RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WNT7B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022382

Ensembl transcript IDs: ENSMUST00000023015.15, ENSMUST00000109424.4, ENSMUST00000167968.9, ENSMUST00000229191.2, ENSMUST00000229495.2

Found 254 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGGCTGACCGAGTGCAGGCGCAGGTGCCTGGCAGCCCAGGGACAGTaGGAATTGCCTCGGTGGCATCAGGGGCCCCCGAGGGTCTGTTTC +
Preference number: 1 (lower is better)
Translates to: RLTECRRRCLAAQGQ*ELPRWHQGPPRVCF
Trigger: GAAACAGACCCTCGGGGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCTGCGCCTGCACTCGGTCAGCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR GCA 90 bp TCTCCCCCAAGGCAAGGTCTGCGGCTGACCGAGTGCAGGCGCAGGTaGCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAG +
Preference number: 1 (lower is better)
Translates to: SPPRQGLRLTECRRR*LAAQGQCELPRWHQ
Trigger: CTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCTGCGCCTGCACTCGGTCAGCCGCAGACCTTGCCTTGGGGGAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR GCA 90 bp CGGCCACCTCCACCCCAGCACACAGCATTGGGACAGCCAGTGCCCTaGCTGGGTCCACTAACCACCTCTCTCCCCCAAGGCAAGGTCTGC +
Preference number: 1 (lower is better)
Translates to: RPPPPQHTALGQPVP*LGPLTTSLPQGKVC
Trigger: GCAGACCTTGCCTTGGGGGAGAGAGGTGGTTAGTGGACCCAGGCAGGGCACTGGCTGTCCCAATGCTGTGTGCTGGGGTGGAGGTGGCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR GCA 90 bp CCCTCCTGTGCCTGCAGCTGGCAGCTCCAGAAGCAAAGAAGGATGTaGAAAATAATGGCGAGGGCCGCAGGGTCGGCAGGGGCCGAGCGC +
Preference number: 1 (lower is better)
Translates to: PSCACSWQLQKQRRM*KIMARAAGSAGAER
Trigger: GCGCTCGGCCCCTGCCGACCCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 90 bp CACTGGGCGACGGACGTGGGTATCCCAGGACTTGGGGTGAGGAGATaGGGCCAGGATCAGGGTGGGACATTTCCAGTGGCCCAGAGGCTT +
Preference number: 1 (lower is better)
Translates to: HWATDVGIPGLGVRR*GQDQGGTFPVAQRL
Trigger: AAGCCTCTGGGCCACTGGAAATGTCCCACCCTGATCCTGGCCCCATCTCCTCACCCCAAGTCCTGGGATACCCACGTCCGTCGCCCAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 90 bp TCCTCACAGGGGACACTGGGCGACGGACGTGGGTATCCCAGGACTTaGGGTGAGGAGATGGGGCCAGGATCAGGGTGGGACATTTCCAGT +
Preference number: 1 (lower is better)
Translates to: SSQGTLGDGRGYPRT*GEEMGPGSGWDISS
Trigger: ACTGGAAATGTCCCACCCTGATCCTGGCCCCATCTCCTCACCCCAAGTCCTGGGATACCCACGTCCGTCGCCCAGTGTCCCCTGTGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR TCA 90 bp CTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACTGTCCCTaGCCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTGGC +
Preference number: 1 (lower is better)
Translates to: LQIALCPSVMWGNCP*PLLNLWGSPGCQVG
Trigger: GCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGACAGTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 90 bp GGTGCAGCCTCCCATCACCCTGGCAACTTCCAGAGTTGGGCTGGATaGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCC +
Preference number: 1 (lower is better)
Translates to: GAASHHPGNFQSWAG*GCVSIFISQSRGVS
Trigger: GGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGTGATGGGAGGCTGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 90 bp AGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGAGGAAAGGGTaGGATATGCCCAGGCCTGAGTTCTTCTGTCCCCATCTGGAAGGG +
Preference number: 1 (lower is better)
Translates to: SPGSFLPCHVLWRKG*DMPRPEFFCPHLEG
Trigger: CCCTTCCAGATGGGGACAGAAGAACTCAGGCCTGGGCATATCCCACCCTTTCCTCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 90 bp TCCCTGACCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTaGCTCCAGAGGAGAAGAGAATTTGTAAACTGGAGGTGGAGGTTG +
Preference number: 1 (lower is better)
Translates to: SLTSPEPVGQSWVSG*LQRRREFVNWRWRL
Trigger: CAACCTCCACCTCCAGTTTACAAATTCTCTTCTCCTCTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 90 bp TGGCCCAGAGGCTTGGAACATCCTGACATGATAGGGACACACAGCTaGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCCCAGGTCAA +
Preference number: 1 (lower is better)
Translates to: WPRGLEHPDMIGTHS*MQGKGKQGSPSPGQ
Trigger: TTGACCTGGGGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGGATGTTCCAAGCCTCTGGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 90 bp AAACAAGGGTCACCTTCCCCAGGTCAATGTCCAGGCCACCTGGCTTaGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGAAA +
Preference number: 1 (lower is better)
Translates to: KQGSPSPGQCPGHLA*WPPNPTFPWTSAMK
Trigger: TTTCATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGGACATTGACCTGGGGAAGGTGACCCTTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR TCA 90 bp TTCTCTGGCATCAGGATCACAGAAGAAGGACAAAACCCAAGGTACTaGAAAGGGGGTGCAGCCTCCCATCACCCTGGCAACTTCCAGAGT +
Preference number: 1 (lower is better)
Translates to: FSGIRITEEGQNPRY*KGGAASHHPGNFQS
Trigger: ACTCTGGAAGTTGCCAGGGTGATGGGAGGCTGCACCCCCTTTTCAGTACCTTGGGTTTTGTCCTTCTTCTGTGATCCTGATGCCAGAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 90 bp AGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTaGAGGAAAGGGTGGGATATGCCCAGGCCTGAGTTCTTCTGTCCC +
Preference number: 1 (lower is better)
Translates to: SCIISPGSFLPCHVL*RKGWDMPRPEFFCP
Trigger: GGGACAGAAGAACTCAGGCCTGGGCATATCCCACCCTTTCCTCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 90 bp TTGTGGTTCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTaGGTACCAGACCACCATTGCGTTGACCTTGGATGCTGGGCGGGG +
Preference number: 1 (lower is better)
Translates to: LWFTFPKRSKGICLH*VPDHHCVDLGCWAG
Trigger: CCCCGCCCAGCATCCAAGGTCAACGCAATGGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGAACCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR TCA 90 bp TGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATaGAACACCTTAGTGTGGGGTAGGCTGTGGGCAGTTGTATTATCA +
Preference number: 1 (lower is better)
Translates to: WLGGHQTPHFHGLLL*NTLVWGRLWAVVLS
Trigger: TGATAATACAACTGCCCACAGCCTACCCCACACTAAGGTGTTTCATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 90 bp TTTCTGTGTCCAGTCACAGGCAGGGAGGTGACCCTCAGAGTCTCATaGTCCCTTTGTGGTTCACTTTCCCAAAGAGAAGTAAAGGGATTT +
Preference number: 1 (lower is better)
Translates to: FLCPVTGREVTLRVS*SLCGSLSQREVKGF
Trigger: AAATCCCTTTACTTCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAGACTCTGAGGGTCACCTCCCTGCCTGTGACTGGACACAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCCCACCCTCCTGTGCCTaGAGCTGGCAGCTCCAGAAG +
Preference number: 2 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPPPSCA*SWQLQK
Trigger: CTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGG...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCCCAGGCCACCTGGCTTaGTGGCCACCAAACCCCACA +
Preference number: 2 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPPGHLA*WPPNPT
Trigger: TGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGG...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGGCCGGGAGGAGTGAGGGAAGGGTGTCCTCAAATAGGGTTAGGTCTGGCTACCATCCCCACCCTCCTGTaGCTGCAGCTGGCAGCTCCA +
Preference number: 2 (lower is better)
Translates to: GPGGVREGCPQIGLGLATIPTLL*LQLAAP
Trigger: TGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT...GGTAGCCAGACCTAACCCTATTTGAGGACACCCTTCCCTCACTCCTCCCGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGAGGAGCAGAGGACCCTaGAGGGAGGGGCCGGGAGGA +
Preference number: 2 (lower is better)
Translates to: GHLAWWPPNPTFPWTSAMRSRGP*REGPGG
Trigger: TCCTCCCGGCCCCTCCCTGCAGGGTCCTCTGCTCCT...CATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACCCACCCTCCTGTGCCTaGAGCTGGCAGCTCCAGAAG +
Preference number: 2 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHPPSCA*SWQLQK
Trigger: CTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGG...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAAGGAGAGGACGAGGCATaGCTGGAGCCTGACACAAGG +
Preference number: 2 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQGEDEA*LEPDTR
Trigger: CCTTGTGTCAGGCTCCAGGCATGCCTCGTCCTCTCC...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp TCCCTGACCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTGGCTCCAGAGATTGGCTGTCCTCTaGGGCCATCTCAGGCCTTGT +
Preference number: 2 (lower is better)
Translates to: SLTSPEPVGQSWVSGWLQRLAVL*GHLRPC
Trigger: ACAAGGCCTGAGATGGCCGCAGAGGACAGCCAATCT...CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGAGGTTGGCAGCAGGCTaGGAGGGTGAAGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: GHLAWWPPNPTFPWTSAMRLAAG*EGEGPG
Trigger: CCCTGGTCCTTCACCCTCCCAGCCTGCTGCCAACCT...CATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACGGGCCAGGATCAGGGTaGGACATTTCCAGTGGCCCA +
Preference number: 2 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHGPGSG*DISSGP
Trigger: TGGGCCACTGGAAATGTCCCACCCTGATCCTGGCCC...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACGGGTATCCCAGGACTTaGGGTGAGGAGATGGGGCCA +
Preference number: 2 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHGYPRT*GEEMGP
Trigger: TGGCCCCATCTCCTCACCCCAAGTCCTGGGATACCC...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCCTCATGGTCCCTTTGTaGTTCACTTTCCCAAAGAGA +
Preference number: 2 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPLMVPL*FTFPKR
Trigger: TCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAG...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCAGAGAATTTGTAAACTaGAGGTGGAGGTTGGCAGCA +
Preference number: 2 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPREFVN*RWRLAA
Trigger: TGCTGCCAACCTCCACCTCCAGTTTACAAATTCTCT...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CAA 90 bp GATGGGGCCAGGATCAGGGTGGGACATTTCCAGTGGCCCAGAGGCTaGGAACATCCTGACATGATAGGGACACACAGCTGGATGCAAGGC +
Preference number: 2 (lower is better)
Translates to: DGARIRVGHFQWPRG*EHPDMIGTHSWMQG
