Pregenerated sensors for WFDC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076434Ensembl transcript IDs: ENSMUST00000103096.10, ENSMUST00000109328.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTCACACTGCCAAATCCATGCACAGGAAGACTCACTGGGTCTCCTaGCTCAGTGATGCCTACACAGTACAGACAAGAGGGTCCATGCCA | + |
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Preference number: 1 (lower is better) Translates to: FHTAKSMHRKTHWVS*LSDAYTVQTRGSMP Trigger: TGGCATGGACCCTCTTGTCTGTACTGTGTAGGCATCACTGAGGCAGGAGACCCAGTGAGTCTTCCTGTGCATGGATTTGGCAGTGTGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR GCA 90 bp | GCATTTTATTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATaGTACATGCAAGTAGCAGTAGATACGAGGAAAAGGCCTGATACT | + |
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Preference number: 1 (lower is better) Translates to: AFYWEREAPSTRAVP*YMQVAVDTRKRPDT Trigger: AGTATCAGGCCTTTTCCTCGTATCTACTGCTACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAAAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR-3UTR CCA 90 bp | CATTTTATTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCCCCTTCCTGGCTTCCTaGAGCTCCAAGCAAATCGGG | + |
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Preference number: 2 (lower is better) Translates to: HFIGKEKRPAPGQFHATCPFLAS*SSKQIG Trigger: CCCGATTTGCTTGGAGCTCCAGGAAGCCAGGAAGGG...GCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAAAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR-3UTR CCA 90 bp | ATTTTATTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCACCCTTCCTGGCTTCCTaGAGCTCCAAGCAAATCGGG | + |
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Preference number: 2 (lower is better) Translates to: ILLGKRSAQHQGSSMLHAPFLAS*SSKQIG Trigger: CCCGATTTGCTTGGAGCTCCAGGAAGCCAGGAAGGG...TGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR-3UTR CCA 90 bp | GCCAAATCCATGCACAGGAAGACTCACTGGGTCTCCTGCCTCAGTGATGCCTACATGCCAGCATTTTATTaGGAAAGAGAAGCGCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: AKSMHRKTHWVSCLSDAYMPAFY*EREAPS Trigger: GCTGGGCGCTTCTCTTTCCCAATAAAATGCTGGCAT...GTAGGCATCACTGAGGCAGGAGACCCAGTGAGTCTTCCTGTGCATGGATTTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR GCA 72 bp | GCCAAATCCATGCACAGGAAGACTCACTGGGTCTCCTaGCTCAGTGATGCCTACACAGTACAGACAAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: AKSMHRKTHWVS*LSDAYTVQTRG Trigger: CCCTCTTGTCTGTACTGTGTAGGCATCACTGAGGCAGGAGACCCAGTGAGTCTTCCTGTGCATGGATTTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR GCA 72 bp | TGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATaGTACATGCAAGTAGCAGTAGATACGAGGAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: WEREAPSTRAVP*YMQVAVDTRKR Trigger: CCTTTTCCTCGTATCTACTGCTACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR CCA 72 bp | ACAGTACAGACAAGAGGGTCCATGCCAGCATTTTATTaGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCA | + |
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Preference number: 3 (lower is better) Translates to: TVQTRGSMPAFY*EREAPSTRAVP Trigger: TGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAAAATGCTGGCATGGACCCTCTTGTCTGTACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| 3UTR TCA 72 bp | CTACATGCAAGTAGCAGTAGATACGAGGAAAAGGCCTaGTACTCCAGGGAGTGTCACAAGCCCCAGGATGTC | + |
