTTAACGAGTTCTTTCCCGGTTaGTGCGCAGCGCCTCTGGGC +
Preference number: 5 (lower is better)
Translates to: KTASHKVSIGPEDAQRFNEFFPG*CAAPLG
Trigger: GCCCAGAGGCGCTGCGCACAAACCGGGAAAGAACTC...GTTAAACCTCTGTGCATCTTCTGGTCCTATTGAAACTTTGTGGGAGGCAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS TCA 72 bp TGGGCGGCCGCTCTGCGCGGCTGCAGAAGTACTTGGTaGCCCGCCGGCGGCACTGCTCGCAGCGGACCGCGC +
Preference number: 6 (lower is better)
Translates to: WAAALRGCRSTW*PAGGTARSGPR
Trigger: GCGCGGTCCGCTGCGAGCAGTGCCGCCGGCGGGTCACCAAGTACTTCTGCAGCCGCGCAGAGCGGCCGCCCA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 72 bp GCTCGCGGGTGGAGATGGAGCGGAAGGTGTCGGCGATaGCTCCGCGGCCCGCCGCGCTGTTGCCCGCGCCTT +
Preference number: 6 (lower is better)
Translates to: ARGWRWSGRCRR*LRGPPRCCPRL
Trigger: AAGGCGCGGGCAACAGCGCGGCGGGCCGCGGAGCCATCGCCGACACCTTCCGCTCCATCTCCACCCGCGAGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CAA 90 bp TGCGCAGCGCCTCTGGGCGGCCGCTCTGCGCGGCTGCAGAAGTACTaGGTGACCCGCCGGCGGCACTGCTCGCAGCGGACCGCGCAGCAC +
Preference number: 6 (lower is better)
Translates to: CAAPLGGRSARLQKY*VTRRRHCSQRTAQH
Trigger: GTGCTGCGCGGTCCGCTGCGAGCAGTGCCGCCGGCGGGTCACCAAGTACTTCTGCAGCCGCGCAGAGCGGCCGCCCAGAGGCGCTGCGCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CAA 72 bp AAGGTGTCGGCGATGGCTCCGCGGCCCGCCGCGCTGTaGCCCGCGCCTTGCAGCAGGTCCACCTTGAGCGCC +
Preference number: 6 (lower is better)
Translates to: KVSAMAPRPAAL*PAPCSRSTLSA
Trigger: GGCGCTCAAGGTGGACCTGCTGCAAGGCGCGGGCAACAGCGCGGCGGGCCGCGGAGCCATCGCCGACACCTT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CAA 72 bp CCTCTGGGCGGCCGCTCTGCGCGGCTGCAGAAGTACTaGGTGACCCGCCGGCGGCACTGCTCGCAGCGGACC +
Preference number: 6 (lower is better)
Translates to: PLGGRSARLQKY*VTRRRHCSQRT
Trigger: GGTCCGCTGCGAGCAGTGCCGCCGGCGGGTCACCAAGTACTTCTGCAGCCGCGCAGAGCGGCCGCCCAGAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS GCA 72 bp TCCCGGTTTGTGCGCAGCGCCTCTGGGCGGCCGCTCTaGGCGGCTGCAGAAGTACTTGGTGACCCGCCGGCG +
Preference number: 6 (lower is better)
Translates to: SRFVRSASGRPL*AAAEVLGDPPA
Trigger: CGCCGGCGGGTCACCAAGTACTTCTGCAGCCGCGCAGAGCGGCCGCCCAGAGGCGCTGCGCACAAACCGGGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 72 bp GGGAGTCCTCCAGATGCACCAGCTCGCGGGTGGAGATaGAGCGGAAGGTGTCGGCGATGGCTCCGCGGCCCG +
Preference number: 6 (lower is better)
Translates to: GSPPDAPARGWR*SGRCRRWLRGP
Trigger: CGGGCCGCGGAGCCATCGCCGACACCTTCCGCTCCATCTCCACCCGCGAGCTGGTGCATCTGGAGGACTCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CAA 72 bp GATGGCTCCGCGGCCCGCCGCGCTGTTGCCCGCGCCTaGCAGCAGGTCCACCTTGAGCGCCGCATGATACTT +
Preference number: 6 (lower is better)
