RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WIPF3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000086040

Ensembl transcript IDs: ENSMUST00000126637.8, ENSMUST00000132855.8, ENSMUST00000163746.8, ENSMUST00000172046.2

Found 336 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTaGCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTT +
Preference number: 1 (lower is better)
Translates to: RLAWLARESQGSACL*LPGNGIPNVYGTQL
Trigger: AAGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 90 bp ATTGCTGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTaGCTTGGCTGCATTCATCTGAGGAGCACCCCAGACACACACCAC +
Preference number: 1 (lower is better)
Translates to: IAAPAWSGPLSIQGS*LGCIHLRSTPDTHH
Trigger: GTGGTGTGTGTCTGGGGTGCTCCTCAGATGAATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCAGCAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp TTGAGACAATGTCACTTTCTGGAACCTGGGATTCCCCGATTAGCTTaGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCC +
Preference number: 1 (lower is better)
Translates to: LRQCHFLEPGIPRLA*LARESQGSACLCLP
Trigger: GGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAATCCCAGGTTCCAGAAAGTGACATTGTCTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 90 bp CCCTGCAGCTTGCAGATCGCTCATTTTGTGAGGTTGGCTGGGCACTaGCCTTCCCAGGATCAGCTGCCTCTACCCAACTTTACCCACTCC +
Preference number: 1 (lower is better)
Translates to: PCSLQIAHFVRLAGH*PSQDQLPLPNFTHS
Trigger: GGAGTGGGTAAAGTTGGGTAGAGGCAGCTGATCCTGGGAAGGTCAGTGCCCAGCCAACCTCACAAAATGAGCGATCTGCAAGCTGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp CTGGCTACCAGCATGGCGCTGGGAACATGGAGGGGCAGAAGGAAGTaGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTGGC +
Preference number: 1 (lower is better)
Translates to: LATSMALGTWRGRRK*RLGTRDAVNSKSIG
Trigger: GCCAATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCCCCTCCATGTTCCCAGCGCCATGCTGGTAGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 90 bp GGGCCCTGCGGAAGGCATGGGAGGGGCCACACCCACTCTAGCCTTTaGATTGGGATATATACATTAGGCAGCAAAATGGCATCCCTGTAC +
Preference number: 1 (lower is better)
Translates to: GPCGRHGRGHTHSSL*IGIYTLGSKMASLY
Trigger: GTACAGGGATGCCATTTTGCTGCCTAATGTATATATCCCAATGCAAAGGCTAGAGTGGGTGTGGCCCCTCCCATGCCTTCCGCAGGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp ACCAGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTaGGATAGGGCACCACCTGTACTAGACAGACAAATGCCAGGATGC +
Preference number: 1 (lower is better)
Translates to: TSLQACAIDTVDTTG*DRAPPVLDRQMPGC
Trigger: GCATCCTGGCATTTGTCTGTCTAGTACAGGTGGTGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp GGAGTTGCCACCGTATGTTTTGAGACAATGTCACTTTCTGGAACCTaGGATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATC +
Preference number: 1 (lower is better)
Translates to: GVATVCFETMSLSGT*DSPISLAGQGVAGI
Trigger: GATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAATCCCAGGTTCCAGAAAGTGACATTGTCTCAAAACATACGGTGGCAACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 90 bp CAAGAAGCAAAAGCATACTTCACTCCCTGGAGAATCAAAGAAGGGTaGAGATTGCTGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGG +
Preference number: 1 (lower is better)
Translates to: QEAKAYFTPWRIKEG*RLLPRPGVALCLFR
Trigger: CCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCAGCAATCTGCACCCTTCTTTGATTCTCCAGGGAGTGAAGTATGCTTTTGCTTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp AAAAATCTCATAAAGCTGACTTTACCCTGGCTACCAGCATGGCGCTaGGAACATGGAGGGGCAGAAGGAAGTGGAGACTGGGCACTAGGG +
Preference number: 1 (lower is better)
Translates to: KNLIKLTLPWLPAWR*EHGGAEGSGDWALG
Trigger: CCCTAGTGCCCAGTCTCCACTTCCTTCTGCCCCTCCATGTTCCCAGCGCCATGCTGGTAGCCAGGGTAAAGTCAGCTTTATGAGATTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 90 bp TTGAATGGAACCTTCACCTCTGTTCATGTGGCTGTTACAGTGGCTTaGGTCCTTACCCCAGAGATGTTGGAAACTTGGCCCTGGCTCAGT +
Preference number: 1 (lower is better)
Translates to: LNGTFTSVHVAVTVA*VLTPEMLETWPWLS
Trigger: ACTGAGCCAGGGCCAAGTTTCCAACATCTCTGGGGTAAGGACTCAAGCCACTGTAACAGCCACATGAACAGAGGTGAAGGTTCCATTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp GGCAAGAGAGTTGTCTGTGTTCTTCAGCTCAGTGGGAAGGACCTTTaGGCTGATGGCATTCCTACCAACGGGACCAGATATTTGAGATAT +
Preference number: 1 (lower is better)
Translates to: GKRVVCVLQLSGKDL*ADGIPTNGTRYLRY
Trigger: ATATCTCAAATATCTGGTCCCGTTGGTAGGAATGCCATCAGCCCAAAGGTCCTTCCCACTGAGCTGAAGAACACAGACAACTCTCTTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp GATGTGTGCACACATGTAATGTGTGAGCCTGTAAGAGGTCAACTTTaGGTGTTGTGGCCTCAGGAGTTGCCACCGTATGTTTTGAGACAA +
Preference number: 1 (lower is better)
Translates to: DVCTHVMCEPVRGQL*VLWPQELPPYVLRQ
Trigger: TTGTCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCCAAAGTTGACCTCTTACAGGCTCACACATTACATGTGTGCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 90 bp TGTATGCGTTTGTACATGGCTGTACATGTTCCTGTGTGGGATGTGTaGACACATGTAATGTGTGAGCCTGTAAGAGGTCAACTTTGGGTG +
Preference number: 1 (lower is better)
Translates to: CMRLYMAVHVPVWDV*THVMCEPVRGQLWV
Trigger: CACCCAAAGTTGACCTCTTACAGGCTCACACATTACATGTGTGCACACATCCCACACAGGAACATGTACAGCCATGTACAAACGCATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp ACACATGTAATGTGTGAGCCTGTAAGAGGTCAACTTTGGGTGTTGTaGCCTCAGGAGTTGCCACCGTATGTTTTGAGACAATGTCACTTT +
Preference number: 1 (lower is better)
Translates to: THVMCEPVRGQLWVL*PQELPPYVLRQCHF
Trigger: AAAGTGACATTGTCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCCAAAGTTGACCTCTTACAGGCTCACACATTACATGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp TTGCTCTTTTGTATGCGTTTGTACATGGCTGTACATGTTCCTGTGTaGGATGTGTGCACACATGTAATGTGTGAGCCTGTAAGAGGTCAA +
Preference number: 1 (lower is better)
Translates to: LLFCMRLYMAVHVPV*DVCTHVMCEPVRGQ
Trigger: TTGACCTCTTACAGGCTCACACATTACATGTGTGCACACATCCCACACAGGAACATGTACAGCCATGTACAAACGCATACAAAAGAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 90 bp CATTCCTACCAACGGGACCAGATATTTGAGATATACTCGAAGAGCTaGTTTGCTCTTTTGTATGCGTTTGTACATGGCTGTACATGTTCC +
Preference number: 1 (lower is better)
Translates to: HSYQRDQIFEIYSKS*FALLYAFVHGCTCS
Trigger: GGAACATGTACAGCCATGTACAAACGCATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTGGTAGGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp GGAATAAATCCACAGCAGGGAACTTCAATAAAATATAAAGAACATTaGGTGAGACATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAG +
Preference number: 1 (lower is better)
Translates to: GINPQQGTSIKYKEH*VRHRGSHSLQCEGK
Trigger: CTTACCCTCACATTGCAGACTGTGACTCCCCCGATGTCTCACCCAATGTTCTTTATATTTTATTGAAGTTCCCTGCTGTGGATTTATTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 90 bp TGTCGTAGTTATGAAAGCTTTTTAATGATTATTACTTTGCGTGGCTaGGAGAAGAGTAGACTGGATCCTGACCTTTCTGCACACTTCCAG +
Preference number: 1 (lower is better)
Translates to: CRSYESFLMIITLRG*EKSRLDPDLSAHFQ
Trigger: CTGGAAGTGTGCAGAAAGGTCAGGATCCAGTCTACTCTTCTCCCAGCCACGCAAAGTAATAATCATTAAAAAGCTTTCATAACTACGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCATGGCATCTCGCTCCCTaGAAGCTGTGTGGCCACACC +
Preference number: 2 (lower is better)
Translates to: ARESQGSACLCLPGNGIPWHLAP*KLCGHT
Trigger: GGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCA...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATTCGCAGGGATCTGCCTaGCTCTGCCTCCCCGGCAAT +
Preference number: 2 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHSQGSA*LCLPGN
Trigger: ATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGA...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAATGGCGCTGGGAACATaGAGGGGCAGAAGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: ARESQGSACLCLPGNGIPMALGT*RGRRKW
Trigger: CCACTTCCTTCTGCCCCTCCATGTTCCCAGCGCCAT...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTGGCCACACCAGGACCTaGGGACACTCTGCTCCCTCT +
Preference number: 2 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPAGHTRT*GHSAPS
Trigger: AGAGGGAGCAGAGTGTCCCCAGGTCCTGGTGTGGCC...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCTGGCATCTCGCTCCCTaGAAGCTGTGTGGCCACACC +
Preference number: 2 (lower is better)
Translates to: IPRLAWLARESQGSACLCWHLAP*KLCGHT
Trigger: GGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCA...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGGAGTCGCAGGGATCTaGCTGCCTCTGCCTCCCCGG +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPGVAGI*LPLPPR
Trigger: CCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCAGGGGCAGAAGGAAGTaGAGACTGGGCACTAGGGAT +
Preference number: 2 (lower is better)
Translates to: IPRLAWLARESQGSACLCRGRRK*RLGTRD
Trigger: ATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCCCCT...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAACTCCGAGTAGAGTTTaGAGAGGGAGACTACTGAGG +
Preference number: 2 (lower is better)
Translates to: ARESQGSACLCLPGNGIPTPSRV*RGRLLR
Trigger: CCTCAGTAGTCTCCCTCTCCAAACTCTACTCGGAGT...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTAGGTTGGCTGGGCACTaGCCTTCCCAGGATCAGCTG +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPRLAGH*PSQDQL
Trigger: CAGCTGATCCTGGGAAGGTCAGTGCCCAGCCAACCT...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTTGGCATCTCGCTCCCTaGAAGCTGTGTGGCCACACC +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPWHLAP*KLCGHT
Trigger: GGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCA...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp TTTGAGACAATGTCACTTTCTGGAACCTGGGATTCCCCGATTAGCTaGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCC +
Preference number: 2 (lower is better)
Translates to: FETMSLSGTWDSPIS*AGQGVAGICLPLPP
Trigger: GGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAATCCCAGGTTCCAGAAAGTGACATTGTCTCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCACTGCTCCCTCTGAGCTaGATGGTTTATAAGGCATTA +
Preference number: 2 (lower is better)
Translates to: ARESQGSACLCLPGNGIPLLPLS*MVYKAL
Trigger: TAATGCCTTATAAACCATGCAGCTCAGAGGGAGCAG...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGGCCACACCAGGACCTaGGGACACTCTGCTCCCTCT +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPGHTRT*GHSAPS
Trigger: AGAGGGAGCAGAGTGTCCCCAGGTCCTGGTGTGGCC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCATGTGGTCTGCAGGGGTaGGAGGATATAAAAATCTCA +
Preference number: 2 (lower is better)
Translates to: ARESQGSACLCLPGNGIPCGLQG*EDIKIS
Trigger: TGAGATTTTTATATCCTCCCACCCCTGCAGACCACA...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTATTCCCCGATTAGCTTaGCTGGCCAGGGAGTCGCAG +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPIPRLA*LARESQ
Trigger: CTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCTTCAAAGGCAGGGCTaGCTTCCAGATGGCCCTTGT +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPLQRQG*LPDGPC
Trigger: ACAAGGGCCATCTGGAAGGCAGCCCTGCCTTTGAAG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCAGCTATATACATTTGTaGTCTGCAGGGGTGGGAGGA +
Preference number: 2 (lower is better)
Translates to: IPRLAWLARESQGSACLCSYIHL*SAGVGG
Trigger: TCCTCCCACCCCTGCAGACCACAAATGTATATAGCT...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTATGCACCCCTATGCCTaGCTTTTACGTGGGTGCTGG +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPMHPYA*LLRGCW