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Preference number: 3 (lower is better) Translates to: LHASSSRYEEKA*YSRECHKPQDV Trigger: GACATCCTGGGGCTTGTGACACTCCCTGGAGTATCAGGCCTTTTCCTCGTATCTACTGCTACTTGCATGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR CCA 90 bp | GGAGTGTCACAAGCCCCAGGATGTCACCCCTTCCTGGCTTCCTGGAGCTCCAAGGAGGGGCTGGAGTCCTaGGATGCAGAAGCGGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: GVSQAPGCHPFLASWSSKEGLES*DAEAAA Trigger: TGCGGCCGCTTCTGCATCCCAGGACTCCAGCCCCTC...CTTGGAGCTCCAGGAAGCCAGGAAGGGGTGACATCCTGGGGCTTGTGACACTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR CCA 90 bp | ACTGCCAAATCCATGCACAGGAAGACTCACTGGGTCTCCTGCCTCAGTGATGCCGAGGGGCTGGAGTCCTaGGATGCAGAAGCGGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: TAKSMHRKTHWVSCLSDAEGLES*DAEAAA Trigger: TGCGGCCGCTTCTGCATCCCAGGACTCCAGCCCCTC...GGCATCACTGAGGCAGGAGACCCAGTGAGTCTTCCTGTGCATGGATTTGGCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR CCA 90 bp | CTGCCAAATCCATGCACAGGAAGACTCACTGGGTCTCCTGCCTCAGTGATGCCTTCTCCGCGGCAGGCATaGCCACACCCTGTGCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LPNPCTGRLTGSPASVMPSPRQA*PHPVLQ Trigger: CTGCAGCACAGGGTGTGGCCATGCCTGCCGCGGAGA...AGGCATCACTGAGGCAGGAGACCCAGTGAGTCTTCCTGTGCATGGATTTGGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR TCA 90 bp | GGGAGTGTCACAAGCCCCAGGATGTCACCCCTTCCTGGCTTCCTGGAGCTCCAATCAGGTTGGAGTCTTTaGGCTGTTGGAGGGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GSVTSPRMSPLPGFLELQSGWSL*AVGGAG Trigger: TCCAGCCCCTCCAACAGCTCAAAGACTCCAACCTGA...TTGGAGCTCCAGGAAGCCAGGAAGGGGTGACATCCTGGGGCTTGTGACACTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR TCA 90 bp | GAGGGTCCATGCCAGCATTTTATTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGCCGGTACACAGCTCCTaGCATGGAAGAGGGTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: EGPCQHFIGKEKRPAPGQPVHSS*HGRGSA Trigger: GGCTGACCCTCTTCCATGTCAGGAGCTGTGTACCGG...CTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAAAATGCTGGCATGGACCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR GCA 90 bp | CCAAATCCATGCACAGGAAGACTCACTGGGTCTCCTGCCTCAGTGATGCCTACAGCTGGAGTCCTGGGATaGAGAAGCGGCCGCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: PNPCTGRLTGSPASVMPTAGVLG*RSGRSL Trigger: CAGGCTGCGGCCGCTTCTGCATCCCAGGACTCCAGC...TGTAGGCATCACTGAGGCAGGAGACCCAGTGAGTCTTCCTGTGCATGGATTTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR GCA 90 bp | AGACTCACTGGGTCTCCTGCCTCAGTGATGCCTACACAGTACAGACAAGAGGGTGCTGGAGTCCTGGGATaGAGAAGCGGCCGCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RLTGSPASVMPTQYRQEGAGVLG*RSGRSL Trigger: CAGGCTGCGGCCGCTTCTGCATCCCAGGACTCCAGC...ACCCTCTTGTCTGTACTGTGTAGGCATCACTGAGGCAGGAGACCCAGTGAGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR GCA 90 bp | ATACGAGGAAAAGGCCTGATACTCCAGGGAGTGTCACAAGCCCCAGGATGTCACGGCCACACCCTGTGCTaGAGCATTTGTGCCCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: IRGKGLILQGVSQAPGCHGHTLC*SICAPG