RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WIPI2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029578

Ensembl transcript IDs: ENSMUST00000036872.16, ENSMUST00000110778.2

Found 217 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCTGCCTCATACTGTTTGGCTCCTCGGATGCTCCAGGGCACAGGTaGCAACAGCAGCCAGAGCTAACAGTGGGCGCCCCTCAAACCCCA +
Preference number: 1 (lower is better)
Translates to: PCLILFGSSDAPGHR*QQQPELTVGAPQTP
Trigger: TGGGGTTTGAGGGGCGCCCACTGTTAGCTCTGGCTGCTGTTGGCACCTGTGCCCTGGAGCATCCGAGGAGCCAAACAGTATGAGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp AGAGGCCACTGTCCACTGGTGCCCTGGCTGGTCTTGGTGGGCACATaGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGC +
Preference number: 1 (lower is better)
Translates to: RGHCPLVPWLVLVGT*ALSLQNHCTQTSSC
Trigger: GCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 90 bp AGCACACGCAGCCTAACCCTGCCTCATACTGTTTGGCTCCTCGGATaGTCCAGGGCACAGGTGCCAACAGCAGCCAGAGCTAACAGTGGG +
Preference number: 1 (lower is better)
Translates to: STRSLTLPHTVWLLG*SRAQVPTAARANSG
Trigger: CCCACTGTTAGCTCTGGCTGCTGTTGGCACCTGTGCCCTGGAGCATCCGAGGAGCCAAACAGTATGAGGCAGGGTTAGGCTGCGTGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp CCCAGAGCACAAAGCCAAGGTCACCAGCACAACAGCCACACTCTTTaGTTCCAGGAAACCCCGGCTCCCAATCAGCCCCGTGTGCTTCCC +
Preference number: 1 (lower is better)
Translates to: PRAQSQGHQHNSHTL*FQETPAPNQPRVLP
Trigger: GGGAAGCACACGGGGCTGATTGGGAGCCGGGGTTTCCTGGAACCAAAGAGTGTGGCTGTTGTGCTGGTGACCTTGGCTTTGTGCTCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp TCATCCCCCGGGGAGACACTTCTCGCACAGTGTGAGGAGGGCACTTaGTCCAGCTCTCCTCACACCTGGGACACCAGATGTTCCGAACAA +
Preference number: 1 (lower is better)
Translates to: SSPGETLLAQCEEGT*SSSPHTWDTRCSEQ
Trigger: TTGTTCGGAACATCTGGTGTCCCAGGTGTGAGGAGAGCTGGACCAAGTGCCCTCCTCACACTGTGCGAGAAGTGTCTCCCCGGGGGATGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 90 bp CAGCCCTGTGAGGTAGGGTTCTCGTACAGTCCAACCTCAGACCCCTaGGACCTGCCCCTAGCTCACACTTGTTGGTGTAGGCAGGACAAG +
Preference number: 1 (lower is better)
Translates to: QPCEVGFSYSPTSDP*DLPLAHTCWCRQDK
Trigger: CTTGTCCTGCCTACACCAACAAGTGTGAGCTAGGGGCAGGTCTCAGGGGTCTGAGGTTGGACTGTACGAGAACCCTACCTCACAGGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 90 bp AGTGCTGACCTCAGCCAGCCACTCTCTCCTCCCTCACCTGAGGCCTaGGAGTGCTGTACAGATTGCCTGAGGTCACAGCCTAATCCTTTG +
Preference number: 1 (lower is better)
Translates to: SADLSQPLSPPSPEA*ECCTDCLRSQPNPL
Trigger: CAAAGGATTAGGCTGTGACCTCAGGCAATCTGTACAGCACTCGCAGGCCTCAGGTGAGGGAGGAGAGAGTGGCTGGCTGAGGTCAGCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 90 bp AGTGAGGAAACCTATGCTTTAGGGAGACGTGAACTCCACTGTCTGTaGGACCCCAGCTCCCTAGAGAGGCCTCAGCAGAGGGAGCTGAGC +
Preference number: 1 (lower is better)
Translates to: SEETYALGRRELHCL*DPSSLERPQQRELS
Trigger: GCTCAGCTCCCTCTGCTGAGGCCTCTCTAGGGAGCTGGGGTCTCACAGACAGTGGAGTTCACGTCTCCCTAAAGCATAGGTTTCCTCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 90 bp GACCTCAGCCAGCCACTCTCTCCTCCCTCACCTGAGGCCTGCGAGTaGTGTACAGATTGCCTGAGGTCACAGCCTAATCCTTTGCTTTTC +
Preference number: 1 (lower is better)
Translates to: DLSQPLSPPSPEACE*CTDCLRSQPNPLLF
Trigger: GAAAAGCAAAGGATTAGGCTGTGACCTCAGGCAATCTGTACAGCACTCGCAGGCCTCAGGTGAGGGAGGAGAGAGTGGCTGGCTGAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp AGTTTAAAGTCCAGCACACGCAGCCTAACCCTGCCTCATACTGTTTaGCTCCTCGGATGCTCCAGGGCACAGGTGCCAACAGCAGCCAGA +
Preference number: 1 (lower is better)
Translates to: SLKSSTRSLTLPHTV*LLGCSRAQVPTAAR
Trigger: TCTGGCTGCTGTTGGCACCTGTGCCCTGGAGCATCCGAGGAGCCAAACAGTATGAGGCAGGGTTAGGCTGCGTGTGCTGGACTTTAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp GGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGTTaGGATGTTCCAGGTGGGCTAGGCAGGACATTGCTGAAACTTGTG +
Preference number: 1 (lower is better)
Translates to: GAAALKLPESTRGQG*DVPGGLGRTLLKLV
Trigger: CACAAGTTTCAGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 90 bp TGTGAGAGCCAAGTTACCAAGCCGATTTGGCAGGAGCTGCAGCCTTaGAGCTCCCAGAATCCACAAGAGGGCAGGGTTGGGATGTTCCAG +
Preference number: 1 (lower is better)
Translates to: CESQVTKPIWQELQP*SSQNPQEGRVGMFQ
Trigger: CTGGAACATCCCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCGGCTTGGTAACTTGGCTCTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp CTTCATGCGTGCCCTGGCATGAGACCTGACAACTGTGGTTTGCTATaGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATC +
Preference number: 1 (lower is better)
Translates to: LHACPGMRPDNCGLL*SGHSTCSPMLAWHI
Trigger: GATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAACCACAGTTGTCAGGTCTCATGCCAGGGCACGCATGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CCA 90 bp GAAGCTCCCAGAATCCACAAGAGGGCAGGGTTGGGATGTTCCAGGTaGGCTAGGCAGGACATTGCTGAAACTTGTGGTCTCAACCCTGCA +
Preference number: 1 (lower is better)
Translates to: EAPRIHKRAGLGCSR*ARQDIAETCGLNPA
Trigger: TGCAGGGTTGAGACCACAAGTTTCAGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 90 bp AATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGAGACCTaGCAACTGTGGTTTGCTATGGAGTGGCCACTCCACTTGCTCTCC +
Preference number: 1 (lower is better)
Translates to: NHCTQTSSCVPWHET*QLWFAMEWPLHLLS
Trigger: GGAGAGCAAGTGGAGTGGCCACTCCATAGCAAACCACAGTTGTCAGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR TCA 90 bp CCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATaGGACCTGACAACTGTGGTTTGCTATGGAGTGGCCACTCCACTT +
Preference number: 1 (lower is better)
Translates to: PAESLHADFFMRALA*DLTTVVCYGVATPL
Trigger: AAGTGGAGTGGCCACTCCATAGCAAACCACAGTTGTCAGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR TCA 90 bp CCAAGTAACACACCTGCTGTCGAGCCTCGTCTCCAAGTCAAACTGTaGGAGCCAAGTTACCAAGCCGATTTGGCAGGAGCTGCAGCCTTG +
Preference number: 1 (lower is better)
Translates to: PSNTPAVEPRLQVKL*EPSYQADLAGAAAL
Trigger: CAAGGCTGCAGCTCCTGCCAAATCGGCTTGGTAACTTGGCTCTCACAGTTTGACTTGGAGACGAGGCTCGACAGCAGGTGTGTTACTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 90 bp AGTCAAACTGTGAGAGCCAAGTTACCAAGCCGATTTGGCAGGAGCTaGAGCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGTTGGGA +
Preference number: 1 (lower is better)
Translates to: SQTVRAKLPSRFGRS*SLEAPRIHKRAGLG
Trigger: TCCCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCGGCTTGGTAACTTGGCTCTCACAGTTTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp GGTTTGCTATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTaGCACATCACACATGCAAAGCAAGGAGACTCCACAGACTTCACC +
Preference number: 1 (lower is better)
Translates to: GLLWSGHSTCSPMLA*HITHAKQGDSTDFT
Trigger: GGTGAAGTCTGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 90 bp ACAACTGTGGTTTGCTATGGAGTGGCCACTCCACTTGCTCTCCTATaGTGGCTTGGCACATCACACATGCAAAGCAAGGAGACTCCACAG +
Preference number: 1 (lower is better)
Translates to: TTVVCYGVATPLALL*WLGTSHMQSKETPQ
Trigger: CTGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAACCACAGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 90 bp CCATGCTCCTGCCTCACTCTCTTGACTGCTGGGATTACAGGTGTGTaGCACACCGGATTCCAAAATGTTCTTACCTTTGAACCTGAGCCC +
Preference number: 1 (lower is better)
Translates to: PCSCLTLLTAGITGV*HTGFQNVLTFEPEP
Trigger: GGGCTCAGGTTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCCAGCAGTCAAGAGAGTGAGGCAGGAGCATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 90 bp ATGAGACCTGACAACTGTGGTTTGCTATGGAGTGGCCACTCCACTTaGTCTCCTATGCTGGCTTGGCACATCACACATGCAAAGCAAGGA +
Preference number: 1 (lower is better)
Translates to: MRPDNCGLLWSGHST*SPMLAWHITHAKQG
Trigger: TCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAACCACAGTTGTCAGGTCTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 90 bp ACTGGCCTCAAATTTACAGCCATGCTCCTGCCTCACTCTCTTGACTaGTGGGATTACAGGTGTGTGCCACACCGGATTCCAAAATGTTCT +
Preference number: 1 (lower is better)
Translates to: TGLKFTAMLLPHSLD*WDYRCVPHRIPKCS
Trigger: AGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCCAGCAGTCAAGAGAGTGAGGCAGGAGCATGGCTGTAAATTTGAGGCCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 90 bp GGCCTCAAATTTACAGCCATGCTCCTGCCTCACTCTCTTGACTGCTaGGATTACAGGTGTGTGCCACACCGGATTCCAAAATGTTCTTAC +
Preference number: 1 (lower is better)
Translates to: GLKFTAMLLPHSLDC*DYRCVPHRIPKCSY
Trigger: GTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCCAGCAGTCAAGAGAGTGAGGCAGGAGCATGGCTGTAAATTTGAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 90 bp AACAGTGGGCGCCCCTCAAACCCCAATTATGTGATTAGCTATCCTTaGACAGCAGAAACAGGGAACCTCAGCAGATTTAGCTACAGGCAC +
Preference number: 1 (lower is better)
Translates to: NSGRPSNPNYVISYP*TAETGNLSRFSYRH
Trigger: GTGCCTGTAGCTAAATCTGCTGAGGTTCCCTGTTTCTGCTGTTCAAGGATAGCTAATCACATAATTGGGGTTTGAGGGGCGCCCACTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 90 bp ACAGCCACGCCCTTGGGCTCCACTGTTAGGCTCTGTTCTTTAGAATaGAGATTTGAGGACCTCAACTTTTTATTCTATAGAGCTGAGAAT +
Preference number: 1 (lower is better)
