RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WFDC18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000983

Ensembl transcript IDs: ENSMUST00000001009.14, ENSMUST00000135654.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GGGCTAGCCATCAGTCCTGCTTATAAAGATCCATCTTCCACATGGATCCTTCCCCCCTGCTTTCCACCATaGAAGTCATGGACTCACTCT +
Preference number: 2 (lower is better)
Translates to: GLAISPAYKDPSSTWILPPCFPP*KSWTHS
Trigger: AGAGTGAGTCCATGACTTTCATGGTGGAAAGCAGGG...GGGAAGGATCCATGTGGAAGATGGATCTTTATAAGCAGGACTGATGGCTAGCCC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
3UTR-3UTR GCA 90 bp GGGCTAGCCATCAGTCCTGCTTATAAAGATCCATCTTCCACATGGATCCTTCCCTGCATACCTGTCTGCTaGCCTGCTTTCCACCATGAA +
Preference number: 2 (lower is better)
Translates to: GLAISPAYKDPSSTWILPCIPVC*PAFHHE
Trigger: TTCATGGTGGAAAGCAGGGCAGCAGACAGGTATGCA...GGGAAGGATCCATGTGGAAGATGGATCTTTATAAGCAGGACTGATGGCTAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
3UTR-3UTR GCA 90 bp AATCTTCTGGGGCTAGCCATCAGTCCTGCTTATAAAGATCCATCTTCCACATGGTTCCTCTTCCAAGGATaGAATTCTAGGTCTAAGGAG +
Preference number: 2 (lower is better)
Translates to: NLLGLAISPAYKDPSSTWFLFQG*NSRSKE
Trigger: CTCCTTAGACCTAGAATTGCATCCTTGGAAGAGGAA...CCATGTGGAAGATGGATCTTTATAAGCAGGACTGATGGCTAGCCCCAGAAGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
3UTR GCA 72 bp CCTGCCATCAATGCTCCAGTCCCGTGCATACCTGTCTaGTGCCCTGCTTTCCACCATGAAAGTCATGGACTC +
Preference number: 3 (lower is better)
Translates to: PAINAPVPCIPV*CPAFHHESHGL
Trigger: GAGTCCATGACTTTCATGGTGGAAAGCAGGGCAGCAGACAGGTATGCACGGGACTGGAGCATTGATGGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
3UTR GCA 72 bp GCCATCAATGCTCCAGTCCCGTGCATACCTGTCTGCTaGCCTGCTTTCCACCATGAAAGTCATGGACTCACT +
Preference number: 3 (lower is better)
Translates to: AINAPVPCIPVC*PAFHHESHGLT
Trigger: AGTGAGTCCATGACTTTCATGGTGGAAAGCAGGGCAGCAGACAGGTATGCACGGGACTGGAGCATTGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
3UTR TCA 72 bp TCCCAGTTATCTCACTCTCTTCCTCAGGATTGCTTCTaGAGATGTAAGCCTGCCATCAATGCTCCAGTCCCG +
Preference number: 3 (lower is better)
Translates to: SQLSHSLPQDCF*RCKPAINAPVP
Trigger: CGGGACTGGAGCATTGATGGCAGGCTTACATCTTCAGAAGCAATCCTGAGGAAGAGAGTGAGATAACTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
3UTR CCA 72 bp GCCATCAGTCCTGCTTATAAAGATCCATCTTCCACATaGATCCTTCCCAGTTATCTCACTCTCTTCCTCAGG +
Preference number: 3 (lower is better)
Translates to: AISPAYKDPSST*ILPSYLTLFLR
Trigger: CCTGAGGAAGAGAGTGAGATAACTGGGAAGGATCCATGTGGAAGATGGATCTTTATAAGCAGGACTGATGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
CDS-3UTR GCA 90 bp AATGCTCCAGTCCCGTGCATACCTGTCTGCTGCCCTGCTTTCCACCATGAAAGTGACCACAGCCATTGCTaGAGCACTTCATGTTGCCAG +
Preference number: 4 (lower is better)
Translates to: NAPVPCIPVCCPAFHHESDHSHC*STSCCQ
Trigger: CTGGCAACATGAAGTGCTGCAGCAATGGCTGTGGTC...ACTTTCATGGTGGAAAGCAGGGCAGCAGACAGGTATGCACGGGACTGGAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
CDS-3UTR GCA 90 bp ATGCTCCAGTCCCGTGCATACCTGTCTGCTGCCCTGCTTTCCACCATGAAAGTCACGATCCATCTCCTGTaGATCGTTCATCACAAGTTC +
Preference number: 4 (lower is better)
Translates to: MLQSRAYLSAALLSTMKVTIHLL*IVHHKF