Trigger: CCCAGGGGCACAAATGCTGCAGCACAGGGTGTGGCC...GTGACATCCTGGGGCTTGTGACACTCCCTGGAGTATCAGGCCTTTTCCTCGTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR TCA 90 bp | ATACGAGGAAAAGGCCTGATACTCCAGGGAGTGTCACAAGCCCCAGGATGTCACAGGATTCTGGGACATTaGCCATCCCGCCCTCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: IRGKGLILQGVSQAPGCHRILGH*PSRPPS Trigger: CGAGGGAGGGCGGGATGGTCAATGTCCCAGAATCCT...GTGACATCCTGGGGCTTGTGACACTCCCTGGAGTATCAGGCCTTTTCCTCGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR GCA 90 bp | TGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCAAGTAGCACATGGCCACACCCTGTaGTGCAGCATTTGTGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: WEREAPSTRAVPCYMQVAHGHTL*CSICAP Trigger: AGGGGCACAAATGCTGCAGCACAGGGTGTGGCCATG...TGCTACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR CCA 90 bp | TGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCAAGTAGCAAGCTGTTGGAGGGGCTaGAGTCCTGGGATGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: WEREAPSTRAVPCYMQVASCWRG*SPGMQK Trigger: CTTCTGCATCCCAGGACTCCAGCCCCTCCAACAGCT...TGCTACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR CCA 90 bp | TTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCAAGTAGCGAGTCTTTGAGCTGTTaGAGGGGCTGGAGTCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LGKRSAQHQGSSMLHASSESLSC*RGWSPG Trigger: CCCAGGACTCCAGCCCCTCCAACAGCTCAAAGACTC...GCTACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR TCA 90 bp | TTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCAAGTAGCTCAGGTTGGAGTCTTTaGGCTGTTGGAGGGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LGKRSAQHQGSSMLHASSSGWSL*AVGGAG Trigger: TCCAGCCCCTCCAACAGCTCAAAGACTCCAACCTGA...GCTACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR CCA 90 bp | ATACGAGGAAAAGGCCTGATACTCCAGGGAGTGTCACAAGCCCCAGGATGTCACAGCTGTTGGAGGGGCTaGAGTCCTGGGATGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: IRGKGLILQGVSQAPGCHSCWRG*SPGMQK Trigger: CTTCTGCATCCCAGGACTCCAGCCCCTCCAACAGCT...GTGACATCCTGGGGCTTGTGACACTCCCTGGAGTATCAGGCCTTTTCCTCGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR GCA 90 bp | CATTTTATTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCCAATGCGTGCTCTCCTaGAGCTACCCAAGATGCCAG | + |
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Preference number: 4 (lower is better) Translates to: HFIGKEKRPAPGQFHATCQCVLS*SYPRCQ Trigger: CTGGCATCTTGGGTAGCTGCAGGAGAGCACGCATTG...GCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR CCA 90 bp | ATTTTATTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCAACACAGCTCCTGACATaGAAGAGGGTCAGCCGGACA | + |
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Preference number: 4 (lower is better) Translates to: ILLGKRSAQHQGSSMLHATQLLT*KRVSRT Trigger: TGTCCGGCTGACCCTCTTCCATGTCAGGAGCTGTGT...TGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR GCA 90 bp | TTATTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCAAGTAGTTCTCATCCATCATaGACTGGACAATACACAGGC | + |