Translates to: TATPLGSTVRLCSLE*RFEDLNFLFYRAEN
Trigger: ATTCTCAGCTCTATAGAATAAAAAGTTGAGGTCCTCAAATCTGCATTCTAAAGAACAGAGCCTAACAGTGGAGCCCAAGGGCGTGGCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 90 bp AACTGTATTTTCTCAACAGTATGGATAGGCTATAACTACAACCTCTaGTTTAAGTCTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTT +
Preference number: 1 (lower is better)
Translates to: NCIFSTVWIGYNYNL*FKSLPSSPSIQVKV
Trigger: AACTTTGACCTGAATTGAGGGAGAGGATGGCAGAGACTTAAAGCAGAGGTTGTAGTTATAGCCTATCCATACTGTTGAGAAAATACAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR-3UTR TCA 90 bp CGATTTGGCAGGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGCTCTCCTCCCTCACCTaGGGCCTGCGAGTGCTGTAC +
Preference number: 2 (lower is better)
Translates to: RFGRSCSLEAPRIHKRAGLSSLT*GLRVLY
Trigger: GTACAGCACTCGCAGGCCTCAGGTGAGGGAGGAGAG...CCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp CAGAGGCCACTGTCCACTGGTGCCCTGGCTGGTCTTGGTGGGCACATGGGCCCTCCACTTGCTCTCCTATaGTGGCTTGGCACATCACAC +
Preference number: 2 (lower is better)
Translates to: QRPLSTGALAGLGGHMGPPLALL*WLGTSH
Trigger: GTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGG...AGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR-3UTR GCA 90 bp AGGGCAAGAGGACTCCTGACAGAGGCCACTGTCCACTGGTGCCCTGGCTGGTCTCATGGGCCCTGTCCCTaGAGAATCACTGCACGCAGA +
Preference number: 2 (lower is better)
Translates to: RARGLLTEATVHWCPGWSHGPCP*RITARR
Trigger: TCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATG...AGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTGTCAGGAGTCCTCTTGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 90 bp ACAAGAGGGCAGGGTTGGGATGTTCCAGGTGGGCTAGGCAGGACATaGCTGAAACTTGTGGTCTCAACCCTGCAGTCACGGCCCAGGCGA +
Preference number: 2 (lower is better)
Translates to: TRGQGWDVPGGLGRT*LKLVVSTLQSRPRR
Trigger: TCGCCTGGGCCGTGACTGCAGGGTTGAGACCACAAGTTTCAGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTGCCCTCTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CCA 90 bp TTACCAAGCCGATTTGGCAGGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGGGCCAGCCCCAGCACTaGGTACCCACAGGACATGCC +
Preference number: 2 (lower is better)
Translates to: LPSRFGRSCSLEAPRIHKGQPQH*VPTGHA
Trigger: GGCATGTCCTGTGGGTACCCAGTGCTGGGGCTGGCC...CTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCGGCTTGGTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR TCA 90 bp CCTGCACCTAAAGCCATAGTCATGCAGAAGCCACAGCCACGCCCTTGGGCTCCACCCTGGCATGAGACCTaGCAACTGTGGTTTGCTATG +
Preference number: 2 (lower is better)
Translates to: PAPKAIVMQKPQPRPWAPPWHET*QLWFAM
Trigger: CATAGCAAACCACAGTTGTCAGGTCTCATGCCAGGG...TGGAGCCCAAGGGCGTGGCTGTGGCTTCTGCATGACTATGGCTTTAGGTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR TCA 90 bp GGCCAGCCCCAGCACTGGGTACCCACAGGACATGCCCCCACACACCTCACAACAGTGATTAGCTATCCTTaGACAGCAGAAACAGGGAAC +
Preference number: 2 (lower is better)
Translates to: GQPQHWVPTGHAPTHLTTVISYP*TAETGN
Trigger: GTTCCCTGTTTCTGCTGTTCAAGGATAGCTAATCAC...TGTTGTGAGGTGTGTGGGGGCATGTCCTGTGGGTACCCAGTGCTGGGGCTGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp GGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCACTGACAACTGTGGTTTaGTATGGAGTGGCCACTCCA +
Preference number: 2 (lower is better)
Translates to: GPVPAESLHADFFMRALALTTVV*YGVATP
Trigger: TGGAGTGGCCACTCCATAGCAAACCACAGTTGTCAG...TGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 90 bp AGGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGTaGGGATGTTCCAGGTGGGCTAGGCAGGACATTGCTGAAACTTGT +
Preference number: 2 (lower is better)
Translates to: RSCSLEAPRIHKRAG*GCSRWARQDIAETC
Trigger: ACAAGTTTCAGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp ACCCCTGCACCTAAAGCCATAGTCATGCAGAAGCCACAGCCACGCCCTTGGGCTACAGAGAGCAGAAACTaGCCCTCTCCCTCTCAAGAT +
Preference number: 2 (lower is better)
Translates to: TPAPKAIVMQKPQPRPWATESRN*PSPSQD
Trigger: ATCTTGAGAGGGAGAGGGGCAGTTTCTGCTCTCTGT...AGCCCAAGGGCGTGGCTGTGGCTTCTGCATGACTATGGCTTTAGGTGCAGGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CCA 90 bp TCAAAAGCAGACAGGCACAGGGCAGCACTGACATCTGACCTCACTTTCCTGCCCAATTGGGAGGGAAAATaGCCCAGGTGGGGCAGTAGG +
Preference number: 2 (lower is better)
Translates to: SKADRHRAALTSDLTFLPNWEGK*PRWGSR
Trigger: CCTACTGCCCCACCTGGGCCATTTTCCCTCCCAATT...GGGCAGGAAAGTGAGGTCAGATGTCAGTGCTGCCCTGTGCCTGTCTGCTTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CCA 90 bp CGATTTGGCAGGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGAGTCACAGTTATGGATaGGGACAGGAGGAGACAGAG +
Preference number: 2 (lower is better)
Translates to: RFGRSCSLEAPRIHKRAGSHSYG*GQEETE
Trigger: CTCTGTCTCCTCCTGTCCCCATCCATAACTGTGACT...CCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp CCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGAGACCTTTGGCACATCACACATaGAAAGCAAGGAGACTCCAC +
Preference number: 2 (lower is better)
Translates to: PCRITARRLLHACPGMRPLAHHT*KARRLH
Trigger: GTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAA...AGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR-3UTR GCA 90 bp TGTAGTCCCTCTTATCCGGCTGGATTAACCTGGTACCCCAACATTATCCAGATTGCCACTGTCCACTGGTaGCCTGGCTGGTCTTGGTGG +
Preference number: 2 (lower is better)
Translates to: CSPSYPAGLTWYPNIIQIATVHW*PGWSWW
Trigger: CCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGC...AATCTGGATAATGTTGGGGTACCAGGTTAATCCAGCCGGATAAGAGGGACTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CCA 90 bp AACCACACAGGCCTGAAGGCAGCTACCTGTAGTCCCTCTTATCCGGCTGGATTAAGTGTTGTCTGCTCCTaGGCCAGAGTTCACAGGTCA +
Preference number: 2 (lower is better)
Translates to: NHTGLKAATCSPSYPAGLSVVCS*ARVHRS
Trigger: TGACCTGTGAACTCTGGCCCAGGAGCAGACAACACT...TAATCCAGCCGGATAAGAGGGACTACAGGTAGCTGCCTTCAGGCCTGTGTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CAA 90 bp TGGTTTGCTATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTaGGCACATCACACATGCAAAGCAAGGAGACTCCACAGACTTCAC +
Preference number: 2 (lower is better)
Translates to: WFAMEWPLHLLSYAG*AHHTCKARRLHRLH
Trigger: GTGAAGTCTGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 90 bp ATGGAGCCTAGCACAGCAGTACCTGTAATTCCAACTCACAGGAAGTaGAGGCAGGGGGACTACTTTGAGTCTGAGACCAGCCTGGGCTAT +
Preference number: 2 (lower is better)
Translates to: MEPSTAVPVIPTHRK*RQGDYFESETSLGY
Trigger: ATAGCCCAGGCTGGTCTCAGACTCAAAGTAGTCCCCCTGCCTCAACTTCCTGTGAGTTGGAATTACAGGTACTGCTGTGCTAGGCTCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR TCA 90 bp GGGATTACAGGTGTGTGCCACACCGGATTCCAAAATGTTCTTACCTTTGAACCTGGGCAAGAGGACTCCTaGCAGAGGCCACTGTCCACT +
Preference number: 2 (lower is better)
Translates to: GITGVCHTGFQNVLTFEPGQEDS*QRPLST
Trigger: AGTGGACAGTGGCCTCTGTCAGGAGTCCTCTTGCCC...AGGTTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp CCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCCCAGGCAGTGTTGTCTaGTCCTGGGCCAGAGTTCAC +
Preference number: 2 (lower is better)
Translates to: PSSPSIQVKVHSSNAQVLPGSVV*SWARVH
Trigger: GTGAACTCTGGCCCAGGAGCAGACAACACTGCCTGG...GAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR-3UTR GCA 90 bp GTCTTGATAAAAGCTCGGATGTGCTGGCTTGGGCCTGTAGTTCCAGGACAAGGCCTGACAACTGTGGTTTaGTATGGAGTGGCCACTCCA +
Preference number: 2 (lower is better)
Translates to: VLIKARMCWLGPVVPGQGLTTVV*YGVATP
Trigger: TGGAGTGGCCACTCCATAGCAAACCACAGTTGTCAG...GCCTTGTCCTGGAACTACAGGCCCAAGCCAGCACATCCGAGCTTTTATCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp AGCTACAACGACTGGGGGCACGGGGCCATTGGAGCATGCATCTTTATGATGTCTAAGGCTCACCAAATTTaGACAGCCTGGCAAGACCAC +
Preference number: 2 (lower is better)
Translates to: SYNDWGHGAIGACIFMMSKAHQI*TAWQDH
Trigger: GTGGTCTTGCCAGGCTGTGCAAATTTGGTGAGCCTT...AGACATCATAAAGATGCATGCTCCAATGGCCCCGTGCCCCCAGTCGTTGTAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp CAAATCCAGAGTTGTTCCTTTTCTTTCCCTTGGGTTTCCCAAACCCCACAGAGTCCAGGCAGTGTTGTCTaGTCCTGGGCCAGAGTTCAC +
Preference number: 2 (lower is better)
Translates to: QIQSCSFSFPWVSQTPQSPGSVV*SWARVH
Trigger: GTGAACTCTGGCCCAGGAGCAGACAACACTGCCTGG...ACTCTGTGGGGTTTGGGAAACCCAAGGGAAAGAAAAGGAACAACTCTGGATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp ATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCACACATGCTCTGCTTTAAGTCTCTaGCATCCTCTCCCTCAATTC +
Preference number: 2 (lower is better)
Translates to: MEWPLHLLSYAGLAHHTCSALSL*HPLPQF
Trigger: GAATTGAGGGAGAGGATGGCAGAGACTTAAAGCAGA...GCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR-3UTR GCA 90 bp TCTGTAGGCCAGGTTTGCCCAGGAGTATATAGTCTAGACTGGCCTCAAATTTACCTGACCTCTGTGGGATaGACGGGCACATCTGTCCCA +
Preference number: 2 (lower is better)
Translates to: SVGQVCPGVYSLDWPQIYLTSVG*TGTSVP
Trigger: TGGGACAGATGTGCCCGTGCATCCCACAGAGGTCAG...GTAAATTTGAGGCCAGTCTAGACTATATACTCCTGGGCAAACCTGGCCTACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CCA 90 bp GGGATTACAGGTGTGTGCCACACCGGATTCCAAAATGTTCTTACCTTTGAACCTGGAAAATGGCCCAGGTaGGGCAGTAGGGCAAGAGGA +