Trigger: GAACTTGTGATGAACGATGCACAGGAGATGGATCGT...GACTTTCATGGTGGAAAGCAGGGCAGCAGACAGGTATGCACGGGACTGGAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
CDS-3UTR GCA 90 bp CAAGGATGCAATTCTAGGTCTAAGGAGGAGCCAAGCATGGGGTCTGTAGGTTCAGACCACAGCCATTGCTaGAGCACTTCATGTTGCCAG +
Preference number: 4 (lower is better)
Translates to: QGCNSRSKEEPSMGSVGSDHSHC*STSCCQ
Trigger: CTGGCAACATGAAGTGCTGCAGCAATGGCTGTGGTC...TGAACCTACAGACCCCATGCTTGGCTCCTCCTTAGACCTAGAATTGCATCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
CDS-3UTR GCA 90 bp TTCCAAGGATGCAATTCTAGGTCTAAGGAGGAGCCAAGCATGGGGTCTGTAGGTCATGACCACAGCCATTaGTGCAGCACTTCATGTTGC +
Preference number: 4 (lower is better)
Translates to: FQGCNSRSKEEPSMGSVGHDHSH*CSTSCC
Trigger: GCAACATGAAGTGCTGCAGCAATGGCTGTGGTCATG...ACCTACAGACCCCATGCTTGGCTCCTCCTTAGACCTAGAATTGCATCCTTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
CDS-3UTR TCA 90 bp CTTATAAAGATCCATCTTCCACATGGATCCTTCCCAGTTATCTCACTCTCTTCCGGAGGTTTGCAGGCATaGCCACAGCCATTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: LIKIHLPHGSFPVISLSSGGLQA*PQPLLQ
Trigger: CTGCAGCAATGGCTGTGGTCATGCCTGCAAACCTCC...GGAAGAGAGTGAGATAACTGGGAAGGATCCATGTGGAAGATGGATCTTTATAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135654.2
CDS-3UTR GCA 90 bp CAAGGATGCAATTCTAGGTCTAAGGAGGAGCCAAGCATGGGGTCTGTAGGTTCAACGATCCATCTCCTGTaGATCGTTCATCACAAGTTC +
Preference number: 4 (lower is better)
Translates to: QGCNSRSKEEPSMGSVGSTIHLL*IVHHKF
Trigger: GAACTTGTGATGAACGATGCACAGGAGATGGATCGT...TGAACCTACAGACCCCATGCTTGGCTCCTCCTTAGACCTAGAATTGCATCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
CDS-3UTR TCA 90 bp ATGCTAAGGATAGTTTATTTTAGACACAAACACGTTAGGAAGCTGTCACCACAGGGAGGTTTGCAGGCATaGCCACAGCCATTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: MLRIVYFRHKHVRKLSPQGGLQA*PQPLLQ
Trigger: CTGCAGCAATGGCTGTGGTCATGCCTGCAAACCTCC...CTGTGGTGACAGCTTCCTAACGTGTTTGTGTCTAAAATAAACTATCCTTAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
CDS GCA 72 bp AGACAGGAGGTTTGCAGGCATGACCACAGCCATTGCTaGAGCACTTCATGTTGCCAGAGCACGATCCATCTC +
Preference number: 6 (lower is better)
Translates to: RQEVCRHDHSHC*STSCCQSTIHL
Trigger: GAGATGGATCGTGCTCTGGCAACATGAAGTGCTGCAGCAATGGCTGTGGTCATGCCTGCAAACCTCCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
CDS GCA 72 bp AGGCATGACCACAGCCATTGCTGCAGCACTTCATGTTaGCAGAGCACGATCCATCTCCTGTGCATCGTTCAT +
Preference number: 6 (lower is better)
Translates to: RHDHSHCCSTSC*QSTIHLLCIVH
Trigger: ATGAACGATGCACAGGAGATGGATCGTGCTCTGGCAACATGAAGTGCTGCAGCAATGGCTGTGGTCATGCCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
CDS GCA 72 bp AGCACTTCATGTTGCCAGAGCACGATCCATCTCCTGTaGATCGTTCATCACAAGTTCCAAAACTGCGTGGGG +
Preference number: 6 (lower is better)
Translates to: STSCCQSTIHLL*IVHHKFQNCVG
Trigger: CCCCACGCAGTTTTGGAACTTGTGATGAACGATGCACAGGAGATGGATCGTGCTCTGGCAACATGAAGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2
CDS GCA 72 bp AAAAGACAGGAGGTTTGCAGGCATGACCACAGCCATTaGTGCAGCACTTCATGTTGCCAGAGCACGATCCAT +
Preference number: 6 (lower is better)
Translates to: KRQEVCRHDHSH*CSTSCCQSTIH
Trigger: ATGGATCGTGCTCTGGCAACATGAAGTGCTGCAGCAATGGCTGTGGTCATGCCTGCAAACCTCCTGTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000001009.14
ENSMUST00000135654.2