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Preference number: 4 (lower is better) Translates to: LLGKRSAQHQGSSMLHASSSHPS*TGQYTG Trigger: GCCTGTGTATTGTCCAGTGCATGATGGATGAGAACT...ACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS GCA 90 bp | GCCCTCCCTCGATGTCTCCGCGGCAGGCATGGCCACACCCTGTGCTaGAGCATTTGTGCCCCTGGGGACAGGATTCGTCTCCGGTACACA | + |
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Preference number: 5 (lower is better) Translates to: ALPRCLRGRHGHTLC*SICAPGDRIRLRYT Trigger: TGTGTACCGGAGACGAATCCTGTCCCCAGGGGCACAAATGCTGCAGCACAGGGTGTGGCCATGCCTGCCGCGGAGACATCGAGGGAGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR CAA 90 bp | GGAGTGTCACAAGCCCCAGGATGTCACCCCTTCCTGGCTTCCTGGAGCTCCAAGGGAGTCTTTGAGCTGTaGGAGGGGCTGGAGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: GVSQAPGCHPFLASWSSKGVFEL*EGLESW Trigger: CCAGGACTCCAGCCCCTCCAACAGCTCAAAGACTCC...CTTGGAGCTCCAGGAAGCCAGGAAGGGGTGACATCCTGGGGCTTGTGACACTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS-3UTR CAA 90 bp | ACTCCAGGGAGTGTCACAAGCCCCAGGATGTCACCCCTTCCTGGCTTCCTGGAGGGAGTCTTTGAGCTGTaGGAGGGGCTGGAGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: TPGSVTSPRMSPLPGFLEGVFEL*EGLESW Trigger: CCAGGACTCCAGCCCCTCCAACAGCTCAAAGACTCC...CTCCAGGAAGCCAGGAAGGGGTGACATCCTGGGGCTTGTGACACTCCCTGGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS CCA 90 bp | GTGCCCCTGGGGACAGGATTCGTCTCCGGTACACAGCTCCTGACATaGAAGAGGGTCAGCCGGACATTCACCTCTCAATGCGTGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: VPLGTGFVSGTQLLT*KRVSRTFTSQCVLS Trigger: GGAGAGCACGCATTGAGAGGTGAATGTCCGGCTGACCCTCTTCCATGTCAGGAGCTGTGTACCGGAGACGAATCCTGTCCCCAGGGGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS TCA 90 bp | CATTTGTGCCCCTGGGGACAGGATTCGTCTCCGGTACACAGCTCCTaGCATGGAAGAGGGTCAGCCGGACATTCACCTCTCAATGCGTGC | + |
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Preference number: 5 (lower is better) Translates to: HLCPWGQDSSPVHSS*HGRGSAGHSPLNAC Trigger: GCACGCATTGAGAGGTGAATGTCCGGCTGACCCTCTTCCATGTCAGGAGCTGTGTACCGGAGACGAATCCTGTCCCCAGGGGCACAAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS TCA 90 bp | CTGTTGGAGGGGCTGGAGTCCTGGGATGCAGAAGCGGCCGCAGCCTaGCTTACAGCACCTTTCCCCGGATTGACAGTTCTCATCCATCAT | + |
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Preference number: 5 (lower is better) Translates to: LLEGLESWDAEAAAA*LTAPFPGLTVLIHH Trigger: ATGATGGATGAGAACTGTCAATCCGGGGAAAGGTGCTGTAAGTCAGGCTGCGGCCGCTTCTGCATCCCAGGACTCCAGCCCCTCCAACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS GCA 90 bp | CAGCTCCTGACATGGAAGAGGGTCAGCCGGACATTCACCTCTCAATaGGTGCTCTCCTGCAGCTACCCAAGATGCCAGGAACCCAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: QLLTWKRVSRTFTSQ*VLSCSYPRCQEPKS Trigger: GCTCTTGGGTTCCTGGCATCTTGGGTAGCTGCAGGAGAGCACGCATTGAGAGGTGAATGTCCGGCTGACCCTCTTCCATGTCAGGAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS CCA 90 bp | TCTCATCCATCATGCACTGGACAATACACAGGCCTACCAGGATTCTaGGACATTGACCATCCCGCCCTCCCTCGATGTCTCCGCGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: SHPSCTGQYTGLPGF*DIDHPALPRCLRGR Trigger: CCTGCCGCGGAGACATCGAGGGAGGGCGGGATGGTCAATGTCCCAGAATCCTGGTAGGCCTGTGTATTGTCCAGTGCATGATGGATGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS-3UTR CAA 90 bp | TTGGGAAAGAGAAGCGCCCAGCACCAGGGCAGTTCCATGCTACATGCAAGTAGCCCTGTGCTGCAGCATTaGTGCCCCTGGGGACAGGAT | + |