Preference number: 2 (lower is better)
Translates to: GITGVCHTGFQNVLTFEPGKWPR*GSRARG
Trigger: TCCTCTTGCCCTACTGCCCCACCTGGGCCATTTTCC...AGGTTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp GTTTGCTATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCATCTGCTTTAAGTCTCTaGCATCCTCTCCCTCAATTC +
Preference number: 2 (lower is better)
Translates to: VCYGVATPLALLCWLGTSSALSL*HPLPQF
Trigger: GAATTGAGGGAGAGGATGGCAGAGACTTAAAGCAGA...TGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR-3UTR TCA 90 bp CAAATCCAGAGTTGTTCCTTTTCTTTCCCTTGGGTTTCCCAAACCCCACAGAGTATAACCACACAGGCCTaGAGGCAGCTACCTGTAGTC +
Preference number: 2 (lower is better)
Translates to: QIQSCSFSFPWVSQTPQSITTQA*RQLPVV
Trigger: GACTACAGGTAGCTGCCTTCAGGCCTGTGTGGTTAT...ACTCTGTGGGGTTTGGGAAACCCAAGGGAAAGAAAAGGAACAACTCTGGATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR GCA 90 bp CAAATCCAGAGTTGTTCCTTTTCTTTCCCTTGGGTTTCCCAAACCCCACAGAGTTGGTCATTGCTAGCATaGAGAGGGCAGGAGCTACAA +
Preference number: 2 (lower is better)
Translates to: QIQSCSFSFPWVSQTPQSWSLLA*RGQELQ
Trigger: TTGTAGCTCCTGCCCTCTGCATGCTAGCAATGACCA...ACTCTGTGGGGTTTGGGAAACCCAAGGGAAAGAAAAGGAACAACTCTGGATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CAA 90 bp GAGTTGATCTTGCCTCCAAATCCAGAGTTGTTCCTTTTCTTTCCCTaGGGTTTCCCAAACCCCACAGAGTACAAATATAGTCTAAGACAG +
Preference number: 2 (lower is better)
Translates to: ELILPPNPELFLFFP*GFPNPTEYKYSLRQ
Trigger: CTGTCTTAGACTATATTTGTACTCTGTGGGGTTTGGGAAACCCAAGGGAAAGAAAAGGAACAACTCTGGATTTGGAGGCAAGATCAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CCA 90 bp GTTAGGCTCTGTTCTTTAGAATGCAGATTTGAGGACCTCAACTTTTTATTCTATGCCAAGTCACAGTTATaGATGGGGACAGGAGGAGAC +
Preference number: 2 (lower is better)
Translates to: VRLCSLECRFEDLNFLFYAKSQL*MGTGGD
Trigger: GTCTCCTCCTGTCCCCATCCATAACTGTGACTTGGC...ATAGAATAAAAAGTTGAGGTCCTCAAATCTGCATTCTAAAGAACAGAGCCTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp CTCCTGACAGAGGCCACTGTCCACTGGTGCCCTGGCTaGTCTTGGTGGGCACATGGGCCCTGTCCCTGCAGA +
Preference number: 3 (lower is better)
Translates to: LLTEATVHWCPG*SWWAHGPCPCR
Trigger: TCTGCAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTGTCAGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CCA 72 bp AGGACTCCTGACAGAGGCCACTGTCCACTGGTGCCCTaGCTGGTCTTGGTGGGCACATGGGCCCTGTCCCTG +
Preference number: 3 (lower is better)
Translates to: RTPDRGHCPLVP*LVLVGTWALSL
Trigger: CAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTGTCAGGAGTCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 72 bp GCAAGAGGACTCCTGACAGAGGCCACTGTCCACTGGTaGCCTGGCTGGTCTTGGTGGGCACATGGGCCCTGT +
Preference number: 3 (lower is better)
Translates to: ARGLLTEATVHW*PGWSWWAHGPC
Trigger: ACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTGTCAGGAGTCCTCTTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR-3UTR CAA 90 bp TGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCTCAGCCAGGCAGTGTaGTCTGCTCCTGGGCCAGAG +
Preference number: 3 (lower is better)
Translates to: WALSLQNHCTQTSSCVPWLSQAV*SAPGPE
Trigger: CTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAG...CCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR TCA 72 bp GGCTTCATCCCCCGGGGAGACACTTCTCGCACAGTGTaGGGAGGGCACTTGGTCCAGCTCTCCTCACACCTG +
Preference number: 3 (lower is better)
Translates to: GFIPRGDTSRTV*GGHLVQLSSHL
Trigger: CAGGTGTGAGGAGAGCTGGACCAAGTGCCCTCCTCACACTGTGCGAGAAGTGTCTCCCCGGGGGATGAAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp TGTCCACTGGTGCCCTGGCTGGTCTTGGTGGGCACATaGGCCCTGTCCCTGCAGAATCACTGCACGCAGACT +
Preference number: 3 (lower is better)
Translates to: CPLVPWLVLVGT*ALSLQNHCTQT
Trigger: AGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 72 bp CCTGGCTGGTCTTGGTGGGCACATGGGCCCTGTCCCTaGAGAATCACTGCACGCAGACTTCTTCATGCGTGC +
Preference number: 3 (lower is better)
Translates to: PGWSWWAHGPCP*RITARRLLHAC
Trigger: GCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 72 bp TTGGTGGGCACATGGGCCCTGTCCCTGCAGAATCACTaGACGCAGACTTCTTCATGCGTGCCCTGGCATGAG +
Preference number: 3 (lower is better)
Translates to: LVGTWALSLQNH*TQTSSCVPWHE
Trigger: CTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATGTGCCCACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 72 bp GGTTCCAGGAAACCCCGGCTCCCAATCAGCCCCGTGTaGTTCCCACAGTCGGTTCCTGTGAAGGCCAGTTTT +
Preference number: 3 (lower is better)
Translates to: GSRKPRLPISPV*FPQSVPVKASF
Trigger: AAAACTGGCCTTCACAGGAACCGACTGTGGGAAGCACACGGGGCTGATTGGGAGCCGGGGTTTCCTGGAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp TCCAGCACACGCAGCCTAACCCTGCCTCATACTGTTTaGCTCCTCGGATGCTCCAGGGCACAGGTGCCAACA +
Preference number: 3 (lower is better)
Translates to: SSTRSLTLPHTV*LLGCSRAQVPT
Trigger: TGTTGGCACCTGTGCCCTGGAGCATCCGAGGAGCCAAACAGTATGAGGCAGGGTTAGGCTGCGTGTGCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp TGTTTATTGGAGTCCACTGCTGGCCAGCCCCAGCACTaGGTACCCACAGGACATGCCCCCACACACCTCACA +
Preference number: 3 (lower is better)
Translates to: CLLESTAGQPQH*VPTGHAPTHLT
Trigger: TGTGAGGTGTGTGGGGGCATGTCCTGTGGGTACCCAGTGCTGGGGCTGGCCAGCAGTGGACTCCAATAAACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CAA 90 bp AGGTGGGGCAGTAGGGCAAGAGGACTCCTGACAGAGGCCACTGTCCACTGGTGCCTCTCCTATGCTGGCTaGGCACATCACACATGCAAA +
Preference number: 3 (lower is better)
Translates to: RWGSRARGLLTEATVHWCLSYAG*AHHTCK
Trigger: TTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAG...GCACCAGTGGACAGTGGCCTCTGTCAGGAGTCCTCTTGCCCTACTGCCCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CAA 90 bp CCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGAGACCTGAGTGGCCACTCCACTaGCTCTCCTATGCTGGCTTG +
Preference number: 3 (lower is better)
Translates to: PCRITARRLLHACPGMRPEWPLH*LSYAGL
Trigger: CAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTC...AGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR TCA 72 bp ACAGGACATGCCCCCACACACCTCACAACAGCCCTGTaGGGTAGGGTTCTCGTACAGTCCAACCTCAGACCC +
Preference number: 3 (lower is better)
Translates to: TGHAPTHLTTAL*GRVLVQSNLRP
Trigger: GGGTCTGAGGTTGGACTGTACGAGAACCCTACCTCACAGGGCTGTTGTGAGGTGTGTGGGGGCATGTCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 72 bp CAGCCACTCTCTCCTCCCTCACCTGAGGCCTGCGAGTaGTGTACAGATTGCCTGAGGTCACAGCCTAATCCT +
Preference number: 3 (lower is better)
Translates to: QPLSPPSPEACE*CTDCLRSQPNP
Trigger: AGGATTAGGCTGTGACCTCAGGCAATCTGTACAGCACTCGCAGGCCTCAGGTGAGGGAGGAGAGAGTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp GCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGTTaGGATGTTCCAGGTGGGCTAGGCAGGACATTGCTG +
Preference number: 3 (lower is better)
Translates to: ALKLPESTRGQG*DVPGGLGRTLL
Trigger: CAGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CAA 90 bp GGGATTACAGGTGTGTGCCACACCGGATTCCAAAATGTTCTTACCTTTGAACCTGTGCCCTGGCTGGTCTaGGTGGGCACATGGGCCCTG +
Preference number: 3 (lower is better)
Translates to: GITGVCHTGFQNVLTFEPVPWLV*VGTWAL
Trigger: CAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCAC...AGGTTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 72 bp TCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATaGGACCTGACAACTGTGGTTTGCTATGGAGTGGCC +
Preference number: 3 (lower is better)
Translates to: SLHADFFMRALA*DLTTVVCYGVA
Trigger: GGCCACTCCATAGCAAACCACAGTTGTCAGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CCA 72 bp TGTGAGGAGGGCACTTGGTCCAGCTCTCCTCACACCTaGGACACCAGATGTTCCGAACAAGTGATCTGGTCA +
Preference number: 3 (lower is better)
Translates to: CEEGTWSSSPHT*DTRCSEQVIWS
Trigger: TGACCAGATCACTTGTTCGGAACATCTGGTGTCCCAGGTGTGAGGAGAGCTGGACCAAGTGCCCTCCTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 72 bp ACACCTGCTGTCGAGCCTCGTCTCCAAGTCAAACTGTaGGAGCCAAGTTACCAAGCCGATTTGGCAGGAGCT +
Preference number: 3 (lower is better)
Translates to: TPAVEPRLQVKL*EPSYQADLAGA
Trigger: AGCTCCTGCCAAATCGGCTTGGTAACTTGGCTCTCACAGTTTGACTTGGAGACGAGGCTCGACAGCAGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 72 bp TGGGAGCTTTCAGTTTTAGTGTTTATTGGAGTCCACTaGTGGCCAGCCCCAGCACTGGGTACCCACAGGACA +
Preference number: 3 (lower is better)
Translates to: WELSVLVFIGVH*WPAPALGTHRT
Trigger: TGTCCTGTGGGTACCCAGTGCTGGGGCTGGCCAGCAGTGGACTCCAATAAACACTAAAACTGAAAGCTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp TGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTaGCACATCACACATGCAAAGCAAGGAGACTCCACA +
Preference number: 3 (lower is better)
Translates to: WSGHSTCSPMLA*HITHAKQGDST
Trigger: TGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CCA 72 bp GAGCTTTCAGTTTTAGTGTTTATTGGAGTCCACTGCTaGCCAGCCCCAGCACTGGGTACCCACAGGACATGC +
Preference number: 3 (lower is better)
Translates to: ELSVLVFIGVHC*PAPALGTHRTC
Trigger: GCATGTCCTGTGGGTACCCAGTGCTGGGGCTGGCCAGCAGTGGACTCCAATAAACACTAAAACTGAAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp AGAATCCACAAGAGGGCAGGGTTGGGATGTTCCAGGTaGGCTAGGCAGGACATTGCTGAAACTTGTGGTCTC +