Trigger: GCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGGATGTTCCAAGCCTCTGGGCCACTGGAAATGTCCCACCCTGATCCTGGCCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGCTGGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGCCACCCTCCTGTGCCTaGAGCTGGCAGCTCCAGAAG +
Preference number: 2 (lower is better)
Translates to: GWMGLCQYIYFTEPWGLQPPSCA*SWQLQK
Trigger: CTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGG...CTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGCTGGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGATCCCCACCCTCCTGTaGCTGCAGCTGGCAGCTCCA +
Preference number: 2 (lower is better)
Translates to: GWMGLCQYIYFTEPWGLQIPTLL*LQLAAP
Trigger: TGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT...CTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAAGGACACACAGCTGGATaGAAGGCAAGGGCAAACAAG +
Preference number: 2 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQGHTAG*KARANK
Trigger: CTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCC...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp CCTGACATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTGTGGGGCAGTCCTaGGTGTCAGGTTGGCTCCAG +
Preference number: 2 (lower is better)
Translates to: PDMIGTHSWMQGKGKQGSPVGQS*VSGWLQ
Trigger: CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGG...TGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR TCA 90 bp CCTGACATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCATGGGGCAACTGTCCCTaGCCTCTCCTGAACCTGTGG +
Preference number: 2 (lower is better)
Translates to: PDMIGTHSWMQGKGKQGSWGNCP*PLLNLW
Trigger: CCACAGGTTCAGGAGAGGTCAGGGACAGTTGCCCCA...TGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTAGGAGCAGAGGACCCTaGAGGGAGGGGCCGGGAGGA +
Preference number: 2 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFRSRGP*REGPGG
Trigger: TCCTCCCGGCCCCTCCCTGCAGGGTCCTCTGCTCCT...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCAAGGGACATTTGATTTaGATGACAGTCTCCAAATGG +
Preference number: 2 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPKGHLI*MTVSKW
Trigger: CCATTTGGAGACTGTCATGCAAATCAAATGTCCCTT...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACAGGTTGGCAGCAGGCTaGGAGGGTGAAGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: GSPVNLQIALCPSVMWGNRLAAG*EGEGPG
Trigger: CCCTGGTCCTTCACCCTCCCAGCCTGCTGCCAACCT...GTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGAGGTTGGCAGCAGGCTaGGAGGGTGAAGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: RAVGSPVNLQIALCPSVMRLAAG*EGEGPG
Trigger: CCCTGGTCCTTCACCCTCCCAGCCTGCTGCCAACCT...CATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR TCA 90 bp AGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACTGTCCCTaGCCTCTCCTGAACCTGTGG +
Preference number: 2 (lower is better)
Translates to: RAVGSPVNLQIALCPSVMWGNCP*PLLNLW
Trigger: CCACAGGTTCAGGAGAGGTCAGGGACAGTTGCCCCA...CATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGACCACCCTCCTGTGCCTaGAGCTGGCAGCTCCAGAAG +
Preference number: 2 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGPPSCA*SWQLQK
Trigger: CTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGG...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGAATCCCCACCCTCCTGTaGCTGCAGCTGGCAGCTCCA +
Preference number: 2 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGIPTLL*LQLAAP
Trigger: TGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGTCCTGGGTGTCAGGTTaGCTCCAGAGGAGAAGAGAA +
Preference number: 2 (lower is better)
Translates to: GHLAWWPPNPTFPWTSAMSWVSG*LQRRRE
Trigger: TTCTCTTCTCCTCTGGAGCCAACCTGACACCCAGGA...CATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CAA 90 bp CAAACAAGGGTCACCTTCCCCAGGTCAATGTCCAGGCCACCTGGCTaGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGAA +
Preference number: 2 (lower is better)
Translates to: QTRVTFPRSMSRPPG*VATKPHISMDFCYE
Trigger: TTCATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGGACATTGACCTGGGGAAGGTGACCCTTGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCGACATCCTCGAGTTCTaGAAGGAGCAGAGGACCCTG +
Preference number: 2 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSDILEF*KEQRTL
Trigger: CAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTC...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCAGATTGGCTGTCCTCTaGGGCCATCTCAGGCCTTGT +
Preference number: 2 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSRLAVL*GHLRPC
Trigger: ACAAGGCCTGAGATGGCCGCAGAGGACAGCCAATCT...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAAAGTCTCCAAATGGAATaGAAGATTGGCTGTCCTCTG +
Preference number: 2 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQSLQME*KIGCPL
Trigger: CAGAGGACAGCCAATCTTCCATTCCATTTGGAGACT...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAACCTGTGGGGCAGTCCTaGGTGTCAGGTTGGCTCCAG +
Preference number: 2 (lower is better)
Translates to: GWGCVSIFISQSRGVSSKPVGQS*VSGWLQ
Trigger: CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGG...TTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGACCTCTCCTGAACCTGTaGGGCAGTCCTGGGTGTCAG +
Preference number: 2 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGPLLNL*GSPGCQ
Trigger: CTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGG...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp ATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGTCCAAGCAAAGAAGGATGTaGAAAATAATGGCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: ISGLVGPPSPSQGADKESKQRRM*KIMARA
Trigger: GGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT...GGACTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACGACATCCTCGAGTTCTaGAAGGAGCAGAGGACCCTG +
Preference number: 2 (lower is better)
Translates to: GSPVNLQIALCPSVMWGNDILEF*KEQRTL
Trigger: CAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTC...GTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp TCCCTGACCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTGGCTCCAGAAGGGACATTTGATTTaGATGACAGTCTCCAAATGG +
Preference number: 2 (lower is better)
Translates to: SLTSPEPVGQSWVSGWLQKGHLI*MTVSKW
Trigger: CCATTTGGAGACTGTCATGCAAATCAAATGTCCCTT...CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTGGAGAGGACGAGGCATaGCTGGAGCCTGACACAAGG +
Preference number: 2 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFGEDEA*LEPDTR
Trigger: CCTTGTGTCAGGCTCCAGGCATGCCTCGTCCTCTCC...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACCTCATGGTCCCTTTGTaGTTCACTTTCCCAAAGAGA +
Preference number: 2 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHLMVPL*FTFPKR
Trigger: TCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAG...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GATGTCAGTTCTCTGGCATCAGGATCACAGAAGAAGGACAAAACCCAAGGTACTAGGTTGGCAGCAGGCTaGGAGGGTGAAGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: DVSSLASGSQKKDKTQGTRLAAG*EGEGPG
Trigger: CCCTGGTCCTTCACCCTCCCAGCCTGCTGCCAACCT...AGTACCTTGGGTTTTGTCCTTCTTCTGTGATCCTGATGCCAGAGAACTGACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTCCTCTCCTGAACCTGTaGGGCAGTCCTGGGTGTCAG +
Preference number: 2 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFPLLNL*GSPGCQ
Trigger: CTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGG...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAACCTCTCCTGAACCTGTaGGGCAGTCCTGGGTGTCAG +
Preference number: 2 (lower is better)
Translates to: GWGCVSIFISQSRGVSSKPLLNL*GSPGCQ
Trigger: CTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGG...TTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCCCCTGCCATGTGTTGTaGAGGAAAGGGTGGGATATG +
Preference number: 2 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSPCHVL*RKGWDM
Trigger: CATATCCCACCCTTTCCTCCACAACACATGGCAGGG...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACTTGTATTATCAGCCCTaGCAGTTTCTTACCCTGCCA +
Preference number: 2 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHLYYQP*QFLTLP
Trigger: TGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAA...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CAA 90 bp GGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTaGTGGAGGAAAGGGTGGGATATGCCCAGGCCTGAGTTCTTCTGT +
Preference number: 2 (lower is better)
Translates to: GSCIISPGSFLPCHV*WRKGWDMPRPEFFC
Trigger: ACAGAAGAACTCAGGCCTGGGCATATCCCACCCTTTCCTCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR TCA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGACAAAACCCAAGGTACTaGAAAGGGGGTGCAGCCTCC +
Preference number: 2 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGQNPRY*KGGAAS
Trigger: GGAGGCTGCACCCCCTTTTCAGTACCTTGGGTTTTG...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp CCTGACATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCAAAGGGCCTGAGGAAATaGGACATTAAGCTTCCCACG +
Preference number: 2 (lower is better)
Translates to: PDMIGTHSWMQGKGKQGSKGLRK*DIKLPT
Trigger: CGTGGGAAGCTTAATGTCCCATTTCCTCAGGCCCTT...TGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAAAGATTGGCTGTCCTCTaGGGCCATCTCAGGCCTTGT +
Preference number: 2 (lower is better)
Translates to: GWGCVSIFISQSRGVSSKRLAVL*GHLRPC
Trigger: ACAAGGCCTGAGATGGCCGCAGAGGACAGCCAATCT...TTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCCTGTGGGGCAGTCCTaGGTGTCAGGTTGGCTCCAG +
Preference number: 2 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPPVGQS*VSGWLQ
Trigger: CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGG...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp CCAGGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTTACATCCCTAAATTCTaGATGTCAGTTCTCTGGCAT +
Preference number: 2 (lower is better)
Translates to: PGHLAWWPPNPTFPWTSAYIPKF*MSVLWH
Trigger: ATGCCAGAGAACTGACATCCAGAATTTAGGGATGTA...AGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CAA 90 bp TCCAGTCACAGGCAGGGAGGTGACCCTCAGAGTCTCATGGTCCCTTaGTGGTTCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCAT +
Preference number: 2 (lower is better)
Translates to: SSHRQGGDPQSLMVP*WFTFPKRSKGICLH
Trigger: ATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAGACTCTGAGGGTCACCTCCCTGCCTGTGACTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp TATCAGTGGACACTAGGCAGGGGGCCTGACCAATACATCCCTAAATTCTGGATGGGGATTTGTCTCCATTaGGTACCAGACCACCATTGC +
Preference number: 2 (lower is better)
Translates to: YQWTLGRGPDQYIPKFWMGICLH*VPDHHC
Trigger: GCAATGGTGGTCTGGTACCCAATGGAGACAAATCCC...CATCCAGAATTTAGGGATGTATTGGTCAGGCCCCCTGCCTAGTGTCCACTGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTTCCTGGGTGTCAGGTTaGCTCCAGAGGAGAAGAGAA +
Preference number: 2 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFSWVSG*LQRRRE
Trigger: TTCTCTTCTCCTCTGGAGCCAACCTGACACCCAGGA...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACAAGCAAAGAAGGATGTaGAAAATAATGGCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: GSPVNLQIALCPSVMWGNKQRRM*KIMARA
Trigger: GGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT...GTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAAGGGATTTGTCTCCATTaGGTACCAGACCACCATTGC +
Preference number: 2 (lower is better)
Translates to: GWGCVSIFISQSRGVSSKGICLH*VPDHHC
Trigger: GCAATGGTGGTCTGGTACCCAATGGAGACAAATCCC...TTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGAGTCTCCAAATGGAATaGAAGATTGGCTGTCCTCTG +
Preference number: 2 (lower is better)
Translates to: RAVGSPVNLQIALCPSVMSLQME*KIGCPL
Trigger: CAGAGGACAGCCAATCTTCCATTCCATTTGGAGACT...CATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCATGACAGTCTCCAAATaGAATGGAAGATTGGCTGTC +
Preference number: 2 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSMTVSK*NGRLAV
Trigger: GACAGCCAATCTTCCATTCCATTTGGAGACTGTCAT...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGAGAGAATTTGTAAACTaGAGGTGGAGGTTGGCAGCA +
Preference number: 2 (lower is better)
Translates to: RAVGSPVNLQIALCPSVMREFVN*RWRLAA
Trigger: TGCTGCCAACCTCCACCTCCAGTTTACAAATTCTCT...CATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp GGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACATGACAGTCTCCAAATaGAATGGAAGATTGGCTGTC +
Preference number: 2 (lower is better)
Translates to: GSPVNLQIALCPSVMWGNMTVSK*NGRLAV
Trigger: GACAGCCAATCTTCCATTCCATTTGGAGACTGTCAT...GTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCTACATCCCTAAATTCTaGATGTCAGTTCTCTGGCAT +
Preference number: 2 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSYIPKF*MSVLWH
Trigger: ATGCCAGAGAACTGACATCCAGAATTTAGGGATGTA...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAAAAGCAAAGAAGGATGTaGAAAATAATGGCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: GWGCVSIFISQSRGVSSKKQRRM*KIMARA
Trigger: GGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT...TTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp AGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGAAGGGACATTTGATTTaGATGACAGTCTCCAAATGG +
Preference number: 2 (lower is better)
Translates to: RAVGSPVNLQIALCPSVMKGHLI*MTVSKW
Trigger: CCATTTGGAGACTGTCATGCAAATCAAATGTCCCTT...CATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp TCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTGGGTACCAGACCACCAAGCAAAGAAGGATGTaGAAAATAATGGCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: SLSQREVKGFVSIGYQTTKQRRM*KIMARA
Trigger: GGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT...GGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp GATGTCAGTTCTCTGGCATCAGGATCACAGAAGAAGGACAAAACCCAAGGTACTAAGCAAAGAAGGATGTaGAAAATAATGGCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: DVSSLASGSQKKDKTQGTKQRRM*KIMARA
Trigger: GGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT...AGTACCTTGGGTTTTGTCCTTCTTCTGTGATCCTGATGCCAGAGAACTGACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGAAGTAAATCTTCAGATTaGCCTCTGTCCATCTGTCAT +
Preference number: 2 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGSKSSD*PLSICH
Trigger: ATGACAGATGGACAGAGGGCAATCTGAAGATTTACT...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTGGGATTTGTCTCCATTaGGTACCAGACCACCATTGC +
Preference number: 2 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPGICLH*VPDHHC
Trigger: GCAATGGTGGTCTGGTACCCAATGGAGACAAATCCC...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR GCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTAGTAAATCTTCAGATTaGCCTCTGTCCATCTGTCAT +
Preference number: 2 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFSKSSD*PLSICH
Trigger: ATGACAGATGGACAGAGGGCAATCTGAAGATTTACT...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CCA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTAGAGAATTTGTAAACTaGAGGTGGAGGTTGGCAGCA +
Preference number: 2 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPREFVN*RWRLAA
Trigger: TGCTGCCAACCTCCACCTCCAGTTTACAAATTCTCT...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR GCA 72 bp CTCTCTCCCCCAAGGCAAGGTCTGCGGCTGACCGAGTaGAGGCGCAGGTGCCTGGCAGCCCAGGGACAGTGC +
Preference number: 3 (lower is better)
Translates to: LSPPRQGLRLTE*RRRCLAAQGQC
Trigger: GCACTGTCCCTGGGCTGCCAGGCACCTGCGCCTGCACTCGGTCAGCCGCAGACCTTGCCTTGGGGGAGAGAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR TCA 72 bp CTAACCACCTCTCTCCCCCAAGGCAAGGTCTGCGGCTaGCCGAGTGCAGGCGCAGGTGCCTGGCAGCCCAGG +
Preference number: 3 (lower is better)
Translates to: LTTSLPQGKVCG*PSAGAGAWQPR
Trigger: CCTGGGCTGCCAGGCACCTGCGCCTGCACTCGGTCAGCCGCAGACCTTGCCTTGGGGGAGAGAGGTGGTTAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR GCA 72 bp AGGCAAGGTCTGCGGCTGACCGAGTGCAGGCGCAGGTaGCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGG +
Preference number: 3 (lower is better)
Translates to: RQGLRLTECRRR*LAAQGQCELPR
Trigger: CCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCTGCGCCTGCACTCGGTCAGCCGCAGACCTTGCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 72 bp TGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTaGCATCAGGGGCCCCCGAGGGTCTGTTTCAAGCAG +
Preference number: 3 (lower is better)
Translates to: CLAAQGQCELPR*HQGPPRVCFKQ
Trigger: CTGCTTGAAACAGACCCTCGGGGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp TCCCTGACCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTGGCTCCAGACCATTGCGTTGACCTaGGATGCTGGGCGGGGACAG +
Preference number: 3 (lower is better)
Translates to: SLTSPEPVGQSWVSGWLQTIALT*DAGRGQ
Trigger: CTGTCCCCGCCCAGCATCCAAGGTCAACGCAATGGT...CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 72 bp ACGGACGTGGGTATCCCAGGACTTGGGGTGAGGAGATaGGGCCAGGATCAGGGTGGGACATTTCCAGTGGCC +
Preference number: 3 (lower is better)
Translates to: TDVGIPGLGVRR*GQDQGGTFPVA
Trigger: GGCCACTGGAAATGTCCCACCCTGATCCTGGCCCCATCTCCTCACCCCAAGTCCTGGGATACCCACGTCCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp GCCATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGACCATTGCGTTGACCTaGGATGCTGGGCGGGGACAG +
Preference number: 3 (lower is better)
Translates to: AISGLVGPPSPSQGADKETIALT*DAGRGQ
Trigger: CTGTCCCCGCCCAGCATCCAAGGTCAACGCAATGGT...CTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGATGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR TCA 72 bp GCCCTCTGTCCATCTGTCATGTGGGGCAACTGTCCCTaGCCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGT +
Preference number: 3 (lower is better)
Translates to: ALCPSVMWGNCP*PLLNLWGSPGC
Trigger: ACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGACAGTTGCCCCACATGACAGATGGACAGAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR GCA 72 bp GCCTGCAGCTGGCAGCTCCAGAAGCAAAGAAGGATGTaGAAAATAATGGCGAGGGCCGCAGGGTCGGCAGGG +
Preference number: 3 (lower is better)
Translates to: ACSWQLQKQRRM*KIMARAAGSAG
Trigger: CCCTGCCGACCCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTTCTGGAGCTGCCAGCTGCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR GCA 72 bp AGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTaGCCGGCCACCTCCACCCCAGCACACAGCATTGGG +
Preference number: 3 (lower is better)
Translates to: SPSEVGHFKDMW*PATSTPAHSIG
Trigger: CCCAATGCTGTGTGCTGGGGTGGAGGTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 72 bp CACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTaGTGCCCGGCCACCTCCACCCCAGCACACAGCATT +
Preference number: 3 (lower is better)
Translates to: HSPSEVGHFKDM*CPATSTPAHSI
Trigger: AATGCTGTGTGCTGGGGTGGAGGTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCCAAGGGACATTTGATTaGCATGACAGTCTCCAAATG +
Preference number: 3 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPQGTFD*HDSLQM
Trigger: CATTTGGAGACTGTCATGCAAATCAAATGTCCCTTG...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 72 bp AAGGGTCACCTTCCCCAGGTCAATGTCCAGGCCACCTaGCTTGGTGGCCACCAAACCCCACATTTCCATGGA +
Preference number: 3 (lower is better)
Translates to: KGHLPQVNVQAT*LGGHQTPHFHG
Trigger: TCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGGACATTGACCTGGGGAAGGTGACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAAAAATGGAATGGAAGATaGGCTGTCCTCTGCGGCCAT +
Preference number: 3 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQKWNGR*AVLCGH
Trigger: ATGGCCGCAGAGGACAGCCAATCTTCCATTCCATTT...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR TCA 72 bp GTGTGGCCTTTCTGTGTCCAGTCACAGGCAGGGAGGTaGCCCTCAGAGTCTCATGGTCCCTTTGTGGTTCAC +
Preference number: 3 (lower is better)
Translates to: VWPFCVQSQAGR*PSESHGPFVVH
Trigger: GTGAACCACAAAGGGACCATGAGACTCTGAGGGTCACCTCCCTGCCTGTGACTGGACACAGAAAGGCCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR GCA 72 bp ACAGTCTCCAAATGGAATGGAAGATTGGCTGTCCTCTaGGGCCATCTCAGGCCTTGTAGGGCCACCAAGCCC +
Preference number: 3 (lower is better)