Trigger: CCAGCACCCACGTAAAAGCCAGGCATAGGGGTGCAT...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCTGAAGGTACCCACTTaGACTTGGAGGGGTAGGCTC +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPLKVPT*TWRGRL
Trigger: GAGCCTACCCCTCCAAGTCCAAGTGGGTACCTTCAG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp GCAAAAGCATACTTCACTCCCTGGAGAATCAAAGAAGGGTGCAGATaGCTGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCT +
Preference number: 2 (lower is better)
Translates to: AKAYFTPWRIKEGCR*LPRPGVALCLFRAA
Trigger: AGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCAGCAATCTGCACCCTTCTTTGATTCTCCAGGGAGTGAAGTATGCTTTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTTGGCTTTTACGTGGGTaGTGGGGATATGAGCTCAGG +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPWLLRG*WGYELR
Trigger: CCTGAGCTCATATCCCCAGCACCCACGTAAAAGCCA...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCGACTTTTGGACTACTTaGAAACTAAGGATGCTCTGG +
Preference number: 2 (lower is better)
Translates to: IPRLAWLARESQGSACLCDFWTT*KLRMLW
Trigger: CCAGAGCATCCTTAGTTTTCAAGTAGTCCAAAAGTC...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGAAGGACCTTTGGGCTaGTGGCATTCCTACCAACGG +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPEGPLG*WHSYQR
Trigger: CCGTTGGTAGGAATGCCATCAGCCCAAAGGTCCTTC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAACCCACTCTAGCCTTTaGATTGGGATATATACATTA +
Preference number: 2 (lower is better)
Translates to: ARESQGSACLCLPGNGIPTHSSL*IGIYTL
Trigger: TAATGTATATATCCCAATGCAAAGGCTAGAGTGGGT...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATCTCGAAGAGCTGCTTTaGTCTTTTGTATGCGTTTGT +
Preference number: 2 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHLEELL*SFVCVC
Trigger: ACAAACGCATACAAAAGAGCAAAGCAGCTCTTCGAG...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACAAACTAAGGATGCTCTaGAAAAGGTTTCAGGAGGAC +
Preference number: 2 (lower is better)
Translates to: RHGISLPGSCVATPGPGDKLRML*KRFQED
Trigger: GTCCTCCTGAAACCTTTTCCAGAGCATCCTTAGTTT...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCAGGGGCAGAAGGAAGTaGAGACTGGGCACTAGGGAT +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPRGRRK*RLGTRD
Trigger: ATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCCCCT...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTACTCCGAGTAGAGTTTaGAGAGGGAGACTACTGAGG +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPTPSRV*RGRLLR
Trigger: CCTCAGTAGTCTCCCTCTCCAAACTCTACTCGGAGT...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCCTGTGTGGGATGTGTaGACACATGTAATGTGTGAG +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPPVWDV*THVMCE
Trigger: CTCACACATTACATGTGTGCACACATCCCACACAGG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCAAGGATTACAGACATaGACCCCTATGCCTGGCTTT +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPQGLQT*TPMPGF
Trigger: AAAGCCAGGCATAGGGGTGCATGTCTGTAATCCTTG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCTGTATGTCAAATGTGTaGAGCTTGAGTACAGTAGAG +
Preference number: 2 (lower is better)
Translates to: IPRLAWLARESQGSACLCCMSNV*SLSTVE
Trigger: CTCTACTGTACTCAAGCTCCACACATTTGACATACA...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTAGCTATATACATTTGTaGTCTGCAGGGGTGGGAGGA +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPSYIHL*SAGVGG
Trigger: TCCTCCCACCCCTGCAGACCACAAATGTATATAGCT...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCAGTGGGAAGGACCTTTaGGCTGATGGCATTCCTACC +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPSGKDL*ADGIPT
Trigger: GGTAGGAATGCCATCAGCCCAAAGGTCCTTCCCACT...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTGACATTTGCTCCATATaGCAGTTAGGTGTCTGCAGA +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPDICSI*QLGVCR
Trigger: TCTGCAGACACCTAACTGTCATATGGAGCAAATGTC...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGGAGTCGCAGGGATCTaGCTGCCTCTGCCTCCCCGG +
Preference number: 2 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYGVAGI*LPLPPR
Trigger: CCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTTGTATGTCAAATGTGTaGAGCTTGAGTACAGTAGAG +
Preference number: 2 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPACMSNV*SLSTVE
Trigger: CTCTACTGTACTCAAGCTCCACACATTTGACATACA...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGAAACTAAGGATGCTCTaGAAAAGGTTTCAGGAGGAC +
Preference number: 2 (lower is better)
Translates to: KRERDMASRSLEAVWPHQKLRML*KRFQED
Trigger: GTCCTCCTGAAACCTTTTCCAGAGCATCCTTAGTTT...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTTGTGGTCTGCAGGGGTaGGAGGATATAAAAATCTCA +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPCGLQG*EDIKIS
Trigger: TGAGATTTTTATATCCTCCCACCCCTGCAGACCACA...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGTAAGAGGTCAACTTTaGGTGTTGTGGCCTCAGGAG +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPVRGQL*VLWPQE
Trigger: CTCCTGAGGCCACAACACCCAAAGTTGACCTCTTAC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp GTTGAATGGAACCTTCACCTCTGTTCATGTGGCTGTTACAGTGGCTaGAGTCCTTACCCCAGAGATGTTGGAAACTTGGCCCTGGCTCAG +
Preference number: 2 (lower is better)
Translates to: VEWNLHLCSCGCYSG*SPYPRDVGNLALAQ
Trigger: CTGAGCCAGGGCCAAGTTTCCAACATCTCTGGGGTAAGGACTCAAGCCACTGTAACAGCCACATGAACAGAGGTGAAGGTTCCATTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTACCCACTCTAGCCTTTaGATTGGGATATATACATTA +
Preference number: 2 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPATHSSL*IGIYTL
Trigger: TAATGTATATATCCCAATGCAAAGGCTAGAGTGGGT...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCTCGAAGAGCTGCTTTaGTCTTTTGTATGCGTTTGT +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPLEELL*SFVCVC
Trigger: ACAAACGCATACAAAAGAGCAAAGCAGCTCTTCGAG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGTGTATGTCAAATGTGTaGAGCTTGAGTACAGTAGAG +
Preference number: 2 (lower is better)
Translates to: KRERDMASRSLEAVWPHQCMSNV*SLSTVE
Trigger: CTCTACTGTACTCAAGCTCCACACATTTGACATACA...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp GGTCAACTTTGGGTGTTGTGGCCTCAGGAGTTGCCACCGTATGTTTaGAGACAATGTCACTTTCTGGAACCTGGGATTCCCCGATTAGCT +
Preference number: 2 (lower is better)
Translates to: GQLWVLWPQELPPYV*RQCHFLEPGIPRLA
Trigger: AGCTAATCGGGGAATCCCAGGTTCCAGAAAGTGACATTGTCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCCAAAGTTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp TGTGAGCCTGTAAGAGGTCAACTTTGGGTGTTGTGGCCTCAGGAGTaGCCACCGTATGTTTTGAGACAATGTCACTTTCTGGAACCTGGG +
Preference number: 2 (lower is better)
Translates to: CEPVRGQLWVLWPQE*PPYVLRQCHFLEPG
Trigger: CCCAGGTTCCAGAAAGTGACATTGTCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCCAAAGTTGACCTCTTACAGGCTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCACGGGACCAGATATTTaGGATATACTCGAAGAGCTG +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPTGPDI*DILEEL
Trigger: CAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGT...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTGCTATTTTTGGTTTCTaGATGTTCCTTCCTTCTGAC +
Preference number: 2 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPAIFGF*MFLPSD
Trigger: GTCAGAAGGAAGGAACATGCAGAAACCAAAAATAGC...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGGATCTGCCTGCCTCTaGCTCCCCGGCAATGGGATA +
Preference number: 2 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYGSACL*LPGNGI
Trigger: TATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCTCGAAGAGCTGCTTTaGTCTTTTGTATGCGTTTGT +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPLEELL*SFVCVC
Trigger: ACAAACGCATACAAAAGAGCAAAGCAGCTCTTCGAG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATAGGCCACACCAGGACCTaGGGACACTCTGCTCCCTCT +
Preference number: 2 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIGHTRT*GHSAPS
Trigger: AGAGGGAGCAGAGTGTCCCCAGGTCCTGGTGTGGCC...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp TGCACACATGTAATGTGTGAGCCTGTAAGAGGTCAACTTTGGGTGTaGTGGCCTCAGGAGTTGCCACCGTATGTTTTGAGACAATGTCAC +
Preference number: 2 (lower is better)
Translates to: CTHVMCEPVRGQLWV*WPQELPPYVLRQCH
Trigger: GTGACATTGTCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCCAAAGTTGACCTCTTACAGGCTCACACATTACATGTGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATATGGCATCTCGCTCCCTaGAAGCTGTGTGGCCACACC +
Preference number: 2 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIWHLAP*KLCGHT
Trigger: GGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCA...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATATTCCCCGATTAGCTTaGCTGGCCAGGGAGTCGCAG +
Preference number: 2 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYIPRLA*LARESQ
Trigger: CTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCTGTTGTGGAGAGTTATaGCTTTTGGACTACTTGAAA +
Preference number: 2 (lower is better)
Translates to: STAILSTVRAQTASYLFPCCGEL*LLDYLK
Trigger: TTTCAAGTAGTCCAAAAGTCATAACTCTCCACAACA...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp GAGCTGCTAGGCCAGATCCCTGAGACCGTTCCTCGCTTGCTATTTTaGGTTTCTGCATGTTCCTTCCTTCTGACCTTAAATAACTTTGTA +
Preference number: 2 (lower is better)
Translates to: ELLGQIPETVPRLLF*VSACSFLLTLNNFV
Trigger: TACAAAGTTATTTAAGGTCAGAAGGAAGGAACATGCAGAAACCAAAAATAGCAAGCGAGGAACGGTCTCAGGGATCTGGCCTAGCAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR GCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTACCCACTCTAGCCTTTaGATTGGGATATATACATTA +
Preference number: 2 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSITHSSL*IGIYTL
Trigger: TAATGTATATATCCCAATGCAAAGGCTAGAGTGGGT...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATACTCCGAGTAGAGTTTaGAGAGGGAGACTACTGAGG +
Preference number: 2 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYTPSRV*RGRLLR
Trigger: CCTCAGTAGTCTCCCTCTCCAAACTCTACTCGGAGT...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGTAAGAGGTCAACTTTaGGTGTTGTGGCCTCAGGAG +
Preference number: 2 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYVRGQL*VLWPQE
Trigger: CTCCTGAGGCCACAACACCCAAAGTTGACCTCTTAC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 90 bp GATGGCCCTTGTCGTAGTTATGAAAGCTTTTTAATGATTATTACTTaGCGTGGCTGGGAGAAGAGTAGACTGGATCCTGACCTTTCTGCA +
Preference number: 2 (lower is better)
Translates to: DGPCRSYESFLMIIT*RGWEKSRLDPDLSA
Trigger: TGCAGAAAGGTCAGGATCCAGTCTACTCTTCTCCCAGCCACGCAAAGTAATAATCATTAAAAAGCTTTCATAACTACGACAAGGGCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGACAATGTCACTTTCTaGAACCTGGGATTCCCCGAT +
Preference number: 2 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYDNVTF*NLGFPD
Trigger: ATCGGGGAATCCCAGGTTCCAGAAAGTGACATTGTC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGACTTTTGGACTACTTaGAAACTAAGGATGCTCTGG +
Preference number: 2 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYDFWTT*KLRMLW
Trigger: CCAGAGCATCCTTAGTTTTCAAGTAGTCCAAAAGTC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR TCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATATGTTGTGGAGAGTTATaGCTTTTGGACTACTTGAAA +
Preference number: 2 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLICCGEL*LLDYLK
Trigger: TTTCAAGTAGTCCAAAAGTCATAACTCTCCACAACA...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp TGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTaGCTCCCCGGCAATGGGATACCAAATGTGTACGGC +