Preference number: 3 (lower is better)
Translates to: RIHKRAGLGCSR*ARQDIAETCGL
Trigger: GAGACCACAAGTTTCAGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTGCCCTCTTGTGGATTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 72 bp GACAACTGTGGTTTGCTATGGAGTGGCCACTCCACTTaGTCTCCTATGCTGGCTTGGCACATCACACATGCA +
Preference number: 3 (lower is better)
Translates to: DNCGLLWSGHST*SPMLAWHITHA
Trigger: TGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAACCACAGTTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR GCA 72 bp CATCACCTTTCTTGGTTCCAGGCTGCCCTGGTAGACTaGCAAGTTCACCTGTCAGAAGAGAAGGCACAGAGA +
Preference number: 3 (lower is better)
Translates to: HHLSWFQAALVD*QVHLSEEKAQR
Trigger: TCTCTGTGCCTTCTCTTCTGACAGGTGAACTTGGCAGTCTACCAGGGCAGCCTGGAACCAAGAAAGGTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 72 bp AATAAAGCCCTTGTGCTCAGCAGGCAGTTGTTAGTATaGATTTCCAACAGGCTTCATCCCCCGGGGAGACAC +
Preference number: 3 (lower is better)
Translates to: NKALVLSRQLLV*ISNRLHPPGRH
Trigger: GTGTCTCCCCGGGGGATGAAGCCTGTTGGAAATGCATACTAACAACTGCCTGCTGAGCACAAGGGCTTTATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 72 bp GAGCTAACAGTGGGCGCCCCTCAAACCCCAATTATGTaGTTAGCTATCCTTGAACAGCAGAAACAGGGAACC +
Preference number: 3 (lower is better)
Translates to: ELTVGAPQTPIM*LAILEQQKQGT
Trigger: GGTTCCCTGTTTCTGCTGTTCAAGGATAGCTAATCACATAATTGGGGTTTGAGGGGCGCCCACTGTTAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CCA 72 bp CATCTTTATGATGTCTTGATAAAAGCTCGGATGTGCTaGCTTGGGCCTGTAGTTCCAGGACAAGGCAGGCAG +
Preference number: 3 (lower is better)
Translates to: HLYDVLIKARMC*LGPVVPGQGRQ
Trigger: CTGCCTGCCTTGTCCTGGAACTACAGGCCCAAGCCAGCACATCCGAGCTTTTATCAAGACATCATAAAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR-3UTR CAA 90 bp TCAATCAATAAAGCCCTTGTGCTCAGCAGGCAGTTGTTAGTATGCATTTCCAACGAGTGGCCACTCCACTaGCTCTCCTATGCTGGCTTG +
Preference number: 3 (lower is better)
Translates to: SINKALVLSRQLLVCISNEWPLH*LSYAGL
Trigger: CAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTC...GTTGGAAATGCATACTAACAACTGCCTGCTGAGCACAAGGGCTTTATTGATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 72 bp ATCAAAAGCAGACAGGCACAGGGCAGCACTGACATCTaGCCTCACTTTCCTGCCCTTGTAAGACCAAAAGAA +
Preference number: 3 (lower is better)
Translates to: IKSRQAQGSTDI*PHFPALVRPKE
Trigger: TTCTTTTGGTCTTACAAGGGCAGGAAAGTGAGGTCAGATGTCAGTGCTGCCCTGTGCCTGTCTGCTTTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 72 bp CATCTTCCACCTAGCTTTGTAGGCAGAGAGCAGAGCTaGACAAAAACCATGCACTTGACTCTGGGAGCTTTC +
Preference number: 3 (lower is better)
Translates to: HLPPSFVGREQS*TKTMHLTLGAF
Trigger: GAAAGCTCCCAGAGTCAAGTGCATGGTTTTTGTTCAGCTCTGCTCTCTGCCTACAAAGCTAGGTGGAAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR TCA 72 bp CGCCCCTCAAACCCCAATTATGTGATTAGCTATCCTTaGACAGCAGAAACAGGGAACCTCAGCAGATTTAGC +
Preference number: 3 (lower is better)
Translates to: RPSNPNYVISYP*TAETGNLSRFS
Trigger: GCTAAATCTGCTGAGGTTCCCTGTTTCTGCTGTTCAAGGATAGCTAATCACATAATTGGGGTTTGAGGGGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 72 bp TGCCTCACTCTCTTGACTGCTGGGATTACAGGTGTGTaGCACACCGGATTCCAAAATGTTCTTACCTTTGAA +
Preference number: 3 (lower is better)
Translates to: CLTLLTAGITGV*HTGFQNVLTFE
Trigger: TTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCCAGCAGTCAAGAGAGTGAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR GCA 72 bp CCCTTGGGCTCCACTGTTAGGCTCTGTTCTTTAGAATaGAGATTTGAGGACCTCAACTTTTTATTCTATAGA +
Preference number: 3 (lower is better)
Translates to: PLGSTVRLCSLE*RFEDLNFLFYR
Trigger: TCTATAGAATAAAAAGTTGAGGTCCTCAAATCTGCATTCTAAAGAACAGAGCCTAACAGTGGAGCCCAAGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CAA 72 bp GACAGAGGCCACTGTCCACTGGTGCCCTGGCTGGTCTaGGTGGGCACATGGGCCCTGTCCCTGCAGAATCAC +
Preference number: 4 (lower is better)
Translates to: DRGHCPLVPWLV*VGTWALSLQNH
Trigger: GTGATTCTGCAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp GGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCAATGGCAGGCGGACAGTaGCGAAGGCCCTGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: GPVPAESLHADFFMRALAMAGGQ*RRPCPG
Trigger: ACCAGGGCAGGGCCTTCGCCACTGTCCGCCTGCCAT...TGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp GGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCAACATGCCGTCCATGCTaGAGGCCAGGGAGCAGATGC +
Preference number: 4 (lower is better)
Translates to: GPVPAESLHADFFMRALATCRPC*RPGSRC
Trigger: GCATCTGCTCCCTGGCCTTCAGCATGGACGGCATGT...TGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp CAGAGGCCACTGTCCACTGGTGCCCTGGCTGGTCTTGGTGGGCACATGGGCCCTAGGCCCTGCCCTGGTTaGACATTTCTGTCACTTGTG +
Preference number: 4 (lower is better)
Translates to: QRPLSTGALAGLGGHMGPRPCPG*TFLSLV
Trigger: CACAAGTGACAGAAATGTTCAACCAGGGCAGGGCCT...AGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp AGGGCAAGAGGACTCCTGACAGAGGCCACTGTCCACTGGTGCCCTGGCTGGTCTGCACATAGGCACCTTTaGCAGCTGCTGTGCCGTACG +
Preference number: 4 (lower is better)
Translates to: RARGLLTEATVHWCPGWSAHRHL*QLLCRT
Trigger: CGTACGGCACAGCAGCTGCCAAAGGTGCCTATGTGC...AGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTGTCAGGAGTCCTCTTGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CCA 90 bp GCCAGCCCCAGCACTGGGTACCCACAGGACATGCCCCCACACACCTCACAACAGGCGAAGGCCCTGCCCTaGTTGAACATTTCTGTCACT +
Preference number: 4 (lower is better)
Translates to: ASPSTGYPQDMPPHTSQQAKALP*LNISVT
Trigger: AGTGACAGAAATGTTCAACCAGGGCAGGGCCTTCGC...CTGTTGTGAGGTGTGTGGGGGCATGTCCTGTGGGTACCCAGTGCTGGGGCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CCA 90 bp GCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTCACTCGCCTCCCTCCTaGGGGTCCAGGTTGTACATG +
Preference number: 4 (lower is better)
Translates to: AAMLKSSARQCCLLLGQSHSPPS*GSRLYM
Trigger: CATGTACAACCTGGACCCCCAGGAGGGAGGCGAGTG...ACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAGCATTGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp GCCAGCCCCAGCACTGGGTACCCACAGGACATGCCCCCACACACCTCACAACAGGGCCACCAAGCTGCTTaGGAACAATCTCTCCACAAT +
Preference number: 4 (lower is better)
Translates to: ASPSTGYPQDMPPHTSQQGHQAA*EQSLHN
Trigger: ATTGTGGAGAGATTGTTCTCAAGCAGCTTGGTGGCC...CTGTTGTGAGGTGTGTGGGGGCATGTCCTGTGGGTACCCAGTGCTGGGGCTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR GCA 90 bp CATGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTCACACAATGAGCCGCTaGCTGTTCAGCTTCACAGCC +
Preference number: 4 (lower is better)
Translates to: HGPCPCRITARRLLHACPHTMSR*LFSFTA
Trigger: GGCTGTGAAGCTGAACAGGCAGCGGCTCATTGTGTG...AGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp GCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTCATCTGTGTAGGCTTTaGCAGCTGCTGTGCCGTACG +
Preference number: 4 (lower is better)
Translates to: AAMLKSSARQCCLLLGQSHLCRL*QLLCRT
Trigger: CGTACGGCACAGCAGCTGCCAAAGCCTACACAGATG...ACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAGCATTGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110778.2
3UTR CAA 72 bp ACAAAGCCAAGGTCACCAGCACAACAGCCACACTCTTaGGTTCCAGGAAACCCCGGCTCCCAATCAGCCCCG +
Preference number: 4 (lower is better)
Translates to: TKPRSPAQQPHS*VPGNPGSQSAP
Trigger: CGGGGCTGATTGGGAGCCGGGGTTTCCTGGAACCAAAGAGTGTGGCTGTTGTGCTGGTGACCTTGGCTTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp GCTCTCCTATGCTGGCTTGGCACATCACACATGCAAAGCAAGGAGACTCCACAGACATGCCGTCCATGCTaGAGGCCAGGGAGCAGATGC +
Preference number: 4 (lower is better)
Translates to: ALLCWLGTSHMQSKETPQTCRPC*RPGSRC
Trigger: GCATCTGCTCCCTGGCCTTCAGCATGGACGGCATGT...CTGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CAGAGGCCACTGTCCACTGGTGCCCTGGCTGGTCTTGGTGGGCACATGGGCCCTACAATCTCTCCACAATaGAGACATCTTCAGTGTCAG +
Preference number: 4 (lower is better)
Translates to: QRPLSTGALAGLGGHMGPTISPQ*RHLQCQ
Trigger: CTGACACTGAAGATGTCTGCATTGTGGAGAGATTGT...AGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGTGGCCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp AGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGATGGTGTCGAAGACCTaGACCTCTCCAATGCTCGCA +
Preference number: 4 (lower is better)
Translates to: SSNAQVLSQAVLSAPGPEMVSKT*TSPMLA
Trigger: TGCGAGCATTGGAGAGGTGCAGGTCTTCGACACCAT...CTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAGCATTGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTTCACAGGTCGCACTGTTTCGGTGTTaGTGGATGCGGAGAGGAACA +
Preference number: 4 (lower is better)
Translates to: LKSSARQCCLLLGQSSQVALFRC*WMRRGT
Trigger: TGTTCCTCTCCGCATCCAGCAACACCGAAACAGTGC...GACCTGTGAACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGTGGTCGTCTCCATACTaGCATCAAGCCTGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: PCPCRITARRLLHACPGMWSSPY*HQACAD
