RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WIZ (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024050

Ensembl transcript IDs: ENSMUST00000064694.14, ENSMUST00000087703.12, ENSMUST00000163107.9, ENSMUST00000165912.8, ENSMUST00000169488.10, ENSMUST00000170603.3, ENSMUST00000170617.8, ENSMUST00000171728.3, ENSMUST00000236409.2

Found 428 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAGGCCCAGCCGCATTCGCTGCAGGCCAGTGGAGCCAGGTCAGCTaGGGGCTCCTGGCCTGGTGCTCGGCGGTGCTGGCTCATGTGTTC +
Preference number: 1 (lower is better)
Translates to: EGPAAFAAGQWSQVS*GLLAWCSAVLAHVF
Trigger: GAACACATGAGCCAGCACCGCCGAGCACCAGGCCAGGAGCCCCCAGCTGACCTGGCTCCACTGGCCTGCAGCGAATGCGGCTGGGCCTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 90 bp CCGCATTCGCTGCAGGCCAGTGGAGCCAGGTCAGCTGGGGGCTCCTaGCCTGGTGCTCGGCGGTGCTGGCTCATGTGTTCTAGGAGGTGT +
Preference number: 1 (lower is better)
Translates to: PHSLQASGARSAGGS*PGARRCWLMCSRRC
Trigger: ACACCTCCTAGAACACATGAGCCAGCACCGCCGAGCACCAGGCCAGGAGCCCCCAGCTGACCTGGCTCCACTGGCCTGCAGCGAATGCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp AGCCACCCAAAGGTGCATCTAGGAGCAGGAAGTCCAGCGGGTGGGTaGTTCTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGGGGATGCTC +
Preference number: 1 (lower is better)
Translates to: SHPKVHLGAGSPAGG*FSARAPQAAAVGML
Trigger: GAGCATCCCCACAGCTGCCGCCTGAGGAGCCCGAGCTGAGAAGCACCCACCCGCTGGACTTCCTGCTCCTAGATGCACCTTTGGGTGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 90 bp AAGCCTGGTGCAGTTGCCAGTGCTGTTCCAGGGCAGTGGGTTCTGTaGAGGCCCAGCCGCATTCGCTGCAGGCCAGTGGAGCCAGGTCAG +
Preference number: 1 (lower is better)
Translates to: KPGAVASAVPGQWVL*RPSRIRCRPVEPGQ
Trigger: CTGACCTGGCTCCACTGGCCTGCAGCGAATGCGGCTGGGCCTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 90 bp TGGGCTGCCACCCCTGAAAGGTTCCGTGGCCTGCCGGCTGGGCAGTaGCCCACGCACATGCAGCTTGGCATGCTGCATGAAGGCTCTAGA +
Preference number: 1 (lower is better)
Translates to: WAATPERFRGLPAGQ*PTHMQLGMLHEGSR
Trigger: TCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACCTTTCAGGGGTGGCAGCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 90 bp AGTGAGCCACCCAAAGGTGCATCTAGGAGCAGGAAGTCCAGCGGGTaGGTGCTTCTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGGGGAT +
Preference number: 1 (lower is better)
Translates to: SEPPKGASRSRKSSG*VLLSSGSSGGSCGD
Trigger: ATCCCCACAGCTGCCGCCTGAGGAGCCCGAGCTGAGAAGCACCCACCCGCTGGACTTCCTGCTCCTAGATGCACCTTTGGGTGGCTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp CTAACATCTAAGACTGGGCTGCCACCCCTGAAAGGTTCCGTGGCCTaGCGGCTGGGCAGTGACCCACGCACATGCAGCTTGGCATGCTGC +
Preference number: 1 (lower is better)
Translates to: LTSKTGLPPLKGSVA*RLGSDPRTCSLACC
Trigger: GCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACCTTTCAGGGGTGGCAGCCCAGTCTTAGATGTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 90 bp GTACCCTCCCTGGCCTCCTGGACCATGGGATGTTCCCAAGACCCCTaGACATCAAGGGATGCAGGGAAGGGACCCAGAAGATGGGGTGGT +
Preference number: 1 (lower is better)
Translates to: VPSLASWTMGCSQDP*TSRDAGKGPRRWGG
Trigger: ACCACCCCATCTTCTGGGTCCCTTCCCTGCATCCCTTGATGTTCAGGGGTCTTGGGAACATCCCATGGTCCAGGAGGCCAGGGAGGGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp GCCTGCCGGCTGGGCAGTGACCCACGCACATGCAGCTTGGCATGCTaGATGAAGGCTCTAGAGGAATTGGTGCCAAAGACGCACTTGGAG +
Preference number: 1 (lower is better)
Translates to: ACRLGSDPRTCSLAC*MKALEELVPKTHLE
Trigger: CTCCAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp GTGGCCTGCCGGCTGGGCAGTGACCCACGCACATGCAGCTTGGCATaGTGCATGAAGGCTCTAGAGGAATTGGTGCCAAAGACGCACTTG +
Preference number: 1 (lower is better)
Translates to: VACRLGSDPRTCSLA*CMKALEELVPKTHL
Trigger: CAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp CTGAAAGGTTCCGTGGCCTGCCGGCTGGGCAGTGACCCACGCACATaGAGCTTGGCATGCTGCATGAAGGCTCTAGAGGAATTGGTGCCA +
Preference number: 1 (lower is better)
Translates to: LKGSVACRLGSDPRT*SLACCMKALEELVP
Trigger: TGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACCTTTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 90 bp CTGAACATCAAGGGATGCAGGGAAGGGACCCAGAAGATGGGGTGGTaGGGAGCCCGGCTGAAAGTCCAGGCTGTCTCCATCCCAGTAGCT +
Preference number: 1 (lower is better)
Translates to: LNIKGCREGTQKMGW*GARLKVQAVSIPVA
Trigger: AGCTACTGGGATGGAGACAGCCTGGACTTTCAGCCGGGCTCCCCACCACCCCATCTTCTGGGTCCCTTCCCTGCATCCCTTGATGTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 90 bp GAGTTCACTGTCCAGGTCTGGGTGGCCACTTCTGAGGCTGATGTGTaGAGACCCCACTCAGAAGGCTGGGCCACCTGCCCAAAGTCCTCT +
Preference number: 1 (lower is better)
Translates to: EFTVQVWVATSEADV*RPHSEGWATCPKSS
Trigger: AGAGGACTTTGGGCAGGTGGCCCAGCCTTCTGAGTGGGGTCTTCACACATCAGCCTCAGAAGTGGCCACCCAGACCTGGACAGTGAACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp AGTTCACACAGGTATGGTCCTGTCTGGACTGGGGACAGTAGGGGCTaGAGTCGCTCCACAGATGCTTCAGAGTTCACTGTCCAGGTCTGG +
Preference number: 1 (lower is better)
Translates to: SSHRYGPVWTGDSRG*SRSTDASEFTVQVW
Trigger: CCAGACCTGGACAGTGAACTCTGAAGCATCTGTGGAGCGACTGCAGCCCCTACTGTCCCCAGTCCAGACAGGACCATACCTGTGTGAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp ATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCAGTTGCCAGTaGTGTTCCAGGGCAGTGGGTTCTGTGAAGGCCCAGCCGCATTCG +
Preference number: 1 (lower is better)
Translates to: ISSIIFSREAWCSCQ*CSRAVGSVKAQPHS
Trigger: CGAATGCGGCTGGGCCTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 90 bp GCAGTCGCTCCACAGATGCTTCAGAGTTCACTGTCCAGGTCTGGGTaGCCACTTCTGAGGCTGATGTGTGAAGACCCCACTCAGAAGGCT +
Preference number: 1 (lower is better)
Translates to: AVAPQMLQSSLSRSG*PLLRLMCEDPTQKA
Trigger: AGCCTTCTGAGTGGGGTCTTCACACATCAGCCTCAGAAGTGGCCACCCAGACCTGGACAGTGAACTCTGAAGCATCTGTGGAGCGACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 90 bp GATCAGGACAGTAGGGGCATTTCCGCTCCTCATGCTTTAGTGCCATaGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCAC +
Preference number: 1 (lower is better)
Translates to: DQDSRGISAPHALVP*LGPLLGVCSDPVSH
Trigger: GTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGGCACTAAAGCATGAGGAGCGGAAATGCCCCTACTGTCCTGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp TTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCAGTTaGCAGTGCTGTTCCAGGGCAGTGGGTTCTGTGAAGGCCCAGCCG +
Preference number: 1 (lower is better)
Translates to: FWISSIIFSREAWCS*QCCSRAVGSVKAQP
Trigger: CGGCTGGGCCTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 90 bp CTCGGCGGTGCTGGCTCATGTGTTCTAGGAGGTGTTCCTTGTGCTTaGAGTAGATGCTGCACTCGATGCAAGGAAACACAGCTGGCTCCT +
Preference number: 1 (lower is better)
Translates to: LGGAGSCVLGGVPCA*SRCCTRCKETQLAP
Trigger: AGGAGCCAGCTGTGTTTCCTTGCATCGAGTGCAGCATCTACTTCAAGCACAAGGAACACCTCCTAGAACACATGAGCCAGCACCGCCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 90 bp GAGGGGCGGGCTTGTCTGCGTTCAAATTTGTTGATATTTTGCCTTTaGTGCTCCTCTGACTTCACGGTCCCAGGTGGGCTGGTTGCCAGA +
Preference number: 1 (lower is better)
Translates to: EGRACLRSNLLIFCL*CSSDFTVPGGLVAR
Trigger: TCTGGCAACCAGCCCACCTGGGACCGTGAAGTCAGAGGAGCATCAAAGGCAAAATATCAACAAATTTGAACGCAGACAAGCCCGCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR GCA 90 bp ATGAAGGCTCTAGAGGAATTGGTGCCAAAGACGCACTTGGAGCATTaGAGTCGTGCCTCACGGCCCTCATCACCTGGAAACTGCTTTAGC +
Preference number: 1 (lower is better)
Translates to: MKALEELVPKTHLEH*SRASRPSSPGNCFS
Trigger: GCTAAAGCAGTTTCCAGGTGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 90 bp CAACTTTGTGGCAGGACAGCTCAAAGGATGAACCTCCTCCCCTCTTaGAGGGTAGAGTCAGGAGTGACTAATGGTTCCAGTGACCCTGAC +
Preference number: 1 (lower is better)
Translates to: QLCGRTAQRMNLLPS*RVESGVTNGSSDPD
Trigger: GTCAGGGTCACTGGAACCATTAGTCACTCCTGACTCTACCCTCCAAGAGGGGAGGAGGTTCATCCTTTGAGCTGTCCTGCCACAAAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR CCA 90 bp GGTACCCATAACTTCCATGTCCAAGGTCTTGGGAGTGTTATCCACTaGCACAATTACCCTCCTAAAGGAAGTGACAGTCGGGGGCTGGGC +
Preference number: 1 (lower is better)
Translates to: GTHNFHVQGLGSVIH*HNYPPKGSDSRGLG
Trigger: GCCCAGCCCCCGACTGTCACTTCCTTTAGGAGGGTAATTGTGCCAGTGGATAACACTCCCAAGACCTTGGACATGGAAGTTATGGGTACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 90 bp CTGCAGAGGCATCTGAGGGGCGGGCTTGTCTGCGTTCAAATTTGTTaGTATTTTGCCTTTGATGCTCCTCTGACTTCACGGTCCCAGGTG +
Preference number: 1 (lower is better)
Translates to: LQRHLRGGLVCVQIC*YFAFDAPLTSRSQV
Trigger: CACCTGGGACCGTGAAGTCAGAGGAGCATCAAAGGCAAAATATCAACAAATTTGAACGCAGACAAGCCCGCCCCTCAGATGCCTCTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR GCA 90 bp TTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTaGAGTTGCCAGTGCTGTTCCAGGGCAGTGGGTTCTGTGAAGGCC +
Preference number: 1 (lower is better)
Translates to: FSFWISSIIFSREAW*SCQCCSRAVGSVKA
Trigger: GGCCTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp ACTCGATGCAAGGAAACACAGCTGGCTCCTCTTCCTCTTCTTCATTaGTGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGGT +
Preference number: 1 (lower is better)
Translates to: TRCKETQLAPLPLLH*CPLHQLLPATVHTG
Trigger: ACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAGAAGAGGAAGAGGAGCCAGCTGTGTTTCCTTGCATCGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp TTGGAGCATTGCAGTCGTGCCTCACGGCCCTCATCACCTGGAAACTaGTTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCC +
Preference number: 1 (lower is better)
Translates to: LEHCSRASRPSSPGN*FSFWISSIIFSREA
Trigger: GGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAAGCAGTTTCCAGGTGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 90 bp GAAGCAGATGCCATAGGGGAAGGAAAGGCCAGCTTCCCAAGAGACTaGTGGCCTGAATTTAACAATGGGAAATTTCTCATGCCTGGCTGC +
Preference number: 1 (lower is better)
Translates to: EADAIGEGKASFPRD*WPEFNNGKFLMPGC
Trigger: GCAGCCAGGCATGAGAAATTTCCCATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCTGGCCTTTCCTTCCCCTATGGCATCTGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 90 bp TGCTTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTaGTGCAGTTGCCAGTGCTGTTCCAGGGCAGTGGGTTCTGTGAAG +
Preference number: 1 (lower is better)
Translates to: CFSFWISSIIFSREA*CSCQCCSRAVGSVK
Trigger: CTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp GGTTCCGTGGCCTGCCGGCTGGGCAGTGACCCACGCACATGCAGCTTGGCATGCGAGCCCCTGAGGCTCTaGCAAGGCAGGAGGCAGCTG +
Preference number: 2 (lower is better)
Translates to: GSVACRLGSDPRTCSLACEPLRL*QGRRQL
Trigger: CAGCTGCCTCCTGCCTTGTCAGAGCCTCAGGGGCTC...GCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp AGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGAGGTGGGCCCGGGCATaGCTGGAGAGGCCAGCCCGA +
Preference number: 2 (lower is better)
Translates to: RRQLWGCSGGGSYDLWPERWARA*LERPAR
Trigger: TCGGGCTGGCCTCTCCAGTCATGCCCGGGCCCACCT...CTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GCAGGAAGTCCAGCGGGTGGGTGCTTCTCAGCTCGGGCTCCTCAGGCGGCAGCTCCCCACTCAGAAGGCTaGGCCACCTGCCCAAAGTCC +
Preference number: 2 (lower is better)
Translates to: AGSPAGGCFSARAPQAAAPHSEG*ATCPKS
Trigger: GGACTTTGGGCAGGTGGCCCAGCCTTCTGAGTGGGG...AGCTGCCGCCTGAGGAGCCCGAGCTGAGAAGCACCCACCCGCTGGACTTCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp AAGCAGGCACCGCAGACCTCACAGGTGGTCAGGCTCTGGGCCTTGAGGTCTGGCGCGGGAAGGGCATGGTaGGAGGTAAGCGTGGCCGTC +
Preference number: 2 (lower is better)
Translates to: KQAPQTSQVVRLWALRSGAGRAW*EVSVAV
Trigger: GACGGCCACGCTTACCTCTCACCATGCCCTTCCCGC...GCCAGACCTCAAGGCCCAGAGCCTGACCACCTGTGAGGTCTGCGGTGCCTGCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR GCA 90 bp AGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCCCAGCCGCATTCGCTaGAGGCCAGTGGAGCCAGGT +
Preference number: 2 (lower is better)
Translates to: RRQLWGCSGGGSYDLWPEPSRIR*RPVEPG
Trigger: ACCTGGCTCCACTGGCCTGCAGCGAATGCGGCTGGG...CTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp GCAGGAAGTCCAGCGGGTGGGTGCTTCTCAGCTCGGGCTCCTCAGGCGGCAGCTTCCCGGGAAGCCTGGTaGAGTTGCCAGTGCTGTTCC +
Preference number: 2 (lower is better)
Translates to: AGSPAGGCFSARAPQAAASREAW*SCQCCS
Trigger: GGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGA...AGCTGCCGCCTGAGGAGCCCGAGCTGAGAAGCACCCACCCGCTGGACTTCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp AAGCAGGCACCGCAGACCTCACAGGTGGTCAGGCTCTGGGCCTTGAGGTCTGGCGGGCCCGGGCATGACTaGAGAGGCCAGCCCGAGTAT +
Preference number: 2 (lower is better)
Translates to: KQAPQTSQVVRLWALRSGGPGHD*RGQPEY
Trigger: ATACTCGGGCTGGCCTCTCCAGTCATGCCCGGGCCC...GCCAGACCTCAAGGCCCAGAGCCTGACCACCTGTGAGGTCTGCGGTGCCTGCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR CCA 90 bp GGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCGGTGGGTCAGGCCCTTaGCTGAGAAGCCAGGAGGTG +
Preference number: 2 (lower is better)
Translates to: GGSCGDARVVAAMTCGLSGGSGP*LRSQEV
Trigger: CACCTCCTGGCTTCTCAGCCAAGGGCCTGACCCACC...GCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GGTTCCGTGGCCTGCCGGCTGGGCAGTGACCCACGCACATGCAGCTTGGCATGCGAACCTCTGCTCAGATaGGGTACCCTCCCTGGCCTC +
Preference number: 2 (lower is better)
Translates to: GSVACRLGSDPRTCSLACEPLLR*GTLPGL
Trigger: GAGGCCAGGGAGGGTACCCCATCTGAGCAGAGGTTC...GCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp GGCTCCTGGCCTGGTGCTCGGCGGTGCTGGCTCATGTGTTCTAGGAGGTGTTCCGTGACAGTCGGGGGCTaGGCAGGAAGGTCCAGGTGC +
Preference number: 2 (lower is better)
Translates to: GSWPGARRCWLMCSRRCSVTVGG*AGRSRC
Trigger: GCACCTGGACCTTCCTGCCCAGCCCCCGACTGTCAC...GGAACACCTCCTAGAACACATGAGCCAGCACCGCCGAGCACCAGGCCAGGAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp CTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTTCTGAGGCTGATGTGTaGAGACCCCACTCAGAAGGC +
Preference number: 2 (lower is better)
Translates to: LSSGSSGGSCGDARVVAASEADV*RPHSEG
Trigger: GCCTTCTGAGTGGGGTCTTCACACATCAGCCTCAGA...AGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCTGAGGAGCCCGAGCTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp GGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCGGTGTCCCCCTGGCCTaGATTGGGTCCGTCTCTTCA +
Preference number: 2 (lower is better)
Translates to: GGSCGDARVVAAMTCGLSGVPLA*IGSVSS
Trigger: TGAAGAGACGGACCCAATCCAGGCCAGGGGGACACC...GCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp GGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCGAGCATGGATTCCCCTaGGCAAGCACCGTGGCATGT +
Preference number: 2 (lower is better)
Translates to: GGSCGDARVVAAMTCGLSEHGFP*ASTVAC
Trigger: ACATGCCACGGTGCTTGCTCAGGGGAATCCATGCTC...GCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCGAGTGGAGAGCTGGATaGGTGGGTCAGGCCCTTGGC +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCEWRAG*VGQALG
Trigger: GCCAAGGGCCTGACCCACCCATCCAGCTCTCCACTC...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAATGGGCTAGGACCTGGTaGGTGGAGGTGTCCCCCTGG +
Preference number: 2 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQWARTW*VEVSPW
Trigger: CCAGGGGGACACCTCCACCCACCAGGTCCTAGCCCA...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTTGGCTGCTGATAGTCTaGACCAAAGGCAAGGTCAGG +
Preference number: 2 (lower is better)
Translates to: LSSGSSGGSCGDARVVAAWLLIV*TKGKVR
Trigger: CCTGACCTTGCCTTTGGTCCAGACTATCAGCAGCCA...AGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCTGAGGAGCCCGAGCTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCGAGAGCCATCTTCAGTaGGGGCAGGAGCCAGGTCTC +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCESHLQ*GQEPGL