Translates to: TVSKWNGRLAVL*GHLRPCRATKP
Trigger: GGGCTTGGTGGCCCTACAAGGCCTGAGATGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR GCA 72 bp TACCCTGCCATGTGTTGTGGAGGAAAGGGTGGGATATaGCCAGGCCTGAGTTCTTCTGTCCCCATCTGGAAG +
Preference number: 3 (lower is better)
Translates to: YPAMCCGGKGGI*PGLSSSVPIWK
Trigger: CTTCCAGATGGGGACAGAAGAACTCAGGCCTGGGCATATCCCACCCTTTCCTCCACAACACATGGCAGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 72 bp ATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTaGAGGAAAGGGTGGGATATGCCCAGGCCTGAGTTC +
Preference number: 3 (lower is better)
Translates to: ISPGSFLPCHVL*RKGWDMPRPEF
Trigger: GAACTCAGGCCTGGGCATATCCCACCCTTTCCTCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp GGCTGGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGGCCCAGGAAACCGTTTaGAGTGTGACTGGTGGGTGT +
Preference number: 3 (lower is better)
Translates to: GWMGLCQYIYFTEPWGLQAQETV*SVTGGC
Trigger: ACACCCACCAGTCACACTCAAAACGGTTTCCTGGGC...CTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR GCA 72 bp TCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTaGCCTCTGTCCATCTGTCATGTGGGGCAACTGTCC +
Preference number: 3 (lower is better)
Translates to: SQSRGVSSKSSD*PLSICHVGQLS
Trigger: GGACAGTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 72 bp TCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTaGCTCCAGAGGAGAAGAGAATTTGTAAACTGGAGG +
Preference number: 3 (lower is better)
Translates to: SPEPVGQSWVSG*LQRRREFVNWR
Trigger: CCTCCAGTTTACAAATTCTCTTCTCCTCTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp GGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACGCCCAGGAAACCGTTTaGAGTGTGACTGGTGGGTGT +
Preference number: 3 (lower is better)
Translates to: GSPVNLQIALCPSVMWGNAQETV*SVTGGC
Trigger: ACACCCACCAGTCACACTCAAAACGGTTTCCTGGGC...GTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR TCA 72 bp GGCCACCAAACCCCACATTTCCATGGACTTCTGCTATaGAACACCTTAGTGTGGGGTAGGCTGTGGGCAGTT +
Preference number: 3 (lower is better)
Translates to: GHQTPHFHGLLL*NTLVWGRLWAV
Trigger: AACTGCCCACAGCCTACCCCACACTAAGGTGTTTCATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR CCA 72 bp CCAGTCACAGGCAGGGAGGTGACCCTCAGAGTCTCATaGTCCCTTTGTGGTTCACTTTCCCAAAGAGAAGTA +
Preference number: 3 (lower is better)
Translates to: PVTGREVTLRVS*SLCGSLSQREV
Trigger: TACTTCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAGACTCTGAGGGTCACCTCCCTGCCTGTGACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 72 bp GGTGCAGCCTCCCATCACCCTGGCAACTTCCAGAGTTaGGCTGGATGGGGCTGTGTCAGTATATTTATTTCA +
Preference number: 3 (lower is better)
Translates to: GAASHHPGNFQS*AGWGCVSIFIS
Trigger: TGAAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGTGATGGGAGGCTGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 72 bp TCCCATCACCCTGGCAACTTCCAGAGTTGGGCTGGATaGGGCTGTGTCAGTATATTTATTTCACAGAGCCGT +
Preference number: 3 (lower is better)
Translates to: SHHPGNFQSWAG*GCVSIFISQSR
Trigger: ACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGTGATGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 72 bp CTAGGCAGGGGGCCTGACCAATACATCCCTAAATTCTaGATGTCAGTTCTCTGGCATCAGGATCACAGAAGA +
Preference number: 3 (lower is better)
Translates to: LGRGPDQYIPKF*MSVLWHQDHRR
Trigger: TCTTCTGTGATCCTGATGCCAGAGAACTGACATCCAGAATTTAGGGATGTATTGGTCAGGCCCCCTGCCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR GCA 72 bp GAAAACATAAATAATTTTGTCAACATCCATCCACACTaGCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGT +
Preference number: 3 (lower is better)
Translates to: ENINNFVNIHPH*PGPAGNSPGNR
Trigger: ACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGTGTGGATGGATGTTGACAAAATTATTTATGTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CCA 72 bp CACAAGGGACATTTGATTTGCATGACAGTCTCCAAATaGAATGGAAGATTGGCTGTCCTCTGCGGCCATCTC +
Preference number: 3 (lower is better)
Translates to: HKGHLICMTVSK*NGRLAVLCGHL
Trigger: GAGATGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATCAAATGTCCCTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTGCCCAGGAAACCGTTTaGAGTGTGACTGGTGGGTGT +
Preference number: 3 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPAQETV*SVTGGC
Trigger: ACACCCACCAGTCACACTCAAAACGGTTTCCTGGGC...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp GATGTCAGTTCTCTGGCATCAGGATCACAGAAGAAGGACAAAACCCAAGGTACTCAAGGGACATTTGATTaGCATGACAGTCTCCAAATG +
Preference number: 3 (lower is better)
Translates to: DVSSLASGSQKKDKTQGTQGTFD*HDSLQM
Trigger: CATTTGGAGACTGTCATGCAAATCAAATGTCCCTTG...AGTACCTTGGGTTTTGTCCTTCTTCTGTGATCCTGATGCCAGAGAACTGACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
3UTR-3UTR CAA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCAAGGGACATTTGATTaGCATGACAGTCTCCAAATG +
Preference number: 3 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPQGTFD*HDSLQM
Trigger: CATTTGGAGACTGTCATGCAAATCAAATGTCCCTTG...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCGCTGGCACTCGTCGATaGCCATCTGCGCCCCCTCCC +
Preference number: 4 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPAGTRR*PSAPPP
Trigger: GGGAGGGGGCGCAGATGGGCATCGACGAGTGCCAGC...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS-3UTR GCA 90 bp AAGGATGTGCAAAATAATGGCGAGGGCCGCAGGGTCGGCAGGGGCCGAGCGCGCCCGGCGAGGTGCGGTTaGACAGACGGCCCTGCGTGC +
Preference number: 4 (lower is better)
Translates to: KDVQNNGEGRRVGRGRARPARCG*TDGPAC
Trigger: GCACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGG...GCGCGCTCGGCCCCTGCCGACCCTGCGGCCCTCGCCATTATTTTGCACATCCTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp TGTCAACATCCATCCACACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGGCAGCGGTGACAGCATaGGCCACGCCCGCCGCCGTG +
Preference number: 4 (lower is better)
Translates to: CQHPSTLPRAGRKQPRKPAAVTA*ATPAAV
Trigger: CACGGCGGCGGGCGTGGCGCATGCTGTCACCGCTGC...CGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGTGTGGATGGATGTTGACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp CCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGGGTGGCAGCGGTGACAGCATaGGCCACGCCCGCCGCCGTG +
Preference number: 4 (lower is better)
Translates to: PGPAGNSPGNRFECDWWVAAVTA*ATPAAV
Trigger: CACGGCGGCGGGCGTGGCGCATGCTGTCACCGCTGC...CACCCACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GCCATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGCGCAGGAAGGTGGGCTaGCGCAGGCGGCTGGCTCGC +
Preference number: 4 (lower is better)
Translates to: AISGLVGPPSPSQGADKERRKVG*RRRLAR
Trigger: GCGAGCCAGCCGCCTGCGCCAGCCCACCTTCCTGCG...CTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGATGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ATCCCCACCCTCCTGTGCCTGCAGCTGGCAGCTCCAGAAGCAAAGAAGGATGTGGCAGCGGTGACAGCATaGGCCACGCCCGCCGCCGTG +
Preference number: 4 (lower is better)
Translates to: IPTLLCLQLAAPEAKKDVAAVTA*ATPAAV
Trigger: CACGGCGGCGGGCGTGGCGCATGCTGTCACCGCTGC...CACATCCTTCTTTGCTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ATCCCCACCCTCCTGTGCCTGCAGCTGGCAGCTCCAGAAGCAAAGAAGGATGTGCCTGCGTGCCCACGCTaGCCGTGGCCGCGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: IPTLLCLQLAAPEAKKDVPACPR*PWPRPP
Trigger: AGGAGGACGCGGCCACGGGCAGCGTGGGCACGCAGG...CACATCCTTCTTTGCTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp AAGCAAAGAAGGATGTGCAAAATAATGGCGAGGGCCGCAGGGTCGGCAGGGGCCCCTGCGTGCCCACGCTaGCCGTGGCCGCGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: KQRRMCKIMARAAGSAGAPACPR*PWPRPP
Trigger: AGGAGGACGCGGCCACGGGCAGCGTGGGCACGCAGG...GGCCCCTGCCGACCCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GCCTTTCTGTGTCCAGTCACAGGCAGGGAGGTGACCCTCAGAGTCTCATGGTCCCCTGCGTGCCCACGCTaGCCGTGGCCGCGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: AFLCPVTGREVTLRVSWSPACPR*PWPRPP
Trigger: AGGAGGACGCGGCCACGGGCAGCGTGGGCACGCAGG...GGACCATGAGACTCTGAGGGTCACCTCCCTGCCTGTGACTGGACACAGAAAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp CCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGGGTGGCTGGCGCAGGCGGCTaGCTCGCACCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: PGPAGNSPGNRFECDWWVAGAGG*LAPPPP
Trigger: AGGTGGAGGTGGTGCGAGCCAGCCGCCTGCGCCAGC...CACCCACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp AATTCTGACATCCTCGAGTTCTGCAAGGAGCAGAGGACCCTGCAGGGAGGGGCCCGCAGGAAGGTGGGCTaGCGCAGGCGGCTGGCTCGC +
Preference number: 4 (lower is better)
Translates to: NSDILEFCKEQRTLQGGARRKVG*RRRLAR
Trigger: GCGAGCCAGCCGCCTGCGCCAGCCCACCTTCCTGCG...GGCCCCTCCCTGCAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTCAGAATT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGGCCGGGAGGAGTGAGGGAAGGGTGTCCTCAAATAGGGTTAGGTCTGGCTACCTTGCACAGACGGCCCTaGGTGCCCACGCTGCCCGTG +
Preference number: 4 (lower is better)
Translates to: GPGGVREGCPQIGLGLATLHRRP*VPTLPV
Trigger: CACGGGCAGCGTGGGCACGCAGGGCCGTCTGTGCAA...GGTAGCCAGACCTAACCCTATTTGAGGACACCCTTCCCTCACTCCTCCCGGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp AGGTGCCTGGCAGCCCAGGGACAGTGCGAATTGCCTCGGTGGCATCAGGGGCCCTTGCTCAGATTGCCCTaGCTGCAGGCAGCGGTGACA +
Preference number: 4 (lower is better)
Translates to: RCLAAQGQCELPRWHQGPLLRLP*LQAAVT
Trigger: TGTCACCGCTGCCTGCAGCCAGGGCAATCTGAGCAA...GGGCCCCTGATGCCACCGAGGCAATTCGCACTGTCCCTGGGCTGCCAGGCACCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp AATTCTGACATCCTCGAGTTCTGCAAGGAGCAGAGGACCCTGCAGGGAGGGGCCGCTGGCGCAGGCGGCTaGCTCGCACCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: NSDILEFCKEQRTLQGGAAGAGG*LAPPPP
Trigger: AGGTGGAGGTGGTGCGAGCCAGCCGCCTGCGCCAGC...GGCCCCTCCCTGCAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTCAGAATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp ACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGCTGGCGCAGGCGGCTaGCTCGCACCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: TAQGRQETAQETVLSVTGAGAGG*LAPPPP