Trigger: GTCAGCACAGGCTTGATGGCAGTATGGAGACGACCA...CATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp ACTGTCCACTGGTGCCCTGGCTGGTCTTGGTGGGCACATGGGCCCTGTCCCTGCGTTCCCTTCTTAAAATaGCAAACCTTCAGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: TVHWCPGWSWWAHGPCPCVPFLK*QTFSFL
Trigger: CAGGAAGCTGAAGGTTTGCCATTTTAAGAAGGGAAC...GCAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp TGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGAATGCTCGCACTCCCTaGATACGCCAAGTAGCAGTT +
Preference number: 4 (lower is better)
Translates to: WALSLQNHCTQTSSCVPWNARTP*IRQVAV
Trigger: AACTGCTACTTGGCGTATCCAGGGAGTGCGAGCATT...CCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp CCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGCCTTCTCAGAAGCAGTaGCAAGCTTGGTCCCACTTG +
Preference number: 4 (lower is better)
Translates to: PCPCRITARRLLHACPGMPSQKQ*QAWSHL
Trigger: CAAGTGGGACCAAGCTTGCCACTGCTTCTGAGAAGG...CATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp AGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGCTGTTTCGGTGTTGCTaGATGCGGAGAGGAACATGC +
Preference number: 4 (lower is better)
Translates to: SSNAQVLSQAVLSAPGPELFRCC*MRRGTC
Trigger: GCATGTTCCTCTCCGCATCCAGCAACACCGAAACAG...CTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAGCATTGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp AAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTTCACAGGTCAGGGCGAAGGCCCTGCCCTaGTTGAACATTTCTGTCACT +
Preference number: 4 (lower is better)
Translates to: KSSARQCCLLLGQSSQVRAKALP*LNISVT
Trigger: AGTGACAGAAATGTTCAACCAGGGCAGGGCCTTCGC...CCTGACCTGTGAACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 72 bp CAGGGTTGGGATGTTCCAGGTGGGCTAGGCAGGACATaGCTGAAACTTGTGGTCTCAACCCTGCAGTCACGG +
Preference number: 4 (lower is better)
Translates to: QGWDVPGGLGRT*LKLVVSTLQSR
Trigger: CCGTGACTGCAGGGTTGAGACCACAAGTTTCAGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CAA 72 bp AGCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGTaGGGATGTTCCAGGTGGGCTAGGCAGGACATTGCT +
Preference number: 4 (lower is better)
Translates to: SLEAPRIHKRAG*GCSRWARQDIA
Trigger: AGCAATGTCCTGCCTAGCCCACCTGGAACATCCCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CAA 72 bp CCAAGTTACCAAGCCGATTTGGCAGGAGCTGCAGCCTaGAAGCTCCCAGAATCCACAAGAGGGCAGGGTTGG +
Preference number: 4 (lower is better)
Translates to: PSYQADLAGAAA*KLPESTRGQGW
Trigger: CCAACCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCGGCTTGGTAACTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp GCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTGGCCACCAAGCTGCTTaGGAACAATCTCTCCACAAT +
Preference number: 4 (lower is better)
Translates to: AAMLKSSARQCCLLLGQSGHQAA*EQSLHN
Trigger: ATTGTGGAGAGATTGTTCTCAAGCAGCTTGGTGGCC...ACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAGCATTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp AGGTGGGGCAGTAGGGCAAGAGGACTCCTGACAGAGGCCACTGTCCACTGGTGCGTTGTCATTGTTTATTaGCAGTGCACACAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: RWGSRARGLLTEATVHWCVVIVY*QCTQAC
Trigger: GCAGGCTTGTGTGCACTGTCAATAAACAATGACAAC...GCACCAGTGGACAGTGGCCTCTGTCAGGAGTCCTCTTGCCCTACTGCCCCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp CTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTTCACAGGTCCATTTCTGTCACTTGTaGGGGCAGGTAGCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: LKSSARQCCLLLGQSSQVHFCHL*GQVAGR
Trigger: TCTACCAGCTACCTGCCCTCACAAGTGACAGAAATG...GACCTGTGAACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp TGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGAACCGTGGGATCTTCTaGATTGTGGTTAGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: WALSLQNHCTQTSSCVPWNRGIF*IVVSEQ
Trigger: CTGCTCACTAACCACAATTCAGAAGATCCCACGGTT...CCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp CCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGGCTAAGGGGCAGTCATaGGATGCAGAGTCTACGATT +
Preference number: 4 (lower is better)
Translates to: PCPCRITARRLLHACPGMAKGQS*DAESTI
Trigger: AATCGTAGACTCTGCATCTCATGACTGCCCCTTAGC...CATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp GTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGAGGCCAGGGAGCAGATaGTCACACACCTCTTCACTC +
Preference number: 4 (lower is better)
Translates to: VHSSNAQVLSQAVLSAPGRPGSR*SHTSSL
Trigger: GAGTGAAGAGGTGTGTGAGCATCTGCTCCCTGGCCT...CCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAGCATTGCTGCTATGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp ATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCACACATGCAGCCAGTCCAGGTGGTaGGCTCTTCCGGAGGTTTTT +
Preference number: 4 (lower is better)
Translates to: MEWPLHLLSYAGLAHHTCSQSRW*ALPEVF
Trigger: AAAAACCTCCGGAAGAGCCCACCACCTGGACTGGCT...GCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp CCTGCACCTAAAGCCATAGTCATGCAGAAGCCACAGCCACGCCCTTGGGCTCCATGTAGGCTTCTAAGTTaGCGTCCTGCCCTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: PAPKAIVMQKPQPRPWAPCRLLS*RPALSQ
Trigger: TTGGGAAAGGGCAGGACGCCAACTTAGAAGCCTACA...TGGAGCCCAAGGGCGTGGCTGTGGCTTCTGCATGACTATGGCTTTAGGTGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp ATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCACACATGCAGGCCCTGCCCTGGTTaGACATTTCTGTCACTTGTG +
Preference number: 4 (lower is better)
Translates to: MEWPLHLLSYAGLAHHTCRPCPG*TFLSLV
Trigger: CACAAGTGACAGAAATGTTCAACCAGGGCAGGGCCT...GCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp TGGTCTTGGTGGGCACATGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCAATGGCCACCAAGCTaGTTGAGAACAATCTCTCCA +
Preference number: 4 (lower is better)
Translates to: WSWWAHGPCPCRITARRLQWPPS*LRTISP
Trigger: TGGAGAGATTGTTCTCAAGCAGCTTGGTGGCCATTG...AAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATGTGCCCACCAAGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp CATGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGGACTATCATGAGCTaGGATCATGTTTGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: HGPCPCRITARRLLHACPGTIMS*DHVCSS
Trigger: AGAGCTGCAAACATGATCCCAGCTCATGATAGTCCC...AGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp GGGATTACAGGTGTGTGCCACACCGGATTCCAAAATGTTCTTACCTTTGAACCTATGGCAGGCGGACAGTaGCGAAGGCCCTGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: GITGVCHTGFQNVLTFEPMAGGQ*RRPCPG
Trigger: ACCAGGGCAGGGCCTTCGCCACTGTCCGCCTGCCAT...AGGTTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CCA 90 bp CATGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTTCCTACCAGCAACCGTaGGATCTTCTGAATTGTGGT +
Preference number: 4 (lower is better)
Translates to: HGPCPCRITARRLLHACPSYQQP*DLLNCG
Trigger: ACCACAATTCAGAAGATCCCACGGTTGCTGGTAGGA...AGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 72 bp ATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTaGGCACATCACACATGCAAAGCAAGGAGACTCCAC +
Preference number: 4 (lower is better)
Translates to: MEWPLHLLSYAG*AHHTCKARRLH
Trigger: GTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp TTGCTATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCACAGCACTGTTTCGGTGTTaGTGGATGCGGAGAGGAACA +
Preference number: 4 (lower is better)
Translates to: LLWSGHSTCSPMLAWHITALFRC*WMRRGT
Trigger: TGTTCCTCTCCGCATCCAGCAACACCGAAACAGTGC...TGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp ATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCACACATGCAATGCTCGCACTCCCTaGATACGCCAAGTAGCAGTT +
Preference number: 4 (lower is better)
Translates to: MEWPLHLLSYAGLAHHTCNARTP*IRQVAV
Trigger: AACTGCTACTTGGCGTATCCAGGGAGTGCGAGCATT...GCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp TTGGTGGGCACATGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCACAGCTTCTGTCCCTCTaGAATGGAAAACACCCGAAT +
Preference number: 4 (lower is better)
Translates to: LVGTWALSLQNHCTQTSSQLLSL*NGKHPN
Trigger: ATTCGGGTGTTTTCCATTCCAGAGGGACAGAAGCTG...TGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATGTGCCCACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp GTCTTGATAAAAGCTCGGATGTGCTGGCTTGGGCCTGTAGTTCCAGGACAAGGCCTGTTTCGGTGTTGCTaGATGCGGAGAGGAACATGC +
Preference number: 4 (lower is better)
Translates to: VLIKARMCWLGPVVPGQGLFRCC*MRRGTC
Trigger: GCATGTTCCTCTCCGCATCCAGCAACACCGAAACAG...GCCTTGTCCTGGAACTACAGGCCCAAGCCAGCACATCCGAGCTTTTATCAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CAA 72 bp GTGTGTGCCACACCGGATTCCAAAATGTTCTTACCTTaGAACCTGAGCCCTGCTGAGGCTTGGCTCTACCGT +
Preference number: 4 (lower is better)
Translates to: VCATPDSKMFLP*NLSPAEAWLYR
Trigger: ACGGTAGAGCCAAGCCTCAGCAGGGCTCAGGTTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp GTCTTGATAAAAGCTCGGATGTGCTGGCTTGGGCCTGTAGTTCCAGGACAAGGCCATTTCTGTCACTTGTaGGGGCAGGTAGCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: VLIKARMCWLGPVVPGQGHFCHL*GQVAGR