Preference number: 3 (lower is better)
Translates to: WLARESQGSACL*LPGNGIPNVYG
Trigger: GCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp CCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTaGCTGCCTCTGCCTCCCCGGCAATGGGATACCAAA +
Preference number: 3 (lower is better)
Translates to: PISLAGQGVAGI*LPLPPRQWDTK
Trigger: TTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp TTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTaGCTCTGCCTCCCCGGCAATGGGATACCAAATGTG +
Preference number: 3 (lower is better)
Translates to: LAWLARESQGSA*LCLPGNGIPNV
Trigger: CACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATGGTCAACTTTGGGTGTaGTGGCCTCAGGAGTTGCCA +
Preference number: 3 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHGQLWV*WPQELP
Trigger: TGGCAACTCCTGAGGCCACAACACCCAAAGTTGACC...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp GACTTTACCCTGGCTACCAGCATGGCGCTGGGAACATaGAGGGGCAGAAGGAAGTGGAGACTGGGCACTAGG +
Preference number: 3 (lower is better)
Translates to: DFTLATSMALGT*RGRRKWRLGTR
Trigger: CCTAGTGCCCAGTCTCCACTTCCTTCTGCCCCTCCATGTTCCCAGCGCCATGCTGGTAGCCAGGGTAAAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp GTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATaGGATACCAAATGTGTACGGCACCCAGCTTTTCCT +
Preference number: 3 (lower is better)
Translates to: VAGICLPLPPRQ*DTKCVRHPAFP
Trigger: AGGAAAAGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp TGTCACTTTCTGGAACCTGGGATTCCCCGATTAGCTTaGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTC +
Preference number: 3 (lower is better)
Translates to: CHFLEPGIPRLA*LARESQGSACL
Trigger: GAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAATCCCAGGTTCCAGAAAGTGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp TCAAAGAAGGGTGCAGATTGCTGCCCCGGCCTGGAGTaGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTG +
Preference number: 3 (lower is better)
Translates to: SKKGADCCPGLE*PSVYSGQLTWL
Trigger: CAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCAGCAATCTGCACCCTTCTTTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp GACATGCACCCCTATGCCTGGCTTTTACGTGGGTGCTaGGGATATGAGCTCAGGCCCTCATGCTTGGGCAGC +
Preference number: 3 (lower is better)
Translates to: DMHPYAWLLRGC*GYELRPSCLGS
Trigger: GCTGCCCAAGCATGAGGGCCTGAGCTCATATCCCCAGCACCCACGTAAAAGCCAGGCATAGGGGTGCATGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATCACCAGGCAAGAGAGTaGTCTGTGTTCTTCAGCTCA +
Preference number: 3 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHHQARE*SVFFSS
Trigger: TGAGCTGAAGAACACAGACAACTCTCTTGCCTGGTG...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp TCACTCCCTGGAGAATCAAAGAAGGGTGCAGATTGCTaGCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGG +
Preference number: 3 (lower is better)
Translates to: SLPGESKKGADC*PGLEWPSVYSG
Trigger: CCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCAGCAATCTGCACCCTTCTTTGATTCTCCAGGGAGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp TTACGTGGGTGCTGGGGATATGAGCTCAGGCCCTCATaGTTGGGCAGCAGGACGTCTCCTGACAGAGACATC +
Preference number: 3 (lower is better)
Translates to: LRGCWGYELRPS*LGSRTSPDRDI
Trigger: GATGTCTCTGTCAGGAGACGTCCTGCTGCCCAAGCATGAGGGCCTGAGCTCATATCCCCAGCACCCACGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTGGTCAACTTTGGGTGTaGTGGCCTCAGGAGTTGCCA +
Preference number: 3 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPGQLWV*WPQELP
Trigger: TGGCAACTCCTGAGGCCACAACACCCAAAGTTGACC...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 72 bp TGTCTATTCAGGGCAGCTGACTTGGCTGCATTCATCTaGGGAGCACCCCAGACACACACCACCAGGCAAGAG +
Preference number: 3 (lower is better)
Translates to: CLFRAADLAAFI*GAPQTHTTRQE
Trigger: CTCTTGCCTGGTGGTGTGTGTCTGGGGTGCTCCTCAGATGAATGCAGCCAAGTCAGCTGCCCTGAATAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 72 bp CTCACTAACCCTGCAGCTTGCAGATCGCTCATTTTGTaGGGTTGGCTGGGCACTGACCTTCCCAGGATCAGC +
Preference number: 3 (lower is better)
Translates to: LTNPAACRSLIL*GWLGTDLPRIS
Trigger: GCTGATCCTGGGAAGGTCAGTGCCCAGCCAACCTCACAAAATGAGCGATCTGCAAGCTGCAGGGTTAGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp ACTTCACTCCCTGGAGAATCAAAGAAGGGTGCAGATTaGTGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCA +
Preference number: 3 (lower is better)
Translates to: TSLPGESKKGAD*CPGLEWPSVYS
Trigger: TGAATAGACAGAGGGCCACTCCAGGCCGGGGCAGCAATCTGCACCCTTCTTTGATTCTCCAGGGAGTGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp AAAGCATACTTCACTCCCTGGAGAATCAAAGAAGGGTaGAGATTGCTGCCCCGGCCTGGAGTGGCCCTCTGT +
Preference number: 3 (lower is better)
Translates to: KAYFTPWRIKEG*RLLPRPGVALC
Trigger: ACAGAGGGCCACTCCAGGCCGGGGCAGCAATCTGCACCCTTCTTTGATTCTCCAGGGAGTGAAGTATGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp ATAAAGCTGACTTTACCCTGGCTACCAGCATGGCGCTaGGAACATGGAGGGGCAGAAGGAAGTGGAGACTGG +
Preference number: 3 (lower is better)
Translates to: IKLTLPWLPAWR*EHGGAEGSGDW
Trigger: CCAGTCTCCACTTCCTTCTGCCCCTCCATGTTCCCAGCGCCATGCTGGTAGCCAGGGTAAAGTCAGCTTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCAGTGCCCTTCTCCTTaGTCTACAGCTATTCTGAGC +
Preference number: 3 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPQCPSP*STAILS
Trigger: GCTCAGAATAGCTGTAGACAAAGGAGAAGGGCACTG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp ATGGGATACCAAATGTGTACGGCACCCAGCTTTTCCTaGTTAGGCTTGTCGGGCAGGCATGTTACCAGTGGG +
Preference number: 3 (lower is better)
Translates to: MGYQMCTAPSFS*LGLSGRHVTSG
Trigger: CCCACTGGTAACATGCCTGCCCGACAAGCCTAAGCAGGAAAAGCTGGGTGCCGTACACATTTGGTATCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGCCAATAAGAAGCTGTaGTGGAGAGTTATGACTTTT +
Preference number: 3 (lower is better)
Translates to: RHGISLPGSCVATPGPGDANKKL*WRVMTF
Trigger: AAAAGTCATAACTCTCCACAACAGCTTCTTATTGGC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 72 bp GGGTGTTGTGGCCTCAGGAGTTGCCACCGTATGTTTTaGGACAATGTCACTTTCTGGAACCTGGGATTCCCC +
Preference number: 3 (lower is better)
Translates to: GCCGLRSCHRMF*DNVTFWNLGFP
Trigger: GGGGAATCCCAGGTTCCAGAAAGTGACATTGTCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp CAACTTTACCCACTCCTCTACCAAGGATTACAGACATaGACCCCTATGCCTGGCTTTTACGTGGGTGCTGGG +
Preference number: 3 (lower is better)
Translates to: QLYPLLYQGLQT*TPMPGFYVGAG
Trigger: CCCAGCACCCACGTAAAAGCCAGGCATAGGGGTGCATGTCTGTAATCCTTGGTAGAGGAGTGGGTAAAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp AATCTCATAAAGCTGACTTTACCCTGGCTACCAGCATaGCGCTGGGAACATGGAGGGGCAGAAGGAAGTGGA +
Preference number: 3 (lower is better)
Translates to: NLIKLTLPWLPA*RWEHGGAEGSG
Trigger: TCCACTTCCTTCTGCCCCTCCATGTTCCCAGCGCCATGCTGGTAGCCAGGGTAAAGTCAGCTTTATGAGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCACCAGGCAAGAGAGTaGTCTGTGTTCTTCAGCTCA +
Preference number: 3 (lower is better)
Translates to: STAILSTVRAQTASYLFPHQARE*SVFFSS
Trigger: TGAGCTGAAGAACACAGACAACTCTCTTGCCTGGTG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCCTCGCTTGCTATTTTaGGTTTCTGCATGTTCCTTC +
Preference number: 3 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPPRLLF*VSACSF
Trigger: GAAGGAACATGCAGAAACCAAAAATAGCAAGCGAGG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGCCAATAAGAAGCTGTaGTGGAGAGTTATGACTTTT +
Preference number: 3 (lower is better)
Translates to: KRERDMASRSLEAVWPHQANKKL*WRVMTF
Trigger: AAAAGTCATAACTCTCCACAACAGCTTCTTATTGGC...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTTTGCCACCGTATGTTTaGAGACAATGTCACTTTCTG +
Preference number: 3 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPLPPYV*RQCHFL
Trigger: CAGAAAGTGACATTGTCTCAAAACATACGGTGGCAA...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp CAAGCATGTGCTATAGACACAGTGGACACCACAGGGTaGGATAGGGCACCACCTGTACTAGACAGACAAATG +
Preference number: 3 (lower is better)
Translates to: QACAIDTVDTTG*DRAPPVLDRQM
Trigger: CATTTGTCTGTCTAGTACAGGTGGTGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp ACCGTATGTTTTGAGACAATGTCACTTTCTGGAACCTaGGATTCCCCGATTAGCTTGGCTGGCCAGGGAGTC +
Preference number: 3 (lower is better)
Translates to: TVCFETMSLSGT*DSPISLAGQGV
Trigger: GACTCCCTGGCCAGCCAAGCTAATCGGGGAATCCCAGGTTCCAGAAAGTGACATTGTCTCAAAACATACGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp GTTGTCTGTGTTCTTCAGCTCAGTGGGAAGGACCTTTaGGCTGATGGCATTCCTACCAACGGGACCAGATAT +
Preference number: 3 (lower is better)
Translates to: VVCVLQLSGKDL*ADGIPTNGTRY
Trigger: ATATCTGGTCCCGTTGGTAGGAATGCCATCAGCCCAAAGGTCCTTCCCACTGAGCTGAAGAACACAGACAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp CTGTTACAGTGGCTTGAGTCCTTACCCCAGAGATGTTaGAAACTTGGCCCTGGCTCAGTTTCACCTATCTGG +
Preference number: 3 (lower is better)
Translates to: LLQWLESLPQRC*KLGPGSVSPIW
Trigger: CCAGATAGGTGAAACTGAGCCAGGGCCAAGTTTCCAACATCTCTGGGGTAAGGACTCAAGCCACTGTAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp TGCCAGCAGTGTAGAACATGGTGTCCTTCAGTGTACTaGGCAAACAGACTACTTCAAAGGCAGGGCTGCCTT +
Preference number: 3 (lower is better)
Translates to: CQQCRTWCPSVY*ANRLLQRQGCL
Trigger: AAGGCAGCCCTGCCTTTGAAGTAGTCTGTTTGCCCAGTACACTGAAGGACACCATGTTCTACACTGCTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp GGAGGATATAAAAATCTCATAAAGCTGACTTTACCCTaGCTACCAGCATGGCGCTGGGAACATGGAGGGGCA +
Preference number: 3 (lower is better)
Translates to: GGYKNLIKLTLP*LPAWRWEHGGA
Trigger: TGCCCCTCCATGTTCCCAGCGCCATGCTGGTAGCCAGGGTAAAGTCAGCTTTATGAGATTTTTATATCCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp ACACATGTAATGTGTGAGCCTGTAAGAGGTCAACTTTaGGTGTTGTGGCCTCAGGAGTTGCCACCGTATGTT +
Preference number: 3 (lower is better)
Translates to: THVMCEPVRGQL*VLWPQELPPYV
Trigger: AACATACGGTGGCAACTCCTGAGGCCACAACACCCAAAGTTGACCTCTTACAGGCTCACACATTACATGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp GAAGAGCTGCTTTGCTCTTTTGTATGCGTTTGTACATaGCTGTACATGTTCCTGTGTGGGATGTGTGCACAC +
Preference number: 3 (lower is better)
Translates to: EELLCSFVCVCT*LYMFLCGMCAH
Trigger: GTGTGCACACATCCCACACAGGAACATGTACAGCCATGTACAAACGCATACAAAAGAGCAAAGCAGCTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp ATGGAACCTTCACCTCTGTTCATGTGGCTGTTACAGTaGCTTGAGTCCTTACCCCAGAGATGTTGGAAACTT +
Preference number: 3 (lower is better)
Translates to: MEPSPLFMWLLQ*LESLPQRCWKL
Trigger: AAGTTTCCAACATCTCTGGGGTAAGGACTCAAGCCACTGTAACAGCCACATGAACAGAGGTGAAGGTTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTGCCAATAAGAAGCTGTaGTGGAGAGTTATGACTTTT +
Preference number: 3 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIANKKL*WRVMTF
Trigger: AAAAGTCATAACTCTCCACAACAGCTTCTTATTGGC...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 72 bp GGGCTGATGGCATTCCTACCAACGGGACCAGATATTTaGGATATACTCGAAGAGCTGCTTTGCTCTTTTGTA +
Preference number: 3 (lower is better)
Translates to: GLMAFLPTGPDI*DILEELLCSFV
Trigger: TACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTGGTAGGAATGCCATCAGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR GCA 72 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTaGTTTGCTCTTTTGTATGCGTTTGTACATGGCTGT +
Preference number: 3 (lower is better)
Translates to: QRDQIFEIYSKS*FALLYAFVHGC
Trigger: ACAGCCATGTACAAACGCATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR TCA 72 bp GAAGCTGTTGTGGAGAGTTATGACTTTTGGACTACTTaGAAACTAAGGATGCTCTGGAAAAGGTTTCAGGAG +
Preference number: 3 (lower is better)
Translates to: EAVVESYDFWTT*KLRMLWKRFQE
Trigger: CTCCTGAAACCTTTTCCAGAGCATCCTTAGTTTTCAAGTAGTCCAAAAGTCATAACTCTCCACAACAGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR-3UTR CAA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATAGCCAATAAGAAGCTGTaGTGGAGAGTTATGACTTTT +
Preference number: 3 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIANKKL*WRVMTF
Trigger: AAAAGTCATAACTCTCCACAACAGCTTCTTATTGGC...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CCA 72 bp AATAAACTTATCACAATCATGAGCTATATACATTTGTaGTCTGCAGGGGTGGGAGGATATAAAAATCTCATA +
Preference number: 3 (lower is better)
Translates to: NKLITIMSYIHL*SAGVGGYKNLI
Trigger: TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCATGATTGTGATAAGTTTATT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAGCTGACCGGAGGCCCTaGTGGGGGTGGAGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPADRRP*WGWRGW
Trigger: CCACCCCCTCCACCCCCACCAGGGCCTCCGGTCAGC...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCACGGAGGTGGGGGTGGTaGCGGTGGCGGAGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPRRWGW*RWRSWR
Trigger: CCTCCAGCTCCGCCACCGCCACCACCCCCACCTCCG...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCGCTGACCGGAGGCCCTaGTGGGGGTGGAGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCADRRP*WGWRGW
Trigger: CCACCCCCTCCACCCCCACCAGGGCCTCCGGTCAGC...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGGAGCGGGGGTGGGATaGGTGGCAGGTGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDGAGVG*VAGAVG
Trigger: CCCCACTGCACCTGCCACCCATCCCACCCCCGCTCC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR TCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACAGGGCTGTTGGGCTCTaGGTGGAGCCCGGGGTACCC +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDRAVGL*VEPGVP
Trigger: GGGTACCCCGGGCTCCACTCAGAGCCCAACAGCCCT...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR TCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATAGGGCTGTTGGGCTCTaGGTGGAGCCCGGGGTACCC +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHRAVGL*VEPGVP
Trigger: GGGTACCCCGGGCTCCACTCAGAGCCCAACAGCCCT...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR TCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCAGGGCTGTTGGGCTCTaGGTGGAGCCCGGGGTACCC +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCRAVGL*VEPGVP
Trigger: GGGTACCCCGGGCTCCACTCAGAGCCCAACAGCCCT...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTCGGGAGCCAGGGCCCTaGCCGGACTTGCCACCTGAC +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPAREPGP*PDLPPD
Trigger: GTCAGGTGGCAAGTCCGGGCAGGGCCCTGGCTCCCG...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCATGTGGTGGGCGATCTTaGAGGTGGGGCTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPCGGRS*RWGWRW
Trigger: CCACCTCCAGCCCCACCTGCAAGATCGCCCACCACA...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACTGGAGTGGGAGGTGGTaGGGCAGGCACACTGGGGCG +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDWSGRW*GRHTGA
Trigger: CGCCCCAGTGTGCCTGCCCCACCACCTCCCACTCCA...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCTGGAGTGGGAGGTGGTaGGGCAGGCACACTGGGGCG +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCWSGRW*GRHTGA
Trigger: CGCCCCAGTGTGCCTGCCCCACCACCTCCCACTCCA...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTGGAGCGGGGGTGGGATaGGTGGCAGGTGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPAGAGVG*VAGAVG
Trigger: CCCCACTGCACCTGCCACCCATCCCACCCCCGCTCC...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATGGGGTACCCACAGGGTaGAAGGAGAGGGAGCGGGGG +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHGVPTG*KERERG
Trigger: CCCCCGCTCCCTCTCCTTCCACCCTGTGGGTACCCC...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCGGGGTACCCACAGGGTaGAAGGAGAGGGAGCGGGGG +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCGVPTG*KERERG
Trigger: CCCCCGCTCCCTCTCCTTCCACCCTGTGGGTACCCC...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCTGGGGGTGGTGGCGGTaGCGGAGCTGGAGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCWGWWR*RSWRFS
Trigger: CGAGAACCTCCAGCTCCGCCACCGCCACCACCCCCA...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCACCAGCCGCCTCAGCTTaGAGCCAGGAACCAGGTGTG +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPPAASA*SQEPGV
Trigger: CACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGG...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCACTCCCCTGGCATTGCTaGCAGCAGCTCCTCCCTCTT +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPLPWHC*QQLLPL
Trigger: AAGAGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAG...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCATTCCTCCCCTGGCATTaGTGCCAGCAGCTCCTCCCT +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPFLPWH*CQQLLP
Trigger: AGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAA...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGCGGGAGCCAGGGCCCTaGCCGGACTTGCCACCTGAC +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQREPGP*PDLPPD
Trigger: GTCAGGTGGCAAGTCCGGGCAGGGCCCTGGCTCCCG...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAGGCCTGGCAGAGCTGTaGGTCTCTGAGGCATTGCCT +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPGLAEL*VSEALP
Trigger: AGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCC...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATGGGATGGGTGGCAGGTaGAGTGGGGCTAGTTGGGGC +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHGMGGR*SGASWG
Trigger: GCCCCAACTAGCCCCACTGCACCTGCCACCCATCCC...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCGGGATGGGTGGCAGGTaGAGTGGGGCTAGTTGGGGC +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCGMGGR*SGASWG
Trigger: GCCCCAACTAGCCCCACTGCACCTGCCACCCATCCC...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACCCTGTGCAGGGCTGTTaGGCTCTGAGTGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDPVQGC*ALSGAR
Trigger: CCGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGG...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCGGAGGTGGGGGTGGTaGCGGTGGCGGAGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPRRWGW*RWRSWR
Trigger: CCTCCAGCTCCGCCACCGCCACCACCCCCACCTCCG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAGAGCACCTGGAGGTGTaGGCAAGGCCTTCTGCGTCT +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPEHLEV*ARPSAS
Trigger: AGACGCAGAAGGCCTTGCCCACACCTCCAGGTGCTC...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCAGGGCCGGGAGCACCTaGAGGTGTGGGCAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCRAGST*RCGQGL
Trigger: AAGGCCTTGCCCACACCTCCAGGTGCTCCCGGCCCT...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATGTGGGCAAGGCCTTCTaGGTCTGGAAGCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHVGKAF*VWKLGD
Trigger: GTCCCCCAGCTTCCAGACGCAGAAGGCCTTGCCCAC...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCTGTGGTGGGCGATCTTaGAGGTGGGGCTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCCGGRS*RWGWRW
Trigger: CCACCTCCAGCCCCACCTGCAAGATCGCCCACCACA...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAATGTCATCAGAGCTCTaGCCAGCCGCCTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPMSSEL*PAASAW
Trigger: CCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACAT...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCAGCTGACCGGAGGCCCTaGTGGGGGTGGAGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAADRRP*WGWRGW
Trigger: CCACCCCCTCCACCCCCACCAGGGCCTCCGGTCAGC...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTCCTGTGCAGGGCTGTTaGGCTCTGAGTGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPAPVQGC*ALSGAR
Trigger: CCGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGG...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGTGGGGGTGGTGGCGGTaGCGGAGCTGGAGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQWGWWR*RSWRFS
Trigger: CGAGAACCTCCAGCTCCGCCACCGCCACCACCCCCA...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCCTCCATTCCGCAGCTaGCCTCCAGGCTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCPPFRS*PPGCWL
Trigger: AAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGG...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCCAGCCGCCTCAGCTTaGAGCCAGGAACCAGGTGTG +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCPAASA*SQEPGV
Trigger: CACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGG...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCTGGCATTGCTaGCAGCAGCTCCTCCCTCTT +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCLPWHC*QQLLPL
Trigger: AAGAGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAG...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACCTCCCCTGGCATTGCTaGCAGCAGCTCCTCCCTCTT +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDLPWHC*QQLLPL
Trigger: AAGAGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAG...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCACGGGAGCCAGGGCCCTaGCCGGACTTGCCACCTGAC +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAREPGP*PDLPPD
Trigger: GTCAGGTGGCAAGTCCGGGCAGGGCCCTGGCTCCCG...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGGCCTGGCAGAGCTGTaGGTCTCTGAGGCATTGCCT +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDGLAEL*VSEALP
Trigger: AGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGCTGACCGGAGGCCCTaGTGGGGGTGGAGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPADRRP*WGWRGW
Trigger: CCACCCCCTCCACCCCCACCAGGGCCTCCGGTCAGC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTTGGGGGTGGTGGCGGTaGCGGAGCTGGAGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPWGWWR*RSWRFS
Trigger: CGAGAACCTCCAGCTCCGCCACCGCCACCACCCCCA...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCGGAGGTGGGGGTGGTaGCGGTGGCGGAGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPRRWGW*RWRSWR
Trigger: CCTCCAGCTCCGCCACCGCCACCACCCCCACCTCCG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGAGCACCTGGAGGTGTaGGCAAGGCCTTCTGCGTCT +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDEHLEV*ARPSAS
Trigger: AGACGCAGAAGGCCTTGCCCACACCTCCAGGTGCTC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGAGGGCCGGGAGCACCTaGAGGTGTGGGCAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQRAGST*RCGQGL
Trigger: AAGGCCTTGCCCACACCTCCAGGTGCTCCCGGCCCT...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCGGGAGCCAGGGCCCTaGCCGGACTTGCCACCTGAC +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPREPGP*PDLPPD
Trigger: GTCAGGTGGCAAGTCCGGGCAGGGCCCTGGCTCCCG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGCGTCTCTGAGGCATTaGCTAGCCTGGGAGATGCAG +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDASLRH*LAWEMQ
Trigger: CTGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGTGGGCAAGGCCTTCTaGGTCTGGAAGCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQVGKAF*VWKLGD
Trigger: GTCCCCCAGCTTCCAGACGCAGAAGGCCTTGCCCAC...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACAGCTGGCCTCCAGGCTaGTGGCTTTTGCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDSWPPG*WLLLES