Trigger: AGGTGGAGGTGGTGCGAGCCAGCCGCCTGCGCCAGC...ACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACGCTGGCGCAGGCGGCTaGCTCGCACCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHAGAGG*LAPPPP
Trigger: AGGTGGAGGTGGTGCGAGCCAGCCGCCTGCGCCAGC...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGCCGGCGAGGTGCGGTTaGACAGACGGCCCTGCGTGC +
Preference number: 4 (lower is better)
Translates to: GHLAWWPPNPTFPWTSAMPARCG*TDGPAC
Trigger: GCACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGG...CATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCGCAGCGGTGACAGCATaGGCCACGCCCGCCGCCGTG +
Preference number: 4 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSAAVTA*ATPAAV
Trigger: CACGGCGGCGGGCGTGGCGCATGCTGTCACCGCTGC...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp TCCCTGACCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTGGCTCCAGCGCACCACCTCCACCTaGACCGCTGCGTTGTACTTC +
Preference number: 4 (lower is better)
Translates to: SLTSPEPVGQSWVSGWLQRTTST*TAALYF
Trigger: GAAGTACAACGCAGCGGTGCAGGTGGAGGTGGTGCG...CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GGCTGGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGCGCAGGAAGGTGGGCTaGCGCAGGCGGCTGGCTCGC +
Preference number: 4 (lower is better)
Translates to: GWMGLCQYIYFTEPWGLQRRKVG*RRRLAR
Trigger: GCGAGCCAGCCGCCTGCGCCAGCCCACCTTCCTGCG...CTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAAAGCTGCGTAGCTGCTTaGTGCGCAGGAAGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQSCVAA*CAGRWA
Trigger: AGCCCACCTTCCTGCGCATCAAGCAGCTACGCAGCT...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp CCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGGGTGAGCTGCGTAGCTGCTTaGTGCGCAGGAAGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: PGPAGNSPGNRFECDWWVSCVAA*CAGRWA
Trigger: AGCCCACCTTCCTGCGCATCAAGCAGCTACGCAGCT...CACCCACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp GCCATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGAGCTGCGTAGCTGCTTaGTGCGCAGGAAGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: AISGLVGPPSPSQGADKESCVAA*CAGRWA
Trigger: AGCCCACCTTCCTGCGCATCAAGCAGCTACGCAGCT...CTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGATGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGTCCTCGTCGATGCCCATCTaGGCCCCCTCCCCGATCACA +
Preference number: 4 (lower is better)
Translates to: ISGLVGPPSPSQGADKESSSMPI*APSPIT
Trigger: TGTGATCGGGGAGGGGGCGCAGATGGGCATCGACGA...GGACTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CCA 90 bp ATCCCCACCCTCCTGTGCCTGCAGCTGGCAGCTCCAGAAGCAAAGAAGGATGTGGATGGCACGCTGCCGTaGGGCCAGGCCAGGAATCTT +
Preference number: 4 (lower is better)
Translates to: IPTLLCLQLAAPEAKKDVDGTLP*GQARNL
Trigger: AAGATTCCTGGCCTGGCCCCACGGCAGCGTGCCATC...CACATCCTTCTTTGCTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CCA 90 bp ACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGATGGCACGCTGCCGTaGGGCCAGGCCAGGAATCTT +
Preference number: 4 (lower is better)
Translates to: TAQGRQETAQETVLSVTGDGTLP*GQARNL
Trigger: AAGATTCCTGGCCTGGCCCCACGGCAGCGTGCCATC...ACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR TCA 90 bp AATTCTGACATCCTCGAGTTCTGCAAGGAGCAGAGGACCCTGCAGGGAGGGGCCCAGGGCCACCACGGATaGCAATGCTCCGAGCTTCAC +
Preference number: 4 (lower is better)
Translates to: NSDILEFCKEQRTLQGGAQGHHG*QCSELH
Trigger: GTGAAGCTCGGAGCATTGTCATCCGTGGTGGCCCTG...GGCCCCTCCCTGCAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTCAGAATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS-3UTR GCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCGCTGGCACTCGTCGATaGCCATCTGCGCCCCCTCCC +
Preference number: 4 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSAGTRR*PSAPPP
Trigger: GGGAGGGGGCGCAGATGGGCATCGACGAGTGCCAGC...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS-3UTR GCA 90 bp GATTTGCATGACAGTCTCCAAATGGAATGGAAGATTGGCTGTCCTCTGCGGCCAGCAGCGGTGACAGCATaGGCCACGCCCGCCGCCGTG +
Preference number: 4 (lower is better)
Translates to: DLHDSLQMEWKIGCPLRPAAVTA*ATPAAV
Trigger: CACGGCGGCGGGCGTGGCGCATGCTGTCACCGCTGC...TGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGTCCCGCACCACCTCCACCTaGACCGCTGCGTTGTACTTC +
Preference number: 4 (lower is better)
Translates to: ISGLVGPPSPSQGADKESRTTST*TAALYF
Trigger: GAAGTACAACGCAGCGGTGCAGGTGGAGGTGGTGCG...GGACTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp CCTGACATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCATTGCACAGACGGCCCTaGGTGCCCACGCTGCCCGTG +
Preference number: 4 (lower is better)
Translates to: PDMIGTHSWMQGKGKQGSLHRRP*VPTLPV
Trigger: CACGGGCAGCGTGGGCACGCAGGGCCGTCTGTGCAA...TGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACCCGGCGAGGTGCGGTTaGACAGACGGCCCTGCGTGC +
Preference number: 4 (lower is better)
Translates to: GSPVNLQIALCPSVMWGNPARCG*TDGPAC
Trigger: GCACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGG...GTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAATTGCTCAGATTGCCCTaGCTGCAGGCAGCGGTGACA +
Preference number: 4 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQLLRLP*LQAAVT
Trigger: TGTCACCGCTGCCTGCAGCCAGGGCAATCTGAGCAA...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp TATCAGTGGACACTAGGCAGGGGGCCTGACCAATACATCCCTAAATTCTGGATGCGCAGGAAGGTGGGCTaGCGCAGGCGGCTGGCTCGC +
Preference number: 4 (lower is better)
Translates to: YQWTLGRGPDQYIPKFWMRRKVG*RRRLAR
Trigger: GCGAGCCAGCCGCCTGCGCCAGCCCACCTTCCTGCG...CATCCAGAATTTAGGGATGTATTGGTCAGGCCCCCTGCCTAGTGTCCACTGATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGCGCACCACCTCCACCTaGACCGCTGCGTTGTACTTC +
Preference number: 4 (lower is better)
Translates to: GHLAWWPPNPTFPWTSAMRTTST*TAALYF
Trigger: GAAGTACAACGCAGCGGTGCAGGTGGAGGTGGTGCG...CATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAACCTGCGTGCCCACGCTaGCCGTGGCCGCGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: GWGCVSIFISQSRGVSSKPACPR*PWPRPP
Trigger: AGGAGGACGCGGCCACGGGCAGCGTGGGCACGCAGG...TTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGTGGGGCAACTTGCACAGACGGCCCTaGGTGCCCACGCTGCCCGTG +
Preference number: 4 (lower is better)
Translates to: GSPVNLQIALCPSVMWGNLHRRP*VPTLPV
Trigger: CACGGGCAGCGTGGGCACGCAGGGCCGTCTGTGCAA...GTTGCCCCACATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GATTTGCATGACAGTCTCCAAATGGAATGGAAGATTGGCTGTCCTCTGCGGCCACCGGCGAGGTGCGGTTaGACAGACGGCCCTGCGTGC +
Preference number: 4 (lower is better)
Translates to: DLHDSLQMEWKIGCPLRPPARCG*TDGPAC
Trigger: GCACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGG...TGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp CCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGGGTGCCTACTCGGAGTTCTTaGCCGAAGACGGTCTTCTCG +
Preference number: 4 (lower is better)
Translates to: PGPAGNSPGNRFECDWWVPTRSS*PKTVFS
Trigger: CGAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGG...CACCCACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GGCTGGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGGCATCGGGTCGGCTCTaGCAGATGGCACGCTGCCGT +
Preference number: 4 (lower is better)
Translates to: GWMGLCQYIYFTEPWGLQASGRL*QMARCR
Trigger: ACGGCAGCGTGCCATCTGCCAGAGCCGACCCGATGC...CTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CCA 90 bp CCAGGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTTTGCTCAGATTGCCCTaGCTGCAGGCAGCGGTGACA +
Preference number: 4 (lower is better)
Translates to: PGHLAWWPPNPTFPWTSALLRLP*LQAAVT
Trigger: TGTCACCGCTGCCTGCAGCCAGGGCAATCTGAGCAA...AGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAATTCTCCTTGAGCAGGTaGCCCACCTCGCGGAACTTA +
Preference number: 4 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQFSLSR*PTSRNL
Trigger: TAAGTTCCGCGAGGTGGGCCACCTGCTCAAGGAGAA...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GATTTGCATGACAGTCTCCAAATGGAATGGAAGATTGGCTGTCCTCTGCGGCCAGCTGGCGCAGGCGGCTaGCTCGCACCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: DLHDSLQMEWKIGCPLRPAGAGG*LAPPPP
Trigger: AGGTGGAGGTGGTGCGAGCCAGCCGCCTGCGCCAGC...TGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTCGCAGGAAGGTGGGCTaGCGCAGGCGGCTGGCTCGC +
Preference number: 4 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFRRKVG*RRRLAR
Trigger: GCGAGCCAGCCGCCTGCGCCAGCCCACCTTCCTGCG...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp GATGTCAGTTCTCTGGCATCAGGATCACAGAAGAAGGACAAAACCCAAGGTACTGGCTGCAGGCAGCGGTaGCAGCATGCGCCACGCCCG +
Preference number: 4 (lower is better)
Translates to: DVSSLASGSQKKDKTQGTGCRQR*QHAPRP
Trigger: CGGGCGTGGCGCATGCTGTCACCGCTGCCTGCAGCC...AGTACCTTGGGTTTTGTCCTTCTTCTGTGATCCTGATGCCAGAGAACTGACATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGTCCACTCCTCGGAGTTCTTaGCCGAAGACGGTCTTCTCG +
Preference number: 4 (lower is better)
Translates to: ISGLVGPPSPSQGADKESTPRSS*PKTVFS
Trigger: CGAGAAGACCGTCTTCGGGCAAGAACTCCGAGGAGT...GGACTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023015.15
CDS-3UTR GCA 90 bp TCCCTGACCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTGGCTCCAGCCTCCAGAACCTTTCTaGCCGCCTCATTGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: SLTSPEPVGQSWVSGWLQPPEPF*PPHCCE
Trigger: TTCACAACAATGAGGCGGGCAGAAAGGTTCTGGAGG...CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp CCAGGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTCCTACTCGGAGTTCTTaGCCGAAGACGGTCTTCTCG +
Preference number: 4 (lower is better)
Translates to: PGHLAWWPPNPTFPWTSAPTRSS*PKTVFS
Trigger: CGAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGG...AGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GCCTTTCTGTGTCCAGTCACAGGCAGGGAGGTGACCCTCAGAGTCTCATGGTCCTTCTCCTTGAGCAGGTaGCCCACCTCGCGGAACTTA +