Trigger: TCTACCAGCTACCTGCCCTCACAAGTGACAGAAATG...GCCTTGTCCTGGAACTACAGGCCCAAGCCAGCACATCCGAGCTTTTATCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR GCA 90 bp CTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGCACACAATGAGCCGCTaGCTGTTCAGCTTCACAGCC +
Preference number: 4 (lower is better)
Translates to: LPQFRSKFIAAMLKSSARHTMSR*LFSFTA
Trigger: GGCTGTGAAGCTGAACAGGCAGCGGCTCATTGTGTG...CCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGCCTGCACCTCTCCAATaGTCGCACTCCCTGGATACG +
Preference number: 4 (lower is better)
Translates to: LCHPLPQFRSKFIAAMLKPAPLQ*SHSLDT
Trigger: CGTATCCAGGGAGTGCGAGCATTGGAGAGGTGCAGG...CTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CGATTTGGCAGGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGAGGGCAGGGAGCTGGGATCATGTTTaGAGCTCTCAAGTTAATGGT +
Preference number: 4 (lower is better)
Translates to: RFGRSCSLEAPRIHKRAGSWDHV*SSQVNG
Trigger: ACCATTAACTTGAGAGCTGCAAACATGATCCCAGCT...CCCTGCCCTCTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR GCA 90 bp AAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTTCACAGGTCAGGAGCTGGGATCATGTTTaGAGCTCTCAAGTTAATGGT +
Preference number: 4 (lower is better)
Translates to: KSSARQCCLLLGQSSQVRSWDHV*SSQVNG
Trigger: ACCATTAACTTGAGAGCTGCAAACATGATCCCAGCT...CCTGACCTGTGAACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp AACCACACAGGCCTGAAGGCAGCTACCTGTAGTCCCTCTTATCCGGCTGGATTATCTAAGTTGGCGTCCTaGCCTTTCCCAAGTCTTGTG +
Preference number: 4 (lower is better)
Translates to: NHTGLKAATCSPSYPAGLSKLAS*PFPSLV
Trigger: CACAAGACTTGGGAAAGGGCAGGACGCCAACTTAGA...TAATCCAGCCGGATAAGAGGGACTACAGGTAGCTGCCTTCAGGCCTGTGTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CCA 90 bp AAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGTTCACAGGTCAGGGTTCCCTTCTTAAAATaGCAAACCTTCAGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: KSSARQCCLLLGQSSQVRVPFLK*QTFSFL
Trigger: CAGGAAGCTGAAGGTTTGCCATTTTAAGAAGGGAAC...CCTGACCTGTGAACTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp TGCTTTAAGTCTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCCACTCGCCTCCCTCCTaGGGGTCCAGGTTGTACATG +
Preference number: 4 (lower is better)
Translates to: CFKSLPSSPSIQVKVHSSHSPPS*GSRLYM
Trigger: CATGTACAACCTGGACCCCCAGGAGGGAGGCGAGTG...GCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAGACTTAAAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGAGACCTACAATCTCTCCACAATaGAGACATCTTCAGTGTCAG +
Preference number: 4 (lower is better)
Translates to: PCRITARRLLHACPGMRPTISPQ*RHLQCQ
Trigger: CTGACACTGAAGATGTCTGCATTGTGGAGAGATTGT...AGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp TCTGTAGGCCAGGTTTGCCCAGGAGTATATAGTCTAGACTGGCCTCAAATTTACCCTGCACCTCTCCAATaGTCGCACTCCCTGGATACG +
Preference number: 4 (lower is better)
Translates to: SVGQVCPGVYSLDWPQIYPAPLQ*SHSLDT
Trigger: CGTATCCAGGGAGTGCGAGCATTGGAGAGGTGCAGG...GTAAATTTGAGGCCAGTCTAGACTATATACTCCTGGGCAAACCTGGCCTACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CCA 90 bp GTTTGCTATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCAAAGCAGTGGCAAGCTTaGTCCCACTTGCATCAAAAG +
Preference number: 4 (lower is better)
Translates to: VCYGVATPLALLCWLGTSKQWQA*SHLHQK
Trigger: CTTTTGATGCAAGTGGGACCAAGCTTGCCACTGCTT...TGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp GCTCTCCTATGCTGGCTTGGCACATCACACATGCAAAGCAAGGAGACTCCACAGCAGCTTCTGTCCCTCTaGAATGGAAAACACCCGAAT +
Preference number: 4 (lower is better)
Translates to: ALLCWLGTSHMQSKETPQQLLSL*NGKHPN
Trigger: ATTCGGGTGTTTTCCATTCCAGAGGGACAGAAGCTG...CTGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 72 bp AGCACAGCAGTACCTGTAATTCCAACTCACAGGAAGTaGAGGCAGGGGGACTACTTTGAGTCTGAGACCAGC +
Preference number: 4 (lower is better)
Translates to: STAVPVIPTHRK*RQGDYFESETS
Trigger: GCTGGTCTCAGACTCAAAGTAGTCCCCCTGCCTCAACTTCCTGTGAGTTGGAATTACAGGTACTGCTGTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp CCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCGTCTCTCGGATGGTATaGAGTACCTTCATGTCCCGG +
Preference number: 4 (lower is better)
Translates to: PSSPSIQVKVHSSNAQVLVSRMV*STFMSR
Trigger: CCGGGACATGAAGGTACTTCATACCATCCGAGAGAC...GAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp GGGATTACAGGTGTGTGCCACACCGGATTCCAAAATGTTCTTACCTTTGAACCTAGGCCAGGGAGCAGATaGTCACACACCTCTTCACTC +
Preference number: 4 (lower is better)
Translates to: GITGVCHTGFQNVLTFEPRPGSR*SHTSSL
Trigger: GAGTGAAGAGGTGTGTGAGCATCTGCTCCCTGGCCT...AGGTTCAAAGGTAAGAACATTTTGGAATCCGGTGTGGCACACACCTGTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR GCA 90 bp TCCACTTGCTCTCCTATGCTGGCTTGGCACATCACACATGCAAAGCAAGGAGACCAGGTAGCTGGTAGATaGCATGAGAACCTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: STCSPMLAWHITHAKQGDQVAGR*HENLPK
Trigger: TTTGGGAAGGTTCTCATGGCATCTACCAGCTACCTG...GTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp ATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTGGTCGTCTCCATACTaGCATCAAGCCTGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: IQVKVHSSNAQVLSQAVLWSSPY*HQACAD
Trigger: GTCAGCACAGGCTTGATGGCAGTATGGAGACGACCA...CAACACTGCCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp TGCTTTAAGTCTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAGCCAGTCCAGGTGGTaGGCTCTTCCGGAGGTTTTT +
Preference number: 4 (lower is better)
Translates to: CFKSLPSSPSIQVKVHSSSQSRW*ALPEVF
Trigger: AAAAACCTCCGGAAGAGCCCACCACCTGGACTGGCT...GCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAGACTTAAAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp CATGGGCCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGATCTTCTGAATTGTaGTTAGTGAGCAGATGTTTT +
Preference number: 4 (lower is better)
Translates to: HGPCPCRITARRLLHACPGSSEL*LVSRCF
Trigger: AAAACATCTGCTCACTAACCACAATTCAGAAGATCC...AGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGGCCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 72 bp ACAGAGCATTTAACGACACTGACGACATCACCTTTCTaGGTTCCAGGCTGCCCTGGTAGACTGCCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: TEHLTTLTTSPF*VPGCPGRLPSS
Trigger: TGAACTTGGCAGTCTACCAGGGCAGCCTGGAACCAAGAAAGGTGATGTCGTCAGTGTCGTTAAATGCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp TGCTTTAAGTCTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCGTCTCTCGGATGGTATaGAGTACCTTCATGTCCCGG +
Preference number: 4 (lower is better)
Translates to: CFKSLPSSPSIQVKVHSSVSRMV*STFMSR
Trigger: CCGGGACATGAAGGTACTTCATACCATCCGAGAGAC...GCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAGACTTAAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp CTGGTAGACTGCCAAGTTCACCTGTCAGAAGAGAAGGCACAGAGAGCAGAAACTAACCGTGGGATCTTCTaGATTGTGGTTAGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: LVDCQVHLSEEKAQRAETNRGIF*IVVSEQ
Trigger: CTGCTCACTAACCACAATTCAGAAGATCCCACGGTT...AGTTTCTGCTCTCTGTGCCTTCTCTTCTGACAGGTGAACTTGGCAGTCTACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR GCA 90 bp ATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCACACATGCCATCTTCAGTGTCAGTaGATTCATAGATCTGTTCCA +
Preference number: 4 (lower is better)
Translates to: MEWPLHLLSYAGLAHHTCHLQCQ*IHRSVP
Trigger: TGGAACAGATCTATGAATGCACTGACACTGAAGATG...GCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp TTACCAAGCCGATTTGGCAGGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGTCAAGTTTGAAGATGTaGACTGTTTCGGTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: LPSRFGRSCSLEAPRIHKSSLKM*TVSVLL
Trigger: CAGCAACACCGAAACAGTGCACATCTTCAAACTTGA...CTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCGGCTTGGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR TCA 90 bp ATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCACAGCCTCAAGTTTaGAGATGTGCACTGTTTCGG +
Preference number: 4 (lower is better)
Translates to: IQVKVHSSNAQVLSQAVLSQPQV*RCALFR
Trigger: CCGAAACAGTGCACATCTTCAAACTTGAGGCTGTGA...CAACACTGCCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp CTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCACAGCCTCAAGTTTaGAGATGTGCACTGTTTCGG +
Preference number: 4 (lower is better)
Translates to: LCHPLPQFRSKFIAAMLKSQPQV*RCALFR
Trigger: CCGAAACAGTGCACATCTTCAAACTTGAGGCTGTGA...CTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR TCA 90 bp TCTGTAGGCCAGGTTTGCCCAGGAGTATATAGTCTAGACTGGCCTCAAATTTACGCTAAGGGGCAGTCATaGGATGCAGAGTCTACGATT +
Preference number: 4 (lower is better)
Translates to: SVGQVCPGVYSLDWPQIYAKGQS*DAESTI
Trigger: AATCGTAGACTCTGCATCTCATGACTGCCCCTTAGC...GTAAATTTGAGGCCAGTCTAGACTATATACTCCTGGGCAAACCTGGCCTACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR GCA 90 bp GCTCTCCTATGCTGGCTTGGCACATCACACATGCAAAGCAAGGAGACTCCACAGCATCTTCAGTGTCAGTaGATTCATAGATCTGTTCCA +
Preference number: 4 (lower is better)
Translates to: ALLCWLGTSHMQSKETPQHLQCQ*IHRSVP
Trigger: TGGAACAGATCTATGAATGCACTGACACTGAAGATG...CTGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp TCTGCTTTAAGTCTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAATGGTGTCGAAGACCTaGACCTCTCCAATGCTCGCA +