Trigger: GCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCT...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCATGTCATCAGAGCTCTaGCCAGCCGCCTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCMSSEL*PAASAW
Trigger: CCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACAT...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATATGTCATCAGAGCTCTaGCCAGCCGCCTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHMSSEL*PAASAW
Trigger: CCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACAT...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGTGTGTTTCCTCCCCTaGCATTGCTGCCAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDVCFLP*HCCQQL
Trigger: GAGCTGCTGGCAGCAATGCCAGGGGAGGAAACACAC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCAGGCATTGCCTAGCCTaGGAGATGCAGGAGCGGGAA +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCRHCLA*EMQERE
Trigger: TTCCCGCTCCTGCATCTCCCAGGCTAGGCAATGCCT...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACAGGCATTGCCTAGCCTaGGAGATGCAGGAGCGGGAA +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDRHCLA*EMQERE
Trigger: TTCCCGCTCCTGCATCTCCCAGGCTAGGCAATGCCT...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGGAGCGGGGGTGGGATaGGTGGCAGGTGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPGAGVG*VAGAVG
Trigger: CCCCACTGCACCTGCCACCCATCCCACCCCCGCTCC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATTGGAAAGCTCTGTGGTaGGCGATCTTGCAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHWKALW*AILQVG
Trigger: CCCCACCTGCAAGATCGCCCACCACAGAGCTTTCCA...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGCCTCCATTCCGCAGCTaGCCTCCAGGCTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQPPFRS*PPGCWL
Trigger: AAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGG...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGTTCCTCCCCTGGCATTaGTGCCAGCAGCTCCTCCCT +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQFLPWH*CQQLLP
Trigger: AGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAA...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGGCCTGGCAGAGCTGTaGGTCTCTGAGGCATTGCCT +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQGLAEL*VSEALP
Trigger: AGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCC...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATCAGGCTGCTGGCTTTTaGTGGAAAGCTCTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHQAAGF*WKALWW
Trigger: CCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTG...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGGGGTACCCACAGGGTaGAAGGAGAGGGAGCGGGGG +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPGVPTG*KERERG
Trigger: CCCCCGCTCCCTCTCCTTCCACCCTGTGGGTACCCC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTCGGAGGTGGGGGTGGTaGCGGTGGCGGAGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIRRWGW*RWRSWR
Trigger: CCTCCAGCTCCGCCACCGCCACCACCCCCACCTCCG...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATTGGCCTCCAGGCTGCTaGCTTTTGCTGGAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHWPPGC*LLLESS
Trigger: AGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCA...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCTGGCCTCCAGGCTGCTaGCTTTTGCTGGAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCWPPGC*LLLESS
Trigger: AGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCA...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTGGCCTGGCAGAGCTGTaGGTCTCTGAGGCATTGCCT +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPGLAEL*VSEALP
Trigger: AGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCC...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATGGCTTCTGGGGACCTTaGTGGGGTAAATCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHGFWGP*WGKSSD
Trigger: GTCAGAAGATTTACCCCAGCAAGGTCCCCAGAAGCC...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCCTGTGCAGGGCTGTTaGGCTCTGAGTGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPPVQGC*ALSGAR
Trigger: CCGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTTGCTGGAAAGCTCTGTaGTGGGCGATCTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPACWKAL*WAILQV
Trigger: CACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCA...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCACCTCCATTCCGCAGCTaGCCTCCAGGCTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAPPFRS*PPGCWL
Trigger: AAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGG...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCATTCTGGGGACCTTGCTaGGGTAAATCTTCTGACATG +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPFWGPC*GKSSDM
Trigger: CATGTCAGAAGATTTACCCCAGCAAGGTCCCCAGAA...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS-3UTR TCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTAGGGCTGTTGGGCTCTaGGTGGAGCCCGGGGTACCC +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIRAVGL*VEPGVP
Trigger: GGGTACCCCGGGCTCCACTCAGAGCCCAACAGCCCT...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGATATCAGCCAACAGTaGACTCCGGCCTTTCAGATC +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDDISQQ*TPAFQI
Trigger: GATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCGATATCAGCCAACAGTaGACTCCGGCCTTTCAGATC +
Preference number: 4 (lower is better)
Translates to: IPRLAWLARESQGSACLCDISQQ*TPAFQI
Trigger: GATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATC...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTCGCAGGCGTGTTCCTTaGTGGATATCAGCCAACAGT +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPARRRVP*WISANS
Trigger: ACTGTTGGCTGATATCCAGCAAGGAACACGCCTGCG...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACCTCCTCCCTCTTTGCTaGTTCCTTTTGAACCCTCGA +
Preference number: 4 (lower is better)
Translates to: RHGISLPGSCVATPGPGDLLPLC*FLLNPR
Trigger: TCGAGGGTTCAAAAGGAACCAGCAAAGAGGGAGGAG...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTGTGTGTTTCCTCCCCTaGCATTGCTGCCAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPVCFLP*HCCQQL
Trigger: GAGCTGCTGGCAGCAATGCCAGGGGAGGAAACACAC...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGTGCTGGAAAGCTCTGTaGTGGGCGATCTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQCWKAL*WAILQV
Trigger: CACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCA...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCAGGTGTGCGGCTTCTaGGGACCTTGCTGGGGTAAA +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPQVCGF*GPCWGK
Trigger: TTTACCCCAGCAAGGTCCCCAGAAGCCGCACACCTG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS-3UTR TCA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAGCCTTCAGAGATAACTaGGAGTTTCTGCTTTTGATG +
Preference number: 4 (lower is better)
Translates to: ARESQGSACLCLPGNGIPAFRDN*EFLLLM
Trigger: CATCAAAAGCAGAAACTCTCAGTTATCTCTGAAGGC...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTGATATCAGCCAACAGTaGACTCCGGCCTTTCAGATC +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPADISQQ*TPAFQI
Trigger: GATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATC...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCAGCGTCTCTGAGGCATTaGCTAGCCTGGGAGATGCAG +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAASLRH*LAWEMQ
Trigger: CTGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGC...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTCAGGCTGCTGGCTTTTaGTGGAAAGCTCTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPQAAGF*WKALWW
Trigger: CCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTG...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTCTCCTCCCTCTTTGCTaGTTCCTTTTGAACCCTCGA +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPALLPLC*FLLNPR
Trigger: TCGAGGGTTCAAAAGGAACCAGCAAAGAGGGAGGAG...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCAAGGCATTGCCTAGCCTaGGAGATGCAGGAGCGGGAA +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRARHCLA*EMQERE
Trigger: TTCCCGCTCCTGCATCTCCCAGGCTAGGCAATGCCT...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGAGCACCTGGAGGTGTaGGCAAGGCCTTCTGCGTCT +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPEHLEV*ARPSAS
Trigger: AGACGCAGAAGGCCTTGCCCACACCTCCAGGTGCTC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTTGCTGGAAAGCTCTGTaGTGGGCGATCTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPCWKAL*WAILQV
Trigger: CACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCA...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCACAGGTGTGCGGCTTCTaGGGACCTTGCTGGGGTAAA +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAQVCGF*GPCWGK
Trigger: TTTACCCCAGCAAGGTCCCCAGAAGCCGCACACCTG...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCACAGGCTGCTGGCTTTTaGTGGAAAGCTCTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAQAAGF*WKALWW
Trigger: CCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTG...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCAGCTGGCCTCCAGGCTaGTGGCTTTTGCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPSWPPG*WLLLES
Trigger: GCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCT...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGCTCCTCCCTCTTTGCTaGTTCCTTTTGAACCCTCGA +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQLLPLC*FLLNPR
Trigger: TCGAGGGTTCAAAAGGAACCAGCAAAGAGGGAGGAG...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTCCTCCATTCCGCAGCTaGCCTCCAGGCTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIPPFRS*PPGCWL
Trigger: AAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGG...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTTTCTGGGGACCTTGCTaGGGTAAATCTTCTGACATG +
Preference number: 4 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPAFWGPC*GKSSDM
Trigger: CATGTCAGAAGATTTACCCCAGCAAGGTCCCCAGAA...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATCGGGGGAGTCACAGTCTGCAATGTGAGGGTAAGCAAGGCTAGCAGGGGACCTAGGCGTGTTCCTTGCTaGATATCAGCCAACAGTGCA +
Preference number: 4 (lower is better)
Translates to: IGGVTVCNVRVSKASRGPRRVPC*ISANSA
Trigger: TGCACTGTTGGCTGATATCCAGCAAGGAACACGCCT...AGGTCCCCTGCTAGCCTTGCTTACCCTCACATTGCAGACTGTGACTCCCCCGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCTGGCCTCCAGGCTGCTaGCTTTTGCTGGAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: STAILSTVRAQTASYLFPWPPGC*LLLESS
Trigger: AGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCA...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTGCGTCTCTGAGGCATTaGCTAGCCTGGGAGATGCAG +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIASLRH*LAWEMQ
Trigger: CTGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGC...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTAGCTGGCCTCCAGGCTaGTGGCTTTTGCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSISWPPG*WLLLES
Trigger: GCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCT...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTGTGTGTTTCCTCCCCTaGCATTGCTGCCAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIVCFLP*HCCQQL
Trigger: GAGCTGCTGGCAGCAATGCCAGGGGAGGAAACACAC...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTAGGCATTGCCTAGCCTaGGAGATGCAGGAGCGGGAA +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIRHCLA*EMQERE