Trigger: GAGACCTGGCTCCTGCCCTCACTGAAGATGGCTCTC...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CCCACTCGGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGAGGAGAGCTGGATGGGTaGGTCAGGCCCTTGGCTGAG +
Preference number: 2 (lower is better)
Translates to: PTRFRWPRTWLASPIHCGGELDG*VRPLAE
Trigger: CTCAGCCAAGGGCCTGACCCACCCATCCAGCTCTCC...TCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACCGAGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCCCCCCTGGCCTGGATTaGGTCCGTCTCTTCAGGATC +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCPPGLD*VRLFRI
Trigger: GATCCTGAAGAGACGGACCCAATCCAGGCCAGGGGG...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCAACCTCCTCCCCTCTTaGAGGGTAGAGTCAGGAGTG +
Preference number: 2 (lower is better)
Translates to: GGSCGDARVVAAMTCGLSNLLPS*RVESGV
Trigger: CACTCCTGACTCTACCCTCCAAGAGGGGAGGAGGTT...GCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp GGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGAAACGATCTGGAGCCAGGTCAGCTaGGGGCTCCTGGCCTGGTGC +
Preference number: 2 (lower is better)
Translates to: GSGGPGHGWLARYIVETIWSQVS*GLLAWC
Trigger: GCACCAGGCCAGGAGCCCCCAGCTGACCTGGCTCCA...GATCGTTTCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 90 bp GGATTCTTGGGTGTAGGGGATCCTGCCAGAGTCAGTGGGGCCTTCTaGAGGAGTGGAGAGCTGGATGGGTGGGTCAGGCCCTTGGCTGAG +
Preference number: 2 (lower is better)
Translates to: GFLGVGDPARVSGAF*RSGELDGWVRPLAE
Trigger: CTCAGCCAAGGGCCTGACCCACCCATCCAGCTCTCCACTCCTCAAGAAGGCCCCACTGACTCTGGCAGGATCCCCTACACCCAAGAATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CAA 90 bp GGTTCCGTGGCCTGCCGGCTGGGCAGTGACCCACGCACATGCAGCTaGGCATGCTGCATGAAGGCTCTAGAGGAATTGGTGCCAAAGACG +
Preference number: 2 (lower is better)
Translates to: GSVACRLGSDPRTCS*ACCMKALEELVPKT
Trigger: CGTCTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCGAGCATGGATTCCCCTaGGCAAGCACCGTGGCATGT +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCEHGFP*ASTVAC
Trigger: ACATGCCACGGTGCTTGCTCAGGGGAATCCATGCTC...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACAGCTCCCGGGGAACTTaGGTCGGCCCAGCTCCTGGT +
Preference number: 2 (lower is better)
Translates to: GCSGGGSYDLWPELCHQNSSRGT*VGPAPG
Trigger: ACCAGGAGCTGGGCCGACCCAAGTTCCCCGGGAGCT...GTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCTCCAGCTTCAAGCCCTaGTTCTCCCCCAGCACTTCG +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCSSFKP*FSPSTS
Trigger: CGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGA...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGCCCCACTCAGAAGGCTaGGCCACCTGCCCAAAGTCC +
Preference number: 2 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKPHSEG*ATCPKS
Trigger: GGACTTTGGGCAGGTGGCCCAGCCTTCTGAGTGGGG...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTAGGTGGGCCCGGGCATaGCTGGAGAGGCCAGCCCGA +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGRWARA*LERPAR
Trigger: TCGGGCTGGCCTCTCCAGTCATGCCCGGGCCCACCT...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGCAGGTAGCTGGCAGCTaGGGGCTTGGACCCTGTGAT +
Preference number: 2 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKQVAGS*GLGPCD
Trigger: ATCACAGGGTCCAAGCCCTCAGCTGCCAGCTACCTG...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp GGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCGCATCTTGGAAAGTCTaGTTCAACTCAAGGGCTGGC +
Preference number: 2 (lower is better)
Translates to: GGSCGDARVVAAMTCGLSASWKV*FNSRAG
Trigger: GCCAGCCCTTGAGTTGAAGCAGACTTTCCAAGATGC...GCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGACAGGTGGTCAGGCTCTaGGCCTTGAGGTCTGGCAGC +
Preference number: 2 (lower is better)
Translates to: SRTGSARADRFKGAISSRQVVRL*ALRSGS
Trigger: GCTGCCAGACCTCAAGGCCCAGAGCCTGACCACCTG...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR CCA 90 bp TCACAGCGGATATCTCTTGTTGGCTCTGGGCCTGAAGTGAGATTCAGCGGCCCCGGTGGGTCAGGCCCTTaGCTGAGAAGCCAGGAGGTG +
Preference number: 2 (lower is better)
Translates to: SQRISLVGSGPEVRFSGPGGSGP*LRSQEV
Trigger: CACCTCCTGGCTTCTCAGCCAAGGGCCTGACCCACC...GGGGCCGCTGAATCTCACTTCAGGCCCAGAGCCAACAAGAGATATCCGCTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TCACAGCGGATATCTCTTGTTGGCTCTGGGCCTGAAGTGAGATTCAGCGGCCCCGGAGAGCTGGATGGGTaGGTCAGGCCCTTGGCTGAG +
Preference number: 2 (lower is better)
Translates to: SQRISLVGSGPEVRFSGPGELDG*VRPLAE
Trigger: CTCAGCCAAGGGCCTGACCCACCCATCCAGCTCTCC...GGGGCCGCTGAATCTCACTTCAGGCCCAGAGCCAACAAGAGATATCCGCTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TCACAGCGGATATCTCTTGTTGGCTCTGGGCCTGAAGTGAGATTCAGCGGCCCCGAGTGGAGAGCTGGATaGGTGGGTCAGGCCCTTGGC +
Preference number: 2 (lower is better)
Translates to: SQRISLVGSGPEVRFSGPEWRAG*VGQALG
Trigger: GCCAAGGGCCTGACCCACCCATCCAGCTCTCCACTC...GGGGCCGCTGAATCTCACTTCAGGCCCAGAGCCAACAAGAGATATCCGCTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACGATAGGAGGAAGCGGTCCTCCTaGAGGGGCCGCTTGGTTGCC +
Preference number: 2 (lower is better)
Translates to: SGGGSYDLWPELCHQNDRRKRSS*RGRLVA
Trigger: GGCAACCAAGCGGCCCCTCCAGGAGGACCGCTTCCT...CCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCAACCTCCTCCCCCTCCCTGGCCTCCTaGACCATGGGATGTTCCCAA +
Preference number: 2 (lower is better)
Translates to: WLVQGWLVRSSKASPTSSPSLAS*TMGCSQ
Trigger: TTGGGAACATCCCATGGTCCAGGAGGCCAGGGAGGG...GGAGGAGGTTGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TTGGTGCCAAAGACGCACTTGGAGCATTGCAGTCGTGCCTCACGGCCCTCATCATGTTGGCTCTGGGCCTaGAGTGAGATTCAGCGGCCC +
Preference number: 2 (lower is better)
Translates to: LVPKTHLEHCSRASRPSSCWLWA*SEIQRP
Trigger: GGGCCGCTGAATCTCACTTCAGGCCCAGAGCCAACA...TGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp GGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACGGGTGTAGCAAGGCCTaGGAACATCTTCCGGGCCGT +
Preference number: 2 (lower is better)
Translates to: GCSGGGSYDLWPELCHQNGCSKA*EHLPGR
Trigger: ACGGCCCGGAAGATGTTCTCAGGCCTTGCTACACCC...GTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAAAGACTGGGGCCATTGTaGCTTTGGGGAAGTTGGTCG +
Preference number: 2 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQRLGPL*LWGSWS
Trigger: CGACCAACTTCCCCAAAGGCACAATGGCCCCAGTCT...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp CTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTAGCTTCCCAAGAGACTaGTGGCCTGAATTTAACAAT +
Preference number: 2 (lower is better)
Translates to: LSSGSSGGSCGDARVVAASFPRD*WPEFNN
Trigger: ATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCT...AGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCTGAGGAGCCCGAGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp AGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGGCATCTTGGAAAGTCTaGTTCAACTCAAGGGCTGGC +
Preference number: 2 (lower is better)
Translates to: RRQLWGCSGGGSYDLWPEASWKV*FNSRAG
Trigger: GCCAGCCCTTGAGTTGAAGCAGACTTTCCAAGATGC...CTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGAGCATTGTGGGCTCAGTaGGAGCTCCCAAGCCCTAGG +
Preference number: 2 (lower is better)
Translates to: SRTGSARADRFKGAISSRALWAQ*ELPSPR
Trigger: CCTAGGGCTTGGGAGCTCCCACTGAGCCCACAATGC...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR CCA 90 bp TGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCAACCTCCTCCTGCCTTTGGGGAAGTTaGTCGGGGACTCAGGGACAG +
Preference number: 2 (lower is better)
Translates to: WLVQGWLVRSSKASPTSSCLWGS*SGTQGQ
Trigger: CTGTCCCTGAGTCCCCGACCAACTTCCCCAAAGGCA...GGAGGAGGTTGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGGTGCATCCCCCTGGCCTGGATTaGGTCCGTCTCTTCAGGATC +
Preference number: 2 (lower is better)
Translates to: LGPLLGVCSDPVSHPKVHPPGLD*VRLFRI
Trigger: GATCCTGAAGAGACGGACCCAATCCAGGCCAGGGGG...ATGCACCTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GGCCTGGTGCTCGGCGGTGCTGGCTCATGTGTTCTAGGAGGTGTTCCTTGTGCTAGGCTGCTTCTGTCTTaGTCCTCCCCAAACTGTGGC +
Preference number: 2 (lower is better)
Translates to: GLVLGGAGSCVLGGVPCARLLLS*SSPNCG
Trigger: GCCACAGTTTGGGGAGGACCAAGACAGAAGCAGCCT...AGCACAAGGAACACCTCCTAGAACACATGAGCCAGCACCGCCGAGCACCAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGTTCGCTGCAGGCCAGTaGAGCCAGGTCAGCTGGGGG +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKFAAGQ*SQVSWG
Trigger: CCCCCAGCTGACCTGGCTCCACTGGCCTGCAGCGAA...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR CAA 90 bp GGGGGCAACTCCGCTGCTGAGGTGGCCAGCAGCTCTTGCAGGATGTaGATGGGTGAGATGGTGAGTTCCCAGTTGGTGATGCCAAAGTCA +
Preference number: 2 (lower is better)
Translates to: GGNSAAEVASSSCRM*MGEMVSSQLVMPKS
Trigger: TGACTTTGGCATCACCAACTGGGAACTCACCATCTCACCCATCAACATCCTGCAAGAGCTGCTGGCCACCTCAGCAGCGGAGTTGCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CAA 90 bp TTTGCCTTTGATGCTCCTCTGACTTCACGGTCCCAGGTGGGCTGGTaGCCAGAGGCCGTTCACCACTGTCAGCTGCCCTTCCAGCTTCAA +
Preference number: 2 (lower is better)
Translates to: FAFDAPLTSRSQVGW*PEAVHHCQLPFQLQ
Trigger: TTGAAGCTGGAAGGGCAGCTGACAGTGGTGAACGGCCTCTGGCAACCAGCCCACCTGGGACCGTGAAGTCAGAGGAGCATCAAAGGCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CAA 90 bp CTCAGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTaGTGGCCTGAGCTTTGCCATCAGAACGATAGGTACCATTCCTTG +
Preference number: 2 (lower is better)
Translates to: LRRQLWGCSGGGSYD*WPELCHQNDRYHSL
Trigger: CAAGGAATGGTACCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp GGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCCGTGAAAATAGATATTaGTGGGGCAAGAGGGAACAG +
Preference number: 2 (lower is better)
Translates to: GGSCGDARVVAAMTCGLSRENRY*WGKREQ
Trigger: CTGTTCCCTCTTGCCCCATCAATATCTATTTTCACG...GCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp TTGGTGCCAAAGACGCACTTGGAGCATTGCAGTCGTGCCTCACGGCCCTCATCAAGCACCACTGCTTTCTaGCTCTGCGACCCCAAGCTG +
Preference number: 2 (lower is better)
Translates to: LVPKTHLEHCSRASRPSSSTTAF*LCDPKL
Trigger: CAGCTTGGGGTCGCAGAGTCAGAAAGCAGTGGTGCT...TGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp GGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACTATCTTCTCGAGGCGTaGCCCAGGGACCCTCAGATG +
Preference number: 2 (lower is better)
Translates to: GCSGGGSYDLWPELCHQNYLLEA*PRDPQM
Trigger: CATCTGAGGGTCCCTGGGGCACGCCTCGAGAAGATA...GTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp TATGCATCCTGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCAGGGGACAGTAGGGGCTaGAGTCGCTCCACAGATGCT +
Preference number: 2 (lower is better)
Translates to: YASWLVQGWLVRSSKASPGDSRG*SRSTDA
Trigger: AGCATCTGTGGAGCGACTGCAGCCCCTACTGTCCCC...TGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCAGGATGCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGACTCCGCTGCTGAGGTaGCCAGCAGCTCTTGCAGGA +
Preference number: 2 (lower is better)
Translates to: PCLVARHREVLFSPAIRLTPLLR*PAALAG
Trigger: TCCTGCAAGAGCTGCTGGCCACCTCAGCAGCGGAGT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCAACCTCCTCCCGTAGAGGAGGTCGATaGGAGCACCACTGCTTTCTG +
Preference number: 2 (lower is better)
Translates to: WLVQGWLVRSSKASPTSSRRGGR*EHHCFL
Trigger: CAGAAAGCAGTGGTGCTCCCATCGACCTCCTCTACG...GGAGGAGGTTGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGAACATCTTCCGGGCCGTaGGAGGAGGAGAAGCAGTTG +
Preference number: 2 (lower is better)
Translates to: SRTGSARADRFKGAISSRTSSGP*EEEKQL
Trigger: CAACTGCTTCTCCTCCTCCCACGGCCCGGAAGATGT...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR CCA 90 bp TCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACGATAGGCCAGGGACCCTCAGATaGGTGTGGCTCCCCATGAAG +
Preference number: 2 (lower is better)
Translates to: SGGGSYDLWPELCHQNDRPGTLR*VWLPMK
Trigger: CTTCATGGGGAGCCACACCCATCTGAGGGTCCCTGG...CCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GCAGGAAGTCCAGCGGGTGGGTGCTTCTCAGCTCGGGCTCCTCAGGCGGCAGCTTCCATTCTCTGCAGGTaGACAGTGCTTTTGTTTCTA +
Preference number: 2 (lower is better)
Translates to: AGSPAGGCFSARAPQAAASILCR*TVLLFL
Trigger: TAGAAACAAAAGCACTGTCCACCTGCAGAGAATGGA...AGCTGCCGCCTGAGGAGCCCGAGCTGAGAAGCACCCACCCGCTGGACTTCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 90 bp CCACGCACATGCAGCTTGGCATGCTGCATGAAGGCTCTAGAGGAATaGGTGCCAAAGACGCACTTGGAGCATTGCAGTCGTGCCTCACGG +
Preference number: 2 (lower is better)
Translates to: PRTCSLACCMKALEE*VPKTHLEHCSRASR
Trigger: CCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCAACCTCCTCCCATAGAAAGCAACAGTaGAAAGGGGGAGGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: WLVQGWLVRSSKASPTSSHRKQQ*KGGGQQ
Trigger: CTGCTGCCCTCCCCCTTTTCACTGTTGCTTTCTATG...GGAGGAGGTTGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGTGTTGGCTCTGGGCCTaGAGTGAGATTCAGCGGCCC +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKCWLWA*SEIQRP
Trigger: GGGCCGCTGAATCTCACTTCAGGCCCAGAGCCAACA...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp TTGGTGCCAAAGACGCACTTGGAGCATTGCAGTCGTGCCTCACGGCCCTCATCATGTTCCCAAGACCCCTaGACATCAAGGGATGCAGGG +
Preference number: 2 (lower is better)
Translates to: LVPKTHLEHCSRASRPSSCSQDP*TSRDAG
Trigger: CCCTGCATCCCTTGATGTTCAGGGGTCTTGGGAACA...TGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp GGCAGTGACCCACGCACATGCAGCTTGGCATGCTGCATGAAGGCTCTAGAGGAATCTGAGGCTGATGTGTaGAGACCCCACTCAGAAGGC +
Preference number: 2 (lower is better)
Translates to: GSDPRTCSLACCMKALEESEADV*RPHSEG
Trigger: GCCTTCTGAGTGGGGTCTTCACACATCAGCCTCAGA...TTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGTGGAGCTGTTGCTGCTaGGTTTCTGAGGCATCGACT +
Preference number: 2 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKWSCCC*VSEAST
Trigger: AGTCGATGCCTCAGAAACTCAGCAGCAACAGCTCCA...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGAGTGGCCAGCAGCTCTTaGAGGATGTTGATGGGTGAG +
Preference number: 2 (lower is better)
Translates to: SRTGSARADRFKGAISSRVASSS*RMLMGE
Trigger: CTCACCCATCAACATCCTGCAAGAGCTGCTGGCCAC...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR GCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCCAGACTCTTGCTAGGTaGTGTGAAACCACAGTGAAC +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCQTLAR*CETTVN
Trigger: GTTCACTGTGGTTTCACAGCACCTAGCAAGAGTCTG...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGCCATCTCCGTAGATTaGCCCAGGGTCCTCAGCCCA +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKAISVD*PRVLSP
Trigger: TGGGCTGAGGACCCTGGGCCAATCTACGGAGATGGC...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR CCA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAAGAGACCCCAAGTCCATaGCCACCATTGTGTTTTCCT +
Preference number: 2 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQETPSP*PPLCFP
Trigger: AGGAAAACACAATGGTGGCCATGGACTTGGGGTCTC...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR CCA 90 bp GGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACAACCTCCTCCCCTCTTaGAGGGTAGAGTCAGGAGTG +
Preference number: 2 (lower is better)
Translates to: GCSGGGSYDLWPELCHQNNLLPS*RVESGV
Trigger: CACTCCTGACTCTACCCTCCAAGAGGGGAGGAGGTT...GTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp GGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGAAACGATCAGGCTGCTTCTGTCTTaGTCCTCCCCAAACTGTGGC +
Preference number: 2 (lower is better)
Translates to: GSGGPGHGWLARYIVETIRLLLS*SSPNCG
Trigger: GCCACAGTTTGGGGAGGACCAAGACAGAAGCAGCCT...GATCGTTTCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp CTTCCTGCAACAGTTCACACAGGTATGGTCCTGTCTGGACTGGGGACAGTAGGGCTGTCCAGGTCTGGGTaGCCACTTCTGAGGCTGATG +