Preference number: 4 (lower is better)
Translates to: SALSLCHPLPQFRSKFIAMVSKT*TSPMLA
Trigger: TGCGAGCATTGGAGAGGTGCAGGTCTTCGACACCAT...TGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAGACTTAAAGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTCAGGTAGCTGGTAGATaGCATGAGAACCTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: QFRSKFIAAMLKSSARQCQVAGR*HENLPK
Trigger: TTTGGGAAGGTTCTCATGGCATCTACCAGCTACCTG...ACACTGCCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp ATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCCTACCAGCAACCGTaGGATCTTCTGAATTGTGGT +
Preference number: 4 (lower is better)
Translates to: IQVKVHSSNAQVLSQAVLSYQQP*DLLNCG
Trigger: ACCACAATTCAGAAGATCCCACGGTTGCTGGTAGGA...CAACACTGCCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR GCA 90 bp CTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGTCAAGTTTGAAGATGTaGACTGTTTCGGTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: LPQFRSKFIAAMLKSSARSSLKM*TVSVLL
Trigger: CAGCAACACCGAAACAGTGCACATCTTCAAACTTGA...CCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CCA 90 bp GGCTATAACTACAACCTCTGCTTTAAGTCTCTGCCATCCTCTCCCTCAATTCAGAAGCAGTGGCAAGCTTaGTCCCACTTGCATCAAAAG +
Preference number: 4 (lower is better)
Translates to: GYNYNLCFKSLPSSPSIQKQWQA*SHLHQK
Trigger: CTTTTGATGCAAGTGGGACCAAGCTTGCCACTGCTT...CTGAATTGAGGGAGAGGATGGCAGAGACTTAAAGCAGAGGTTGTAGTTATAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
3UTR CAA 72 bp AACTCAATCAATAAAGCCCTTGTGCTCAGCAGGCAGTaGTTAGTATGCATTTCCAACAGGCTTCATCCCCCG +
Preference number: 4 (lower is better)
Translates to: NSINKALVLSRQ*LVCISNRLHPP
Trigger: CGGGGGATGAAGCCTGTTGGAAATGCATACTAACAACTGCCTGCTGAGCACAAGGGCTTTATTGATTGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
3UTR CAA 72 bp TGCTATTCCTTGTCAGACGCCAAAGAAGAGTTGATCTaGCCTCCAAATCCAGAGTTGTTCCTTTTCTTTCCC +
Preference number: 4 (lower is better)
Translates to: CYSLSDAKEELI*PPNPELFLFFP
Trigger: GGGAAAGAAAAGGAACAACTCTGGATTTGGAGGCAAGATCAACTCTTCTTTGGCGTCTGACAAGGAATAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CCA 90 bp GTTAGGCTCTGTTCTTTAGAATGCAGATTTGAGGACCTCAACTTTTTATTCTATCCTTCTCAGAAGCAGTaGCAAGCTTGGTCCCACTTG +
Preference number: 4 (lower is better)
Translates to: VRLCSLECRFEDLNFLFYPSQKQ*QAWSHL
Trigger: CAAGTGGGACCAAGCTTGCCACTGCTTCTGAGAAGG...ATAGAATAAAAAGTTGAGGTCCTCAAATCTGCATTCTAAAGAACAGAGCCTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CCA 90 bp TGTAGTCCCTCTTATCCGGCTGGATTAACCTGGTACCCCAACATTATCCAGATTGGATCTTCTGAATTGTaGTTAGTGAGCAGATGTTTT +
Preference number: 4 (lower is better)
Translates to: CSPSYPAGLTWYPNIIQIGSSEL*LVSRCF
Trigger: AAAACATCTGCTCACTAACCACAATTCAGAAGATCC...AATCTGGATAATGTTGGGGTACCAGGTTAATCCAGCCGGATAAGAGGGACTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CAA 90 bp ACTGTCCACTGGTGCCCTGGCTGGTCTTGGTGGGCACATGGGCCCTGTCCCTGCTGGCCACCAAGCTGCTaGAGAACAATCTCTCCACAA +
Preference number: 5 (lower is better)
Translates to: TVHWCPGWSWWAHGPCPCWPPSC*RTISPQ
Trigger: TTGTGGAGAGATTGTTCTCAAGCAGCTTGGTGGCCA...GCAGGGACAGGGCCCATGTGCCCACCAAGACCAGCCAGGGCACCAGTGGACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS TCA 90 bp TCTACGATTTCACTGGTCGTCTCCATACTGCCATCAAGCCTGTGCTaGCGCATCAGCGCACACTCGCCTCCCTCCTGGGGGTCCAGGTTG +
Preference number: 5 (lower is better)
Translates to: STISLVVSILPSSLC*RISAHSPPSWGSRL
Trigger: CAACCTGGACCCCCAGGAGGGAGGCGAGTGTGCGCTGATGCGTCAGCACAGGCTTGATGGCAGTATGGAGACGACCAGTGAAATCGTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CCA 90 bp GCCCTTTCCCAAGTCTTGTGGGGGACGAGGGCACATAGGCACCTTTaGCAGCTGCTGTGCCGTACGTCTGTGTTGCTAAGGGGCAGTCAT +
Preference number: 5 (lower is better)
Translates to: ALSQVLWGTRAHRHL*QLLCRTSVLLRGSH
Trigger: ATGACTGCCCCTTAGCAACACAGACGTACGGCACAGCAGCTGCCAAAGGTGCCTATGTGCCCTCGTCCCCCACAAGACTTGGGAAAGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS GCA 90 bp GTCTTGTGGGGGACGAGGGCACATAGGCACCTTTGGCAGCTGCTGTaGCGTACGTCTGTGTTGCTAAGGGGCAGTCATGAGATGCAGAGT +
Preference number: 5 (lower is better)
Translates to: VLWGTRAHRHLWQLL*RTSVLLRGSHEMQS
Trigger: ACTCTGCATCTCATGACTGCCCCTTAGCAACACAGACGTACGGCACAGCAGCTGCCAAAGGTGCCTATGTGCCCTCGTCCCCCACAAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS CCA 90 bp GAATCATGGGAGGATGTTCGCTGTCTTCATCCAGGCGCAGAGCGCTaGCTTCATCCTCTAGGCATGCACCACCCACAGCACCCAGGTCAT +
Preference number: 5 (lower is better)
Translates to: ESWEDVRCLHPGAER*LHPLGMHHPQHPGH
Trigger: ATGACCTGGGTGCTGTGGGTGGTGCATGCCTAGAGGATGAAGCCAGCGCTCTGCGCCTGGATGAAGACAGCGAACATCCTCCCATGATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp ACCCCTGCACCTAAAGCCATAGTCATGCAGAAGCCACAGCCACGCCCTTGGGCTCAAGCTTGGTCCCACTaGCATCAAAAGCCAGGGCTG +
Preference number: 5 (lower is better)
Translates to: TPAPKAIVMQKPQPRPWAQAWSH*HQKPGL
Trigger: CAGCCCTGGCTTTTGATGCAAGTGGGACCAAGCTTG...AGCCCAAGGGCGTGGCTGTGGCTTCTGCATGACTATGGCTTTAGGTGCAGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CAA 90 bp CCCTGTCCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGTGGCCACCAAGCTGCTaGAGAACAATCTCTCCACAA +
Preference number: 5 (lower is better)
Translates to: PCPCRITARRLLHACPGMWPPSC*RTISPQ
Trigger: TTGTGGAGAGATTGTTCTCAAGCAGCTTGGTGGCCA...CATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGGACAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp TTACCAAGCCGATTTGGCAGGAGCTGCAGCCTTGAAGCTCCCAGAATCCACAAGAGCTTCCTGGGAGCTTaGAGGCTGACAATGGCCACC +
Preference number: 5 (lower is better)
Translates to: LPSRFGRSCSLEAPRIHKSFLGA*RLTMAT
Trigger: GGTGGCCATTGTCAGCCTCAAAGCTCCCAGGAAGCT...CTTGTGGATTCTGGGAGCTTCAAGGCTGCAGCTCCTGCCAAATCGGCTTGGTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS GCA 90 bp GGCTCTTCCGGAGGTTTTTCCCTCACAGCCTCAAGTTTGAAGATGTaGACTGTTTCGGTGTTGCTGGATGCGGAGAGGAACATGCCGTCC +
Preference number: 5 (lower is better)
Translates to: GSSGGFSLTASSLKM*TVSVLLDAERNMPS
Trigger: GGACGGCATGTTCCTCTCCGCATCCAGCAACACCGAAACAGTGCACATCTTCAAACTTGAGGCTGTGAGGGAAAAACCTCCGGAAGAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp GCTCTCCTATGCTGGCTTGGCACATCACACATGCAAAGCAAGGAGACTCCACAGTGCACTGTTTCGGTGTaGCTGGATGCGGAGAGGAAC +
Preference number: 5 (lower is better)
Translates to: ALLCWLGTSHMQSKETPQCTVSV*LDAERN
Trigger: GTTCCTCTCCGCATCCAGCAACACCGAAACAGTGCA...CTGTGGAGTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp AGCAGCAATGCTCAAGTCCTCAGCCAGGCAGTGTTGTCTGCTCCTGGGCCAGAGCTCACAGCCTCAAGTTaGAAGATGTGCACTGTTTCG +
Preference number: 5 (lower is better)
Translates to: SSNAQVLSQAVLSAPGPELTASS*KMCTVS
Trigger: CGAAACAGTGCACATCTTCAAACTTGAGGCTGTGAG...CTCTGGCCCAGGAGCAGACAACACTGCCTGGCTGAGGACTTGAGCATTGCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGAGACCTAAGGCCCTGCCCTGGTaGAACATTTCTGTCACTTGT +
Preference number: 5 (lower is better)
Translates to: PCRITARRLLHACPGMRPKALPW*NISVTC
Trigger: ACAAGTGACAGAAATGTTCAACCAGGGCAGGGCCTT...AGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS TCA 90 bp AGGTGGTGGGCTCTTCCGGAGGTTTTTCCCTCACAGCCTCAAGTTTaGAGATGTGCACTGTTTCGGTGTTGCTGGATGCGGAGAGGAACA +
Preference number: 5 (lower is better)
Translates to: RWWALPEVFPSQPQV*RCALFRCCWMRRGT
Trigger: TGTTCCTCTCCGCATCCAGCAACACCGAAACAGTGCACATCTTCAAACTTGAGGCTGTGAGGGAAAAACCTCCGGAAGAGCCCACCACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS TCA 90 bp TTGGCAGCTGCTGTGCCGTACGTCTGTGTTGCTAAGGGGCAGTCATaGGATGCAGAGTCTACGATTTCACTGGTCGTCTCCATACTGCCA +
Preference number: 5 (lower is better)
Translates to: LAAAVPYVCVAKGQS*DAESTISLVVSILP
Trigger: TGGCAGTATGGAGACGACCAGTGAAATCGTAGACTCTGCATCTCATGACTGCCCCTTAGCAACACAGACGTACGGCACAGCAGCTGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CCA 90 bp GTGTTGCTAAGGGGCAGTCATGAGATGCAGAGTCTACGATTTCACTaGTCGTCTCCATACTGCCATCAAGCCTGTGCTGACGCATCAGCG +
Preference number: 5 (lower is better)
Translates to: VLLRGSHEMQSLRFH*SSPYCHQACADASA
Trigger: CGCTGATGCGTCAGCACAGGCTTGATGGCAGTATGGAGACGACCAGTGAAATCGTAGACTCTGCATCTCATGACTGCCCCTTAGCAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGAGACCTCTCACAGCCTCAAGTTaGAAGATGTGCACTGTTTCG +
Preference number: 5 (lower is better)
Translates to: PCRITARRLLHACPGMRPLTASS*KMCTVS
Trigger: CGAAACAGTGCACATCTTCAAACTTGAGGCTGTGAG...AGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGGCCCTTTCCCAAGTCTaGTGGGGGACGAGGGCACAT +
Preference number: 5 (lower is better)
Translates to: LCHPLPQFRSKFIAAMLKALSQV*WGTRAH
Trigger: ATGTGCCCTCGTCCCCCACAAGACTTGGGAAAGGGC...CTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CAA 90 bp CTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGCAAGCTTGGTCCCACTaGCATCAAAAGCCAGGGCTG +
Preference number: 5 (lower is better)
Translates to: LPQFRSKFIAAMLKSSARQAWSH*HQKPGL
Trigger: CAGCCCTGGCTTTTGATGCAAGTGGGACCAAGCTTG...CCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGTGCACTGTTTCGGTGTaGCTGGATGCGGAGAGGAAC +