Trigger: TTCCCGCTCCTGCATCTCCCAGGCTAGGCAATGCCT...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTAGGAGCGGGGGTGGGATaGGTGGCAGGTGCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: DESHANKKLLWRVMTFGLGAGVG*VAGAVG
Trigger: CCCCACTGCACCTGCCACCCATCCCACCCCCGCTCC...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTCAGGCTGCTGGCTTTTaGTGGAAAGCTCTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIQAAGF*WKALWW
Trigger: CCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTG...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATTGGAGTGGGAGGTGGTaGGGCAGGCACACTGGGGCG +
Preference number: 4 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYWSGRW*GRHTGA
Trigger: CGCCCCAGTGTGCCTGCCCCACCACCTCCCACTCCA...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTATGGGGGTGGTGGCGGTaGCGGAGCTGGAGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: DESHANKKLLWRVMTFGLWGWWR*RSWRFS
Trigger: CGAGAACCTCCAGCTCCGCCACCGCCACCACCCCCA...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGTGGTTTGTATTCATCTaGAGGGGGAAAGTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: KRERDMASRSLEAVWPHQWFVFI*RGKVFH
Trigger: ATGGAAGACTTTCCCCCTCCAGATGAATACAAACCA...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATATGGAGTGGGAGGTGGTaGGGCAGGCACACTGGGGCG +
Preference number: 4 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIWSGRW*GRHTGA
Trigger: CGCCCCAGTGTGCCTGCCCCACCACCTCCCACTCCA...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTAAGGGCCGGGAGCACCTaGAGGTGTGGGCAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: DESHANKKLLWRVMTFGLRAGST*RCGQGL
Trigger: AAGGCCTTGCCCACACCTCCAGGTGCTCCCGGCCCT...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp TGGGTGTTGTGGCCTCAGGAGTTGCCACCGTATGTTTaGAGACAATGTCACTTTCTGGAACCTGGGATTCCC +
Preference number: 4 (lower is better)
Translates to: WVLWPQELPPYV*RQCHFLEPGIP
Trigger: GGGAATCCCAGGTTCCAGAAAGTGACATTGTCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp GCTCCAAAGCTCATCATAGCTCAGTGCCCTTCTCCTTaGTCTACAGCTATTCTGAGCACAGTGAGGGCTCAG +
Preference number: 4 (lower is better)
Translates to: APKLIIAQCPSP*STAILSTVRAQ
Trigger: CTGAGCCCTCACTGTGCTCAGAATAGCTGTAGACAAAGGAGAAGGGCACTGAGCTATGATGAGCTTTGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp AGTGGCTTGAGTCCTTACCCCAGAGATGTTGGAAACTaGGCCCTGGCTCAGTTTCACCTATCTGGAAGCATG +
Preference number: 4 (lower is better)
Translates to: SGLSPYPRDVGN*ALAQFHLSGSM
Trigger: CATGCTTCCAGATAGGTGAAACTGAGCCAGGGCCAAGTTTCCAACATCTCTGGGGTAAGGACTCAAGCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATAGGGATGGGTGGCAGGTaGAGTGGGGCTAGTTGGGGC +
Preference number: 4 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIGMGGR*SGASWG
Trigger: GCCCCAACTAGCCCCACTGCACCTGCCACCCATCCC...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGTGGGCAAGGCCTTCTaGGTCTGGAAGCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYVGKAF*VWKLGD
Trigger: GTCCCCCAGCTTCCAGACGCAGAAGGCCTTGCCCAC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTAGTGGGCAAGGCCTTCTaGGTCTGGAAGCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: DESHANKKLLWRVMTFGLVGKAF*VWKLGD
Trigger: GTCCCCCAGCTTCCAGACGCAGAAGGCCTTGCCCAC...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCATGGTTTGTATTCATCTaGAGGGGGAAAGTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAWFVFI*RGKVFH
Trigger: ATGGAAGACTTTCCCCCTCCAGATGAATACAAACCA...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTATTCCTCCCCTGGCATTaGTGCCAGCAGCTCCTCCCT +
Preference number: 4 (lower is better)
Translates to: DESHANKKLLWRVMTFGLFLPWH*CQQLLP
Trigger: AGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAA...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATACCAGCCGCCTCAGCTTaGAGCCAGGAACCAGGTGTG +
Preference number: 4 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIPAASA*SQEPGV
Trigger: CACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGG...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp GTAATGTGTGAGCCTGTAAGAGGTCAACTTTGGGTGTaGTGGCCTCAGGAGTTGCCACCGTATGTTTTGAGA +
Preference number: 4 (lower is better)
Translates to: VMCEPVRGQLWV*WPQELPPYVLR
Trigger: TCTCAAAACATACGGTGGCAACTCCTGAGGCCACAACACCCAAAGTTGACCTCTTACAGGCTCACACATTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTAGCGTCTCTGAGGCATTaGCTAGCCTGGGAGATGCAG +
Preference number: 4 (lower is better)
Translates to: DESHANKKLLWRVMTFGLASLRH*LAWEMQ
Trigger: CTGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGC...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATAGCTGGCCTCCAGGCTaGTGGCTTTTGCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYSWPPG*WLLLES
Trigger: GCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCT...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATATGTCATCAGAGCTCTaGCCAGCCGCCTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYMSSEL*PAASAW
Trigger: CCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACAT...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATATGGAAAGCTCTGTGGTaGGCGATCTTGCAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIWKALW*AILQVG
Trigger: CCCCACCTGCAAGATCGCCCACCACAGAGCTTTCCA...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATTGGCCTCCAGGCTGCTaGCTTTTGCTGGAAAGCTCT +
Preference number: 4 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYWPPGC*LLLESS
Trigger: AGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCA...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp GGCCAGATCCCTGAGACCGTTCCTCGCTTGCTATTTTaGGTTTCTGCATGTTCCTTCCTTCTGACCTTAAAT +
Preference number: 4 (lower is better)
Translates to: GQIPETVPRLLF*VSACSFLLTLN
Trigger: ATTTAAGGTCAGAAGGAAGGAACATGCAGAAACCAAAAATAGCAAGCGAGGAACGGTCTCAGGGATCTGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp TGGGCTGATGGCATTCCTACCAACGGGACCAGATATTaGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGT +
Preference number: 4 (lower is better)
Translates to: WADGIPTNGTRY*RYTRRAALLFC
Trigger: ACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTGGTAGGAATGCCATCAGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATCTCCTCCCTCTTTGCTaGTTCCTTTTGAACCCTCGA +
Preference number: 4 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYLLPLC*FLLNPR
Trigger: TCGAGGGTTCAAAAGGAACCAGCAAAGAGGGAGGAG...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp TATACTCGAAGAGCTGCTTTGCTCTTTTGTATGCGTTaGTACATGGCTGTACATGTTCCTGTGTGGGATGTG +
Preference number: 4 (lower is better)
Translates to: YTRRAALLFCMR*YMAVHVPVWDV
Trigger: CACATCCCACACAGGAACATGTACAGCCATGTACAAACGCATACAAAAGAGCAAAGCAGCTCTTCGAGTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR GCA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATAGATATCAGCCAACAGTaGACTCCGGCCTTTCAGATC +
Preference number: 4 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIDISQQ*TPAFQI
Trigger: GATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATC...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp ATGTGGAGGCCCAAAGGCCATTCACAGGAATCTTTTTaGGTCTATCTCTACTATCAGTTTCTCACTAACCCT +
Preference number: 4 (lower is better)
Translates to: MWRPKGHSQESF*VYLYYQFLTNP
Trigger: AGGGTTAGTGAGAAACTGATAGTAGAGATAGACCAAAAAAGATTCCTGTGAATGGCCTTTGGGCCTCCACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
3UTR CAA 72 bp AGTTGGTGTGATGAGAGTCATGCCAATAAGAAGCTGTaGTGGAGAGTTATGACTTTTGGACTACTTGAAAAC +
Preference number: 4 (lower is better)
Translates to: SWCDESHANKKL*WRVMTFGLLEN
Trigger: GTTTTCAAGTAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATCACACCAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CCA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGTAAATCTTCTGACATaGTTTGTATTCATCTGGAGG +
Preference number: 4 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYVNLLT*FVFIWR
Trigger: CCTCCAGATGAATACAAACCATGTCAGAAGATTTAC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
3UTR CAA 72 bp ATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTaGTATGCGTTTGTACATGGCTGTACATGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: IFEIYSKSCFAL*YAFVHGCTCSC
Trigger: ACAGGAACATGTACAGCCATGTACAAACGCATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS TCA 90 bp CGGAGCTGGAGGTTCTCGCACCTCCTGTGCAGGGCTGTTGGGCTCTaGGTGGAGCCCGGGGTACCCACAGGGTGGAAGGAGAGGGAGCGG +
Preference number: 5 (lower is better)
Translates to: RSWRFSHLLCRAVGL*VEPGVPTGWKERER
Trigger: CCGCTCCCTCTCCTTCCACCCTGTGGGTACCCCGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGAGGTGCGAGAACCTCCAGCTCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS GCA 90 bp CAGAGCTCTGCCCAGCCGCCTCAGCTTGGAGCCAGGAACCAGGTGTaGGGCCAATCGCGTGCTGGCCTCCATTCCGCAGCTGGCCTCCAG +
Preference number: 5 (lower is better)
Translates to: QSSAQPPQLGARNQV*GQSRAGLHSAAGLQ
Trigger: CTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGGCCGCACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGGCAGAGCTCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126637.8
ENSMUST00000163746.8
CDS CCA 90 bp GCCTCGCCGCTTCTTCTGCAGGATAGCCTGAGGGCCGGGAGCACCTaGAGGTGTGGGCAAGGCCTTCTGCGTCTGGAAGCTGGGGGACTT +
Preference number: 5 (lower is better)
Translates to: ASPLLLQDSLRAGST*RCGQGLLRLEAGGL
Trigger: AAGTCCCCCAGCTTCCAGACGCAGAAGGCCTTGCCCACACCTCCAGGTGCTCCCGGCCCTCAGGCTATCCTGCAGAAGAAGCGGCGAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCATTTCCTCCCCTGGCATaGCTGCCAGCAGCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: ARESQGSACLCLPGNGIPFPPLA*LPAAPP
Trigger: GGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAAA...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACCGCTGCCGCTGTTGTTaGCGCCTGGCAAAGGGGGCG +
Preference number: 5 (lower is better)
Translates to: RHGISLPGSCVATPGPGDRCRCC*RLAKGA
Trigger: CGCCCCCTTTGCCAGGCGCAAACAACAGCGGCAGCG...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAATGGATTCACCTTGGTaGGAGGGGCAGGCGGGGACA +
Preference number: 5 (lower is better)
Translates to: ARESQGSACLCLPGNGIPMDSPW*EGQAGT
Trigger: TGTCCCCGCCTGCCCCTCCAACCAAGGTGAATCCAT...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAACAGATGGATTCACCTaGGTTGGAGGGGCAGGCGGG +
Preference number: 5 (lower is better)
Translates to: ARESQGSACLCLPGNGIPTDGFT*VGGAGG
Trigger: CCCGCCTGCCCCTCCAACCAAGGTGAATCCATCTGT...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATTCCTGTGCAGGGCTGTaGGGCTCTGAGTGGAGCCCG +
Preference number: 5 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHSCAGL*GSEWSP
Trigger: CGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGA...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATCTGTGGTGGGCGATCTaGCAGGTGGGGCTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHLWWAI*QVGLEV
Trigger: CACCTCCAGCCCCACCTGCAAGATCGCCCACCACAG...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACCCCAGCCGCCTCAGCTaGGAGCCAGGAACCAGGTGT +
Preference number: 5 (lower is better)
Translates to: RHGISLPGSCVATPGPGDPSRLS*EPGTRC