Preference number: 2 (lower is better)
Translates to: LPATVHTGMVLSGLGTVGLSRSG*PLLRLM
Trigger: CATCAGCCTCAGAAGTGGCCACCCAGACCTGGACAG...CCCTACTGTCCCCAGTCCAGACAGGACCATACCTGTGTGAACTGTTGCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 90 bp CTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCAGTaGCCAGTGCTGTTCCAGGGCAGTGGGTTCTGTGAAGGCCCAGCC +
Preference number: 2 (lower is better)
Translates to: LLDLFNNLLPGSLVQ*PVLFQGSGFCEGPA
Trigger: GGCTGGGCCTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 90 bp GCATGCTGCATGAAGGCTCTAGAGGAATTGGTGCCAAAGACGCACTaGGAGCATTGCAGTCGTGCCTCACGGCCCTCATCACCTGGAAAC +
Preference number: 2 (lower is better)
Translates to: ACCMKALEELVPKTH*EHCSRASRPSSPGN
Trigger: GTTTCCAGGTGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTGGGTGTAGCAAGGCCTaGGAACATCTTCCGGGCCGT +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGGCSKA*EHLPGR
Trigger: ACGGCCCGGAAGATGTTCTCAGGCCTTGCTACACCC...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCAGTTCTCACAATAACTaGGTCCTTGAACCTCTGCTC +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCSSHNN*VLEPLL
Trigger: GAGCAGAGGTTCAAGGACTCAGTTATTGTGAGAACT...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp GGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTTGCCAGACAGAGGCCAAGAGAGACTGGGGCCATTGTaGCTTTGGGGAAGTTGGTCG +
Preference number: 2 (lower is better)
Translates to: GKVRVISRRVLLPDRGQERLGPL*LWGSWS
Trigger: CGACCAACTTCCCCAAAGGCACAATGGCCCCAGTCT...CTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCTGGATATGACCCTGACCTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGTATCTTCTCGAGGCGTaGCCCAGGGACCCTCAGATG +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKYLLEA*PRDPQM
Trigger: CATCTGAGGGTCCCTGGGGCACGCCTCGAGAAGATA...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp CCCACTCGGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGAAGAATAGGAAGCAGATaGCATAGGGGAAGGAAAGGC +
Preference number: 2 (lower is better)
Translates to: PTRFRWPRTWLASPIHCGRIGSR*HRGRKG
Trigger: GCCTTTCCTTCCCCTATGGCATCTGCTTCCTATTCT...TCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACCGAGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTACTCCGCTGCTGAGGTaGCCAGCAGCTCTTGCAGGA +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGTPLLR*PAALAG
Trigger: TCCTGCAAGAGCTGCTGGCCACCTCAGCAGCGGAGT...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGCCTCGGTGGAGGAGTaGGAGGTCTTCTCATGGAGA +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKASVEE*EVFSWR
Trigger: TCTCCATGAGAAGACCTCCCACTCCTCCACCGAGGC...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTCACAGCAGGCCTCGGTaGAGGAGTGGGAGGTCTTCT +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGHSRPR*RSGRSS
Trigger: AGAAGACCTCCCACTCCTCCACCGAGGCCTGCTGTG...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TGTGGCCTGAGCTTTGCCATCAGAACGATAGGTACCATTCCTTGGAGCTGTTGCGGTGCTCGGCGGTGCTaGCTCATGTGTTCTAGGAGG +
Preference number: 2 (lower is better)
Translates to: CGLSFAIRTIGTIPWSCCGARRC*LMCSRR
Trigger: CCTCCTAGAACACATGAGCCAGCACCGCCGAGCACC...GCAACAGCTCCAAGGAATGGTACCTATCGTTCTGATGGCAAAGCTCAGGCCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp AAAGGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTTGCCAGACAGAGGCCAATCAGTTTTCCAATCCTaGGGTCAGGGCCAGCGTGGC +
Preference number: 2 (lower is better)
Translates to: KGKVRVISRRVLLPDRGQSVFQS*GQGQRG
Trigger: GCCACGCTGGCCCTGACCTCAGGATTGGAAAACTGA...TTGGCCTCTGTCTGGCAAGAGAACCCTTCTGGATATGACCCTGACCTTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGAAGTGCTGTTCTCCCCTaGAATCAGATTGGTCACCAC +
Preference number: 2 (lower is better)
Translates to: SRTGSARADRFKGAISSRSAVLP*NQIGHH
Trigger: GTGGTGACCAATCTGATTGCAGGGGAGAACAGCACT...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR GCA 90 bp GGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGAAACGATCCAGTCGCTCCACAGATaGTTCAGAGTTCACTGTCCA +
Preference number: 2 (lower is better)
Translates to: GSGGPGHGWLARYIVETIQSLHR*FRVHCP
Trigger: TGGACAGTGAACTCTGAAGCATCTGTGGAGCGACTG...GATCGTTTCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp AAGGAAAGGCCAGCTTCCCAAGAGACTGCTGGCCTGAATTTAACAATGGGAAATCCCAGCCGCATTCGCTaGAGGCCAGTGGAGCCAGGT +
Preference number: 2 (lower is better)
Translates to: KERPASQETAGLNLTMGNPSRIR*RPVEPG
Trigger: ACCTGGCTCCACTGGCCTGCAGCGAATGCGGCTGGG...ATTTCCCATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCTGGCCTTTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAGGACAGAGGAGAAATaGGAGGGGATAGGTGGCACA +
Preference number: 2 (lower is better)
Translates to: PCLVARHREVLFSPAIRLRTEEK*EGIGGT
Trigger: TGTGCCACCTATCCCCTCCCATTTCTCCTCTGTCCT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000169488.10
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp AAGGAAAGGCCAGCTTCCCAAGAGACTGCTGGCCTGAATTTAACAATGGGAAATGGGCCCGGGCATGACTaGAGAGGCCAGCCCGAGTAT +
Preference number: 2 (lower is better)
Translates to: KERPASQETAGLNLTMGNGPGHD*RGQPEY
Trigger: ATACTCGGGCTGGCCTCTCCAGTCATGCCCGGGCCC...ATTTCCCATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCTGGCCTTTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTCCCTCATCCTCAGACTaGGGCCATTGTGCCTTTGGG +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGPSSSD*GHCAFG
Trigger: CCCAAAGGCACAATGGCCCCAGTCTGAGGATGAGGG...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTGCCTCGGTGGAGGAGTaGGAGGTCTTCTCATGGAGA +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGASVEE*EVFSWR
Trigger: TCTCCATGAGAAGACCTCCCACTCCTCCACCGAGGC...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTCTGTCCAGGTCTGGGTaGCCACTTCTGAGGCTGATG +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGLSRSG*PLLRLM
Trigger: CATCAGCCTCAGAAGTGGCCACCCAGACCTGGACAG...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp AGAAGGGTTCTCTTGCCAGACAGAGGCCAAGAGAGGCTCAGATTTGCTAAAATATTCGCTGCAGGCCAGTaGAGCCAGGTCAGCTGGGGG +
Preference number: 2 (lower is better)
Translates to: RRVLLPDRGQERLRFAKIFAAGQ*SQVSWG
Trigger: CCCCCAGCTGACCTGGCTCCACTGGCCTGCAGCGAA...TATTTTAGCAAATCTGAGCCTCTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TATGCATCCTGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCACTCCCCCAAATTTGGTaGAGGTCAACTTTGTGGCAG +
Preference number: 2 (lower is better)
Translates to: YASWLVQGWLVRSSKASPLPQIW*RSTLWQ
Trigger: CTGCCACAAAGTTGACCTTCACCAAATTTGGGGGAG...TGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCAGGATGCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp CCAGCTTCCCAAGAGACTGCTGGCCTGAATTTAACAATGGGAAATTTCTCATGCGAGGATCCAAGGCTCTaGCCTGGGCTCCAGGCTGCT +
Preference number: 2 (lower is better)
Translates to: PASQETAGLNLTMGNFSCEDPRL*PGLQAA
Trigger: AGCAGCCTGGAGCCCAGGTCAGAGCCTTGGATCCTC...GCATGAGAAATTTCCCATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TGTGGCCTGAGCTTTGCCATCAGAACGATAGGTACCATTCCTTGGAGCTGTTGCTGTTCCCAAGACCCCTaGACATCAAGGGATGCAGGG +
Preference number: 2 (lower is better)
Translates to: CGLSFAIRTIGTIPWSCCCSQDP*TSRDAG
Trigger: CCCTGCATCCCTTGATGTTCAGGGGTCTTGGGAACA...GCAACAGCTCCAAGGAATGGTACCTATCGTTCTGATGGCAAAGCTCAGGCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGAGTTCTCACAATAACTaGGTCCTTGAACCTCTGCTC +
Preference number: 2 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKSSHNN*VLEPLL
Trigger: GAGCAGAGGTTCAAGGACTCAGTTATTGTGAGAACT...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCTTTGAGGTTTTGGCTTaGTCCTTTGGAAACGGAAAA +
Preference number: 2 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCFEVLA*SFGNGK
Trigger: TTTTCCGTTTCCAAAGGAGCAAGCCAAAACCTCAAA...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp TATGCATCCTGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCACTAGACACAGGGAAGTaGTGTTCTCCCCTGCAATCA +
Preference number: 2 (lower is better)
Translates to: YASWLVQGWLVRSSKASPLDTGK*CSPLQS
Trigger: TGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAG...TGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCAGGATGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp TCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACGATAGGAGATGCTGCACTCGATaGAAGGAAACACAGCTGGCT +
Preference number: 2 (lower is better)
Translates to: SGGGSYDLWPELCHQNDRRCCTR*KETQLA
Trigger: AGCCAGCTGTGTTTCCTTGCATCGAGTGCAGCATCT...CCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp AAGAACTTCACTTCACCCTGGTGGTGCAAGAACTTTCTAGAGCCCTTGAGCTTGGAACCTCTGCTCAGATaGGGTACCCTCCCTGGCCTC +
Preference number: 2 (lower is better)
Translates to: KNFTSPWWCKNFLEPLSLEPLLR*GTLPGL
Trigger: GAGGCCAGGGAGGGTACCCCATCTGAGCAGAGGTTC...CAAGCTCAAGGGCTCTAGAAAGTTCTTGCACCACCAGGGTGAAGTGAAGTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 90 bp CACTCGATGCAAGGAAACACAGCTGGCTCCTCTTCCTCTTCTTCATaGCTGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGG +
Preference number: 2 (lower is better)
Translates to: HSMQGNTAGSSSSSS*LSTPPATSCNSSHR
Trigger: CCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAGAAGAGGAAGAGGAGCCAGCTGTGTTTCCTTGCATCGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TCTCATGCCTGGCTGCTGATAGTCTGGACCAAAGGCAAGGTCAGGGTCATATCCAGTGAACACAGGTATTaGGGCCTGAGGAGTCTCCAT +
Preference number: 2 (lower is better)
Translates to: SHAWLLIVWTKGKVRVISSEHRY*GLRSLH
Trigger: ATGGAGACTCCTCAGGCCTCAATACCTGTGTTCACT...GGATATGACCCTGACCTTGCCTTTGGTCCAGACTATCAGCAGCCAGGCATGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTCTGAACATCAAGGGATaGAGGGAAGGGACCCAGAAG +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGLNIKG*REGTQK
Trigger: CTTCTGGGTCCCTTCCCTGCATCCCTTGATGTTCAG...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGTGCAGCTTGGCATGCTaGATGAAGGCTCTAGAGGAA +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKCSLAC*MKALEE
Trigger: TTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCA...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAATTTGGCTTGCTCCTTTaGAAACGGAAAAGAAAGATG +
Preference number: 2 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQFGLLL*KRKRKM
Trigger: CATCTTTCTTTTCCGTTTCCAAAGGAGCAAGCCAAA...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp AACTGCTTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCGCATTGTGGGCTCAGTaGGAGCTCCCAAGCCCTAGG +
Preference number: 2 (lower is better)
Translates to: NCFSFWISSIIFSREAWCALWAQ*ELPSPR
Trigger: CCTAGGGCTTGGGAGCTCCCACTGAGCCCACAATGC...GCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAAGCAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGCAACAAGAATTTCCGTaGCATTGTGGGCTCAGTGGG +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKQQEFP*HCGLSG
Trigger: CCCACTGAGCCCACAATGCCACGGAAATTCTTGTTG...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp TCTCATGCCTGGCTGCTGATAGTCTGGACCAAAGGCAAGGTCAGGGTCATATCCGCAAGGAAACACAGCTaGCTCCTCTTCCTCTTCTTC +
Preference number: 2 (lower is better)
Translates to: SHAWLLIVWTKGKVRVISARKHS*LLFLFF
Trigger: GAAGAAGAGGAAGAGGAGCCAGCTGTGTTTCCTTGC...GGATATGACCCTGACCTTGCCTTTGGTCCAGACTATCAGCAGCCAGGCATGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TGTGGCCTGAGCTTTGCCATCAGAACGATAGGTACCATTCCTTGGAGCTGTTGCGCAGCATCTCCCTCTTaGTCTCCACTCTCATGTGTT +
Preference number: 2 (lower is better)
Translates to: CGLSFAIRTIGTIPWSCCAASPS*SPLSCV
Trigger: AACACATGAGAGTGGAGATCAAGAGGGAGATGCTGC...GCAACAGCTCCAAGGAATGGTACCTATCGTTCTGATGGCAAAGCTCAGGCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp AAGAACTTCACTTCACCCTGGTGGTGCAAGAACTTTCTAGAGCCCTTGAGCTTGGGACAGCTCAAAGGATaGACCTCCTCCCCTCTTGGA +
Preference number: 2 (lower is better)
Translates to: KNFTSPWWCKNFLEPLSLGQLKG*TSSPLG
Trigger: TCCAAGAGGGGAGGAGGTTCATCCTTTGAGCTGTCC...CAAGCTCAAGGGCTCTAGAAAGTTCTTGCACCACCAGGGTGAAGTGAAGTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp TCTCTGCAGGTGGACAGTGCTTTTGTTTCTATTGCGCTGTATAGAATAGGAAGCGGGGACAGTAGGGGCTaGAGTCGCTCCACAGATGCT +
Preference number: 2 (lower is better)
Translates to: SLQVDSAFVSIALYRIGSGDSRG*SRSTDA
Trigger: AGCATCTGTGGAGCGACTGCAGCCCCTACTGTCCCC...GCTTCCTATTCTATACAGCGCAATAGAAACAAAAGCACTGTCCACCTGCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp AAGGAAAGGCCAGCTTCCCAAGAGACTGCTGGCCTGAATTTAACAATGGGAAATGAAGCCTGGTGCAGTTaGCAGTGCTGTTCCAGGGCA +
Preference number: 2 (lower is better)
Translates to: KERPASQETAGLNLTMGNEAWCS*QCCSRA
Trigger: TGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTC...ATTTCCCATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCTGGCCTTTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp AGAAGGGTTCTCTTGCCAGACAGAGGCCAAGAGAGGCTCAGATTTGCTAAAATATCAGTTACACCCATCTaGCGCAGGTGGGAGCGTGCA +
Preference number: 2 (lower is better)
Translates to: RRVLLPDRGQERLRFAKISVTPI*RRWERA
Trigger: TGCACGCTCCCACCTGCGCCAGATGGGTGTAACTGA...TATTTTAGCAAATCTGAGCCTCTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGCGTGAAAATAGATATTaGTGGGGCAAGAGGGAACAG +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKRENRY*WGKREQ
Trigger: CTGTTCCCTCTTGCCCCATCAATATCTATTTTCACG...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp CTTCATTGCTGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGGTATGGGAGATCAGAGTAGATaGGGAAAGTTCTCTGGGCCT +
Preference number: 2 (lower is better)
Translates to: LHCCPLHQLLPATVHTGMGDQSR*GKFSGP
Trigger: AGGCCCAGAGAACTTTCCTCATCTACTCTGATCTCC...CATACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR TCA 90 bp CAAGAACTTTCTAGAGCCCTTGAGCTTGGCATAAGGTTTCATAGTTCTCACAATGAGGATCCAAGGCTCTaGCCTGGGCTCCAGGCTGCT +
Preference number: 2 (lower is better)
Translates to: QELSRALELGIRFHSSHNEDPRL*PGLQAA
Trigger: AGCAGCCTGGAGCCCAGGTCAGAGCCTTGGATCCTC...ATTGTGAGAACTATGAAACCTTATGCCAAGCTCAAGGGCTCTAGAAAGTTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp TCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACGATAGGTCTTCACTCCAAAGATaGCTCTTGTCTTCCATTCTC +
Preference number: 2 (lower is better)
Translates to: SGGGSYDLWPELCHQNDRSSLQR*LLSSIL
Trigger: GAGAATGGAAGACAAGAGTCATCTTTGGAGTGAAGA...CCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp AAGAACTTCACTTCACCCTGGTGGTGCAAGAACTTTCTAGAGCCCTTGAGCTTGCTGAACATCAAGGGATaGAGGGAAGGGACCCAGAAG +
Preference number: 2 (lower is better)
Translates to: KNFTSPWWCKNFLEPLSLLNIKG*REGTQK
Trigger: CTTCTGGGTCCCTTCCCTGCATCCCTTGATGTTCAG...CAAGCTCAAGGGCTCTAGAAAGTTCTTGCACCACCAGGGTGAAGTGAAGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAATTGATAACCAAAAGGTaGCCACTGAAAAGGTTAAAA +
Preference number: 2 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQLITKR*PLKRLK
Trigger: TTTTAACCTTTTCAGTGGCCACCTTTTGGTTATCAA...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTTGCCAGACAGAGGCCAAGAGAACTTCACTTCACCCTaGTGGTGCAAGAACTTTCTA +
Preference number: 2 (lower is better)
Translates to: GKVRVISRRVLLPDRGQENFTSP*WCKNFL
Trigger: TAGAAAGTTCTTGCACCACCAGGGTGAAGTGAAGTT...CTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCTGGATATGACCCTGACCTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp AACTGCTTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCTTCACTGTCCAGGTCTaGGTGGCCACTTCTGAGGCT +
Preference number: 2 (lower is better)
Translates to: NCFSFWISSIIFSREAWCFTVQV*VATSEA