Preference number: 5 (lower is better)
Translates to: LPQFRSKFIAAMLKSSARCTVSV*LDAERN
Trigger: GTTCCTCTCCGCATCCAGCAACACCGAAACAGTGCA...CCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp GTTTGCTATGGAGTGGCCACTCCACTTGCTCTCCTATGCTGGCTTGGCACATCAAGTGAGCAGATGTTTTaGTGGCCACAGAATGGCAGG +
Preference number: 5 (lower is better)
Translates to: VCYGVATPLALLCWLGTSSEQMF*WPQNGR
Trigger: CCTGCCATTCTGTGGCCACAAAAACATCTGCTCACT...TGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGAGTGGCCACTCCATAGCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CTGGTAGACTGCCAAGTTCACCTGTCAGAAGAGAAGGCACAGAGAGCAGAAACTTGCCGTACGTCTGTGTaGCTAAGGGGCAGTCATGAG +
Preference number: 5 (lower is better)
Translates to: LVDCQVHLSEEKAQRAETCRTSV*LRGSHE
Trigger: CTCATGACTGCCCCTTAGCAACACAGACGTACGGCA...AGTTTCTGCTCTCTGTGCCTTCTCTTCTGACAGGTGAACTTGGCAGTCTACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CAA 90 bp CTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGTGCCGTACGTCTGTGTaGCTAAGGGGCAGTCATGAG +
Preference number: 5 (lower is better)
Translates to: LPQFRSKFIAAMLKSSARCRTSV*LRGSHE
Trigger: CTCATGACTGCCCCTTAGCAACACAGACGTACGGCA...CCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGCTCAAGTCCTCAGCCAGGGACGTGTTATCCTGGTaGAAGTTGGCGAACAGCAGC +
Preference number: 5 (lower is better)
Translates to: LPQFRSKFIAAMLKSSARDVLSW*KLANSS
Trigger: GCTGCTGTTCGCCAACTTCAACCAGGATAACACGTC...CCTGGCTGAGGACTTGAGCATTGCTGCTATGAACTTTGACCTGAATTGAGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CCCTGCAGAATCACTGCACGCAGACTTCTTCATGCGTGCCCTGGCATGAGACCTAGTTGTCATTGTTTATaGACAGTGCACACAAGCCTG +
Preference number: 5 (lower is better)
Translates to: PCRITARRLLHACPGMRPSCHCL*TVHTSL
Trigger: CAGGCTTGTGTGCACTGTCAATAAACAATGACAACT...AGGTCTCATGCCAGGGCACGCATGAAGAAGTCTGCGTGCAGTGATTCTGCAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp TCCACTTGCTCTCCTATGCTGGCTTGGCACATCACACATGCAAAGCAAGGAGACAAGGCCCTGCCCTGGTaGAACATTTCTGTCACTTGT +
Preference number: 5 (lower is better)
Translates to: STCSPMLAWHITHAKQGDKALPW*NISVTC
Trigger: ACAAGTGACAGAAATGTTCAACCAGGGCAGGGCCTT...GTCTCCTTGCTTTGCATGTGTGATGTGCCAAGCCAGCATAGGAGAGCAAGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CCA 90 bp ACACCTCTTCACTCCTCTCCTGAACTCAAACAGCTTCTGTCCCTCTaGAATGGAAAACACCCGAATCACAGTCCCCTTCTCAGAAGCAGT +
Preference number: 5 (lower is better)
Translates to: TPLHSSPELKQLLSL*NGKHPNHSPLLRSS
Trigger: ACTGCTTCTGAGAAGGGGACTGTGATTCGGGTGTTTTCCATTCCAGAGGGACAGAAGCTGTTTGAGTTCAGGAGAGGAGTGAAGAGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp TCTGCTTTAAGTCTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGACGTGTTATCCTGGTaGAAGTTGGCGAACAGCAGC +
Preference number: 5 (lower is better)
Translates to: SALSLCHPLPQFRSKFIADVLSW*KLANSS
Trigger: GCTGCTGTTCGCCAACTTCAACCAGGATAACACGTC...TGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAGACTTAAAGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS-3UTR CAA 90 bp CTGGTAGACTGCCAAGTTCACCTGTCAGAAGAGAAGGCACAGAGAGCAGAAACTAGTTGTCATTGTTTATaGACAGTGCACACAAGCCTG +
Preference number: 5 (lower is better)
Translates to: LVDCQVHLSEEKAQRAETSCHCL*TVHTSL
Trigger: CAGGCTTGTGTGCACTGTCAATAAACAATGACAACT...AGTTTCTGCTCTCTGTGCCTTCTCTTCTGACAGGTGAACTTGGCAGTCTACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS-3UTR CAA 90 bp TTAAGTCTCTGCCATCCTCTCCCTCAATTCAGGTCAAAGTTCATAGCAGCAATGAGTGAGCAGATGTTTTaGTGGCCACAGAATGGCAGG +
Preference number: 5 (lower is better)
Translates to: LSLCHPLPQFRSKFIAAMSEQMF*WPQNGR
Trigger: CCTGCCATTCTGTGGCCACAAAAACATCTGCTCACT...CATTGCTGCTATGAACTTTGACCTGAATTGAGGGAGAGGATGGCAGAGACTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS TCA 72 bp TCACTGGTCGTCTCCATACTGCCATCAAGCCTGTGCTaGCGCATCAGCGCACACTCGCCTCCCTCCTGGGGG +
Preference number: 6 (lower is better)
Translates to: SLVVSILPSSLC*RISAHSPPSWG
Trigger: CCCCCAGGAGGGAGGCGAGTGTGCGCTGATGCGTCAGCACAGGCTTGATGGCAGTATGGAGACGACCAGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CCA 72 bp GAGGATGTTCGCTGTCTTCATCCAGGCGCAGAGCGCTaGCTTCATCCTCTAGGCATGCACCACCCACAGCAC +
Preference number: 6 (lower is better)
Translates to: EDVRCLHPGAER*LHPLGMHHPQH
Trigger: GTGCTGTGGGTGGTGCATGCCTAGAGGATGAAGCCAGCGCTCTGCGCCTGGATGAAGACAGCGAACATCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CAA 90 bp CATCTGTGTAGGCTTCTAAGTTGGCGTCCTGCCCTTTCCCAAGTCTaGTGGGGGACGAGGGCACATAGGCACCTTTGGCAGCTGCTGTGC +
Preference number: 6 (lower is better)
Translates to: HLCRLLSWRPALSQV*WGTRAHRHLWQLLC
Trigger: GCACAGCAGCTGCCAAAGGTGCCTATGTGCCCTCGTCCCCCACAAGACTTGGGAAAGGGCAGGACGCCAACTTAGAAGCCTACACAGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS CCA 72 bp CTTCTAAGTTGGCGTCCTGCCCTTTCCCAAGTCTTGTaGGGGACGAGGGCACATAGGCACCTTTGGCAGCTG +
Preference number: 6 (lower is better)
Translates to: LLSWRPALSQVL*GTRAHRHLWQL
Trigger: CAGCTGCCAAAGGTGCCTATGTGCCCTCGTCCCCCACAAGACTTGGGAAAGGGCAGGACGCCAACTTAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS CCA 72 bp CACCACCCACAGCACCCAGGTCATCTGTGTAGGCTTTaGCAGCTGCTGTGCCGTACGTCTGTGTTGCTAAGG +
Preference number: 6 (lower is better)
Translates to: HHPQHPGHLCRL*QLLCRTSVLLR
Trigger: CCTTAGCAACACAGACGTACGGCACAGCAGCTGCCAAAGCCTACACAGATGACCTGGGTGCTGTGGGTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110778.2
CDS CAA 90 bp AGGGCACATAGGCACCTTTGGCAGCTGCTGTGCCGTACGTCTGTGTaGCTAAGGGGCAGTCATGAGATGCAGAGTCTACGATTTCACTGG +
Preference number: 6 (lower is better)
Translates to: RAHRHLWQLLCRTSV*LRGSHEMQSLRFHW
Trigger: CCAGTGAAATCGTAGACTCTGCATCTCATGACTGCCCCTTAGCAACACAGACGTACGGCACAGCAGCTGCCAAAGGTGCCTATGTGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036872.16
CDS TCA 72 bp GCTGTGCCGTACGTCTGTGTTGCTAAGGGGCAGTCATaGGATGCAGAGTCTACGATTTCACTGGTCGTCTCC +
Preference number: 6 (lower is better)
Translates to: AVPYVCVAKGQS*DAESTISLVVS
Trigger: GGAGACGACCAGTGAAATCGTAGACTCTGCATCTCATGACTGCCCCTTAGCAACACAGACGTACGGCACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CCA 72 bp GAATCACAGTCCCCTTCTCAGAAGCAGTGGCAAGCTTaGTCCCACTTGCATCAAAAGCCAGGGCTGCTAAGG +
Preference number: 6 (lower is better)
Translates to: ESQSPSQKQWQA*SHLHQKPGLLR
Trigger: CCTTAGCAGCCCTGGCTTTTGATGCAAGTGGGACCAAGCTTGCCACTGCTTCTGAGAAGGGGACTGTGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CAA 72 bp CGAATCACAGTCCCCTTCTCAGAAGCAGTGGCAAGCTaGGTCCCACTTGCATCAAAAGCCAGGGCTGCTAAG +
Preference number: 6 (lower is better)
Translates to: RITVPFSEAVAS*VPLASKARAAK
Trigger: CTTAGCAGCCCTGGCTTTTGATGCAAGTGGGACCAAGCTTGCCACTGCTTCTGAGAAGGGGACTGTGATTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CAA 90 bp GGTCATCTGTGTAGGCTTTGGCAGCTGCTGTGCCGTACGTCTGTGTaGCTAAGGGGCAGTCATGAGATGCAGAGTCTACGATTTCACTGG +
Preference number: 6 (lower is better)
Translates to: GHLCRLWQLLCRTSV*LRGSHEMQSLRFHW
Trigger: CCAGTGAAATCGTAGACTCTGCATCTCATGACTGCCCCTTAGCAACACAGACGTACGGCACAGCAGCTGCCAAAGCCTACACAGATGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110778.2
CDS TCA 72 bp GCTCTTCCGGAGGTTTTTCCCTCACAGCCTCAAGTTTaGAGATGTGCACTGTTTCGGTGTTGCTGGATGCGG +
Preference number: 6 (lower is better)
Translates to: ALPEVFPSQPQV*RCALFRCCWMR
Trigger: CCGCATCCAGCAACACCGAAACAGTGCACATCTTCAAACTTGAGGCTGTGAGGGAAAAACCTCCGGAAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS GCA 72 bp ATGCAGAGTCTACGATTTCACTGGTCGTCTCCATACTaGCATCAAGCCTGTGCTGACGCATCAGCGCACACT +
Preference number: 6 (lower is better)
Translates to: MQSLRFHWSSPY*HQACADASAHT
Trigger: AGTGTGCGCTGATGCGTCAGCACAGGCTTGATGGCAGTATGGAGACGACCAGTGAAATCGTAGACTCTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CAA 72 bp TCCCCTTCTCAGAAGCAGTGGCAAGCTTGGTCCCACTaGCATCAAAAGCCAGGGCTGCTAAGGGACTATCAT +
Preference number: 6 (lower is better)
Translates to: SPSQKQWQAWSH*HQKPGLLRDYH
Trigger: ATGATAGTCCCTTAGCAGCCCTGGCTTTTGATGCAAGTGGGACCAAGCTTGCCACTGCTTCTGAGAAGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS GCA 72 bp GGAGGTTTTTCCCTCACAGCCTCAAGTTTGAAGATGTaGACTGTTTCGGTGTTGCTGGATGCGGAGAGGAAC +
Preference number: 6 (lower is better)
Translates to: GGFSLTASSLKM*TVSVLLDAERN
Trigger: GTTCCTCTCCGCATCCAGCAACACCGAAACAGTGCACATCTTCAAACTTGAGGCTGTGAGGGAAAAACCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS CCA 72 bp CACTCCTCTCCTGAACTCAAACAGCTTCTGTCCCTCTaGAATGGAAAACACCCGAATCACAGTCCCCTTCTC +
Preference number: 6 (lower is better)
Translates to: HSSPELKQLLSL*NGKHPNHSPLL
Trigger: GAGAAGGGGACTGTGATTCGGGTGTTTTCCATTCCAGAGGGACAGAAGCTGTTTGAGTTCAGGAGAGGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2
CDS TCA 72 bp CCATCTGATGCTCCTACCAGCAACCGTGGGATCTTCTaGATTGTGGTTAGTGAGCAGATGTTTTTGTGGCCA +
Preference number: 6 (lower is better)
Translates to: PSDAPTSNRGIF*IVVSEQMFLWP
Trigger: TGGCCACAAAAACATCTGCTCACTAACCACAATTCAGAAGATCCCACGGTTGCTGGTAGGAGCATCAGATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000036872.16
ENSMUST00000110778.2