Trigger: ACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGG...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS GCA 90 bp CGGCCAATCGCGTGCTGGCCTCCATTCCGCAGCTGGCCTCCAGGCTaGTGGCTTTTGCTGGAAAGCTCTGTGGTGGGCGATCTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: RPIACWPPFRSWPPG*WLLLESSVVGDLAG
Trigger: ACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126637.8
ENSMUST00000163746.8
CDS-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACGGGCCGCTGATGGCTTaGATAGGGAGCCGGGGAGAA +
Preference number: 5 (lower is better)
Translates to: RHGISLPGSCVATPGPGDGPLMA*IGSRGE
Trigger: TTCTCCCCGGCTCCCTATCAAAGCCATCAGCGGCCC...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAAATGTGTACGGCACCCAGCTTCCTGTGCAGGGCTGTaGGGCTCTGAGTGGAGCCCG +
Preference number: 5 (lower is better)
Translates to: CLPLPPRQWDTKCVRHPASCAGL*GSEWSP
Trigger: CGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGA...AGCTGGGTGCCGTACACATTTGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 90 bp GCAGCTGGCCTCCAGGCTGCTGGCTTTTGCTGGAAAGCTCTGTGGTaGGCGATCTTGCAGGTGGGGCTGGAGGTGGGTTTAGCTTTCCCC +
Preference number: 5 (lower is better)
Translates to: AAGLQAAGFCWKALW*AILQVGLEVGLAFP
Trigger: GGGGAAAGCTAAACCCACCTCCAGCCCCACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCCTCCCCGGCAATGGGATACCAGCAGCTCCTCCCTCTTaGCTGGTTCCTTTTGAACCC +
Preference number: 5 (lower is better)
Translates to: ARESQGSACLCLPGNGIPAAPPS*LVPFEP
Trigger: GGGTTCAAAAGGAACCAGCAAAGAGGGAGGAGCTGC...TGGTATCCCATTGCCGGGGAGGCAGAGGCAGGCAGATCCCTGCGACTCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATACAGATGGATTCACCTaGGTTGGAGGGGCAGGCGGG +
Preference number: 5 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHTDGFT*VGGAGG
Trigger: CCCGCCTGCCCCTCCAACCAAGGTGAATCCATCTGT...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACACAGATGGATTCACCTaGGTTGGAGGGGCAGGCGGG +
Preference number: 5 (lower is better)
Translates to: RHGISLPGSCVATPGPGDTDGFT*VGGAGG
Trigger: CCCGCCTGCCCCTCCAACCAAGGTGAATCCATCTGT...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGTCCTGTGCAGGGCTGTaGGGCTCTGAGTGGAGCCCG +
Preference number: 5 (lower is better)
Translates to: KRERDMASRSLEAVWPHQSCAGL*GSEWSP
Trigger: CGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGA...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGCTGTGGTGGGCGATCTaGCAGGTGGGGCTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: KRERDMASRSLEAVWPHQLWWAI*QVGLEV
Trigger: CACCTCCAGCCCCACCTGCAAGATCGCCCACCACAG...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 90 bp TCCGCAGCTGGCCTCCAGGCTGCTGGCTTTTGCTGGAAAGCTCTGTaGTGGGCGATCTTGCAGGTGGGGCTGGAGGTGGGTTTAGCTTTC +
Preference number: 5 (lower is better)
Translates to: SAAGLQAAGFCWKAL*WAILQVGLEVGLAF
Trigger: GAAAGCTAAACCCACCTCCAGCCCCACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACCCGCAGGCGTGTTCCTaGCTGGATATCAGCCAACAG +
Preference number: 5 (lower is better)
Translates to: RHGISLPGSCVATPGPGDPQACS*LDISQQ
Trigger: CTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGG...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCTGCGTCTCTGAGGCATaGCCTAGCCTGGGAGATGCA +
Preference number: 5 (lower is better)
Translates to: IPRLAWLARESQGSACLCCVSEA*PSLGDA
Trigger: TGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGCA...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACTGCGTCTCTGAGGCATaGCCTAGCCTGGGAGATGCA +
Preference number: 5 (lower is better)
Translates to: RHGISLPGSCVATPGPGDCVSEA*PSLGDA
Trigger: TGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGCA...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCACGCTGCCGCTGTTGTTaGCGCCTGGCAAAGGGGGCG +
Preference number: 5 (lower is better)
Translates to: SLQACAIDTVDTTGWDRARCRCC*RLAKGA
Trigger: CGCCCCCTTTGCCAGGCGCAAACAACAGCGGCAGCG...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATCCAGGCTGCTGGCTTTaGCTGGAAAGCTCTGTGGTG +
Preference number: 5 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHPGCWL*LESSVV
Trigger: CACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGG...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS GCA 90 bp TCATCAATCGCGTGCTGGCCTCCATTCCGCAGCTGGCCTCCAGGCTaGTGGCTTTTGCTGGAAAGCTCTGTGGTGGGCGATCTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: SSIACWPPFRSWPPG*WLLLESSVVGDLAG
Trigger: ACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS CCA 90 bp TTTCTGCTTTTGATGTCATCAGAGCTCTGCCCAGCCGCCTCAGCTTaGAGCCAGGAACCAGGTGTGCGGCCAATCGCGTGCTGGCCTCCA +
Preference number: 5 (lower is better)
Translates to: FLLLMSSELCPAASA*SQEPGVRPIACWPP
Trigger: TGGAGGCCAGCACGCGATTGGCCGCACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACATCAAAAGCAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126637.8
ENSMUST00000163746.8
CDS-3UTR CAA 90 bp ATTCCCCGATTAGCTTGGCTGGCCAGGGAGTCGCAGGGATCTGCCTGCCTCTGCGCAGCTCCTCCCTCTTaGCTGGTTCCTTTTGAACCC +
Preference number: 5 (lower is better)
Translates to: IPRLAWLARESQGSACLCAAPPS*LVPFEP
Trigger: GGGTTCAAAAGGAACCAGCAAAGAGGGAGGAGCTGC...GCAGAGGCAGGCAGATCCCTGCGACTCCCTGGCCAGCCAAGCTAATCGGGGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGATGGATTCACCTTGGTaGGAGGGGCAGGCGGGGACA +
Preference number: 5 (lower is better)
Translates to: KRERDMASRSLEAVWPHQMDSPW*EGQAGT
Trigger: TGTCCCCGCCTGCCCCTCCAACCAAGGTGAATCCAT...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCGCTGCCGCTGTTGTTaGCGCCTGGCAAAGGGGGCG +
Preference number: 5 (lower is better)
Translates to: STAILSTVRAQTASYLFPRCRCC*RLAKGA
Trigger: CGCCCCCTTTGCCAGGCGCAAACAACAGCGGCAGCG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCACTGTGGTGGGCGATCTaGCAGGTGGGGCTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: SLQACAIDTVDTTGWDRALWWAI*QVGLEV
Trigger: CACCTCCAGCCCCACCTGCAAGATCGCCCACCACAG...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGCCGCAGGCGTGTTCCTaGCTGGATATCAGCCAACAG +
Preference number: 5 (lower is better)
Translates to: KRERDMASRSLEAVWPHQPQACS*LDISQQ
Trigger: CTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGG...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGACCTGGGGACCTTTGCTGGTTCCTTTaGAACCCTCGATCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: RHGISLPGSCVATPGPGDLCWFL*NPRSVG
Trigger: CCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAG...GTCCCCAGGTCCTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TGCCCCGGCCTGGAGTGGCCCTCTGTCTATTCAGGGCAGCTGACTTGGCTGCATCTTTGCTGGTTCCTTTaGAACCCTCGATCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: CPGLEWPSVYSGQLTWLHLCWFL*NPRSVG
Trigger: CCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAG...ATGCAGCCAAGTCAGCTGCCCTGAATAGACAGAGGGCCACTCCAGGCCGGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCCCAGCCGCCTCAGCTaGGAGCCAGGAACCAGGTGT +
Preference number: 5 (lower is better)
Translates to: STAILSTVRAQTASYLFPPSRLS*EPGTRC
Trigger: ACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS TCA 90 bp CCTGGCATTGCTGCCAGCAGCTCCTCCCTCTTTGCTGGTTCCTTTTaGACCCTCGATCTGTGGGGCACTGCGGTCATTGATCTGGGTGAC +
Preference number: 5 (lower is better)
Translates to: PGIAASSSSLFAGSF*TLDLWGTAVIDLGD
Trigger: GTCACCCAGATCAATGACCGCAGTGCCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAGAGGGAGGAGCTGCTGGCAGCAATGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGGCAGCTCCTCCCTCTTaGCTGGTTCCTTTTGAACCC +
Preference number: 5 (lower is better)
Translates to: KRERDMASRSLEAVWPHQAAPPS*LVPFEP
Trigger: GGGTTCAAAAGGAACCAGCAAAGAGGGAGGAGCTGC...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS GCA 90 bp GCACTGCGGTCATTGATCTGGGTGACTTTCCGCAGGCGTGTTCCTTaGTGGATATCAGCCAACAGTGCACTCCGGCCTTTCAGATCTGGC +
Preference number: 5 (lower is better)
Translates to: ALRSLIWVTFRRRVP*WISANSALRPFRSG
Trigger: GCCAGATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGACCGCAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGGGGCACTGCGGTCATaGATCTGGGTGACTTTCCGC +
Preference number: 5 (lower is better)
Translates to: STAILSTVRAQTASYLFPGALRS*IWVTFR
Trigger: GCGGAAAGTCACCCAGATCAATGACCGCAGTGCCCC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AAAAGGGAGCGAGACATGGCATCTCGCTCCCTGGAAGCTGTGTGGCCACACCAGCTTTGCTGGTTCCTTTaGAACCCTCGATCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: KRERDMASRSLEAVWPHQLCWFL*NPRSVG
Trigger: CCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAG...CTGGTGTGGCCACACAGCTTCCAGGGAGCGAGATGCCATGTCTCGCTCCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCATGCGTCTCTGAGGCATaGCCTAGCCTGGGAGATGCA +
Preference number: 5 (lower is better)
Translates to: SLQACAIDTVDTTGWDRACVSEA*PSLGDA
Trigger: TGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGCA...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp AGCCTGCAAGCATGTGCTATAGACACAGTGGACACCACAGGGTGGGATAGGGCACCAGGCTGCTGGCTTTaGCTGGAAAGCTCTGTGGTG +
Preference number: 5 (lower is better)
Translates to: SLQACAIDTVDTTGWDRAPGCWL*LESSVV
Trigger: CACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGG...TGCCCTATCCCACCCTGTGGTGTCCACTGTGTCTATAGCACATGCTTGCAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTCCCAGCCGCCTCAGCTaGGAGCCAGGAACCAGGTGT +
Preference number: 5 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIPSRLS*EPGTRC
Trigger: ACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGG...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 90 bp CTGCGGTCATTGATCTGGGTGACTTTCCGCAGGCGTGTTCCTTGCTaGATATCAGCCAACAGTGCACTCCGGCCTTTCAGATCTGGCTTC +
Preference number: 5 (lower is better)
Translates to: LRSLIWVTFRRRVPC*ISANSALRPFRSGF
Trigger: GAAGCCAGATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGACCGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTTTTCCTCCCCTGGCATaGCTGCCAGCAGCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIFPPLA*LPAAPP
Trigger: GGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAAA...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTGGGCCGCTGATGGCTTaGATAGGGAGCCGGGGAGAA +
Preference number: 5 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIGPLMA*IGSRGE
Trigger: TTCTCCCCGGCTCCCTATCAAAGCCATCAGCGGCCC...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 90 bp GTTCCTTTTGAACCCTCGATCTGTGGGGCACTGCGGTCATTGATCTaGGTGACTTTCCGCAGGCGTGTTCCTTGCTGGATATCAGCCAAC +
Preference number: 5 (lower is better)
Translates to: VPFEPSICGALRSLI*VTFRRRVPCWISAN
Trigger: GTTGGCTGATATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGACCGCAGTGCCCCACAGATCGAGGGTTCAAAAGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCGCAGCTCCTCCCTCTTaGCTGGTTCCTTTTGAACCC +
Preference number: 5 (lower is better)
Translates to: STAILSTVRAQTASYLFPAAPPS*LVPFEP
Trigger: GGGTTCAAAAGGAACCAGCAAAGAGGGAGGAGCTGC...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GGCAGAAGGAAGTGGAGACTGGGCACTAGGGATGCTGTAAACAGTAAGAGCATTATGGATTCACCTTGGTaGGAGGGGCAGGCGGGGACA +
Preference number: 5 (lower is better)
Translates to: GRRKWRLGTRDAVNSKSIMDSPW*EGQAGT
Trigger: TGTCCCCGCCTGCCCCTCCAACCAAGGTGAATCCAT...AATGCTCTTACTGTTTACAGCATCCCTAGTGCCCAGTCTCCACTTCCTTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp TCTACAGCTATTCTGAGCACAGTGAGGGCTCAGACGGCTTCCTACCTCTTTCCCCTTTGCTGGTTCCTTTaGAACCCTCGATCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: STAILSTVRAQTASYLFPLCWFL*NPRSVG