Trigger: AGCCTCAGAAGTGGCCACCCAGACCTGGACAGTGAA...GCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAAGCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 90 bp TCCTCTAGGTCCTCTCTGGTACCCATAACTTCCATGTCCAAGGTCTaGGGAGTGTTATCCACTGGCACAATTACCCTCCTAAAGGAAGTG +
Preference number: 2 (lower is better)
Translates to: SSRSSLVPITSMSKV*GVLSTGTITLLKEV
Trigger: CACTTCCTTTAGGAGGGTAATTGTGCCAGTGGATAACACTCCCAAGACCTTGGACATGGAAGTTATGGGTACCAGAGAGGACCTAGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTTTGAGGTTTTGGCTTaGTCCTTTGGAAACGGAAAA +
Preference number: 2 (lower is better)
Translates to: PCLVARHREVLFSPAIRLFEVLA*SFGNGK
Trigger: TTTTCCGTTTCCAAAGGAGCAAGCCAAAACCTCAAA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000169488.10
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp GGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACGTGTGTGTTTGCCTGTaGGTGAAAATAGATATTGAT +
Preference number: 2 (lower is better)
Translates to: GCSGGGSYDLWPELCHQNVCVCL*VKIDID
Trigger: ATCAATATCTATTTTCACGCACAGGCAAACACACAC...GTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTTTGGCTTGCTCCTTTaGAAACGGAAAAGAAAGATG +
Preference number: 2 (lower is better)
Translates to: PCLVARHREVLFSPAIRLFGLLL*KRKRKM
Trigger: CATCTTTCTTTTCCGTTTCCAAAGGAGCAAGCCAAA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000169488.10
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTAGATGTAGCCCTGCCTaGTTGCTAGACACAGGGAAG +
Preference number: 2 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIRCSPA*LLDTGK
Trigger: CTTCCCTGTGTCTAGCAACCAGGCAGGGCTACATCT...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CAA 90 bp GCCCCTGTTCATCTGTATCTTGGAGCCAATCAAACTTGTGGTGGCTaGGAGAGTATTTCTCTAAGAACTTCACTTCACCCTGGTGGTGCA +
Preference number: 2 (lower is better)
Translates to: APVHLYLGANQTCGG*ESISLRTSLHPGGA
Trigger: TGCACCACCAGGGTGAAGTGAAGTTCTTAGAGAAATACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAGATGAACAGGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp CCAGCTTCCCAAGAGACTGCTGGCCTGAATTTAACAATGGGAAATTTCTCATGCACTTCACCCTGGTGGTaGAAGAACTTTCTAGAGCCC +
Preference number: 2 (lower is better)
Translates to: PASQETAGLNLTMGNFSCTSPWW*KNFLEP
Trigger: GGGCTCTAGAAAGTTCTTGCACCACCAGGGTGAAGT...GCATGAGAAATTTCCCATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CCA 90 bp TGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGGTATGGTCCTGTCTAACTTCACTTCACCCTaGTGGTGCAAGAACTTTCTA +
Preference number: 2 (lower is better)
Translates to: CPLHQLLPATVHTGMVLSNFTSP*WCKNFL
Trigger: TAGAAAGTTCTTGCACCACCAGGGTGAAGTGAAGTT...AGACAGGACCATACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp CCAGCTTCCCAAGAGACTGCTGGCCTGAATTTAACAATGGGAAATTTCTCATGCAAGGAACTCCTTTGGTaGGTTGGACTTCTTGGTCAG +
Preference number: 2 (lower is better)
Translates to: PASQETAGLNLTMGNFSCKELLW*VGLLGQ
Trigger: CTGACCAAGAAGTCCAACTCACCAAAGGAGTTCCTT...GCATGAGAAATTTCCCATTGTTAAATTCAGGCCAGCAGTCTCTTGGGAAGCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp AACTGCTTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCCTTCCTCTTCTTCATTaGTGTCCACTCCACCAGCTA +
Preference number: 2 (lower is better)
Translates to: NCFSFWISSIIFSREAWCLPLLH*CPLHQL
Trigger: TAGCTGGTGGAGTGGACAGCAATGAAGAAGAGGAAG...GCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAAGCAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR TCA 90 bp CTGTATCTTGGAGCCAATCAAACTTGTGGTGGCTTGGAGAGTATTTCTCTAAGACTCCCCCAAATTTGGTaGAGGTCAACTTTGTGGCAG +
Preference number: 2 (lower is better)
Translates to: LYLGANQTCGGLESISLRLPQIW*RSTLWQ
Trigger: CTGCCACAAAGTTGACCTTCACCAAATTTGGGGGAG...TCTTAGAGAAATACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR GCA 90 bp CTTCATTGCTGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGGTATGTTTGAGGTTTTGGCTTaGTCCTTTGGAAACGGAAAA +
Preference number: 2 (lower is better)
Translates to: LHCCPLHQLLPATVHTGMFEVLA*SFGNGK
Trigger: TTTTCCGTTTCCAAAGGAGCAAGCCAAAACCTCAAA...CATACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTGTGTGTGTTTGCCTGTaGGTGAAAATAGATATTGAT +
Preference number: 2 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGVCVCL*VKIDID
Trigger: ATCAATATCTATTTTCACGCACAGGCAAACACACAC...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CAAGAACTTTCTAGAGCCCTTGAGCTTGGCATAAGGTTTCATAGTTCTCACAATAGGACAGAGGAGAAATaGGAGGGGATAGGTGGCACA +
Preference number: 2 (lower is better)
Translates to: QELSRALELGIRFHSSHNRTEEK*EGIGGT
Trigger: TGTGCCACCTATCCCCTCCCATTTCTCCTCTGTCCT...ATTGTGAGAACTATGAAACCTTATGCCAAGCTCAAGGGCTCTAGAAAGTTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGTTGATAACCAAAAGGTaGCCACTGAAAAGGTTAAAA +
Preference number: 2 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKLITKR*PLKRLK
Trigger: TTTTAACCTTTTCAGTGGCCACCTTTTGGTTATCAA...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR GCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTTTGAGGTTTTGGCTTaGTCCTTTGGAAACGGAAAA +
Preference number: 2 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIFEVLA*SFGNGK
Trigger: TTTTCCGTTTCCAAAGGAGCAAGCCAAAACCTCAAA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR TCA 72 bp CTCCCGGCCCAGGGGACTTGGGGGCAACTCCGCTGCTaGGGTGGCCAGCAGCTCTTGCAGGATGTTGATGGG +
Preference number: 3 (lower is better)
Translates to: LPAQGTWGQLRC*GGQQLLQDVDG
Trigger: CCCATCAACATCCTGCAAGAGCTGCTGGCCACCTCAGCAGCGGAGTTGCCCCCAAGTCCCCTGGGCCGGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR GCA 72 bp TCTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGGGGATaGTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAG +
Preference number: 3 (lower is better)
Translates to: SQLGLLRRQLWG*SGGGSYDLWPE
Trigger: CTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCTGAGGAGCCCGAGCTGAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp GTGAGGTCCTCAAAGGCCTCTCCAACCTCCTCCCAGTaGGCGTGGTGGGCGTGGACTAGCCTCGTGTGCTCC +
Preference number: 3 (lower is better)
Translates to: VRSSKASPTSSQ*AWWAWTSLVCS
Trigger: GGAGCACACGAGGCTAGTCCACGCCCACCACGCCCACTGGGAGGAGGTTGGAGAGGCCTTTGAGGACCTCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp CTCACAGGTGGTCAGGCTCTGGGCATCTCCGTAGATTaGCCCAGGGTCCTCAGCCCAGGTAGGCGGGAAGGG +
Preference number: 3 (lower is better)
Translates to: LTGGQALGISVD*PRVLSPGRREG
Trigger: CCCTTCCCGCCTACCTGGGCTGAGGACCCTGGGCCAATCTACGGAGATGCCCAGAGCCTGACCACCTGTGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGGTGCATCCCGGCCCAGGGGACTaGGGGGCAACTCCGCTGCTG +
Preference number: 3 (lower is better)
Translates to: LGPLLGVCSDPVSHPKVHPGPGD*GATPLL
Trigger: CAGCAGCGGAGTTGCCCCCAAGTCCCCTGGGCCGGG...ATGCACCTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp GCAGGAAGTCCAGCGGGTGGGTGCTTCTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGCCAAAGACGCACTaGGAGCATTGCAGTCGTGCC +
Preference number: 3 (lower is better)
Translates to: AGSPAGGCFSARAPQAAAVPKTH*EHCSRA
Trigger: GGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCAC...AGCTGCCGCCTGAGGAGCCCGAGCTGAGAAGCACCCACCCGCTGGACTTCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 72 bp GCAGTTGCCAGTGCTGTTCCAGGGCAGTGGGTTCTGTaGAGGCCCAGCCGCATTCGCTGCAGGCCAGTGGAG +
Preference number: 3 (lower is better)
Translates to: AVASAVPGQWVL*RPSRIRCRPVE
Trigger: CTCCACTGGCCTGCAGCGAATGCGGCTGGGCCTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp TCAAAGGCCTCTCCAACCTCCTCCCAGTGGGCGTGGTaGGCGTGGACTAGCCTCGTGTGCTCCCTGAGCAGA +
Preference number: 3 (lower is better)
Translates to: SKASPTSSQWAW*AWTSLVCSLSR
Trigger: TCTGCTCAGGGAGCACACGAGGCTAGTCCACGCCCACCACGCCCACTGGGAGGAGGTTGGAGAGGCCTTTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp GGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCGTCAGTGGGGCCTTCTaGAGGAGTGGAGAGCTGGAT +
Preference number: 3 (lower is better)
Translates to: GGSCGDARVVAAMTCGLSVSGAF*RSGELD
Trigger: ATCCAGCTCTCCACTCCTCAAGAAGGCCCCACTGAC...GCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGCCCGGCCCAGGGGACTaGGGGGCAACTCCGCTGCTG +
Preference number: 3 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKPGPGD*GATPLL
Trigger: CAGCAGCGGAGTTGCCCCCAAGTCCCCTGGGCCGGG...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGGGGTGGGTCAGGCCCTaGGCTGAGAAGCCAGGAGGT +
Preference number: 3 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKGWVRP*AEKPGG
Trigger: ACCTCCTGGCTTCTCAGCCAAGGGCCTGACCCACCC...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR TCA 72 bp GTCCAGGTCTGGGTGGCCACTTCTGAGGCTGATGTGTaGAGACCCCACTCAGAAGGCTGGGCCACCTGCCCA +
Preference number: 3 (lower is better)
Translates to: VQVWVATSEADV*RPHSEGWATCP
Trigger: TGGGCAGGTGGCCCAGCCTTCTGAGTGGGGTCTTCACACATCAGCCTCAGAAGTGGCCACCCAGACCTGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 72 bp ACCCCTGAAAGGTTCCGTGGCCTGCCGGCTGGGCAGTaGCCCACGCACATGCAGCTTGGCATGCTGCATGAA +
Preference number: 3 (lower is better)
Translates to: TPERFRGLPAGQ*PTHMQLGMLHE
Trigger: TTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACCTTTCAGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp TCCGTGGCCTGCCGGCTGGGCAGTGACCCACGCACATaGAGCTTGGCATGCTGCATGAAGGCTCTAGAGGAA +
Preference number: 3 (lower is better)
Translates to: SVACRLGSDPRT*SLACCMKALEE
Trigger: TTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGAGGCCATCTCCGTAGATaGGCCCAGGGTCCTCAGCCC +
Preference number: 3 (lower is better)
Translates to: SRTGSARADRFKGAISSRGHLRR*AQGPQP
Trigger: GGGCTGAGGACCCTGGGCCAATCTACGGAGATGGCC...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR GCA 72 bp GGGGGCAACTCCGCTGCTGAGGTGGCCAGCAGCTCTTaGAGGATGTTGATGGGTGAGATGGTGAGTTCCCAG +
Preference number: 3 (lower is better)
Translates to: GGNSAAEVASSS*RMLMGEMVSSQ
Trigger: CTGGGAACTCACCATCTCACCCATCAACATCCTGCAAGAGCTGCTGGCCACCTCAGCAGCGGAGTTGCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CCA 72 bp TTCACCACTGTCAGCTGCCCTTCCAGCTTCAAGCCCTaGTTCTCCCCCAGCACTTCGGCCAACCAGGGACAG +
Preference number: 3 (lower is better)
Translates to: FTTVSCPSSFKP*FSPSTSANQGQ
Trigger: CTGTCCCTGGTTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACAGTGGTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp AGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGAAGCACCGTGGCATGTaGTGGTCGTTTGACTTGGGA +
Preference number: 3 (lower is better)
Translates to: RRQLWGCSGGGSYDLWPEKHRGM*WSFDLG
Trigger: TCCCAAGTCAAACGACCACAACATGCCACGGTGCTT...CTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAACTCAGACTGGGGCCATaGTGCCTTTGGGGAAGTTGG +
Preference number: 3 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQLRLGP*CLWGSW
Trigger: CCAACTTCCCCAAAGGCACAATGGCCCCAGTCTGAG...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CCCACTCGGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGACAGGCTGCTTCTGTCTaGGTCCTCCCCAAACTGTGG +
Preference number: 3 (lower is better)
Translates to: PTRFRWPRTWLASPIHCGQAASV*VLPKLW
Trigger: CCACAGTTTGGGGAGGACCAAGACAGAAGCAGCCTG...TCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACCGAGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp CCCACTCGGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGACCACGCACATGCAGCTaGGCATGCTGCATGAAGGCT +
Preference number: 3 (lower is better)
Translates to: PTRFRWPRTWLASPIHCGPRTCS*ACCMKA
Trigger: AGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGG...TCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACCGAGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp TGTGTTTTCCTCAGAACACAGGCCATCTCCGTAGATTaGCCCAGGGTCCTCAGCCCAGGTAGGCGGGAAGGG +
Preference number: 3 (lower is better)
Translates to: CVFLRTQAISVD*PRVLSPGRREG
Trigger: CCCTTCCCGCCTACCTGGGCTGAGGACCCTGGGCCAATCTACGGAGATGGCCTGTGTTCTGAGGAAAACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR CCA 72 bp GCTCAGATGGGGTACCCTCCCTGGCCTCCTGGACCATaGGATGTTCCCAAGACCCCTGAACATCAAGGGATG +
Preference number: 3 (lower is better)
Translates to: AQMGYPPWPPGP*DVPKTPEHQGM
Trigger: CATCCCTTGATGTTCAGGGGTCTTGGGAACATCCCATGGTCCAGGAGGCCAGGGAGGGTACCCCATCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCAGGCAGCTGTCAGCTTaGAGCTCTTCCAAGCTAGGA +
Preference number: 3 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCRQLSA*SSSKLG
Trigger: TCCTAGCTTGGAAGAGCTCAAAGCTGACAGCTGCCT...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CTCAGCTCGGGCTCCTCAGGCGGCAGCTGTGGGGATGCTCGGGTGGTGGCAGCTTTTTGGCTTGCTCCTTaGGAAACGGAAAAGAAAGAT +
Preference number: 3 (lower is better)
Translates to: LSSGSSGGSCGDARVVAAFWLAP*ETEKKD
Trigger: ATCTTTCTTTTCCGTTTCCAAAGGAGCAAGCCAAAA...AGCTGCCACCACCCGAGCATCCCCACAGCTGCCGCCTGAGGAGCCCGAGCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAAAGGCAGCTGTCAGCTTaGAGCTCTTCCAAGCTAGGA +
Preference number: 3 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQRQLSA*SSSKLG
Trigger: TCCTAGCTTGGAAGAGCTCAAAGCTGACAGCTGCCT...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAAGCAGGAGGCTCTTTTTaGATGAGGCACAGCTTGGAC +
Preference number: 3 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQAGGSF*MRHSLD
Trigger: GTCCAAGCTGTGCCTCATCAAAAAAGAGCCTCCTGC...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCTTCTGTTGCAGGTCATaGACTTCCTCACCACCACGA +
Preference number: 3 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCFCCRS*TSSPPR
Trigger: TCGTGGTGGTGAGGAAGTCAATGACCTGCAACAGAA...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp TTGGTGCCAAAGACGCACTTGGAGCATTGCAGTCGTGCCTCACGGCCCTCATCAGAACCTCCTCCCCTCTaGGAGGGTAGAGTCAGGAGT +
Preference number: 3 (lower is better)
Translates to: LVPKTHLEHCSRASRPSSEPPPL*EGRVRS
Trigger: ACTCCTGACTCTACCCTCCAAGAGGGGAGGAGGTTC...TGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGTCCAGAAGGGTTCTCTaGCCAGACAGAGGCCAAGAG +
Preference number: 3 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKSRRVL*PDRGQE
Trigger: CTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCTGGA...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp CGGCTGGGCAGTGACCCACGCACATGCAGCTTGGCATaGTGCATGAAGGCTCTAGAGGAATTGGTGCCAAAG +
Preference number: 3 (lower is better)
Translates to: RLGSDPRTCSLA*CMKALEELVPK
Trigger: CTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp AGGATTCTTGGGTGTAGGGGATCCTGCCAGAGTCAGTaGGGCCTTCTTGAGGAGTGGAGAGCTGGATGGGTG +
Preference number: 3 (lower is better)
Translates to: RILGCRGSCQSQ*GLLEEWRAGWV
Trigger: CACCCATCCAGCTCTCCACTCCTCAAGAAGGCCCCACTGACTCTGGCAGGATCCCCTACACCCAAGAATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAAAGCTCTTGCAGGATGTaGATGGGTGAGATGGTGAGT +
Preference number: 3 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQSSCRM*MGEMVS
Trigger: ACTCACCATCTCACCCATCAACATCCTGCAAGAGCT...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGGCAGGAGGCTCTTTTTaGATGAGGCACAGCTTGGAC +
Preference number: 3 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKAGGSF*MRHSLD
Trigger: GTCCAAGCTGTGCCTCATCAAAAAAGAGCCTCCTGC...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR GCA 72 bp AGGTATGGTCCTGTCTGGACTGGGGACAGTAGGGGCTaGAGTCGCTCCACAGATGCTTCAGAGTTCACTGTC +
Preference number: 3 (lower is better)
Translates to: RYGPVWTGDSRG*SRSTDASEFTV
Trigger: GACAGTGAACTCTGAAGCATCTGTGGAGCGACTGCAGCCCCTACTGTCCCCAGTCCAGACAGGACCATACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp CTGGGCAGTGACCCACGCACATGCAGCTTGGCATGCTaGATGAAGGCTCTAGAGGAATTGGTGCCAAAGACG +