Translates to: DGSAARRAVARA*QQVHLERRMIL
Trigger: AAGTATCATGCGGCGCTCAAGGTGGACCTGCTGCAAGGCGCGGGCAACAGCGCGGCGGGCCGCGGAGCCATC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS TCA 72 bp CCCGCGCCTTGCAGCAGGTCCACCTTGAGCGCCGCATaGTACTTCTCCTTCAAGTGCGCGCCTACCTCCCGG +
Preference number: 6 (lower is better)
Translates to: PAPCSRSTLSAA*YFSFKCAPTSR
Trigger: CCGGGAGGTAGGCGCGCACTTGAAGGAGAAGTATCATGCGGCGCTCAAGGTGGACCTGCTGCAAGGCGCGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS GCA 72 bp TTCAAGTGCGCGCCTACCTCCCGGAACTCTGGCAGTTaGAACCAGCAGGTCTGCGTGGTGCAGCTGCCGGAC +
Preference number: 6 (lower is better)
Translates to: FKCAPTSRNSGS*NQQVCVVQLPD
Trigger: GTCCGGCAGCTGCACCACGCAGACCTGCTGGTTGCAACTGCCAGAGTTCCGGGAGGTAGGCGCGCACTTGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 72 bp CAGCAGGTCTGCGTGGTGCAGCTGCCGGACACACCGTaGCACTTACACGTGCGTTTCATGGTGCCCTTGACC +
Preference number: 6 (lower is better)
Translates to: QQVCVVQLPDTP*HLHVRFMVPLT
Trigger: GGTCAAGGGCACCATGAAACGCACGTGTAAGTGCCACGGTGTGTCCGGCAGCTGCACCACGCAGACCTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CAA 90 bp GCTGCCCGGGCATCTTGTCCTGTCTCGAGGGCATCCACAAACTGCTaGGAAATTGCCTCTCCGAAGCCCACGTTGTCACTGCAGCCTCCC +
Preference number: 6 (lower is better)
Translates to: AARASCPVSRASTNC*EIASPKPTLSLQPP
Trigger: GGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 72 bp CTTCAATACCACTCTGGGCGCCAGCGGCCACGCTGCTaGAGTAGACCAGGTAAGCCTTTGGACCGGTCATCA +
Preference number: 6 (lower is better)
Translates to: LQYHSGRQRPRC*SRPGKPLDRSS
Trigger: TGATGACCGGTCCAAAGGCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS GCA 72 bp CGGGCATCTTGTCCTGTCTCGAGGGCATCCACAAACTaGTTGGAAATTGCCTCTCCGAAGCCCACGTTGTCA +
Preference number: 6 (lower is better)
Translates to: RASCPVSRASTN*LEIASPKPTLS
Trigger: TGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 72 bp AATGCTGTCTCCCGGTTAGCGCTTCGAAGTCCACCATaGCTGGACAGCTGTAAAGCTCTCTCGGGGCAATTC +
Preference number: 6 (lower is better)
Translates to: NAVSRLALRSPP*LDSCKALSGQF
Trigger: GAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCGCTAACCGGGAGACAGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CCA 72 bp CATCTTGTCCTGTCTCGAGGGCATCCACAAACTGCTTaGAAATTGCCTCTCCGAAGCCCACGTTGTCACTGC +
Preference number: 6 (lower is better)
Translates to: HLVLSRGHPQTA*KLPLRSPRCHC
Trigger: GCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5
CDS CAA 72 bp GCATCTTGTCCTGTCTCGAGGGCATCCACAAACTGCTaGGAAATTGCCTCTCCGAAGCCCACGTTGTCACTG +
Preference number: 6 (lower is better)
Translates to: ASCPVSRASTNC*EIASPKPTLSL
Trigger: CAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041163.5