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Preference number: 5 (lower is better) Translates to: LGKRSAQHQGSSMLHASSPVLQH*CPWGQD Trigger: ATCCTGTCCCCAGGGGCACAAATGCTGCAGCACAGG...GCTACTTGCATGTAGCATGGAACTGCCCTGGTGCTGGGCGCTTCTCTTTCCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS CCA 90 bp | TTAAAGCCATCAGTCAGGTTGGAGTCTTTGAGCTGTTGGAGGGGCTaGAGTCCTGGGATGCAGAAGCGGCCGCAGCCTGACTTACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: LKPSVRLESLSCWRG*SPGMQKRPQPDLQH Trigger: GTGCTGTAAGTCAGGCTGCGGCCGCTTCTGCATCCCAGGACTCCAGCCCCTCCAACAGCTCAAAGACTCCAACCTGACTGATGGCTTTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS TCA 90 bp | ATGCAGAAGCGGCCGCAGCCTGACTTACAGCACCTTTCCCCGGATTaGCAGTTCTCATCCATCATGCACTGGACAATACACAGGCCTACC | + |
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Preference number: 5 (lower is better) Translates to: MQKRPQPDLQHLSPD*QFSSIMHWTIHRPT Trigger: GGTAGGCCTGTGTATTGTCCAGTGCATGATGGATGAGAACTGTCAATCCGGGGAAAGGTGCTGTAAGTCAGGCTGCGGCCGCTTCTGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS CCA 90 bp | AGTTTAGAATTAAAGCCATCAGTCAGGTTGGAGTCTTTGAGCTGTTaGAGGGGCTGGAGTCCTGGGATGCAGAAGCGGCCGCAGCCTGAC | + |
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Preference number: 5 (lower is better) Translates to: SLELKPSVRLESLSC*RGWSPGMQKRPQPD Trigger: GTCAGGCTGCGGCCGCTTCTGCATCCCAGGACTCCAGCCCCTCCAACAGCTCAAAGACTCCAACCTGACTGATGGCTTTAATTCTAAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS GCA 90 bp | CTGACTTACAGCACCTTTCCCCGGATTGACAGTTCTCATCCATCATaGACTGGACAATACACAGGCCTACCAGGATTCTGGGACATTGAC | + |
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Preference number: 5 (lower is better) Translates to: LTYSTFPRIDSSHPS*TGQYTGLPGFWDID Trigger: GTCAATGTCCCAGAATCCTGGTAGGCCTGTGTATTGTCCAGTGCATGATGGATGAGAACTGTCAATCCGGGGAAAGGTGCTGTAAGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS CCA 72 bp | CCATCCCGCCCTCCCTCGATGTCTCCGCGGCAGGCATaGCCACACCCTGTGCTGCAGCATTTGTGCCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: PSRPPSMSPRQA*PHPVLQHLCPW Trigger: CCAGGGGCACAAATGCTGCAGCACAGGGTGTGGCCATGCCTGCCGCGGAGACATCGAGGGAGGGCGGGATGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS GCA 72 bp | CGATGTCTCCGCGGCAGGCATGGCCACACCCTGTGCTaGAGCATTTGTGCCCCTGGGGACAGGATTCGTCTC | + |
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Preference number: 6 (lower is better) Translates to: RCLRGRHGHTLC*SICAPGDRIRL Trigger: GAGACGAATCCTGTCCCCAGGGGCACAAATGCTGCAGCACAGGGTGTGGCCATGCCTGCCGCGGAGACATCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS TCA 72 bp | GGGCTGGAGTCCTGGGATGCAGAAGCGGCCGCAGCCTaGCTTACAGCACCTTTCCCCGGATTGACAGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: GLESWDAEAAAA*LTAPFPGLTVL Trigger: GAGAACTGTCAATCCGGGGAAAGGTGCTGTAAGTCAGGCTGCGGCCGCTTCTGCATCCCAGGACTCCAGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS TCA 72 bp | CCCTGGGGACAGGATTCGTCTCCGGTACACAGCTCCTaGCATGGAAGAGGGTCAGCCGGACATTCACCTCTC | + |