Preference number: 3 (lower is better)
Translates to: LGSDPRTCSLAC*MKALEELVPKT
Trigger: CGTCTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTCCAGTGCTCAGCACCTaGGCCAGGGCTTTTGGGCTA +
Preference number: 3 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGPVLST*ARAFGL
Trigger: TAGCCCAAAAGCCCTGGCCAAGGTGCTGAGCACTGG...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp GACTTGTGGCCTGAGCTTTGCCATCAGAACGATAGGTACCATTCCTTGGAGCTGCCAGTGCTCAGCACCTaGGCCAGGGCTTTTGGGCTA +
Preference number: 3 (lower is better)
Translates to: DLWPELCHQNDRYHSLELPVLST*ARAFGL
Trigger: TAGCCCAAAAGCCCTGGCCAAGGTGCTGAGCACTGG...CAGCTCCAAGGAATGGTACCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CTAACATCTAAGACTGGGCTGCCACCCCTGAAAGGTTCCGTGGCCTGCCGGCTGACAATAACTGAGTCCTaGAACCTCTGCTCAGATGGG +
Preference number: 3 (lower is better)
Translates to: LTSKTGLPPLKGSVACRLTITES*NLCSDG
Trigger: CCCATCTGAGCAGAGGTTCAAGGACTCAGTTATTGT...CAGCCGGCAGGCCACGGAACCTTTCAGGGGTGGCAGCCCAGTCTTAGATGTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 72 bp GCATCTTGGAAAGTCTGCTTCAACTCAAGGGCTGGCTaGGGGATGAGGCTAGGGATGGCTAGGGGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: ASWKVCFNSRAG*GMRLGMARGGK
Trigger: CTTTCCACCCCTAGCCATCCCTAGCCTCATCCCTCAGCCAGCCCTTGAGTTGAAGCAGACTTTCCAAGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp CTAGAGGAATTGGTGCCAAAGACGCACTTGGAGCATTaGAGTCGTGCCTCACGGCCCTCATCACCTGGAAAC +
Preference number: 3 (lower is better)
Translates to: LEELVPKTHLEH*SRASRPSSPGN
Trigger: GTTTCCAGGTGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAATTCCTCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp ACCACAAAACTCACACCGGATGTCACGCACTGGCTCTaGCCGAGACAGGTTCAAGGGTGCCATATCTTCTCG +
Preference number: 3 (lower is better)
Translates to: TTKLTPDVTHWL*PRQVQGCHIFS
Trigger: CGAGAAGATATGGCACCCTTGAACCTGTCTCGGGCAGAGCCAGTGCGTGACATCCGGTGTGAGTTTTGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR CCA 72 bp ACAATTACCCTCCTAAAGGAAGTGACAGTCGGGGGCTaGGCAGGAAGGTCCAGGTGCAACCCTGTATCCTTC +
Preference number: 3 (lower is better)
Translates to: TITLLKEVTVGG*AGRSRCNPVSF
Trigger: GAAGGATACAGGGTTGCACCTGGACCTTCCTGCCCAGCCCCCGACTGTCACTTCCTTTAGGAGGGTAATTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp CCACAGATGCTTCAGAGTTCACTGTCCAGGTCTGGGTaGCCACTTCTGAGGCTGATGTGTGAAGACCCCACT +
Preference number: 3 (lower is better)
Translates to: PQMLQSSLSRSG*PLLRLMCEDPT
Trigger: AGTGGGGTCTTCACACATCAGCCTCAGAAGTGGCCACCCAGACCTGGACAGTGAACTCTGAAGCATCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp CTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTTGTaGCCTGAGCTTTGCCATCAGAACGATAGGTACCAT +
Preference number: 3 (lower is better)
Translates to: LWGCSGGGSYDL*PELCHQNDRYH
Trigger: ATGGTACCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp AGTAGGGGCATTTCCGCTCCTCATGCTTTAGTGCCATaGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCA +
Preference number: 3 (lower is better)
Translates to: SRGISAPHALVP*LGPLLGVCSDP
Trigger: TGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGGCACTAAAGCATGAGGAGCGGAAATGCCCCTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp AAGCAGGCACCGCAGACCTCACAGGTGGTCAGGCTCTGGGCCTTGAGGTCTGGCTTTTGGCTTGCTCCTTaGGAAACGGAAAAGAAAGAT +
Preference number: 3 (lower is better)
Translates to: KQAPQTSQVVRLWALRSGFWLAP*ETEKKD
Trigger: ATCTTTCTTTTCCGTTTCCAAAGGAGCAAGCCAAAA...GCCAGACCTCAAGGCCCAGAGCCTGACCACCTGTGAGGTCTGCGGTGCCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
3UTR-3UTR CAA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTGTCAGTGGGGCCTTCTaGAGGAGTGGAGAGCTGGAT +
Preference number: 3 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGVSGAF*RSGELD
Trigger: ATCCAGCTCTCCACTCCTCAAGAAGGCCCCACTGAC...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGACAATAACTGAGTCCTaGAACCTCTGCTCAGATGGG +
Preference number: 3 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKTITES*NLCSDG
Trigger: CCCATCTGAGCAGAGGTTCAAGGACTCAGTTATTGT...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp GGCAGTGACCCACGCACATGCAGCTTGGCATGCTGCATGAAGGCTCTAGAGGAATCTTCCTCTTCTTCATaGCTGTCCACTCCACCAGCT +
Preference number: 3 (lower is better)
Translates to: GSDPRTCSLACCMKALEESSSSS*LSTPPA
Trigger: AGCTGGTGGAGTGGACAGCAATGAAGAAGAGGAAGA...TTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp GGATGCTCGGGTGGTGGCAGCTATGACTTGTGGCCTGAGCTTTGCCATCAGAACAAGGCTCTAGAGGAATaGGTGCCAAAGACGCACTTG +
Preference number: 3 (lower is better)
Translates to: GCSGGGSYDLWPELCHQNKALEE*VPKTHL
Trigger: CAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTT...GTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp TCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCAGTTaGCAGTGCTGTTCCAGGGCAGTGGGTTCTGTGAAG +
Preference number: 3 (lower is better)
Translates to: SSIIFSREAWCS*QCCSRAVGSVK
Trigger: CTTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGAGAAGATTATTGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp GGCAGGACAGCTCAAAGGATGAACCTCCTCCCCTCTTaGAGGGTAGAGTCAGGAGTGACTAATGGTTCCAGT +
Preference number: 3 (lower is better)
Translates to: GRTAQRMNLLPS*RVESGVTNGSS
Trigger: ACTGGAACCATTAGTCACTCCTGACTCTACCCTCCAAGAGGGGAGGAGGTTCATCCTTTGAGCTGTCCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGAAGCACCGTGGCATGTaGTGGTCGTTTGACTTGGGA +
Preference number: 3 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKKHRGM*WSFDLG
Trigger: TCCCAAGTCAAACGACCACAACATGCCACGGTGCTT...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp GGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGAAACGATCAAGCCAGGAGGTGATTaGATGGCTTTGTTGACAGCA +
Preference number: 3 (lower is better)
Translates to: GSGGPGHGWLARYIVETIKPGGD*MALLTA
Trigger: TGCTGTCAACAAAGCCATCAAATCACCTCCTGGCTT...GATCGTTTCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp CCTGAGCAGACTCTTGCTAGGTGCTGTGAAACCACAGTGAACACAGGTATTGAGGAACCTCCTCCCCTCTaGGAGGGTAGAGTCAGGAGT +
Preference number: 3 (lower is better)
Translates to: PEQTLARCCETTVNTGIEEPPPL*EGRVRS
Trigger: ACTCCTGACTCTACCCTCCAAGAGGGGAGGAGGTTC...CTCAATACCTGTGTTCACTGTGGTTTCACAGCACCTAGCAAGAGTCTGCTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp CTTCATTGCTGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGGTATGCAGGCTGCTTCTGTCTaGGTCCTCCCCAAACTGTGG +
Preference number: 3 (lower is better)
Translates to: LHCCPLHQLLPATVHTGMQAASV*VLPKLW
Trigger: CCACAGTTTGGGGAGGACCAAGACAGAAGCAGCCTG...CATACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp CTGATAGTCTGGACCAAAGGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTTGCCACGCACATGCAGCTaGGCATGCTGCATGAAGGCT +
Preference number: 3 (lower is better)
Translates to: LIVWTKGKVRVISRRVLLPRTCS*ACCMKA
Trigger: AGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGG...CAAGAGAACCCTTCTGGATATGACCCTGACCTTGCCTTTGGTCCAGACTATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 72 bp TGCTGTGAAACCACAGTGAACACAGGTATTGAGGCCTaGGGAGTCTCCATAGGAGGGATAGACGAGGGTGCT +
Preference number: 3 (lower is better)
Translates to: CCETTVNTGIEA*GVSIGGIDEGA
Trigger: AGCACCCTCGTCTATCCCTCCTATGGAGACTCCTCAGGCCTCAATACCTGTGTTCACTGTGGTTTCACAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTGTAGCCCTGCCTGGTaGCTAGACACAGGGAAGTGC +
Preference number: 3 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDICSPAW*LDTGKC
Trigger: GCACTTCCCTGTGTCTAGCAACCAGGCAGGGCTACA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTAGCTCTTGCAGGATGTaGATGGGTGAGATGGTGAGT +
Preference number: 3 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGSSCRM*MGEMVS
Trigger: ACTCACCATCTCACCCATCAACATCCTGCAAGAGCT...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR GCA 72 bp AAGGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTTaGCAGACAGAGGCCAAGAGAGGCTCAGATTTGCTA +
Preference number: 3 (lower is better)
Translates to: KARSGSYPEGFS*QTEAKRGSDLL
Trigger: TAGCAAATCTGAGCCTCTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCTGGATATGACCCTGACCTTGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp TCTCTGCAGGTGGACAGTGCTTTTGTTTCTATTGCGCTGTATAGAATAGGAAGCGTGCCAAAGACGCACTaGGAGCATTGCAGTCGTGCC +
Preference number: 3 (lower is better)
Translates to: SLQVDSAFVSIALYRIGSVPKTH*EHCSRA
Trigger: GGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCAC...GCTTCCTATTCTATACAGCGCAATAGAAACAAAAGCACTGTCCACCTGCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp TCTTCTTCATTGCTGTCCACTCCACCAGCTACTTCCTaGAACAGTTCACACAGGTATGGTCCTGTCTGGACT +
Preference number: 3 (lower is better)
Translates to: SSSLLSTPPATS*NSSHRYGPVWT
Trigger: AGTCCAGACAGGACCATACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAGAAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp AAGGAAACACAGCTGGCTCCTCTTCCTCTTCTTCATTaGTGTCCACTCCACCAGCTACTTCCTGCAACAGTT +
Preference number: 3 (lower is better)
Translates to: KETQLAPLPLLH*CPLHQLLPATV
Trigger: AACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAGAAGAGGAAGAGGAGCCAGCTGTGTTTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp CCTGTATCCTTCAGGGGCCCCTGTTCATCTGTATCTTaGAGCCAATCAAACTTGTGGTGGCTTGGAGAGTAT +
Preference number: 3 (lower is better)
Translates to: PVSFRGPCSSVS*SQSNLWWLGEY
Trigger: ATACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAGATGAACAGGGGCCCCTGAAGGATACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CCA 72 bp CAATGGGAAATTTCTCATGCCTGGCTGCTGATAGTCTaGACCAAAGGCAAGGTCAGGGTCATATCCAGAAGG +
Preference number: 3 (lower is better)
Translates to: QWEISHAWLLIV*TKGKVRVISRR
Trigger: CCTTCTGGATATGACCCTGACCTTGCCTTTGGTCCAGACTATCAGCAGCCAGGCATGAGAAATTTCCCATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGTTTTGGCTTGCTCCTTaGGAAACGGAAAAGAAAGAT +
Preference number: 3 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWFWLAP*ETEKKD
Trigger: ATCTTTCTTTTCCGTTTCCAAAGGAGCAAGCCAAAA...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000169488.10
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTCATGTGTGTGTGTGTTaGCCTGTGCGTGAAAATAGA +
Preference number: 3 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGHVCVC*PVRENR
Trigger: TCTATTTTCACGCACAGGCAAACACACACACACATG...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR-3UTR CAA 90 bp TGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGGTATGGTCCTGTCTATCTCTCCCCCAAATTaGGTGAAGGTCAACTTTGTG +
Preference number: 3 (lower is better)
Translates to: CPLHQLLPATVHTGMVLSISPPN*VKVNFV
Trigger: CACAAAGTTGACCTTCACCAAATTTGGGGGAGAGAT...AGACAGGACCATACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp AGAAGGGTTCTCTTGCCAGACAGAGGCCAAGAGAGGCTCAGATTTGCTAAAATATCCCTGAGCAGACTCTaGCTAGGTGCTGTGAAACCA +
Preference number: 3 (lower is better)
Translates to: RRVLLPDRGQERLRFAKISLSRL*LGAVKP
Trigger: TGGTTTCACAGCACCTAGCAAGAGTCTGCTCAGGGA...TATTTTAGCAAATCTGAGCCTCTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR TCA 72 bp CATCTGAGGGGCGGGCTTGTCTGCGTTCAAATTTGTTaGTATTTTGCCTTTGATGCTCCTCTGACTTCACGG +
Preference number: 3 (lower is better)
Translates to: HLRGGLVCVQIC*YFAFDAPLTSR
Trigger: CCGTGAAGTCAGAGGAGCATCAAAGGCAAAATATCAACAAATTTGAACGCAGACAAGCCCGCCCCTCAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CCA 72 bp AACTTCCATGTCCAAGGTCTTGGGAGTGTTATCCACTaGCACAATTACCCTCCTAAAGGAAGTGACAGTCGG +
Preference number: 3 (lower is better)
Translates to: NFHVQGLGSVIH*HNYPPKGSDSR
Trigger: CCGACTGTCACTTCCTTTAGGAGGGTAATTGTGCCAGTGGATAACACTCCCAAGACCTTGGACATGGAAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp TGTGGCCTGAGCTTTGCCATCAGAACGATAGGTACCATTCCTTGGAGCTGTTGCCTGTTCATCTGTATCTaGGAGCCAATCAAACTTGTG +
Preference number: 3 (lower is better)
Translates to: CGLSFAIRTIGTIPWSCCLFICI*EPIKLV
Trigger: CACAAGTTTGATTGGCTCCAAGATACAGATGAACAG...GCAACAGCTCCAAGGAATGGTACCTATCGTTCTGATGGCAAAGCTCAGGCCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp AACTGCTTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCTCTTCCTCTTCTTCATaGCTGTCCACTCCACCAGCT +
Preference number: 3 (lower is better)
Translates to: NCFSFWISSIIFSREAWCSSSSS*LSTPPA
Trigger: AGCTGGTGGAGTGGACAGCAATGAAGAAGAGGAAGA...GCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAAGCAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp ACTGCTGGCCTGAATTTAACAATGGGAAATTTCTCATaGCTGGCTGCTGATAGTCTGGACCAAAGGCAAGGT +
Preference number: 3 (lower is better)
Translates to: TAGLNLTMGNFS*LAADSLDQRQG
Trigger: ACCTTGCCTTTGGTCCAGACTATCAGCAGCCAGGCATGAGAAATTTCCCATTGTTAAATTCAGGCCAGCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR GCA 72 bp TTTGTTTCTATTGCGCTGTATAGAATAGGAAGCAGATaGCATAGGGGAAGGAAAGGCCAGCTTCCCAAGAGA +
Preference number: 3 (lower is better)
Translates to: FVSIALYRIGSR*HRGRKGQLPKR
Trigger: TCTCTTGGGAAGCTGGCCTTTCCTTCCCCTATGGCATCTGCTTCCTATTCTATACAGCGCAATAGAAACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTTTTGGCTTGCTCCTTaGGAAACGGAAAAGAAAGAT +
Preference number: 3 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIFWLAP*ETEKKD
Trigger: ATCTTTCTTTTCCGTTTCCAAAGGAGCAAGCCAAAA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CCA 72 bp TGTTCATCTGTATCTTGGAGCCAATCAAACTTGTGGTaGCTTGGAGAGTATTTCTCTAAGAACTTCACTTCA +
Preference number: 3 (lower is better)
Translates to: CSSVSWSQSNLW*LGEYFSKNFTS
Trigger: TGAAGTGAAGTTCTTAGAGAAATACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAGATGAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp CTAACATCTAAGACTGGGCTGCCACCCCTGAAAGGTTCCGTGGCCTGCCGGCTGGGGGGAGGGCTTCGCTaGGGCCAGGATGGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: LTSKTGLPPLKGSVACRLGGGLR*GQDGAA
Trigger: GGCAGCCCCATCCTGGCCTCAGCGAAGCCCTCCCCC...CAGCCGGCAGGCCACGGAACCTTTCAGGGGTGGCAGCCCAGTCTTAGATGTTAG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp TTCTTGGTCAGGCTAGGGGTCAGCCCAAGGGGAGCATCAGGCAGGCCCTTCTGCGATGGGTGGCGGAGGTaGCACGGGGGAGGGCTTCGC +
Preference number: 4 (lower is better)
Translates to: FLVRLGVSPRGASGRPFCDGWRR*HGGGLR
Trigger: GCGAAGCCCTCCCCCGTGCCACCTCCGCCACCCATC...GCAGAAGGGCCTGCCTGATGCTCCCCTTGGGCTGACCCCTAGCCTGACCAAGAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR CCA 90 bp CCCACTCGGTTCAGGTGGCCCCGGACATGGTTGGCTAGCCCGATACATTGTGGAGATGGGTGGCGGAGGTaGCACGGGGGAGGGCTTCGC +
Preference number: 4 (lower is better)
Translates to: PTRFRWPRTWLASPIHCGDGWRR*HGGGLR
Trigger: GCGAAGCCCTCCCCCGTGCCACCTCCGCCACCCATC...TCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACCGAGTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp GGTTCCGTGGCCTGCCGGCTGGGCAGTGACCCACGCACATGCAGCTTGGCATGCTCGCTGAGGCCAGGATaGGGCTGCCCATCAGAAATG +
Preference number: 4 (lower is better)
Translates to: GSVACRLGSDPRTCSLACSLRPG*GCPSEM
Trigger: CATTTCTGATGGGCAGCCCCATCCTGGCCTCAGCGA...GCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGCCACGGAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGCTCCCCGCCCGGGTaGGAGGCGGATCTGGATGCC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGSPPG*EADLDA
Trigger: GGCATCCAGATCCGCCTCCCACCCGGGCGGGGAGCC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGGTGGGCCCGGGCATaGCTGGAGAGGCCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRWARA*LERPAR
