Pregenerated sensors for WMP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073006

Ensembl transcript IDs: ENSMUST00000101290.2, ENSMUST00000155294.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CATTTCTTGGTTTGGTCATTATTGGCAGGCTTGAAGGGGTTTGCATaGTACTGGCATATGCTGACTCTATTGTATACTGCCTTATTTTTA	+
Preference number: 5 (lower is better) Translates to: HFLVWSLLAGLKGFA*YWHMLTLLYTALFL Trigger: TAAAAATAAGGCAGTATACAATAGAGTCAGCATATGCCAGTATCATGCAAACCCCTTCAAGCCTGCCAATAATGACCAAACCAAGAAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS CCA 90 bp	GCATATGCTGACTCTATTGTATACTGCCTTATTTTTAGAGCTCTCTaGCCTGAAATAGATGATTTCATAGAAGACAACGATGACTGTAGA	+
Preference number: 5 (lower is better) Translates to: AYADSIVYCLIFRAL*PEIDDFIEDNDDCR Trigger: TCTACAGTCATCGTTGTCTTCTATGAAATCATCTATTTCAGGCCAGAGAGCTCTAAAAATAAGGCAGTATACAATAGAGTCAGCATATGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS GCA 72 bp	CCTTACCAATCCCATAAAGGACACGAGGCTGTGACTTaGTCACATGCCCAATACAGTGGTAGAAATGGTCCT	+
Preference number: 6 (lower is better) Translates to: PYQSHKGHEAVT*SHAQYSGRNGP Trigger: AGGACCATTTCTACCACTGTATTGGGCATGTGAGCAAGTCACAGCCTCGTGTCCTTTATGGGATTGGTAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS TCA 72 bp	CAGATGGTAATGGTGGTGCTTCTGGTGCCAGTGGGTTaGCAAATACATTGGATTTGTAATGAGCCAGAGTTG	+
Preference number: 6 (lower is better) Translates to: QMVMVVLLVPVG*QIHWICNEPEL Trigger: CAACTCTGGCTCATTACAAATCCAATGTATTTGTCAACCCACTGGCACCAGAAGCACCACCATTACCATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS TCA 72 bp	GTTTGGTCATTATTGGCAGGCTTGAAGGGGTTTGCATaGTACTGGCATATGCTGACTCTATTGTATACTGCC	+
Preference number: 6 (lower is better) Translates to: VWSLLAGLKGFA*YWHMLTLLYTA Trigger: GGCAGTATACAATAGAGTCAGCATATGCCAGTATCATGCAAACCCCTTCAAGCCTGCCAATAATGACCAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS TCA 72 bp	GGAATTACTGAAGGATGTACAAGTAGAGCGATCTCCTaGTTCAGACCCTGTGGATTTAGACCACCTTGTTTT	+
Preference number: 6 (lower is better) Translates to: GITEGCTSRAIS*FRPCGFRPPCF Trigger: AAAACAAGGTGGTCTAAATCCACAGGGTCTGAATCAGGAGATCGCTCTACTTGTACATCCTTCAGTAATTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS TCA 72 bp	TTATTCAATCCATTCAGTTTCGCTATCCGATTTTTCTaGATGATACCCCATCGCTTTACGACGAACCCGGAT	+
Preference number: 6 (lower is better) Translates to: LFNPFSFAIRFF*MIPHRFTTNPD Trigger: ATCCGGGTTCGTCGTAAAGCGATGGGGTATCATTCAGAAAAATCGGATAGCGAAACTGAATGGATTGAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS CAA 72 bp	AGTGGTAGAAATGGTCCTGCACATCAGGTAAGTCGTTaGCTGCATATCTTCCTTGACACTTGTTTCTATTTG	+
Preference number: 6 (lower is better) Translates to: SGRNGPAHQVSR*LHIFLDTCFYL Trigger: CAAATAGAAACAAGTGTCAAGGAAGATATGCAGCAAACGACTTACCTGATGTGCAGGACCATTTCTACCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101290.2 ENSMUST00000155294.2
CDS CAA 90 bp	GCCCAATACAGTGGTAGAAATGGTCCTGCACATCAGGTAAGTCGTTaGCTGCATATCTTCCTTGACACTTGTTTCTATTTGATTGGAAAA	+
Preference number: 6 (lower is better) Translates to: AQYSGRNGPAHQVSR*LHIFLDTCFYLIGK Trigger: TTTTCCAATCAAATAGAAACAAGTGTCAAGGAAGATATGCAGCAAACGACTTACCTGATGTGCAGGACCATTTCTACCACTGTATTGGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101290.2 ENSMUST00000155294.2
CDS CAA 90 bp	AGTTTAATGCCTTTTCTGATTTCTTCCATCAATTCATTTCTTGGTTaGGTCATTATTGGCAGGCTTGAAGGGGTTTGCATGATACTGGCA	+