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Preference number: 6 (lower is better) Translates to: PWGQDSSPVHSS*HGRGSAGHSPL Trigger: GAGAGGTGAATGTCCGGCTGACCCTCTTCCATGTCAGGAGCTGTGTACCGGAGACGAATCCTGTCCCCAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS GCA 72 bp | GGAAGAGGGTCAGCCGGACATTCACCTCTCAATGCGTaGTCTCCTGCAGCTACCCAAGATGCCAGGAACCCA | + |
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Preference number: 6 (lower is better) Translates to: GRGSAGHSPLNA*SPAATQDARNP Trigger: TGGGTTCCTGGCATCTTGGGTAGCTGCAGGAGAGCACGCATTGAGAGGTGAATGTCCGGCTGACCCTCTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS CCA 72 bp | TTAAAGCCATCAGTCAGGTTGGAGTCTTTGAGCTGTTaGAGGGGCTGGAGTCCTGGGATGCAGAAGCGGCCG | + |
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Preference number: 6 (lower is better) Translates to: LKPSVRLESLSC*RGWSPGMQKRP Trigger: CGGCCGCTTCTGCATCCCAGGACTCCAGCCCCTCCAACAGCTCAAAGACTCCAACCTGACTGATGGCTTTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS CCA 72 bp | GGGACAGGATTCGTCTCCGGTACACAGCTCCTGACATaGAAGAGGGTCAGCCGGACATTCACCTCTCAATGC | + |
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Preference number: 6 (lower is better) Translates to: GTGFVSGTQLLT*KRVSRTFTSQC Trigger: GCATTGAGAGGTGAATGTCCGGCTGACCCTCTTCCATGTCAGGAGCTGTGTACCGGAGACGAATCCTGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS GCA 72 bp | ACATGGAAGAGGGTCAGCCGGACATTCACCTCTCAATaGGTGCTCTCCTGCAGCTACCCAAGATGCCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: TWKRVSRTFTSQ*VLSCSYPRCQE Trigger: TTCCTGGCATCTTGGGTAGCTGCAGGAGAGCACGCATTGAGAGGTGAATGTCCGGCTGACCCTCTTCCATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS CCA 72 bp | TCATGCACTGGACAATACACAGGCCTACCAGGATTCTaGGACATTGACCATCCCGCCCTCCCTCGATGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SCTGQYTGLPGF*DIDHPALPRCL Trigger: GAGACATCGAGGGAGGGCGGGATGGTCAATGTCCCAGAATCCTGGTAGGCCTGTGTATTGTCCAGTGCATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS CAA 72 bp | ATTAAAGCCATCAGTCAGGTTGGAGTCTTTGAGCTGTaGGAGGGGCTGGAGTCCTGGGATGCAGAAGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: IKAISQVGVFEL*EGLESWDAEAA Trigger: GGCCGCTTCTGCATCCCAGGACTCCAGCCCCTCCAACAGCTCAAAGACTCCAACCTGACTGATGGCTTTAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103096.10 ENSMUST00000109328.8 |
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| CDS TCA 72 bp | CGGCCGCAGCCTGACTTACAGCACCTTTCCCCGGATTaGCAGTTCTCATCCATCATGCACTGGACAATACAC | + |
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Preference number: 6 (lower is better) Translates to: RPQPDLQHLSPD*QFSSIMHWTIH Trigger: GTGTATTGTCCAGTGCATGATGGATGAGAACTGTCAATCCGGGGAAAGGTGCTGTAAGTCAGGCTGCGGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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| CDS GCA 72 bp | AGCACCTTTCCCCGGATTGACAGTTCTCATCCATCATaGACTGGACAATACACAGGCCTACCAGGATTCTGG | + |
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Preference number: 6 (lower is better) Translates to: STFPRIDSSHPS*TGQYTGLPGFW Trigger: CCAGAATCCTGGTAGGCCTGTGTATTGTCCAGTGCATGATGGATGAGAACTGTCAATCCGGGGAAAGGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103096.10 |
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