Trigger: TCGGGCTGGCCTCTCCAGTCATGCCCGGGCCCACCT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR TCA 90 bp CCAGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGGGGGAGGGCTTCGCTaGGGCCAGGATGGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: PARVSKPAPQKSHRIRLKGGGLR*GQDGAA
Trigger: GGCAGCCCCATCCTGGCCTCAGCGAAGCCCTCCCCC...CTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCTGG
62% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR CCA 90 bp TGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCAACCTCCTCCCAGCTGCTGATCCGATaGGTGGCGGAGGTGGCACGG +
Preference number: 4 (lower is better)
Translates to: WLVQGWLVRSSKASPTSSQLLIR*VAEVAR
Trigger: CCGTGCCACCTCCGCCACCCATCGGATCAGCAGCTG...GGAGGAGGTTGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCCCAGGTGGCGCAGATaGGCACGGGCGTGGCTGGAC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLPRWRR*ARAWLD
Trigger: GTCCAGCCACGCCCGTGCCCATCTGCGCCACCTGGG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
3UTR CAA 72 bp GATGCTCCTCTGACTTCACGGTCCCAGGTGGGCTGGTaGCCAGAGGCCGTTCACCACTGTCAGCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: DAPLTSRSQVGW*PEAVHHCQLPF
Trigger: GAAGGGCAGCTGACAGTGGTGAACGGCCTCTGGCAACCAGCCCACCTGGGACCGTGAAGTCAGAGGAGCATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGACCCTGTGATGGGTaGCAGGCTGAGCTCCCGGGG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGPCDG*QAELPG
Trigger: CCCCGGGAGCTCAGCCTGTCACCCATCACAGGGTCC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTGGCATCCGGGTCGCTaGCGCCCAGGTGGCGCAGAT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLWHPGR*RPGGAD
Trigger: ATCTGCGCCACCTGGGCGTCAGCGACCCGGATGCCA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCCTGGAGGGGCCGCTTaGTTGCCACTGGGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWPGGAA*LPLGPG
Trigger: ACCTGGGCCCAGTGGCAACCAAGCGGCCCCTCCAGG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
3UTR CAA 72 bp GCCTGCCGGCTGGGCAGTGACCCACGCACATGCAGCTaGGCATGCTGCATGAAGGCTCTAGAGGAATTGGTG +
Preference number: 4 (lower is better)
Translates to: ACRLGSDPRTCS*ACCMKALEELV
Trigger: CACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCATGTGCGTGGGTCACTGCCCAGCCGGCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGCGGGAAGGGCATGGTaGGAGGTAAGCGTGGCCGTC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWAGRAW*EVSVAV
Trigger: GACGGCCACGCTTACCTCTCACCATGCCCTTCCCGC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGCTGCAGAGGCATCTaGGGGGCGGGCTTGTCTGCG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWSCRGI*GAGLSA
Trigger: CGCAGACAAGCCCGCCCCTCAGATGCCTCTGCAGCT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAGCTGCAGAGGCATCTaGGGGGCGGGCTTGTCTGCG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSCRGI*GAGLSA
Trigger: CGCAGACAAGCCCGCCCCTCAGATGCCTCTGCAGCT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCTGAGCAGACTCTTGCTAGGTGCTGTGAAACCACAGTGAACACAGGTATTGAGGGGGGAGGGCTTCGCTaGGGCCAGGATGGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: PEQTLARCCETTVNTGIEGGGLR*GQDGAA
Trigger: GGCAGCCCCATCCTGGCCTCAGCGAAGCCCTCCCCC...CTCAATACCTGTGTTCACTGTGGTTTCACAGCACCTAGCAAGAGTCTGCTCAGG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR GCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGACCCGGGGCGGGGGTTaGCGCACTTCTTCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWTRGGG*RTSSSF
Trigger: GAAGCTGGAAGAAGTGCGGCAACCCCCGCCCCGGGT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGACCCGGGGCGGGGGTTaGCGCACTTCTTCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLTRGGG*RTSSSF
Trigger: GAAGCTGGAAGAAGTGCGGCAACCCCCGCCCCGGGT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCTAGGACCTGGTGGGTaGAGGTGTCCCCCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWLGPGG*RCPPGL
Trigger: CAGGCCAGGGGGACACCTCCACCCACCAGGTCCTAG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTGGGCTAGGACCTGGTaGGTGGAGGTGTCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLWARTW*VEVSPW
Trigger: CCAGGGGGACACCTCCACCCACCAGGTCCTAGCCCA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAGCTCCCGGGGAACTTaGGTCGGCCCAGCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSSRGT*VGPAPG
Trigger: ACCAGGAGCTGGGCCGACCCAAGTTCCCCGGGAGCT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGGAAGCGGTCCTCCTaGAGGGGCCGCTTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRKRSS*RGRLVA
Trigger: GGCAACCAAGCGGCCCCTCCAGGAGGACCGCTTCCT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCGGTCCCAGGTGGGCTaGTTGCCAGAGGCCGTTCAC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLRSQVG*LPEAVH
Trigger: GTGAACGGCCTCTGGCAACCAGCCCACCTGGGACCG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCGGTCCCAGGTGGGCTaGTTGCCAGAGGCCGTTCAC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRSQVG*LPEAVH
Trigger: GTGAACGGCCTCTGGCAACCAGCCCACCTGGGACCG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGCTGCTGATCCGATaGGTGGCGGAGGTGGCACGG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWQLLIR*VAEVAR
Trigger: CCGTGCCACCTCCGCCACCCATCGGATCAGCAGCTG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCTTCTTGGCCGGCGGTaGGGGAGGGAGCAAGGAGAG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWLLGRR*GREQGE
Trigger: CTCTCCTTGCTCCCTCCCCCACCGCCGGCCAAGAAG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCAGCTTGGCCTTCTTaGCCGGCGGTGGGGGAGGGA +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSAWPS*PAVGEG
Trigger: TCCCTCCCCCACCGCCGGCCAAGAAGGCCAAGCTGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCCGAGGCCTTCAGCTTaGCCTTCTTGGCCGGCGGTG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWPRPSA*PSWPAV
Trigger: CACCGCCGGCCAAGAAGGCCAAGCTGAAGGCCTCGG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCCTCTGCGGCCACTTTaGTGCTCAGCCGACTGGCCA +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLPLRPL*CSADWP
Trigger: TGGCCAGTCGGCTGAGCAGCAAAGTGGCCGCAGAGG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGTGGGTCAGGCCCTTaGCTGAGAAGCCAGGAGGTG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGGSGP*LRSQEV
Trigger: CACCTCCTGGCTTCTCAGCCAAGGGCCTGACCCACC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGAGAGCTGGATGGGTaGGTCAGGCCCTTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGELDG*VRPLAE
Trigger: CTCAGCCAAGGGCCTGACCCACCCATCCAGCTCTCC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGTGGAGAGCTGGATaGGTGGGTCAGGCCCTTGGC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLEWRAG*VGQALG
Trigger: GCCAAGGGCCTGACCCACCCATCCAGCTCTCCACTC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGGTGGTCAGGCTCTaGGCCTTGAGGTCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWQVVRL*ALRSGS
Trigger: GCTGCCAGACCTCAAGGCCCAGAGCCTGACCACCTG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGGCACCACACAGCTaGCAGTCCAGCTCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWQAPHS*QSSSLP
Trigger: GGGCAGAGAGCTGGACTGCCAGCTGTGTGGTGCCTG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGTGGGAGGCGGATCTaGATGCCGTCCCTCCTGATG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLGGRRI*MPSLLM
Trigger: CATCAGGAGGGACGGCATCCAGATCCGCCTCCCACC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCTTCCCCCAGGGACTaGCCATACCCGAGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLASPRD*PYPRPS
Trigger: TGAAGGCCTCGGGTATGGCCAGTCCCTGGGGGAAGC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTGTTGGCTCTGGGCCTaGAGTGAGATTCAGCGGCCC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLCWLWA*SEIQRP
Trigger: GGGCCGCTGAATCTCACTTCAGGCCCAGAGCCAACA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGTGTAGCAAGGCCTaGGAACATCTTCCGGGCCGT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLGCSKA*EHLPGR
Trigger: ACGGCCCGGAAGATGTTCTCAGGCCTTGCTACACCC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGAGCCATCTTCAGTaGGGGCAGGAGCCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLESHLQ*GQEPGL
Trigger: GAGACCTGGCTCCTGCCCTCACTGAAGATGGCTCTC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGAGAGCCATCTTCAGTaGGGGCAGGAGCCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWESHLQ*GQEPGL
Trigger: GAGACCTGGCTCCTGCCCTCACTGAAGATGGCTCTC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGGTAGCTGGCAGCTaGGGGCTTGGACCCTGTGAT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWQVAGS*GLGPCD
Trigger: ATCACAGGGTCCAAGCCCTCAGCTGCCAGCTACCTG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCAGGTAGCTGGCAGCTaGGGGCTTGGACCCTGTGAT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLQVAGS*GLGPCD
Trigger: ATCACAGGGTCCAAGCCCTCAGCTGCCAGCTACCTG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCAGAGCCCCAGGAGCTaGTGTGGGAGAGCCATCTTC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLQSPRS*CGRAIF
Trigger: GAAGATGGCTCTCCCACAGCAGCTCCTGGGGCTCTG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGAGGCAGTGGGGAATaGAGAGCCCCAGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRGSGE*RAPGAA
Trigger: AGCAGCTCCTGGGGCTCTGCATTCCCCACTGCCTCT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAGAGGCAGTGGGGAATaGAGAGCCCCAGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLRGSGE*RAPGAA
Trigger: AGCAGCTCCTGGGGCTCTGCATTCCCCACTGCCTCT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp TGGCTAGTACAGGGCTGGCTAGTGAGGTCCTCAAAGGCCTCTCCAACCTCCTCCAGGCCAGGATGGGGCTaGCCATCAGAAATGCCACTT +
Preference number: 4 (lower is better)
Translates to: WLVQGWLVRSSKASPTSSRPGWG*PSEMPL
Trigger: AAGTGGCATTTCTGATGGGCAGCCCCATCCTGGCCT...GGAGGAGGTTGGAGAGGCCTTTGAGGACCTCACTAGCCAGCCCTGTACTAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR GCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGAGGCCCAGAAAATaGCGGCGGCCGAGAGATCCT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWQRPRK*RRPRDP
Trigger: AGGATCTCTCGGCCGCCGGCATTTTCTGGGCCTCTG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGCATCTCCGTAGATTaGCCCAGGGTCCTCAGCCCA +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGISVD*PRVLSP
Trigger: TGGGCTGAGGACCCTGGGCCAATCTACGGAGATGCC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCCCCCTGGCCTGGATTaGGTCCGTCTCTTCAGGATC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLPPGLD*VRLFRI
Trigger: GATCCTGAAGAGACGGACCCAATCCAGGCCAGGGGG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCCCCCTGGCCTGGATTaGGTCCGTCTCTTCAGGATC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWPPGLD*VRLFRI
Trigger: GATCCTGAAGAGACGGACCCAATCCAGGCCAGGGGG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGTGTCCCCCTGGCCTaGATTGGGTCCGTCTCTTCA +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLGVPLA*IGSVSS
Trigger: TGAAGAGACGGACCCAATCCAGGCCAGGGGGACACC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTTTTGGGCTAGGACCTaGTGGGTGGAGGTGTCCCCC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLFWART*WVEVSP
Trigger: GGGGGACACCTCCACCCACCAGGTCCTAGCCCAAAA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCCAGGGACCCTCAGATaGGTGTGGCTCCCCATGAAG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLPGTLR*VWLPMK
Trigger: CTTCATGGGGAGCCACACCCATCTGAGGGTCCCTGG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCACAGCAGGCCTCGGTaGAGGAGTGGGAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLHSRPR*RSGRSS
Trigger: AGAAGACCTCCCACTCCTCCACCGAGGCCTGCTGTG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGATCGCTGAGGCCAGGATaGGGCTGCCCATCAGAAATG +
Preference number: 4 (lower is better)
Translates to: SRTGSARADRFKGAISSRSLRPG*GCPSEM
Trigger: CATTTCTGATGGGCAGCCCCATCCTGGCCTCAGCGA...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCGTGGAGCACGTCTATaGGGGATCCCTTGGCATCCG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRGARL*GIPWHP
Trigger: CGGATGCCAAGGGATCCCCCATAGACGTGCTCCACG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
3UTR CAA 72 bp CTGACACCCACTCGGTTCAGGTGGCCCCGGACATGGTaGGCTAGCCCGATACATTGTGGAAACGATCAGGAC +
Preference number: 4 (lower is better)
Translates to: LTPTRFRWPRTW*ASPIHCGNDQD
Trigger: GTCCTGATCGTTTCCACAATGTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACCGAGTGGGTGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGCACCACTGCTTTCTaGCTCTGCGACCCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWSTTAF*LCDPKL
Trigger: CAGCTTGGGGTCGCAGAGTCAGAAAGCAGTGGTGCT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAGCACCACTGCTTTCTaGCTCTGCGACCCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSTTAF*LCDPKL
Trigger: CAGCTTGGGGTCGCAGAGTCAGAAAGCAGTGGTGCT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGCCTGAAGAGAGGTTaGGAGGAGACGGCTCCACAT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGLKRG*EETAPH
Trigger: ATGTGGAGCCGTCTCCTCTCAACCTCTCTTCAGGCC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTATCTTCTCGAGGCGTaGCCCAGGGACCCTCAGATG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLYLLEA*PRDPQM
Trigger: CATCTGAGGGTCCCTGGGGCACGCCTCGAGAAGATA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAAGCTGCCCATCAGAAATaGCACTTCTGCCATCCAGAA +
Preference number: 4 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQAAHQK*HFCHPE
Trigger: TTCTGGATGGCAGAAGTGGCATTTCTGATGGGCAGC...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR GCA 90 bp GGCCTGGTGCTCGGCGGTGCTGGCTCATGTGTTCTAGGAGGTGTTCCTTGTGCTGCTGCCCATCAGAAATaGCACTTCTGCCATCCAGAA +
Preference number: 4 (lower is better)
Translates to: GLVLGGAGSCVLGGVPCAAAHQK*HFCHPE
Trigger: TTCTGGATGGCAGAAGTGGCATTTCTGATGGGCAGC...AGCACAAGGAACACCTCCTAGAACACATGAGCCAGCACCGCCGAGCACCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGTGCCTTTGGGGAAGTTaGTCGGGGACTCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWCLWGS*SGTQGQ
Trigger: CTGTCCCTGAGTCCCCGACCAACTTCCCCAAAGGCA...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGGCCATTGTGCCTTTaGGGAAGTTGGTCGGGGACT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGPLCL*GSWSGT
Trigger: AGTCCCCGACCAACTTCCCCAAAGGCACAATGGCCC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGCCATTGTGCCTTTaGGGAAGTTGGTCGGGGACT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLGPLCL*GSWSGT
Trigger: AGTCCCCGACCAACTTCCCCAAAGGCACAATGGCCC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCCCTCATCCTCAGACTaGGGCCATTGTGCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLPSSSD*GHCAFG
Trigger: CCCAAAGGCACAATGGCCCCAGTCTGAGGATGAGGG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCAGTTACACCCATCTaGCGCAGGTGGGAGCGTGCA +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSVTPI*RRWERA
Trigger: TGCACGCTCCCACCTGCGCCAGATGGGTGTAACTGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGACATCTTCCGGGCCGTaGGAGGAGGAGAAGCAGTTG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWTSSGP*EEEKQL
Trigger: CAACTGCTTCTCCTCCTCCCACGGCCCGGAAGATGT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGCCTCGGTGGAGGAGTaGGAGGTCTTCTCATGGAGA +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWASVEE*EVFSWR
Trigger: TCTCCATGAGAAGACCTCCCACTCCTCCACCGAGGC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCACTGTCACGGCCATaGCCAGCGCTGCGAAACTTC +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSLSRP*PALRNF