Preference number: 4 (lower is better)
Translates to: AFLCPVTGREVTLRVSWSFSLSR*PTSRNL
Trigger: TAAGTTCCGCGAGGTGGGCCACCTGCTCAAGGAGAA...GGACCATGAGACTCTGAGGGTCACCTCCCTGCCTGTGACTGGACACAGAAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp ATCCCCACCCTCCTGTGCCTGCAGCTGGCAGCTCCAGAAGCAAAGAAGGATGTGGAATCTTGTTGCAGATaGTGTTGGCTCCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: IPTLLCLQLAAPEAKKDVESCCR*CWLPGP
Trigger: TGGCCCTGGGAGCCAACATCATCTGCAACAAGATTC...CACATCCTTCTTTGCTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAATCCAGCAAGTTTTGGTaGTACAGGAGCCTGACACAC +
Preference number: 4 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQSSKFW*YRSLTH
Trigger: GTGTGTCAGGCTCCTGTACCACCAAAACTTGCTGGA...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp AATTCTGACATCCTCGAGTTCTGCAAGGAGCAGAGGACCCTGCAGGGAGGGGCCCCTCCAGAACCTTTCTaGCCGCCTCATTGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: NSDILEFCKEQRTLQGGAPPEPF*PPHCCE
Trigger: TTCACAACAATGAGGCGGGCAGAAAGGTTCTGGAGG...GGCCCCTCCCTGCAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTCAGAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCCTGCGTGCCCACGCTaGCCGTGGCCGCGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPPACPR*PWPRPP
Trigger: AGGAGGACGCGGCCACGGGCAGCGTGGGCACGCAGG...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GATGTCAGTTCTCTGGCATCAGGATCACAGAAGAAGGACAAAACCCAAGGTACTTTGCACAGACGGCCCTaGGTGCCCACGCTGCCCGTG +
Preference number: 4 (lower is better)
Translates to: DVSSLASGSQKKDKTQGTLHRRP*VPTLPV
Trigger: CACGGGCAGCGTGGGCACGCAGGGCCGTCTGTGCAA...AGTACCTTGGGTTTTGTCCTTCTTCTGTGATCCTGATGCCAGAGAACTGACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp ATCCCCACCCTCCTGTGCCTGCAGCTGGCAGCTCCAGAAGCAAAGAAGGATGTGTCCAGCAAGTTTTGGTaGTACAGGAGCCTGACACAC +
Preference number: 4 (lower is better)
Translates to: IPTLLCLQLAAPEAKKDVSSKFW*YRSLTH
Trigger: GTGTGTCAGGCTCCTGTACCACCAAAACTTGCTGGA...CACATCCTTCTTTGCTTCTGGAGCTGCCAGCTGCAGGCACAGGAGGGTGGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACTCCAGCAAGTTTTGGTaGTACAGGAGCCTGACACAC +
Preference number: 4 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHSSKFW*YRSLTH
Trigger: GTGTGTCAGGCTCCTGTACCACCAAAACTTGCTGGA...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp ATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGTCCTCCAGCAAGTTTTGGTaGTACAGGAGCCTGACACAC +
Preference number: 4 (lower is better)
Translates to: ISGLVGPPSPSQGADKESSSKFW*YRSLTH
Trigger: GTGTGTCAGGCTCCTGTACCACCAAAACTTGCTGGA...GGACTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGCCTCCAGAACCTTTCTaGCCGCCTCATTGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: GHLAWWPPNPTFPWTSAMPPEPF*PPHCCE
Trigger: TTCACAACAATGAGGCGGGCAGAAAGGTTCTGGAGG...CATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAAAATTTGCAGTTACACTaGCACACCTTGGTGTACTGG +
Preference number: 4 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQNLQLH*HTLVYW
Trigger: CCAGTACACCAAGGTGTGGCAGTGTAACTGCAAATT...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp GGGCCGGGAGGAGTGAGGGAAGGGTGTCCTCAAATAGGGTTAGGTCTGGCTACCAATTTGCAGTTACACTaGCACACCTTGGTGTACTGG +
Preference number: 4 (lower is better)
Translates to: GPGGVREGCPQIGLGLATNLQLH*HTLVYW
Trigger: CCAGTACACCAAGGTGTGGCAGTGTAACTGCAAATT...GGTAGCCAGACCTAACCCTATTTGAGGACACCCTTCCCTCACTCCTCCCGGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp CCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGGGTGAATTTGCAGTTACACTaGCACACCTTGGTGTACTGG +
Preference number: 4 (lower is better)
Translates to: PGPAGNSPGNRFECDWWVNLQLH*HTLVYW
Trigger: CCAGTACACCAAGGTGTGGCAGTGTAACTGCAAATT...CACCCACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CAA 72 bp GGGTGCAGCCTCCCATCACCCTGGCAACTTCCAGAGTaGGGCTGGATGGGGCTGTGTCAGTATATTTATTTC +
Preference number: 4 (lower is better)
Translates to: GCSLPSPWQLPE*GWMGLCQYIYF
Trigger: GAAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGTGATGGGAGGCTGCACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CAA 72 bp ATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTaGTGGAGGAAAGGGTGGGATATGCCCAGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: IISPGSFLPCHV*WRKGWDMPRPE
Trigger: CTCAGGCCTGGGCATATCCCACCCTTTCCTCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTCGCACCACCTCCACCTaGACCGCTGCGTTGTACTTC +
Preference number: 4 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFRTTST*TAALYF
Trigger: GAAGTACAACGCAGCGGTGCAGGTGGAGGTGGTGCG...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp ATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGTCCAATTTGCAGTTACACTaGCACACCTTGGTGTACTGG +
Preference number: 4 (lower is better)
Translates to: ISGLVGPPSPSQGADKESNLQLH*HTLVYW
Trigger: CCAGTACACCAAGGTGTGGCAGTGTAACTGCAAATT...GGACTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp TCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTGGGTACCAGACCACCGATGGCACGCTGCCGTaGGGCCAGGCCAGGAATCTT +
Preference number: 4 (lower is better)
Translates to: SLSQREVKGFVSIGYQTTDGTLP*GQARNL
Trigger: AAGATTCCTGGCCTGGCCCCACGGCAGCGTGCCATC...GGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CCA 90 bp GATTTGCATGACAGTCTCCAAATGGAATGGAAGATTGGCTGTCCTCTGCGGCCATTGCTCAGATTGCCCTaGCTGCAGGCAGCGGTGACA +
Preference number: 4 (lower is better)
Translates to: DLHDSLQMEWKIGCPLRPLLRLP*LQAAVT
Trigger: TGTCACCGCTGCCTGCAGCCAGGGCAATCTGAGCAA...TGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp GATGTCAGTTCTCTGGCATCAGGATCACAGAAGAAGGACAAAACCCAAGGTACTAGCTGCGTAGCTGCTTaGTGCGCAGGAAGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: DVSSLASGSQKKDKTQGTSCVAA*CAGRWA
Trigger: AGCCCACCTTCCTGCGCATCAAGCAGCTACGCAGCT...AGTACCTTGGGTTTTGTCCTTCTTCTGTGATCCTGATGCCAGAGAACTGACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp CAGAGTCTCATGGTCCCTTTGTGGTTCACTTTCCCAAAGAGAAGTAAAGGGATTTCGTCGATGCCCATCTaGGCCCCCTCCCCGATCACA +
Preference number: 4 (lower is better)
Translates to: QSLMVPLWFTFPKRSKGISSMPI*APSPIT
Trigger: TGTGATCGGGGAGGGGGCGCAGATGGGCATCGACGA...AATCCCTTTACTTCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAGACTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR GCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCCCTCCAGAACCTTTCTaGCCGCCTCATTGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSPPEPF*PPHCCE
Trigger: TTCACAACAATGAGGCGGGCAGAAAGGTTCTGGAGG...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTGCATCGGGTCGGCTCTaGCAGATGGCACGCTGCCGT +
Preference number: 4 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPASGRL*QMARCR
Trigger: ACGGCAGCGTGCCATCTGCCAGAGCCGACCCGATGC...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CCA 90 bp ATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCTTCCTCCAGCAAGTTTTGGTaGTACAGGAGCCTGACACAC +
Preference number: 4 (lower is better)
Translates to: MIGTHSWMQGKGKQGSPSSSKFW*YRSLTH
Trigger: GTGTGTCAGGCTCCTGTACCACCAAAACTTGCTGGA...GGAAGGTGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp TATCAGTGGACACTAGGCAGGGGGCCTGACCAATACATCCCTAAATTCTGGATGGAATCTTGTTGCAGATaGTGTTGGCTCCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: YQWTLGRGPDQYIPKFWMESCCR*CWLPGP
Trigger: TGGCCCTGGGAGCCAACATCATCTGCAACAAGATTC...CATCCAGAATTTAGGGATGTATTGGTCAGGCCCCCTGCCTAGTGTCCACTGATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS-3UTR GCA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTTCGTCGATGCCCATCTaGGCCCCCTCCCCGATCACA +
Preference number: 4 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPSSMPI*APSPIT
Trigger: TGTGATCGGGGAGGGGGCGCAGATGGGCATCGACGA...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CCA 90 bp ACCCTGGCAACTTCCAGAGTTGGGCTGGATGGGGCTGTGTCAGTATATTTATTTTTCTCCTTGAGCAGGTaGCCCACCTCGCGGAACTTA +
Preference number: 4 (lower is better)
Translates to: TLATSRVGLDGAVSVYLFFSLSR*PTSRNL
Trigger: TAAGTTCCGCGAGGTGGGCCACCTGCTCAAGGAGAA...AAATAAATATACTGACACAGCCCCATCCAGCCCAACTCTGGAAGTTGCCAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR TCA 90 bp GGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAAGAATCTTGTTGCAGATaGTGTTGGCTCCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: GWGCVSIFISQSRGVSSKESCCR*CWLPGP
Trigger: TGGCCCTGGGAGCCAACATCATCTGCAACAAGATTC...TTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR GCA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGACCTCCAGAACCTTTCTaGCCGCCTCATTGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGPPEPF*PPHCCE
Trigger: TTCACAACAATGAGGCGGGCAGAAAGGTTCTGGAGG...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp CCTGACATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCAAATTTGCAGTTACACTaGCACACCTTGGTGTACTGG +
Preference number: 4 (lower is better)
Translates to: PDMIGTHSWMQGKGKQGSNLQLH*HTLVYW
Trigger: CCAGTACACCAAGGTGTGGCAGTGTAACTGCAAATT...TGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp TCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTGGGTACCAGACCACCCCTACTCGGAGTTCTTaGCCGAAGACGGTCTTCTCG +
Preference number: 4 (lower is better)
Translates to: SLSQREVKGFVSIGYQTTPTRSS*PKTVFS
Trigger: CGAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGG...GGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp CAGAGTCTCATGGTCCCTTTGTGGTTCACTTTCCCAAAGAGAAGTAAAGGGATTTTGCTCAGATTGCCCTaGCTGCAGGCAGCGGTGACA +
Preference number: 4 (lower is better)
Translates to: QSLMVPLWFTFPKRSKGILLRLP*LQAAVT
Trigger: TGTCACCGCTGCCTGCAGCCAGGGCAATCTGAGCAA...AATCCCTTTACTTCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAGACTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp TCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTGGGTACCAGACCACCTTCTCCTTGAGCAGGTaGCCCACCTCGCGGAACTTA +