Trigger: CCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAG...GGGAAAGAGGTAGGAAGCCGTCTGAGCCCTCACTGTGCTCAGAATAGCTGTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATACGCTGCCGCTGTTGTTaGCGCCTGGCAAAGGGGGCG +
Preference number: 5 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLIRCRCC*RLAKGA
Trigger: CGCCCCCTTTGCCAGGCGCAAACAACAGCGGCAGCG...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATCTGTGGTGGGCGATCTaGCAGGTGGGGCTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYLWWAI*QVGLEV
Trigger: CACCTCCAGCCCCACCTGCAAGATCGCCCACCACAG...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTACCCAGCCGCCTCAGCTaGGAGCCAGGAACCAGGTGT +
Preference number: 5 (lower is better)
Translates to: DESHANKKLLWRVMTFGLPSRLS*EPGTRC
Trigger: ACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGG...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTATTTCCTCCCCTGGCATaGCTGCCAGCAGCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: DESHANKKLLWRVMTFGLFPPLA*LPAAPP
Trigger: GGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAAA...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTAGGGCCGCTGATGGCTTaGATAGGGAGCCGGGGAGAA +
Preference number: 5 (lower is better)
Translates to: DESHANKKLLWRVMTFGLGPLMA*IGSRGE
Trigger: TTCTCCCCGGCTCCCTATCAAAGCCATCAGCGGCCC...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATGGGCCGCTGATGGCTTaGATAGGGAGCCGGGGAGAA +
Preference number: 5 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYGPLMA*IGSRGE
Trigger: TTCTCCCCGGCTCCCTATCAAAGCCATCAGCGGCCC...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATATCCTGTGCAGGGCTGTaGGGCTCTGAGTGGAGCCCG +
Preference number: 5 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLISCAGL*GSEWSP
Trigger: CGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGA...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTAATGGATTCACCTTGGTaGGAGGGGCAGGCGGGGACA +
Preference number: 5 (lower is better)
Translates to: DESHANKKLLWRVMTFGLMDSPW*EGQAGT
Trigger: TGTCCCCGCCTGCCCCTCCAACCAAGGTGAATCCAT...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp GATGAGAGTCATGCCAATAAGAAGCTGTTGTGGAGAGTTATGACTTTTGGACTACCGCAGGCGTGTTCCTaGCTGGATATCAGCCAACAG +
Preference number: 5 (lower is better)
Translates to: DESHANKKLLWRVMTFGLPQACS*LDISQQ
Trigger: CTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGG...TAGTCCAAAAGTCATAACTCTCCACAACAGCTTCTTATTGGCATGACTCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATCCGCAGGCGTGTTCCTaGCTGGATATCAGCCAACAG +
Preference number: 5 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYPQACS*LDISQQ
Trigger: CTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGG...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp ATGAGCTATATACATTTGTGGTCTGCAGGGGTGGGAGGATATAAAAATCTCATAACAGATGGATTCACCTaGGTTGGAGGGGCAGGCGGG +
Preference number: 5 (lower is better)
Translates to: MSYIHLWSAGVGGYKNLITDGFT*VGGAGG
Trigger: CCCGCCTGCCCCTCCAACCAAGGTGAATCCATCTGT...TATGAGATTTTTATATCCTCCCACCCCTGCAGACCACAAATGTATATAGCTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS-3UTR CAA 90 bp CAACGGGACCAGATATTTGAGATATACTCGAAGAGCTGCTTTGCTCTTTTGTATCCAGGCTGCTGGCTTTaGCTGGAAAGCTCTGTGGTG +
Preference number: 5 (lower is better)
Translates to: QRDQIFEIYSKSCFALLYPGCWL*LESSVV
Trigger: CACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGG...ATACAAAAGAGCAAAGCAGCTCTTCGAGTATATCTCAAATATCTGGTCCCGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CAA 90 bp GGGCGAGGAGGGACAGGCCTGGCAGAGCTGTGCGTCTCTGAGGCATaGCCTAGCCTGGGAGATGCAGGAGCGGGAAGCGGGCCGCTGATG +
Preference number: 6 (lower is better)
Translates to: GRGGTGLAELCVSEA*PSLGDAGAGSGPLM
Trigger: CATCAGCGGCCCGCTTCCCGCTCCTGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCCTGTCCCTCCTCGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS TCA 72 bp GTTCCTGGGCCTCGCCGCTTCTTCTGCAGGATAGCCTaGGGGCCGGGAGCACCTGGAGGTGTGGGCAAGGCC +
Preference number: 6 (lower is better)
Translates to: VPGPRRFFCRIA*GPGAPGGVGKA
Trigger: GGCCTTGCCCACACCTCCAGGTGCTCCCGGCCCTCAGGCTATCCTGCAGAAGAAGCGGCGAGGCCCAGGAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 72 bp TGGAGCCAGGAACCAGGTGTGCGGCCAATCGCGTGCTaGCCTCCATTCCGCAGCTGGCCTCCAGGCTGCTGG +
Preference number: 6 (lower is better)
Translates to: WSQEPGVRPIAC*PPFRSWPPGCW
Trigger: CCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGGCCGCACACCTGGTTCCTGGCTCCA
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126637.8
ENSMUST00000163746.8
CDS GCA 72 bp GGACAGGCCTGGCAGAGCTGTGCGTCTCTGAGGCATTaGCTAGCCTGGGAGATGCAGGAGCGGGAAGCGGGC +
Preference number: 6 (lower is better)
Translates to: GQAWQSCASLRH*LAWEMQEREAG
Trigger: GCCCGCTTCCCGCTCCTGCATCTCCCAGGCTAGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCCTGTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CAA 72 bp GGAGCTGGAGGTTCTCGCACCTCCTGTGCAGGGCTGTaGGGCTCTGAGTGGAGCCCGGGGTACCCACAGGGT +
Preference number: 6 (lower is better)
Translates to: GAGGSRTSCAGL*GSEWSPGYPQG
Trigger: ACCCTGTGGGTACCCCGGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGAGGTGCGAGAACCTCCAGCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 72 bp GGCCTCCAGGCTGCTGGCTTTTGCTGGAAAGCTCTGTaGTGGGCGATCTTGCAGGTGGGGCTGGAGGTGGGT +
Preference number: 6 (lower is better)
Translates to: GLQAAGFCWKAL*WAILQVGLEVG
Trigger: ACCCACCTCCAGCCCCACCTGCAAGATCGCCCACCACAGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 72 bp GTGCGGCCAATCGCGTGCTGGCCTCCATTCCGCAGCTaGCCTCCAGGCTGCTGGCTTTTGCTGGAAAGCTCT +
Preference number: 6 (lower is better)
Translates to: VRPIACWPPFRS*PPGCWLLLESS
Trigger: AGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGGCCGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126637.8
ENSMUST00000163746.8
CDS CCA 72 bp AGAGATCTCCCAGGGCAGGGGGTGTGTTTCCTCCCCTaGCATTGCTGCCAGCAGCTCCTCCCTCTTTGCTGG +
Preference number: 6 (lower is better)
Translates to: RDLPGQGVCFLP*HCCQQLLPLCW
Trigger: CCAGCAAAGAGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAAACACACCCCCTGCCCTGGGAGATCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 72 bp TTGATGTCATCAGAGCTCTGCCCAGCCGCCTCAGCTTaGAGCCAGGAACCAGGTGTGCGGCCAATCGCGTGC +
Preference number: 6 (lower is better)
Translates to: LMSSELCPAASA*SQEPGVRPIAC
Trigger: GCACGCGATTGGCCGCACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACATCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126637.8
ENSMUST00000163746.8
CDS CAA 72 bp TCTCCCAGGGCAGGGGGTGTGTTTCCTCCCCTGGCATaGCTGCCAGCAGCTCCTCCCTCTTTGCTGGTTCCT +
Preference number: 6 (lower is better)
Translates to: SPRAGGVFPPLA*LPAAPPSLLVP
Trigger: AGGAACCAGCAAAGAGGGAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAAACACACCCCCTGCCCTGGGAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CAA 90 bp GTTTCTGCTTTTGATGTCATCAGAGCTCTGCCCAGCCGCCTCAGCTaGGAGCCAGGAACCAGGTGTGCGGCCAATCGCGTGCTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: VSAFDVIRALPSRLS*EPGTRCAANRVLAS
Trigger: GGAGGCCAGCACGCGATTGGCCGCACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACATCAAAAGCAGAAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126637.8
ENSMUST00000163746.8
CDS CAA 90 bp GTTTCTGCTTTTGATGTCATCAGAGCTCTGCCCAGCCGCCTCAGCTaGGAGCCAGGAACCAGGTGTGCGGCTTCTGGGGACCTTGCTGGG +
Preference number: 6 (lower is better)
Translates to: VSAFDVIRALPSRLS*EPGTRCAASGDLAG
Trigger: CCCAGCAAGGTCCCCAGAAGCCGCACACCTGGTTCCTGGCTCCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACATCAAAAGCAGAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS CCA 72 bp CCCTGGCATTGCTGCCAGCAGCTCCTCCCTCTTTGCTaGTTCCTTTTGAACCCTCGATCTGTGGGGCACTGC +
Preference number: 6 (lower is better)
Translates to: PWHCCQQLLPLC*FLLNPRSVGHC
Trigger: GCAGTGCCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAGAGGGAGGAGCTGCTGGCAGCAATGCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 72 bp AAGTCATCAATCGCGTGCTGGCCTCCATTCCGCAGCTaGCCTCCAGGCTGCTGGCTTTTGCTGGAAAGCTCT +
Preference number: 6 (lower is better)
Translates to: KSSIACWPPFRS*PPGCWLLLESS
Trigger: AGAGCTTTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGATGACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS CAA 90 bp GGCACTGCGGTCATTGATCTGGGTGACTTTCCGCAGGCGTGTTCCTaGCTGGATATCAGCCAACAGTGCACTCCGGCCTTTCAGATCTGG +
Preference number: 6 (lower is better)
Translates to: GTAVIDLGDFPQACS*LDISQQCTPAFQIW
Trigger: CCAGATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGACCGCAGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS TCA 72 bp GCTGCCAGCAGCTCCTCCCTCTTTGCTGGTTCCTTTTaGACCCTCGATCTGTGGGGCACTGCGGTCATTGAT +
Preference number: 6 (lower is better)
Translates to: AASSSSLFAGSF*TLDLWGTAVID
Trigger: ATCAATGACCGCAGTGCCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAGAGGGAGGAGCTGCTGGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 72 bp GAACCCTCGATCTGTGGGGCACTGCGGTCATTGATCTaGGTGACTTTCCGCAGGCGTGTTCCTTGCTGGATA +
Preference number: 6 (lower is better)
Translates to: EPSICGALRSLI*VTFRRRVPCWI
Trigger: TATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGACCGCAGTGCCCCACAGATCGAGGGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CAA 72 bp CCTTTTGAACCCTCGATCTGTGGGGCACTGCGGTCATaGATCTGGGTGACTTTCCGCAGGCGTGTTCCTTGC +
Preference number: 6 (lower is better)
Translates to: PFEPSICGALRS*IWVTFRRRVPC
Trigger: GCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGACCGCAGTGCCCCACAGATCGAGGGTTCAAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS GCA 72 bp TCATTGATCTGGGTGACTTTCCGCAGGCGTGTTCCTTaGTGGATATCAGCCAACAGTGCACTCCGGCCTTTC +
Preference number: 6 (lower is better)
Translates to: SLIWVTFRRRVP*WISANSALRPF
Trigger: GAAAGGCCGGAGTGCACTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CCA 72 bp TTGATCTGGGTGACTTTCCGCAGGCGTGTTCCTTGCTaGATATCAGCCAACAGTGCACTCCGGCCTTTCAGA +
Preference number: 6 (lower is better)
Translates to: LIWVTFRRRVPC*ISANSALRPFR
Trigger: TCTGAAAGGCCGGAGTGCACTGTTGGCTGATATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS CAA 90 bp TTGCTGGTTCCTTTTGAACCCTCGATCTGTGGGGCACTGCGGTCATaGATCTGGGTGACTTTCCGCAGGCGTGTTCCTTGCTGGATATCA +
Preference number: 6 (lower is better)
Translates to: LLVPFEPSICGALRS*IWVTFRRRVPCWIS
Trigger: TGATATCCAGCAAGGAACACGCCTGCGGAAAGTCACCCAGATCAATGACCGCAGTGCCCCACAGATCGAGGGTTCAAAAGGAACCAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126637.8
ENSMUST00000132855.8
ENSMUST00000163746.8
ENSMUST00000172046.2
CDS GCA 72 bp GGAGCCAGGAACCAGGTGTGCGGCTTCTGGGGACCTTaGTGGGGTAAATCTTCTGACATGGTTTGTATTCAT +
Preference number: 6 (lower is better)
Translates to: GARNQVCGFWGP*WGKSSDMVCIH
Trigger: ATGAATACAAACCATGTCAGAAGATTTACCCCAGCAAGGTCCCCAGAAGCCGCACACCTGGTTCCTGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2
CDS CCA 72 bp GCCAGGAACCAGGTGTGCGGCTTCTGGGGACCTTGCTaGGGTAAATCTTCTGACATGGTTTGTATTCATCTG +
Preference number: 6 (lower is better)
Translates to: ARNQVCGFWGPC*GKSSDMVCIHL
Trigger: CAGATGAATACAAACCATGTCAGAAGATTTACCCCAGCAAGGTCCCCAGAAGCCGCACACCTGGTTCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000132855.8
ENSMUST00000172046.2