Trigger: GAAGTTTCGCAGCGCTGGCCATGGCCGTGACAGTGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCCAGCTTCAAGCCCTaGTTCTCCCCCAGCACTTCG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSSFKP*FSPSTS
Trigger: CGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCGTACCCACTCTTCCTaGATAGAGAGTGGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLRTHSS*IESGPW
Trigger: CCAGGGCCCACTCTCTATCCAGGAAGAGTGGGTACG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CTTCATTGCTGTCCACTCCACCAGCTACTTCCTGCAACAGTTCACACAGGTATGCAGCTGCTGATCCGATaGGTGGCGGAGGTGGCACGG +
Preference number: 4 (lower is better)
Translates to: LHCCPLHQLLPATVHTGMQLLIR*VAEVAR
Trigger: CCGTGCCACCTCCGCCACCCATCGGATCAGCAGCTG...CATACCTGTGTGAACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCTCCTGATGAGCCCGTaGAGCACGTCTATGGGGGAT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLLLMSP*STSMGD
Trigger: ATCCCCCATAGACGTGCTCCACGGGCTCATCAGGAG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
3UTR CAA 72 bp TGCAGGATGTTGATGGGTGAGATGGTGAGTTCCCAGTaGGTGATGCCAAAGTCACGAAGGTGGGCCCGGGCA +
Preference number: 4 (lower is better)
Translates to: CRMLMGEMVSSQ*VMPKSRRWARA
Trigger: TGCCCGGGCCCACCTTCGTGACTTTGGCATCACCAACTGGGAACTCACCATCTCACCCATCAACATCCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CAA 72 bp CAGCTGTGGGGATGCTCGGGTGGTGGCAGCTATGACTaGTGGCCTGAGCTTTGCCATCAGAACGATAGGTAC +
Preference number: 4 (lower is better)
Translates to: QLWGCSGGGSYD*WPELCHQNDRY
Trigger: GTACCTATCGTTCTGATGGCAAAGCTCAGGCCACAAGTCATAGCTGCCACCACCCGAGCATCCCCACAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTGGACCCTGTGATGGGTaGCAGGCTGAGCTCCCGGGG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIGPCDG*QAELPG
Trigger: CCCCGGGAGCTCAGCCTGTCACCCATCACAGGGTCC...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCTGAGGCCGGTGTTTaGTCCACTCACTCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSEAGV*STHSGS
Trigger: AGACCCTGAGTGAGTGGATCAAACACCGGCCTCAGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp AGTCTGGACCAAAGGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTTGCCAGATTCCAATCCAGCTGCTaGTCCGATGGGTGGCGGAGG +
Preference number: 4 (lower is better)
Translates to: SLDQRQGQGHIQKGSLARFQSSC*SDGWRR
Trigger: CCTCCGCCACCCATCGGATCAGCAGCTGGATTGGAA...TCTGGCAAGAGAACCCTTCTGGATATGACCCTGACCTTGCCTTTGGTCCAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171728.3
CDS-3UTR GCA 90 bp TGTCAGCTGCCCTTCCAGCTTCAAGCCCTGGTTCTCCCCCAGCACTTCGGCCAACAGAAATGCCACTTCTaGCATCCAGAATGTCTCGAG +
Preference number: 4 (lower is better)
Translates to: CQLPFQLQALVLPQHFGQQKCHF*HPECLE
Trigger: CTCGAGACATTCTGGATGGCAGAAGTGGCATTTCTG...TTGGCCGAAGTGCTGGGGGAGAACCAGGGCTTGAAGCTGGAAGGGCAGCTGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR GCA 90 bp CTAACATCTAAGACTGGGCTGCCACCCCTGAAAGGTTCCGTGGCCTGCCGGCTGCAGAAATGCCACTTCTaGCATCCAGAATGTCTCGAG +
Preference number: 4 (lower is better)
Translates to: LTSKTGLPPLKGSVACRLQKCHF*HPECLE
Trigger: CTCGAGACATTCTGGATGGCAGAAGTGGCATTTCTG...CAGCCGGCAGGCCACGGAACCTTTCAGGGGTGGCAGCCCAGTCTTAGATGTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR GCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGACTGGGGCCATTGTaGCTTTGGGGAAGTTGGTCG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRLGPL*LWGSWS
Trigger: CGACCAACTTCCCCAAAGGCACAATGGCCCCAGTCT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAGACTGGGGCCATTGTaGCTTTGGGGAAGTTGGTCG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLRLGPL*LWGSWS
Trigger: CGACCAACTTCCCCAAAGGCACAATGGCCCCAGTCT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAGGCCAGGATGGGGCTaGCCATCAGAAATGCCACTT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRPGWG*PSEMPL
Trigger: AAGTGGCATTTCTGATGGGCAGCCCCATCCTGGCCT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGCAGTCCAGCTCTCTaGCCCCGTCACTATCTAAAG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLGSPAL*PRHYLK
Trigger: CTTTAGATAGTGACGGGGGCAGAGAGCTGGACTGCC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCGTAGAGGAGGTCGATaGGAGCACCACTGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRRGGR*EHHCFL
Trigger: CAGAAAGCAGTGGTGCTCCCATCGACCTCCTCTACG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCGTAGAGGAGGTCGATaGGAGCACCACTGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLRRGGR*EHHCFL
Trigger: CAGAAAGCAGTGGTGCTCCCATCGACCTCCTCTACG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCTGTTGCAGGTCATTaGCTTCCTCACCACCACGAG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSVAGH*LPHHHE
Trigger: CTCGTGGTGGTGAGGAAGTCAATGACCTGCAACAGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGCAGAAATGCCACTTCTaGCATCCAGAATGTCTCGAG +
Preference number: 4 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKQKCHF*HPECLE
Trigger: CTCGAGACATTCTGGATGGCAGAAGTGGCATTTCTG...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR GCA 90 bp TCTCATGCCTGGCTGCTGATAGTCTGGACCAAAGGCAAGGTCAGGGTCATATCCAGGCCAGGATGGGGCTaGCCATCAGAAATGCCACTT +
Preference number: 4 (lower is better)
Translates to: SHAWLLIVWTKGKVRVISRPGWG*PSEMPL
Trigger: AAGTGGCATTTCTGATGGGCAGCCCCATCCTGGCCT...GGATATGACCCTGACCTTGCCTTTGGTCCAGACTATCAGCAGCCAGGCATGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTGGGCCCGGGCATGACTaGAGAGGCCAGCCCGAGTAT +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIGPGHD*RGQPEY
Trigger: ATACTCGGGCTGGCCTCTCCAGTCATGCCCGGGCCC...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTAGGAAGCGGTCCTCCTaGAGGGGCCGCTTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIRKRSS*RGRLVA
Trigger: GGCAACCAAGCGGCCCCTCCAGGAGGACCGCTTCCT...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp AAAGGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTTGCCAGACAGAGGCCAATCGCTGAGGCCAGGATaGGGCTGCCCATCAGAAATG +
Preference number: 4 (lower is better)
Translates to: KGKVRVISRRVLLPDRGQSLRPG*GCPSEM
Trigger: CATTTCTGATGGGCAGCCCCATCCTGGCCTCAGCGA...TTGGCCTCTGTCTGGCAAGAGAACCCTTCTGGATATGACCCTGACCTTGCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp CTGTATCTTGGAGCCAATCAAACTTGTGGTGGCTTGGAGAGTATTTCTCTAAGAGATGGGTGGCGGAGGTaGCACGGGGGAGGGCTTCGC +
Preference number: 4 (lower is better)
Translates to: LYLGANQTCGGLESISLRDGWRR*HGGGLR
Trigger: GCGAAGCCCTCCCCCGTGCCACCTCCGCCACCCATC...TCTTAGAGAAATACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 72 bp CTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCAGTaGCCAGTGCTGTTCCAGGGCAGTGGGTTCTGTGAA +
Preference number: 4 (lower is better)
Translates to: LFNNLLPGSLVQ*PVLFQGSGFCE
Trigger: TTCACAGAACCCACTGCCCTGGAACAGCACTGGCAACTGCACCAGGCTTCCCGGGAGAAGATTATTGAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 72 bp ATGAAGGCTCTAGAGGAATTGGTGCCAAAGACGCACTaGGAGCATTGCAGTCGTGCCTCACGGCCCTCATCA +
Preference number: 4 (lower is better)
Translates to: MKALEELVPKTH*EHCSRASRPSS
Trigger: TGATGAGGGCCGTGAGGCACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGCAGCATCTCCCTCTTaGTCTCCACTCTCATGTGTT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWAASPS*SPLSCV
Trigger: AACACATGAGAGTGGAGATCAAGAGGGAGATGCTGC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGCATCTCCCTCTTaGTCTCCACTCTCATGTGTT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLAASPS*SPLSCV
Trigger: AACACATGAGAGTGGAGATCAAGAGGGAGATGCTGC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCACAGAACCTGCACTTaGGGGTATAGATGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLHRTCT*GYRCCP
Trigger: TGGGCAACATCTATACCCTCAAGTGCAGGTTCTGTG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR TCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCGTCACTATCTAAAGTaGGATTCAGCGGCCCCTCAT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWRHYLK*DSAAPH
Trigger: ATGAGGGGCCGCTGAATCTCACTTTAGATAGTGACG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAGACAGGTTCAAGGGTaGCATATCTTCTCGAGGCGT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLRQVQG*HIFSRR
Trigger: ACGCCTCGAGAAGATATGGCACCCTTGAACCTGTCT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTGGAGAGCTGGATGGGTaGGTCAGGCCCTTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIGELDG*VRPLAE
Trigger: CTCAGCCAAGGGCCTGACCCACCCATCCAGCTCTCC...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGAGACCCCAAGTCCATaGCCACCATTGTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWETPSP*PPLCFP
Trigger: AGGAAAACACAATGGTGGCCATGGACTTGGGGTCTC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
3UTR CAA 72 bp TGCAGCTTGGCATGCTGCATGAAGGCTCTAGAGGAATaGGTGCCAAAGACGCACTTGGAGCATTGCAGTCGT +
Preference number: 4 (lower is better)
Translates to: CSLACCMKALEE*VPKTHLEHCSR
Trigger: ACGACTGCAATGCTCCAAGTGCGTCTTTGGCACCAATTCCTCTAGAGCCTTCATGCAGCATGCCAAGCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTGGGTGTAGCAAGGCCTaGGAACATCTTCCGGGCCGT +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIGCSKA*EHLPGR
Trigger: ACGGCCCGGAAGATGTTCTCAGGCCTTGCTACACCC...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR GCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCAGAGCCCCAGGAGCTaGTGTGGGAGAGCCATCTTC +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIQSPRS*CGRAIF
Trigger: GAAGATGGCTCTCCCACAGCAGCTCCTGGGGCTCTG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR GCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCTCATGGAGAGTCTTTaGCTTGAAGGGCAGTTCAGT +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWLMESL*LEGQFS
Trigger: ACTGAACTGCCCTTCAAGGCAAAGACTCTCCATGAG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCTCATGGAGAGTCTTTaGCTTGAAGGGCAGTTCAGT +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLLMESL*LEGQFS
Trigger: ACTGAACTGCCCTTCAAGGCAAAGACTCTCCATGAG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CCA 90 bp CCATGGCTGGGTCCCCTTCTAGGAGTGTGTTCAGACCCAGTGAGCCACCCAAAGCAGGTAATGAGAAGATaGAAAGATATCACCTTCCCC +
Preference number: 4 (lower is better)
Translates to: PWLGPLLGVCSDPVSHPKQVMRR*KDITFP
Trigger: GGGGAAGGTGATATCTTTCCATCTTCTCATTACCTG...CTTTGGGTGGCTCACTGGGTCTGAACACACTCCTAGAAGGGGACCCAGCCATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTACTCCGCTGCTGAGGTaGCCAGCAGCTCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDITPLLR*PAALAG
Trigger: TCCTGCAAGAGCTGCTGGCCACCTCAGCAGCGGAGT...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTTTTGGGCTAGGACCTaGTGGGTGGAGGTGTCCCCC +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIFWART*WVEVSP
Trigger: GGGGGACACCTCCACCCACCAGGTCCTAGCCCAAAA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCCAGGGACCCTCAGATaGGTGTGGCTCCCCATGAAG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIPGTLR*VWLPMK
Trigger: CTTCATGGGGAGCCACACCCATCTGAGGGTCCCTGG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR GCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCTTCCAGCTTCTGTTaGAGGTCATTGACTTCCTCA +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSSSFC*RSLTSS
Trigger: TGAGGAAGTCAATGACCTGCAACAGAAGCTGGAAGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp AGCCCGAGTATCAAAACCAGCCCCACAGAAGTCACATCGCATCAGGCTAAAGGTGCTGCCCATCAGAAATaGCACTTCTGCCATCCAGAA +
Preference number: 4 (lower is better)
Translates to: SPSIKTSPTEVTSHQAKGAAHQK*HFCHPE
Trigger: TTCTGGATGGCAGAAGTGGCATTTCTGATGGGCAGC...ACCTTTAGCCTGATGCGATGTGACTTCTGTGGGGCTGGTTTTGATACTCGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR CCA 90 bp TCACGCACTGGCTCTGCCCGAGCTGACAGGTTCAAGGGTGCCATATCTTCTCGACAGGTAATGAGAAGATaGAAAGATATCACCTTCCCC +
Preference number: 4 (lower is better)
Translates to: SRTGSARADRFKGAISSRQVMRR*KDITFP
Trigger: GGGGAAGGTGATATCTTTCCATCTTCTCATTACCTG...TCGAGAAGATATGGCACCCTTGAACCTGTCAGCTCGGGCAGAGCCAGTGCGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163107.9
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGCCTTCTTTGGTGATTaGCAGGTAATGAGAAGATGG +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWAFFGD*QVMRRW
Trigger: CCATCTTCTCATTACCTGCCAATCACCAAAGAAGGC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTGCCTTTGGGGAAGTTaGTCGGGGACTCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDICLWGS*SGTQGQ
Trigger: CTGTCCCTGAGTCCCCGACCAACTTCCCCAAAGGCA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCCCTCATCCTCAGACTaGGGCCATTGTGCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIPSSSD*GHCAFG
Trigger: CCCAAAGGCACAATGGCCCCAGTCTGAGGATGAGGG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTCAGTTACACCCATCTaGCGCAGGTGGGAGCGTGCA +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDISVTPI*RRWERA
Trigger: TGCACGCTCCCACCTGCGCCAGATGGGTGTAACTGA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCGTACCCACTCTTCCTaGATAGAGAGTGGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIRTHSS*IESGPW
Trigger: CCAGGGCCCACTCTCTATCCAGGAAGAGTGGGTACG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
3UTR CAA 72 bp CCCTGTATCCTTCAGGGGCCCCTGTTCATCTGTATCTaGGAGCCAATCAAACTTGTGGTGGCTTGGAGAGTA +
Preference number: 4 (lower is better)
Translates to: PCILQGPLFICI*EPIKLVVAWRV
Trigger: TACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAGATGAACAGGGGCCCCTGAAGGATACAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 72 bp CAAGGAAACACAGCTGGCTCCTCTTCCTCTTCTTCATaGCTGTCCACTCCACCAGCTACTTCCTGCAACAGT +
Preference number: 4 (lower is better)
Translates to: QGNTAGSSSSSS*LSTPPATSCNS
Trigger: ACTGTTGCAGGAAGTAGCTGGTGGAGTGGACAGCAATGAAGAAGAGGAAGAGGAGCCAGCTGTGTTTCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 72 bp AAAGGCAAGGTCAGGGTCATATCCAGAAGGGTTCTCTaGCCAGACAGAGGCCAAGAGAGGCTCAGATTTGCT +
Preference number: 4 (lower is better)
Translates to: KGKVRVISRRVL*PDRGQERLRFA
Trigger: AGCAAATCTGAGCCTCTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCTGGATATGACCCTGACCTTGCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTTGATATTTTGCCTTTaGTGCTCCTCTGACTTCACG +
Preference number: 4 (lower is better)
Translates to: PCLVARHREVLFSPAIRLLIFCL*CSSDFT
Trigger: CGTGAAGTCAGAGGAGCATCAAAGGCAAAATATCAA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR GCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTGTGGCCAGCAGCTCTTaGAGGATGTTGATGGGTGAG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIVASSS*RMLMGE
Trigger: CTCACCCATCAACATCCTGCAAGAGCTGCTGGCCAC...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGGTAATGAGAAGATaGAAAGATATCACCTTCCCC +
Preference number: 4 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWQVMRR*KDITFP
Trigger: GGGGAAGGTGATATCTTTCCATCTTCTCATTACCTG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000170617.8
CDS-3UTR TCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTCTGTTGCAGGTCATTaGCTTCCTCACCACCACGAG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDISVAGH*LPHHHE
Trigger: CTCGTGGTGGTGAGGAAGTCAATGACCTGCAACAGA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
3UTR CAA 72 bp TCCTCTCTGGTACCCATAACTTCCATGTCCAAGGTCTaGGGAGTGTTATCCACTGGCACAATTACCCTCCTA +
Preference number: 4 (lower is better)
Translates to: SSLVPITSMSKV*GVLSTGTITLL
Trigger: TAGGAGGGTAATTGTGCCAGTGGATAACACTCCCAAGACCTTGGACATGGAAGTTATGGGTACCAGAGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCACAGAACCTGCACTTaGGGGTATAGATGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIHRTCT*GYRCCP