Preference number: 6 (lower is better) Translates to: SLMPFLISSINSFLG*VIIGRLEGVCMILA Trigger: TGCCAGTATCATGCAAACCCCTTCAAGCCTGCCAATAATGACCAAACCAAGAAATGAATTGATGGAAGAAATCAGAAAAGGCATTAAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS TCA 72 bp	ACAACGATGACTGTAGAGTGGAAACTTCACTCAAGGTaGAACTTGATAGTTTTGCTTGTGGTGGATGTAATT	+
Preference number: 6 (lower is better) Translates to: TTMTVEWKLHSR*NLIVLLVVDVI Trigger: AATTACATCCACCACAAGCAAAACTATCAAGTTTCACCTTGAGTGAAGTTTCCACTCTACAGTCATCGTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS GCA 72 bp	TGCATGATACTGGCATATGCTGACTCTATTGTATACTaGCTTATTTTTAGAGCTCTCTGGCCTGAAATAGAT	+
Preference number: 6 (lower is better) Translates to: CMILAYADSIVY*LIFRALWPEID Trigger: ATCTATTTCAGGCCAGAGAGCTCTAAAAATAAGGCAGTATACAATAGAGTCAGCATATGCCAGTATCATGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS CAA 90 bp	CAGGTAAGTCGTTTGCTGCATATCTTCCTTGACACTTGTTTCTATTaGATTGGAAAATATAGGAGGAAGAGCCACCATCATATTGATCTA	+
Preference number: 6 (lower is better) Translates to: QVSRLLHIFLDTCFY*IGKYRRKSHHHIDL Trigger: TAGATCAATATGATGGTGGCTCTTCCTCCTATATTTTCCAATCAAATAGAAACAAGTGTCAAGGAAGATATGCAGCAAACGACTTACCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101290.2 ENSMUST00000155294.2
CDS GCA 72 bp	ATCTTCCAAGTAATTTTTGAGATATCCGGACACTTGTaGTCTCCTTTGTTCTTCACTCTTATCATTCTCCAT	+
Preference number: 6 (lower is better) Translates to: IFQVIFEISGHL*SPLFFTLIILH Trigger: ATGGAGAATGATAAGAGTGAAGAACAAAGGAGAGCACAAGTGTCCGGATATCTCAAAAATTACTTGGAAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS CAA 72 bp	GTGATCCATGTTCAGAGTTTGATTTTGATGGAGATCTaGGTGACTTTGGAAAAGAAGACTTTATGGATTGTG	+
Preference number: 6 (lower is better) Translates to: VIHVQSLILMEI*VTLEKKTLWIV Trigger: CACAATCCATAAAGTCTTCTTTTCCAAAGTCACCAAGATCTCCATCAAAATCAAACTCTGAACATGGATCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS CAA 72 bp	TTGATAGTTTTGCTTGTGGTGGATGTAATTGTCTTTTaGAAAGTGTCATGGGTAACTTTGACTGTGCCTCAA	+
Preference number: 6 (lower is better) Translates to: LIVLLVVDVIVF*KVSWVTLTVPQ Trigger: TTGAGGCACAGTCAAAGTTACCCATGACACTTTCAAAAAGACAATTACATCCACCACAAGCAAAACTATCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS CAA 90 bp	TTGCAACTGGATTTGGTGATAGTGATCCATGTTCAGAGTTTGATTTaGATGGAGATCTTGGTGACTTTGGAAAAGAAGACTTTATGGATT	+
Preference number: 6 (lower is better) Translates to: LQLDLVIVIHVQSLI*MEILVTLEKKTLWI Trigger: AATCCATAAAGTCTTCTTTTCCAAAGTCACCAAGATCTCCATCAAAATCAAACTCTGAACATGGATCACTATCACCAAATCCAGTTGCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS CAA 90 bp	TTGGTGATAGTGATCCATGTTCAGAGTTTGATTTTGATGGAGATCTaGGTGACTTTGGAAAAGAAGACTTTATGGATTGTGTGTTCAAAA	+
Preference number: 6 (lower is better) Translates to: LVIVIHVQSLILMEI*VTLEKKTLWIVCSK Trigger: TTTTGAACACACAATCCATAAAGTCTTCTTTTCCAAAGTCACCAAGATCTCCATCAAAATCAAACTCTGAACATGGATCACTATCACCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101290.2
CDS TCA 72 bp	GGTAACTTTGACTGTGCCTCAATAAGTTTTATTAAGTaGCTCACTGAATGCTCTGGTAATGGATTTAAAGTT	+
Preference number: 6 (lower is better) Translates to: GNFDCASISFIK*LTECSGNGFKV Trigger: AACTTTAAATCCATTACCAGAGCATTCAGTGAGTCACTTAATAAAACTTATTGAGGCACAGTCAAAGTTACC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101290.2