Preference number: 4 (lower is better)
Translates to: SLSQREVKGFVSIGYQTTFSLSR*PTSRNL
Trigger: TAAGTTCCGCGAGGTGGGCCACCTGCTCAAGGAGAA...GGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
3UTR CAA 72 bp AGGCATGCCTGGAGCCTGACACAAGGGACATTTGATTaGCATGACAGTCTCCAAATGGAATGGAAGATTGGC +
Preference number: 4 (lower is better)
Translates to: RHAWSLTQGTFD*HDSLQMEWKIG
Trigger: GCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATCAAATGTCCCTTGTGTCAGGCTCCAGGCATGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR GCA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCCTACTCGGAGTTCTTaGCCGAAGACGGTCTTCTCG +
Preference number: 4 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPPTRSS*PKTVFS
Trigger: CGAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGG...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CCA 90 bp TCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTGGGTACCAGACCACCCTAGGTAACTGCCGCTaGACAGAAGGAGAAAGATCT +
Preference number: 4 (lower is better)
Translates to: SLSQREVKGFVSIGYQTTLGNCR*TEGERS
Trigger: AGATCTTTCTCCTTCTGTCCAGCGGCAGTTACCTAG...GGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229191.2
CDS-3UTR CAA 90 bp CCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGGGTGCCCGGCGAGGTGCGGTaGCACAGACGGCCCTGCGTG +
Preference number: 5 (lower is better)
Translates to: PGPAGNSPGNRFECDWWVPGEVR*HRRPCV
Trigger: CACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGGG...CACCCACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp AATTCTGACATCCTCGAGTTCTGCAAGGAGCAGAGGACCCTGCAGGGAGGGGCCCCCGGCGAGGTGCGGTaGCACAGACGGCCCTGCGTG +
Preference number: 5 (lower is better)
Translates to: NSDILEFCKEQRTLQGGAPGEVR*HRRPCV
Trigger: CACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGGG...GGCCCCTCCCTGCAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTCAGAATT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp AAGCAAAGAAGGATGTGCAAAATAATGGCGAGGGCCGCAGGGTCGGCAGGGGCCCCCGGCGAGGTGCGGTaGCACAGACGGCCCTGCGTG +
Preference number: 5 (lower is better)
Translates to: KQRRMCKIMARAAGSAGAPGEVR*HRRPCV
Trigger: CACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGGG...GGCCCCTGCCGACCCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp AAGGATGTGCAAAATAATGGCGAGGGCCGCAGGGTCGGCAGGGGCCGAGCGCGCGCGTTGTACTTCTCCTaGAGCAGGTGGCCCACCTCG +
Preference number: 5 (lower is better)
Translates to: KDVQNNGEGRRVGRGRARALYFS*SRWPTS
Trigger: CGAGGTGGGCCACCTGCTCAAGGAGAAGTACAACGC...GCGCGCTCGGCCCCTGCCGACCCTGCGGCCCTCGCCATTATTTTGCACATCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp CTGGCAGCTCCAGAAGCAAAGAAGGATGTGCAAAATAATGGCGAGGGCCGCAGGCCCGGCGAGGTGCGGTaGCACAGACGGCCCTGCGTG +
Preference number: 5 (lower is better)
Translates to: LAAPEAKKDVQNNGEGRRPGEVR*HRRPCV
Trigger: CACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGGG...CCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTTCTGGAGCTGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp TCCCTGACCTCTCCTGAACCTGTGGGGCAGTCCTGGGTGTCAGGTTGGCTCCAGGCGTTGTACTTCTCCTaGAGCAGGTGGCCCACCTCG +
Preference number: 5 (lower is better)
Translates to: SLTSPEPVGQSWVSGWLQALYFS*SRWPTS
Trigger: CGAGGTGGGCCACCTGCTCAAGGAGAAGTACAACGC...CTGGAGCCAACCTGACACCCAGGACTGCCCCACAGGTTCAGGAGAGGTCAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp TGTCAACATCCATCCACACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGGCGTTGTACTTCTCCTaGAGCAGGTGGCCCACCTCG +
Preference number: 5 (lower is better)
Translates to: CQHPSTLPRAGRKQPRKPALYFS*SRWPTS
Trigger: CGAGGTGGGCCACCTGCTCAAGGAGAAGTACAACGC...CGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGTGTGGATGGATGTTGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp AAGCAAAGAAGGATGTGCAAAATAATGGCGAGGGCCGCAGGGTCGGCAGGGGCCCCACAATTGCTCAGATaGCCCTGGCTGCAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: KQRRMCKIMARAAGSAGAPQLLR*PWLQAA
Trigger: CGCTGCCTGCAGCCAGGGCAATCTGAGCAATTGTGG...GGCCCCTGCCGACCCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp ATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGTCCCCACAATTGCTCAGATaGCCCTGGCTGCAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: ISGLVGPPSPSQGADKESPQLLR*PWLQAA
Trigger: CGCTGCCTGCAGCCAGGGCAATCTGAGCAATTGTGG...GGACTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp ACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTCCACAATTGCTCAGATaGCCCTGGCTGCAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: TAQGRQETAQETVLSVTGPQLLR*PWLQAA
Trigger: CGCTGCCTGCAGCCAGGGCAATCTGAGCAATTGTGG...ACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GCCATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGCTGGTTGTAGTAGCCTaGCTTCTCCCGGTCACAGCC +
Preference number: 5 (lower is better)
Translates to: AISGLVGPPSPSQGADKELVVVA*LLPVTA
Trigger: GGCTGTGACCGGGAGAAGCAAGGCTACTACAACCAG...CTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp ACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTGCGTTGTACTTCTCCTaGAGCAGGTGGCCCACCTCG +
Preference number: 5 (lower is better)
Translates to: TAQGRQETAQETVLSVTGALYFS*SRWPTS
Trigger: CGAGGTGGGCCACCTGCTCAAGGAGAAGTACAACGC...ACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GCCATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGACCTGCACCGCTGCGTaGTACTTCTCCTTGAGCAGG +
Preference number: 5 (lower is better)
Translates to: AISGLVGPPSPSQGADKETCTAA*YFSLSR
Trigger: CCTGCTCAAGGAGAAGTACAACGCAGCGGTGCAGGT...CTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGACCCGGCGAGGTGCGGTaGCACAGACGGCCCTGCGTG +
Preference number: 5 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGPGEVR*HRRPCV
Trigger: CACGCAGGGCCGTCTGTGCAACCGCACCTCGCCGGG...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GCCATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGCCCTACTCGGAGTTCTaGCCCGAAGACGGTCTTCTC +
Preference number: 5 (lower is better)
Translates to: AISGLVGPPSPSQGADKEPYSEF*PEDGLL
Trigger: GAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGGG...CTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp ACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTTTGTTGCAGATGATGTaGGCTCCCAGGGCCACCACG +
Preference number: 5 (lower is better)
Translates to: TAQGRQETAQETVLSVTGLLQMM*APRATT
Trigger: CGTGGTGGCCCTGGGAGCCAACATCATCTGCAACAA...ACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CAA 90 bp AATTCTGACATCCTCGAGTTCTGCAAGGAGCAGAGGACCCTGCAGGGAGGGGCCCTGGTTGTAGTAGCCTaGCTTCTCCCGGTCACAGCC +
Preference number: 5 (lower is better)
Translates to: NSDILEFCKEQRTLQGGALVVVA*LLPVTA
Trigger: GGCTGTGACCGGGAGAAGCAAGGCTACTACAACCAG...GGCCCCTCCCTGCAGGGTCCTCTGCTCCTTGCAGAACTCGAGGATGTCAGAATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GGGCCGGGAGGAGTGAGGGAAGGGTGTCCTCAAATAGGGTTAGGTCTGGCTACCCGCCTGGCGTTCTTTTaGATCTCACGGGCATCCACA +
Preference number: 5 (lower is better)
Translates to: GPGGVREGCPQIGLGLATRLAFF*ISRAST
Trigger: TGTGGATGCCCGTGAGATCAAAAAGAACGCCAGGCG...GGTAGCCAGACCTAACCCTATTTGAGGACACCCTTCCCTCACTCCTCCCGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAACGCCTGGCGTTCTTTTaGATCTCACGGGCATCCACA +
Preference number: 5 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQRLAFF*ISRAST
Trigger: TGTGGATGCCCGTGAGATCAAAAAGAACGCCAGGCG...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp ACTGCCCAGGGCCGGCAGGAAACAGCCCAGGAAACCGTTTTGAGTGTGACTGGTACCTGCACCGCTGCGTaGTACTTCTCCTTGAGCAGG +
Preference number: 5 (lower is better)
Translates to: TAQGRQETAQETVLSVTGTCTAA*YFSLSR
Trigger: CCTGCTCAAGGAGAAGTACAACGCAGCGGTGCAGGT...ACCAGTCACACTCAAAACGGTTTCCTGGGCTGTTTCCTGCCGGCCCTGGGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GGGCCGGGAGGAGTGAGGGAAGGGTGTCCTCAAATAGGGTTAGGTCTGGCTACCCTGCACGTGTTGCACTaGACGAAGCAACACCAGTGG +
Preference number: 5 (lower is better)
Translates to: GPGGVREGCPQIGLGLATLHVLH*TKQHQW
Trigger: CCACTGGTGTTGCTTCGTCAAGTGCAACACGTGCAG...GGTAGCCAGACCTAACCCTATTTGAGGACACCCTTCCCTCACTCCTCCCGGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GCCATCTCAGGCCTTGTAGGGCCACCAAGCCCCTCCCAAGGTGCTGATAAGGAGCTGCACGTGTTGCACTaGACGAAGCAACACCAGTGG +
Preference number: 5 (lower is better)
Translates to: AISGLVGPPSPSQGADKELHVLH*TKQHQW
Trigger: CCACTGGTGTTGCTTCGTCAAGTGCAACACGTGCAG...CTCCTTATCAGCACCTTGGGAGGGGCTTGGTGGCCCTACAAGGCCTGAGATGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GCCTTTCTGTGTCCAGTCACAGGCAGGGAGGTGACCCTCAGAGTCTCATGGTCCCCCTACTCGGAGTTCTaGCCCGAAGACGGTCTTCTC +
Preference number: 5 (lower is better)
Translates to: AFLCPVTGREVTLRVSWSPYSEF*PEDGLL
Trigger: GAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGGG...GGACCATGAGACTCTGAGGGTCACCTCCCTGCCTGTGACTGGACACAGAAAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GGACAGCAGCTGAAGCCATCCCCCATCCCCTCCGGTACCCAGTGTAGGTCACAAGCCAGGCCAGGAATCTaGTTGCAGATGATGTTGGCT +
Preference number: 5 (lower is better)
Translates to: GQQLKPSPIPSGTQCRSQARPGI*LQMMLA
Trigger: AGCCAACATCATCTGCAACAAGATTCCTGGCCTGGC...TTGTGACCTACACTGGGTACCGGAGGGGATGGGGGATGGCTTCAGCTGCTGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS-3UTR CAA 90 bp GGAACACAGCCCATCAGAAGTAGGGCACTTCAAGGACATGTGGTGCCCGGCCACCGCCTGGCGTTCTTTTaGATCTCACGGGCATCCACA +
Preference number: 5 (lower is better)
Translates to: GTQPIRSRALQGHVVPGHRLAFF*ISRAST
Trigger: TGTGGATGCCCGTGAGATCAAAAAGAACGCCAGGCG...GTGGCCGGGCACCACATGTCCTTGAAGTGCCCTACTTCTGATGGGCTGTGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp CCAGGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTCTGCACGTGTTGCACTaGACGAAGCAACACCAGTGG +
Preference number: 5 (lower is better)