Trigger: TGGGCAACATCTATACCCTCAAGTGCAGGTTCTGTG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR TCA 90 bp AGAAGGGTTCTCTTGCCAGACAGAGGCCAAGAGAGGCTCAGATTTGCTAAAATAGGAGATCAGAGTAGATaGGGAAAGTTCTCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: RRVLLPDRGQERLRFAKIGDQSR*GKFSGP
Trigger: AGGCCCAGAGAACTTTCCTCATCTACTCTGATCTCC...TATTTTAGCAAATCTGAGCCTCTCTTGGCCTCTGTCTGGCAAGAGAACCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTAAGGAACTCCTTTGGTaGGTTGGACTTCTTGGTCAG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIKELLW*VGLLGQ
Trigger: CTGACCAAGAAGTCCAACTCACCAAAGGAGTTCCTT...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR GCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCAGAAATGCCACTTCTaGCATCCAGAATGTCTCGAG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIQKCHF*HPECLE
Trigger: CTCGAGACATTCTGGATGGCAGAAGTGGCATTTCTG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000170617.8
3UTR CAA 72 bp AAACTGTGGCGACTTAGTCACATCTCTCCCCCAAATTaGGTGAAGGTCAACTTTGTGGCAGGACAGCTCAAA +
Preference number: 4 (lower is better)
Translates to: KLWRLSHISPPN*VKVNFVAGQLK
Trigger: TTTGAGCTGTCCTGCCACAAAGTTGACCTTCACCAAATTTGGGGGAGAGATGTGACTAAGTCGCCACAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 72 bp GGCCCCTGTTCATCTGTATCTTGGAGCCAATCAAACTaGTGGTGGCTTGGAGAGTATTTCTCTAAGAACTTC +
Preference number: 4 (lower is better)
Translates to: GPCSSVSWSQSN*WWLGEYFSKNF
Trigger: GAAGTTCTTAGAGAAATACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAGATGAACAGGGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS-3UTR TCA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTTGATATTTTGCCTTTaGTGCTCCTCTGACTTCACG +
Preference number: 4 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDILIFCL*CSSDFT
Trigger: CGTGAAGTCAGAGGAGCATCAAAGGCAAAATATCAA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CCA 90 bp AACTGCTTTAGCTTTTGGATCTCTTCAATAATCTTCTCCCGGGAAGCCTGGTGCCAGGTAATGAGAAGATaGAAAGATATCACCTTCCCC +
Preference number: 4 (lower is better)
Translates to: NCFSFWISSIIFSREAWCQVMRR*KDITFP
Trigger: GGGGAAGGTGATATCTTTCCATCTTCTCATTACCTG...GCACCAGGCTTCCCGGGAGAAGATTATTGAAGAGATCCAAAAGCTAAAGCAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
3UTR CAA 72 bp CATCTGTATCTTGGAGCCAATCAAACTTGTGGTGGCTaGGAGAGTATTTCTCTAAGAACTTCACTTCACCCT +
Preference number: 4 (lower is better)
Translates to: HLYLGANQTCGG*ESISLRTSLHP
Trigger: AGGGTGAAGTGAAGTTCTTAGAGAAATACTCTCCAAGCCACCACAAGTTTGATTGGCTCCAAGATACAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170617.8
ENSMUST00000171728.3
CDS CCA 90 bp CCGGGTGGGAGGCGGATCTGGATGCCGTCCCTCCTGATGAGCCCGTaGAGCACGTCTATGGGGGATCCCTTGGCATCCGGGTCGCTGACG +
Preference number: 5 (lower is better)
Translates to: PGGRRIWMPSLLMSP*STSMGDPLASGSLT
Trigger: CGTCAGCGACCCGGATGCCAAGGGATCCCCCATAGACGTGCTCCACGGGCTCATCAGGAGGGACGGCATCCAGATCCGCCTCCCACCCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS CCA 90 bp CCCAGAAAATGCCGGCGGCCGAGAGATCCTGCTTCCCCCAGGGACTaGCCATACCCGAGGCCTTCAGCTTGGCCTTCTTGGCCGGCGGTG +
Preference number: 5 (lower is better)
Translates to: PRKCRRPRDPASPRD*PYPRPSAWPSWPAV
Trigger: CACCGCCGGCCAAGAAGGCCAAGCTGAAGGCCTCGGGTATGGCCAGTCCCTGGGGGAAGCAGGATCTCTCGGCCGCCGGCATTTTCTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS GCA 90 bp GGCTCCACATCAGAGGCCCAGAAAATGCCGGCGGCCGAGAGATCCTaGTTCCCCCAGGGACTGGCCATACCCGAGGCCTTCAGCTTGGCC +
Preference number: 5 (lower is better)
Translates to: GSTSEAQKMPAAERS*FPQGLAIPEAFSLA
Trigger: GGCCAAGCTGAAGGCCTCGGGTATGGCCAGTCCCTGGGGGAAGCAGGATCTCTCGGCCGCCGGCATTTTCTGGGCCTCTGATGTGGAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCCCGGCCCAGGGGACTaGGGGGCAACTCCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLPGPGD*GATPLL
Trigger: CAGCAGCGGAGTTGCCCCCAAGTCCCCTGGGCCGGG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS CCA 90 bp GAAAGTTCTCTGGGCCTCAGTTTTCCAATCCAGCTGCTGATCCGATaGGTGGCGGAGGTGGCACGGGGGAGGGCTTCGCTGAGGCCAGGA +
Preference number: 5 (lower is better)
Translates to: ESSLGLSFPIQLLIR*VAEVARGRASLRPG
Trigger: TCCTGGCCTCAGCGAAGCCCTCCCCCGTGCCACCTCCGCCACCCATCGGATCAGCAGCTGGATTGGAAAACTGAGGCCCAGAGAACTTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171728.3
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGTTCAGCTTGGCCTTCTaGGCCGGCGGTGGGGGAGGG +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWFSLAF*AGGGGG
Trigger: CCCTCCCCCACCGCCGGCCAAGAAGGCCAAGCTGAA...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCCCGAGGCCTTCAGCTaGGCCTTCTTGGCCGGCGGT +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLPEAFS*AFLAGG
Trigger: ACCGCCGGCCAAGAAGGCCAAGCTGAAGGCCTCGGG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS CCA 90 bp CTGAACATCAAGGGATGCAGGGAAGGGACCCAGAAGATGGGGTGGTaGGGAGCCCGGCTGAAAGTCCAGGCTGTCTCCATCCCAGTAGCA +
Preference number: 5 (lower is better)
Translates to: LNIKGCREGTQKMGW*GARLKVQAVSIPVA
Trigger: TGCTACTGGGATGGAGACAGCCTGGACTTTCAGCCGGGCTCCCCACCACCCCATCTTCTGGGTCCCTTCCCTGCATCCCTTGATGTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236409.2
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGTGGGTCAGGCCCTaGGCTGAGAAGCCAGGAGGT +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLGWVRP*AEKPGG
Trigger: ACCTCCTGGCTTCTCAGCCAAGGGCCTGACCCACCC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGGTGGGTCAGGCCCTaGGCTGAGAAGCCAGGAGGT +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWGWVRP*AEKPGG
Trigger: ACCTCCTGGCTTCTCAGCCAAGGGCCTGACCCACCC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGTCCCAGGTGGGCTGGTaGCCAGAGGCCGTTCACCAC +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWSQVGW*PEAVHH
Trigger: GTGGTGAACGGCCTCTGGCAACCAGCCCACCTGGGA...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCTGGCAGCTGAGGGCTaGGACCCTGTGATGGGTGAC +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWLAAEG*DPVMGD
Trigger: GTCACCCATCACAGGGTCCAAGCCCTCAGCTGCCAG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTCTATGGGGGATCCCTaGGCATCCGGGTCGCTGACG +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLSMGDP*ASGSLT
Trigger: CGTCAGCGACCCGGATGCCAAGGGATCCCCCATAGA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGTCCCCCTGGCCTGGATaGGGTCCGTCTCTTCAGGAT +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWSPWPG*GPSLQD
Trigger: ATCCTGAAGAGACGGACCCAATCCAGGCCAGGGGGA...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCCAGTGCTCAGCACCTaGGCCAGGGCTTTTGGGCTA +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWPVLST*ARAFGL
Trigger: TAGCCCAAAAGCCCTGGCCAAGGTGCTGAGCACTGG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGGCCTGAAGAGAGGTaGAGAGGAGACGGCTCCACA +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLGPEER*RGDGST
Trigger: TGTGGAGCCGTCTCCTCTCAACCTCTCTTCAGGCCC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGGTCAGTGGGGCCTTCTaGAGGAGTGGAGAGCTGGAT +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWVSGAF*RSGELD
Trigger: ATCCAGCTCTCCACTCCTCAAGAAGGCCCCACTGAC...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCTCAGACTGGGGCCATaGTGCCTTTGGGGAAGTTGG +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWLRLGP*CLWGSW
Trigger: CCAACTTCCCCAAAGGCACAATGGCCCCAGTCTGAG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCACAGCGGATATCTCTaGTTGGCTCTGGGCCTGAAG +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWHSGYL*LALGLK
Trigger: CTTCAGGCCCAGAGCCAACAAGAGATATCCGCTGTG...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGCACAGCGGATATCTCTaGTTGGCTCTGGGCCTGAAG +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLHSGYL*LALGLK
Trigger: CTTCAGGCCCAGAGCCAACAAGAGATATCCGCTGTG...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTGGGCATCTCCGTAGATaGGCCCAGGGTCCTCAGCCC +
Preference number: 5 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIGHLRR*AQGPQP
Trigger: GGGCTGAGGACCCTGGGCCAATCTACGGAGATGCCC...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGCAGGAGGCTCTTTTTaGATGAGGCACAGCTTGGAC +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLAGGSF*MRHSLD
Trigger: GTCCAAGCTGTGCCTCATCAAAAAAGAGCCTCCTGC...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCTGGCAGCTGAGGGCTaGGACCCTGTGATGGGTGAC +
Preference number: 5 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDILAAEG*DPVMGD
Trigger: GTCACCCATCACAGGGTCCAAGCCCTCAGCTGCCAG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGTTCTGTTGCAGGTCATaGACTTCCTCACCACCACGA +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLFCCRS*TSSPPR
Trigger: TCGTGGTGGTGAGGAAGTCAATGACCTGCAACAGAA...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS CCA 90 bp AATGTCTCGAGGGCCTTCTTTGGTGATTGGCAGGTAATGAGAAGATaGAAAGATATCACCTTCCCCCTCAGCAGCCTCAGCCCCACTCTC +
Preference number: 5 (lower is better)
Translates to: NVSRAFFGDWQVMRR*KDITFPLSSLSPTL
Trigger: GAGAGTGGGGCTGAGGCTGCTGAGGGGGAAGGTGATATCTTTCCATCTTCTCATTACCTGCCAATCACCAAAGAAGGCCCTCGAGACATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000064694.14
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000165912.8
ENSMUST00000170603.3
ENSMUST00000170617.8
ENSMUST00000171728.3
ENSMUST00000236409.2
CDS-3UTR CAA 90 bp CCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGGAAGCCAGGAGGTGATTaGATGGCTTTGTTGACAGCA +
Preference number: 5 (lower is better)
Translates to: PAWLLDTGKCCSPLQSDWKPGGD*MALLTA
Trigger: TGCTGTCAACAAAGCCATCAAATCACCTCCTGGCTT...CCAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp CCCTGCCTGGTTGCTAGACACAGGGAAGTGCTGTTCTCCCCTGCAATCAGATTGAAGCCAGGAGGTGATTaGATGGCTTTGTTGACAGCA +
Preference number: 5 (lower is better)
Translates to: PCLVARHREVLFSPAIRLKPGGD*MALLTA
Trigger: TGCTGTCAACAAAGCCATCAAATCACCTCCTGGCTT...CAATCTGATTGCAGGGGAGAACAGCACTTCCCTGTGTCTAGCAACCAGGCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087703.12
ENSMUST00000169488.10
CDS-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTCCCCCTGGCCTGGATaGGGTCCGTCTCTTCAGGAT +
Preference number: 5 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDISPWPG*GPSLQD
Trigger: ATCCTGAAGAGACGGACCCAATCCAGGCCAGGGGGA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTCTCAGACTGGGGCCATaGTGCCTTTGGGGAAGTTGG +
Preference number: 5 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDILRLGP*CLWGSW
Trigger: CCAACTTCCCCAAAGGCACAATGGCCCCAGTCTGAG...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTAGCTCTTGCAGGATGTaGATGGGTGAGATGGTGAGT +
Preference number: 5 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDISSCRM*MGEMVS
Trigger: ACTCACCATCTCACCCATCAACATCCTGCAAGAGCT...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS-3UTR CAA 90 bp GGTCTCACGAGGTGCATGTGTGTGTGTGTTTGCCTGTGCGTGAAAATAGATATTTTCTGTTGCAGGTCATaGACTTCCTCACCACCACGA +
Preference number: 5 (lower is better)
Translates to: GLTRCMCVCVCLCVKIDIFCCRS*TSSPPR
Trigger: TCGTGGTGGTGAGGAAGTCAATGACCTGCAACAGAA...AATATCTATTTTCACGCACAGGCAAACACACACACACATGCACCTCGTGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087703.12
CDS CCA 72 bp TGGGCCAGGGCTCCCCGCCCGGGTGGGAGGCGGATCTaGATGCCGTCCCTCCTGATGAGCCCGTGGAGCACG +
Preference number: 6 (lower is better)
Translates to: WARAPRPGGRRI*MPSLLMSPWST
Trigger: CGTGCTCCACGGGCTCATCAGGAGGGACGGCATCCAGATCCGCCTCCCACCCGGGCGGGGAGCCCTGGCCCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS TCA 72 bp GCACGTCTATGGGGGATCCCTTGGCATCCGGGTCGCTaGCGCCCAGGTGGCGCAGATGGGCACGGGCGTGGC +
Preference number: 6 (lower is better)
Translates to: ARLWGIPWHPGR*RPGGADGHGRG
Trigger: GCCACGCCCGTGCCCATCTGCGCCACCTGGGCGTCAGCGACCCGGATGCCAAGGGATCCCCCATAGACGTGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS CAA 90 bp CCGTCCCTCCTGATGAGCCCGTGGAGCACGTCTATGGGGGATCCCTaGGCATCCGGGTCGCTGACGCCCAGGTGGCGCAGATGGGCACGG +
Preference number: 6 (lower is better)
Translates to: PSLLMSPWSTSMGDP*ASGSLTPRWRRWAR
Trigger: CCGTGCCCATCTGCGCCACCTGGGCGTCAGCGACCCGGATGCCAAGGGATCCCCCATAGACGTGCTCCACGGGCTCATCAGGAGGGACGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS CAA 72 bp TTCCCCCAGGGACTGGCCATACCCGAGGCCTTCAGCTaGGCCTTCTTGGCCGGCGGTGGGGGAGGGAGCAAG +
Preference number: 6 (lower is better)
Translates to: FPQGLAIPEAFS*AFLAGGGGGSK
Trigger: CTTGCTCCCTCCCCCACCGCCGGCCAAGAAGGCCAAGCTGAAGGCCTCGGGTATGGCCAGTCCCTGGGGGAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS TCA 72 bp CTCTCGATGTCCTCTCTTGGAGCGGGGCCTCGAGGATaGTCCGGGGCAGCCAGGCCACCTGCCAGTAACCCC +
Preference number: 6 (lower is better)
Translates to: LSMSSLGAGPRG*SGAARPPASNP
Trigger: GGGGTTACTGGCAGGTGGCCTGGCTGCCCCGGATCATCCTCGAGGCCCCGCTCCAAGAGAGGACATCGAGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000064694.14
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000165912.8
ENSMUST00000170603.3
ENSMUST00000170617.8
ENSMUST00000171728.3
ENSMUST00000236409.2
CDS CCA 72 bp TGCCGGCGGCCGAGAGATCCTGCTTCCCCCAGGGACTaGCCATACCCGAGGCCTTCAGCTTGGCCTTCTTGG +
Preference number: 6 (lower is better)
Translates to: CRRPRDPASPRD*PYPRPSAWPSW
Trigger: CCAAGAAGGCCAAGCTGAAGGCCTCGGGTATGGCCAGTCCCTGGGGGAAGCAGGATCTCTCGGCCGCCGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS CAA 72 bp CTGATGAGCCCGTGGAGCACGTCTATGGGGGATCCCTaGGCATCCGGGTCGCTGACGCCCAGGTGGCGCAGA +
Preference number: 6 (lower is better)
Translates to: LMSPWSTSMGDP*ASGSLTPRWRR
Trigger: TCTGCGCCACCTGGGCGTCAGCGACCCGGATGCCAAGGGATCCCCCATAGACGTGCTCCACGGGCTCATCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS GCA 72 bp TCAGAGGCCCAGAAAATGCCGGCGGCCGAGAGATCCTaGTTCCCCCAGGGACTGGCCATACCCGAGGCCTTC +
Preference number: 6 (lower is better)
Translates to: SEAQKMPAAERS*FPQGLAIPEAF
Trigger: GAAGGCCTCGGGTATGGCCAGTCCCTGGGGGAAGCAGGATCTCTCGGCCGCCGGCATTTTCTGGGCCTCTGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS CCA 72 bp AGGCGGATCTGGATGCCGTCCCTCCTGATGAGCCCGTaGAGCACGTCTATGGGGGATCCCTTGGCATCCGGG +
Preference number: 6 (lower is better)
Translates to: RRIWMPSLLMSP*STSMGDPLASG
Trigger: CCCGGATGCCAAGGGATCCCCCATAGACGTGCTCCACGGGCTCATCAGGAGGGACGGCATCCAGATCCGCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169488.10
CDS CCA 72 bp CTGGGCCTCAGTTTTCCAATCCAGCTGCTGATCCGATaGGTGGCGGAGGTGGCACGGGGGAGGGCTTCGCTG +
Preference number: 6 (lower is better)
Translates to: LGLSFPIQLLIR*VAEVARGRASL
Trigger: CAGCGAAGCCCTCCCCCGTGCCACCTCCGCCACCCATCGGATCAGCAGCTGGATTGGAAAACTGAGGCCCAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171728.3
CDS CAA 72 bp CTGACACCCACTCGGTTCAGGTGGCCCCGGACATGGTaGGCTAGCCCGATAACGATACCATTGTGGAAACGA +
Preference number: 6 (lower is better)
Translates to: LTPTRFRWPRTW*ASPITIPLWKR
Trigger: TCGTTTCCACAATGGTATCGTTATCGGGCTAGCCAACCATGTCCGGGGCCACCTGAACCGAGTGGGTGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236409.2
CDS TCA 72 bp TTCTGCCATCCAGAATGTCTCGAGGGCCTTCTTTGGTaGTTGGCAGGTAATGAGAAGATGGAAAGATATCAC +
Preference number: 6 (lower is better)
Translates to: FCHPECLEGLLW*LAGNEKMERYH
Trigger: GTGATATCTTTCCATCTTCTCATTACCTGCCAATCACCAAAGAAGGCCCTCGAGACATTCTGGATGGCAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000064694.14
ENSMUST00000087703.12
ENSMUST00000163107.9
ENSMUST00000165912.8
ENSMUST00000170603.3
ENSMUST00000170617.8
ENSMUST00000171728.3
ENSMUST00000236409.2