Pregenerated sensors for WFDC21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051748Ensembl transcript IDs: ENSMUST00000070832.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAACTCCTTGTCCCACTCCACTGTGCTGCTTGTAATCTCCATACATaGCCTCCATTTTCAACTGTTTTCTTGGTCACAGAGCTCCAAACA | + |
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Preference number: 1 (lower is better) Translates to: QLLVPLHCAACNLHT*PPFSTVFLVTELQT Trigger: TGTTTGGAGCTCTGTGACCAAGAAAACAGTTGAAAATGGAGGCCATGTATGGAGATTACAAGCAGCACAGTGGAGTGGGACAAGGAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS-3UTR GCA 90 bp | TCCCACTCCACTGTGCTGCTTGTAATCTCCATACATGGCCTCCATTTTCAACTGGGTCTCACTGCAGCCTaGAGCTCCTGTACCTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: SHSTVLLVISIHGLHFQLGLTAA*SSCTSR Trigger: CCTAGAGGTACAGGAGCTGCAGGCTGCAGTGAGACC...CAGTTGAAAATGGAGGCCATGTATGGAGATTACAAGCAGCACAGTGGAGTGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS-3UTR GCA 90 bp | TACATGGCCTCCATTTTCAACTGTTTTCTTGGTCACAGAGCTCCAAACAGACACCTGCAGAGGTCTCACTaGAGCCTGCAGCTCCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: YMASIFNCFLGHRAPNRHLQRSH*SLQLLY Trigger: GTACAGGAGCTGCAGGCTGCAGTGAGACCTCTGCAG...GTGTCTGTTTGGAGCTCTGTGACCAAGAAAACAGTTGAAAATGGAGGCCATGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS-3UTR GCA 90 bp | TCCCACTCCACTGTGCTGCTTGTAATCTCCATACATGGCCTCCATTTTCAACTGAGAGCTCAGCACAGGTaGCTAAAAGCTGCAGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: SHSTVLLVISIHGLHFQLRAQHR*LKAAEV Trigger: GACCTCTGCAGCTTTTAGGCACCTGTGCTGAGCTCT...CAGTTGAAAATGGAGGCCATGTATGGAGATTACAAGCAGCACAGTGGAGTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS-3UTR CCA 90 bp | TTGTCCCACTCCACTGTGCTGCTTGTAATCTCCATACATGGCCTCCATTTTCAAGACACATTGTTCCTCTaGCCCACAGTCCCAGTCACC | + |
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Preference number: 4 (lower is better) Translates to: LSHSTVLLVISIHGLHFQDTLFL*PTVPVT Trigger: GGTGACTGGGACTGTGGGCCAGAGGAACAATGTGTC...TTGAAAATGGAGGCCATGTATGGAGATTACAAGCAGCACAGTGGAGTGGGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS-3UTR GCA 90 bp | TACATGGCCTCCATTTTCAACTGTTTTCTTGGTCACAGAGCTCCAAACAGACACCAGGTGCCTAAAAGCTaGAGAGGTCTCACTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: YMASIFNCFLGHRAPNRHQVPKS*RGLTAA Trigger: GGCTGCAGTGAGACCTCTGCAGCTTTTAGGCACCTG...GTGTCTGTTTGGAGCTCTGTGACCAAGAAAACAGTTGAAAATGGAGGCCATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS GCA 90 bp | CCTCTGGCCCACAGTCCCAGTCACCACGGCAGAGCTCAGCACAGGTaGCTAAAAGCTGCAGAGGTCTCACTGCAGCCTGCAGCTCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: PLAHSPSHHGRAQHR*LKAAEVSLQPAAPV Trigger: TACAGGAGCTGCAGGCTGCAGTGAGACCTCTGCAGCTTTTAGGCACCTGTGCTGAGCTCTGCCGTGGTGACTGGGACTGTGGGCCAGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS CCA 90 bp | TGTAGTACAGATGTGACTGCATCCAATACTGACACATTGTTCCTCTaGCCCACAGTCCCAGTCACCACGGCAGAGCTCAGCACAGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: CSTDVTASNTDTLFL*PTVPVTTAELSTGA Trigger: GGCACCTGTGCTGAGCTCTGCCGTGGTGACTGGGACTGTGGGCCAGAGGAACAATGTGTCAGTATTGGATGCAGTCACATCTGTACTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS-3UTR CAA 90 bp | TACATGGCCTCCATTTTCAACTGTTTTCTTGGTCACAGAGCTCCAAACAGACACTCCAATACTGACACATaGTTCCTCTGGCCCACAGTC | + |
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Preference number: 5 (lower is better) Translates to: YMASIFNCFLGHRAPNRHSNTDT*FLWPTV Trigger: GACTGTGGGCCAGAGGAACAATGTGTCAGTATTGGA...GTGTCTGTTTGGAGCTCTGTGACCAAGAAAACAGTTGAAAATGGAGGCCATGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS GCA 72 bp | TCACCACGGCAGAGCTCAGCACAGGTGCCTAAAAGCTaGAGAGGTCTCACTGCAGCCTGCAGCTCCTGTACC | + |
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Preference number: 6 (lower is better) Translates to: SPRQSSAQVPKS*RGLTAACSSCT Trigger: GGTACAGGAGCTGCAGGCTGCAGTGAGACCTCTGCAGCTTTTAGGCACCTGTGCTGAGCTCTGCCGTGGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS GCA 72 bp | CAGGTGCCTAAAAGCTGCAGAGGTCTCACTGCAGCCTaGAGCTCCTGTACCTCTAGGCTGAGGGTGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: QVPKSCRGLTAA*SSCTSRLRVMR Trigger: CCTCATCACCCTCAGCCTAGAGGTACAGGAGCTGCAGGCTGCAGTGAGACCTCTGCAGCTTTTAGGCACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS CCA 72 bp | GATGTGACTGCATCCAATACTGACACATTGTTCCTCTaGCCCACAGTCCCAGTCACCACGGCAGAGCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: DVTASNTDTLFL*PTVPVTTAELS Trigger: GCTGAGCTCTGCCGTGGTGACTGGGACTGTGGGCCAGAGGAACAATGTGTCAGTATTGGATGCAGTCACATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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| CDS CAA 72 bp | TGTAGTACAGATGTGACTGCATCCAATACTGACACATaGTTCCTCTGGCCCACAGTCCCAGTCACCACGGCA | + |
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Preference number: 6 (lower is better) Translates to: CSTDVTASNTDT*FLWPTVPVTTA Trigger: TGCCGTGGTGACTGGGACTGTGGGCCAGAGGAACAATGTGTCAGTATTGGATGCAGTCACATCTGTACTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070832.3 |
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