Translates to: PGHLAWWPPNPTFPWTSALHVLH*TKQHQW
Trigger: CCACTGGTGTTGCTTCGTCAAGTGCAACACGTGCAG...AGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GGCCACCTGGCTTGGTGGCCACCAAACCCCACATTTCCATGGACTTCTGCTATGCCCTACTCGGAGTTCTaGCCCGAAGACGGTCTTCTC +
Preference number: 5 (lower is better)
Translates to: GHLAWWPPNPTFPWTSAMPYSEF*PEDGLL
Trigger: GAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGGG...CATAGCAGAAGTCCATGGAAATGTGGGGTTTGGTGGCCACCAAGCCAGGTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GGCTGGATGGGGCTGTGTCAGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGCCACAATTGCTCAGATaGCCCTGGCTGCAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: GWMGLCQYIYFTEPWGLQPQLLR*PWLQAA
Trigger: CGCTGCCTGCAGCCAGGGCAATCTGAGCAATTGTGG...CTGGAGACCCCACGGCTCTGTGAAATAAATATACTGACACAGCCCCATCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp CCTGACATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCACCACAATTGCTCAGATaGCCCTGGCTGCAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: PDMIGTHSWMQGKGKQGSPQLLR*PWLQAA
Trigger: CGCTGCCTGCAGCCAGGGCAATCTGAGCAATTGTGG...TGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp CTGGCAGCTCCAGAAGCAAAGAAGGATGTGCAAAATAATGGCGAGGGCCGCAGGCTGCACGTGTTGCACTaGACGAAGCAACACCAGTGG +
Preference number: 5 (lower is better)
Translates to: LAAPEAKKDVQNNGEGRRLHVLH*TKQHQW
Trigger: CCACTGGTGTTGCTTCGTCAAGTGCAACACGTGCAG...CCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTTCTGGAGCTGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp CTGGCAGCTCCAGAAGCAAAGAAGGATGTGCAAAATAATGGCGAGGGCCGCAGGAGGCCAGGAATCTTGTaGCAGATGATGTTGGCTCCC +
Preference number: 5 (lower is better)
Translates to: LAAPEAKKDVQNNGEGRRRPGIL*QMMLAP
Trigger: GGGAGCCAACATCATCTGCAACAAGATTCCTGGCCT...CCTGCGGCCCTCGCCATTATTTTGCACATCCTTCTTTGCTTCTGGAGCTGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS-3UTR CAA 90 bp AGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCTGTCCATCTGTCATGCTGGTTGTAGTAGCCTaGCTTCTCCCGGTCACAGCC +
Preference number: 5 (lower is better)
Translates to: RAVGSPVNLQIALCPSVMLVVVA*LLPVTA
Trigger: GGCTGTGACCGGGAGAAGCAAGGCTACTACAACCAG...CATGACAGATGGACAGAGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GATTTGCATGACAGTCTCCAAATGGAATGGAAGATTGGCTGTCCTCTGCGGCCAGCGTTGTACTTCTCCTaGAGCAGGTGGCCCACCTCG +
Preference number: 5 (lower is better)
Translates to: DLHDSLQMEWKIGCPLRPALYFS*SRWPTS
Trigger: CGAGGTGGGCCACCTGCTCAAGGAGAAGTACAACGC...TGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGATTGTTGCAGATGATGTaGGCTCCCAGGGCCACCACG +
Preference number: 5 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGLLQMM*APRATT
Trigger: CGTGGTGGCCCTGGGAGCCAACATCATCTGCAACAA...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS-3UTR CAA 90 bp CCTGACATGATAGGGACACACAGCTGGATGCAAGGCAAGGGCAAACAAGGGTCAAGGCCAGGAATCTTGTaGCAGATGATGTTGGCTCCC +
Preference number: 5 (lower is better)
Translates to: PDMIGTHSWMQGKGKQGSRPGIL*QMMLAP
Trigger: GGGAGCCAACATCATCTGCAACAAGATTCCTGGCCT...TGACCCTTGTTTGCCCTTGCCTTGCATCCAGCTGTGTGTCCCTATCATGTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS-3UTR CAA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGACTGGTTGTAGTAGCCTaGCTTCTCCCGGTCACAGCC +
Preference number: 5 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGLVVVA*LLPVTA
Trigger: GGCTGTGACCGGGAGAAGCAAGGCTACTACAACCAG...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp TGGGCAGTTGTATTATCAGCCCTGGCAGTTTCTTACCCTGCCATGTGTTGTGGAACCTGCACCGCTGCGTaGTACTTCTCCTTGAGCAGG +
Preference number: 5 (lower is better)
Translates to: WAVVLSALAVSYPAMCCGTCTAA*YFSLSR
Trigger: CCTGCTCAAGGAGAAGTACAACGCAGCGGTGCAGGT...TCCACAACACATGGCAGGGTAAGAAACTGCCAGGGCTGATAATACAACTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp GATTTGCATGACAGTCTCCAAATGGAATGGAAGATTGGCTGTCCTCTGCGGCCACCCTACTCGGAGTTCTaGCCCGAAGACGGTCTTCTC +
Preference number: 5 (lower is better)
Translates to: DLHDSLQMEWKIGCPLRPPYSEF*PEDGLL
Trigger: GAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGGG...TGGCCGCAGAGGACAGCCAATCTTCCATTCCATTTGGAGACTGTCATGCAAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp TCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTGGGTACCAGACCACCCTGGTTGTAGTAGCCTaGCTTCTCCCGGTCACAGCC +
Preference number: 5 (lower is better)
Translates to: SLSQREVKGFVSIGYQTTLVVVA*LLPVTA
Trigger: GGCTGTGACCGGGAGAAGCAAGGCTACTACAACCAG...GGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp CAGAGTCTCATGGTCCCTTTGTGGTTCACTTTCCCAAAGAGAAGTAAAGGGATTGACTCCTCGGAGTTCTaGCCCGAAGACGGTCTTCTC +
Preference number: 5 (lower is better)
Translates to: QSLMVPLWFTFPKRSKGIDSSEF*PEDGLL
Trigger: GAGAAGACCGTCTTCGGGCAAGAACTCCGAGGAGTC...AATCCCTTTACTTCTCTTTGGGAAAGTGAACCACAAAGGGACCATGAGACTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023015.15
CDS-3UTR CAA 90 bp TCACTTTCCCAAAGAGAAGTAAAGGGATTTGTCTCCATTGGGTACCAGACCACCCGCCTGGCGTTCTTTTaGATCTCACGGGCATCCACA +
Preference number: 5 (lower is better)
Translates to: SLSQREVKGFVSIGYQTTRLAFF*ISRAST
Trigger: TGTGGATGCCCGTGAGATCAAAAAGAACGCCAGGCG...GGTGGTCTGGTACCCAATGGAGACAAATCCCTTTACTTCTCTTTGGGAAAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTACCTGCACCGCTGCGTaGTACTTCTCCTTGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPTCTAA*YFSLSR
Trigger: CCTGCTCAAGGAGAAGTACAACGCAGCGGTGCAGGT...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS-3UTR CAA 90 bp AGTATATTTATTTCACAGAGCCGTGGGGTCTCCAGTAAATCTTCAGATTGCCCTCTGCACGTGTTGCACTaGACGAAGCAACACCAGTGG +
Preference number: 5 (lower is better)
Translates to: SIFISQSRGVSSKSSDCPLHVLH*TKQHQW
Trigger: CCACTGGTGTTGCTTCGTCAAGTGCAACACGTGCAG...AGGGCAATCTGAAGATTTACTGGAGACCCCACGGCTCTGTGAAATAAATATACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS CCA 72 bp CCCTCCCCGATCACAATGATGGCATCGGGTCGGCTCTaGCAGATGGCACGCTGCCGTGGGGCCAGGCCAGGA +
Preference number: 6 (lower is better)
Translates to: PSPITMMASGRL*QMARCRGARPG
Trigger: TCCTGGCCTGGCCCCACGGCAGCGTGCCATCTGCCAGAGCCGACCCGATGCCATCATTGTGATCGGGGAGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS GCA 72 bp GTGAAGGCAGCCTCTCGACTCCCTACTCGGAGTTCTTaGCCGAAGACGGTCTTCTCGCCCAGGGCGGAGCAG +
Preference number: 6 (lower is better)
Translates to: VKAASRLPTRSS*PKTVFSPRAEQ
Trigger: CTGCTCCGCCCTGGGCGAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGGGAGTCGAGAGGCTGCCTTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS CCA 72 bp TTCTCCCGGTCACAGCCACAATTGCTCAGATTGCCCTaGCTGCAGGCAGCGGTGACAGCATGCGCCACGCCC +
Preference number: 6 (lower is better)
Translates to: FSRSQPQLLRLP*LQAAVTACATP
Trigger: GGGCGTGGCGCATGCTGTCACCGCTGCCTGCAGCCAGGGCAATCTGAGCAATTGTGGCTGTGACCGGGAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS CAA 72 bp CAGATGGCACGCTGCCGTGGGGCCAGGCCAGGAATCTaGTTGCAGATGATGTTGGCTCCCAGGGCCACCACG +
Preference number: 6 (lower is better)
Translates to: QMARCRGARPGI*LQMMLAPRATT
Trigger: CGTGGTGGCCCTGGGAGCCAACATCATCTGCAACAAGATTCCTGGCCTGGCCCCACGGCAGCGTGCCATCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS CAA 72 bp GGTGAAGGCAGCCTCTCGACTCCCTACTCGGAGTTCTaGCCCGAAGACGGTCTTCTCGCCCAGGGCGGAGCA +
Preference number: 6 (lower is better)
Translates to: GEGSLSTPYSEF*PEDGLLAQGGA
Trigger: TGCTCCGCCCTGGGCGAGAAGACCGTCTTCGGGCAAGAACTCCGAGTAGGGAGTCGAGAGGCTGCCTTCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2
CDS CAA 90 bp GCACGCTGCCGTGGGGCCAGGCCAGGAATCTTGTTGCAGATGATGTaGGCTCCCAGGGCCACCACGGATGACAATGCTCCGAGCTTCACG +
Preference number: 6 (lower is better)
Translates to: ARCRGARPGILLQMM*APRATTDDNAPSFT
Trigger: CGTGAAGCTCGGAGCATTGTCATCCGTGGTGGCCCTGGGAGCCAACATCATCTGCAACAAGATTCCTGGCCTGGCCCCACGGCAGCGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS GCA 72 bp ATAGGTGAAGGCAGCCTCTCGACTCCTCGGAGTTCTTaGCCGAAGACGGTCTTCTCGCCCAGGGCGGAGCAG +
Preference number: 6 (lower is better)
Translates to: IGEGSLSTPRSS*PKTVFSPRAEQ
Trigger: CTGCTCCGCCCTGGGCGAGAAGACCGTCTTCGGGCAAGAACTCCGAGGAGTCGAGAGGCTGCCTTCACCTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023015.15
CDS CAA 72 bp ATGGCACGCTGCCGTGGGGCCAGGCCAGGAATCTTGTaGCAGATGATGTTGGCTCCCAGGGCCACCACGGAT +
Preference number: 6 (lower is better)
Translates to: MARCRGARPGIL*QMMLAPRATTD
Trigger: ATCCGTGGTGGCCCTGGGAGCCAACATCATCTGCAACAAGATTCCTGGCCTGGCCCCACGGCAGCGTGCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000229191.2
CDS CAA 72 bp CGTGGGGCCAGGCCAGGAATCTTGTTGCAGATGATGTaGGCTCCCAGGGCCACCACGGATGACAATGCTCCG +
Preference number: 6 (lower is better)
Translates to: RGARPGILLQMM*APRATTDDNAP
Trigger: CGGAGCATTGTCATCCGTGGTGGCCCTGGGAGCCAACATCATCTGCAACAAGATTCCTGGCCTGGCCCCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
CDS CAA 72 bp CGTGGGGCCAGGCCAGGAATCTTGTTGCAGATGATGTaGGCTCCCAGGGCCACCACGGATGACAATGCTAGG +
Preference number: 6 (lower is better)
Translates to: RGARPGILLQMM*APRATTDDNAR
Trigger: CCTAGCATTGTCATCCGTGGTGGCCCTGGGAGCCAACATCATCTGCAACAAGATTCCTGGCCTGGCCCCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229191.2
CDS CCA 72 bp GGGCCACCACGGATGACAATGCTAGGTAACTGCCGCTaGACAGAAGGAGAAAGATCTGCGGGCAATAGACGG +
Preference number: 6 (lower is better)
Translates to: GPPRMTMLGNCR*TEGERSAGNRR
Trigger: CCGTCTATTGCCCGCAGATCTTTCTCCTTCTGTCCAGCGGCAGTTACCTAGCATTGTCATCCGTGGTGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229191.2
CDS GCA 72 bp AGCCTGACACACCGTGACACTTACATTCCAGCTTCATaGGGTCCTCCAGAACCTTTCTGCCCGCCTCATTGT +
Preference number: 6 (lower is better)
Translates to: SLTHRDTYIPAS*GPPEPFCPPHC
Trigger: ACAATGAGGCGGGCAGAAAGGTTCTGGAGGACCGCATGAAGCTGGAATGTAAGTGTCACGGTGTGTCAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023015.15
ENSMUST00000109424.4
ENSMUST00000167968.9
ENSMUST00000229191.2
ENSMUST00000229495.2