Pregenerated sensors for WFDC17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069792Ensembl transcript IDs: ENSMUST00000092836.6
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | GTTTATTTTGGACACAGACATATTAGGGCATTGTCACCACAATATAGATCTTCCTCCAACACTTTCTGGTaGAGGCTTGGGACAAGCTCC | + |
Preference number: 4 (lower is better) Translates to: VYFGHRHIRALSPQYRSSSNTFW*RLGTSS Trigger: GGAGCTTGTCCCAAGCCTTCACCAGAAAGTGTTGGA...GGAAGATCTATATTGTGGTGACAATGCCCTAATATGTCTGTGTCCAAAATAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS-3UTR TCA 90 bp | TGGCCATCATTCATGTTTATGAAGATTGAATCCATCTTCCACATGGCTGTCAACGGAGTTTTGCAGACATaGCCACAGCTATTGCTACAG | + |
Preference number: 4 (lower is better) Translates to: WPSFMFMKIESIFHMAVNGVLQT*PQLLLQ Trigger: CTGTAGCAATAGCTGTGGTCATGTCTGCAAAACTCC...GTTGACAGCCATGTGGAAGATGGATTCAATCTTCATAAACATGAATGATGGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS-3UTR GCA 90 bp | AGATCTTCCTTGTCCAAGAATGCAATTCTAGGGCTAGGAAGTAGCCAAGCACAGAAAAGACAGGAGTTTTaGAGACATGACCACAGCTAT | + |
Preference number: 4 (lower is better) Translates to: RSSLSKNAILGLGSSQAQKRQEF*RHDHSY Trigger: ATAGCTGTGGTCATGTCTGCAAAACTCCTGTCTTTT...CTGTGCTTGGCTACTTCCTAGCCCTAGAATTGCATTCTTGGACAAGGAAGATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS-3UTR TCA 90 bp | TATAGATCTTCCTTGTCCAAGAATGCAATTCTAGGGCTAGGAAGTAGCCAAGCACCATCTCCTGAGCATTaGTCAACACAAATTCCAACA | + |
Preference number: 4 (lower is better) Translates to: YRSSLSKNAILGLGSSQAPSPEH*STQIPT Trigger: TGTTGGAATTTGTGTTGATCAATGCTCAGGAGATGG...TGCTTGGCTACTTCCTAGCCCTAGAATTGCATTCTTGGACAAGGAAGATCTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS-3UTR CCA 90 bp | CTCTGTGAATTCAGAAGAAATCTTCTGGGGCTGGCCATCATTCATGTTTATGAATTTCTGGTGAAGGCTTaGGACAAGCTCCAGGTTTTT | + |
Preference number: 4 (lower is better) Translates to: LCEFRRNLLGLAIIHVYEFLVKA*DKLQVF Trigger: AAAAACCTGGAGCTTGTCCCAAGCCTTCACCAGAAA...TTCATAAACATGAATGATGGCCAGCCCCAGAAGATTTCTTCTGAATTCACAGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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3UTR CAA 72 bp | CATATTAGGGCATTGTCACCACAATATAGATCTTCCTaGTCCAAGAATGCAATTCTAGGGCTAGGAAGTAGC | + |
Preference number: 4 (lower is better) Translates to: HIRALSPQYRSS*SKNAILGLGSS Trigger: GCTACTTCCTAGCCCTAGAATTGCATTCTTGGACAAGGAAGATCTATATTGTGGTGACAATGCCCTAATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS-3UTR CCA 90 bp | TATAGATCTTCCTTGTCCAAGAATGCAATTCTAGGGCTAGGAAGTAGCCAAGCAGTTTTTCAAATTCTTTaGGGCAAGACACTACATAGG | + |
Preference number: 4 (lower is better) Translates to: YRSSLSKNAILGLGSSQAVFQIL*GKTLHR Trigger: CCTATGTAGTGTCTTGCCCCAAAGAATTTGAAAAAC...TGCTTGGCTACTTCCTAGCCCTAGAATTGCATTCTTGGACAAGGAAGATCTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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3UTR CAA 72 bp | AGGGTAGTTTATTTTGGACACAGACATATTAGGGCATaGTCACCACAATATAGATCTTCCTTGTCCAAGAAT | + |
Preference number: 4 (lower is better) Translates to: RVVYFGHRHIRA*SPQYRSSLSKN Trigger: ATTCTTGGACAAGGAAGATCTATATTGTGGTGACAATGCCCTAATATGTCTGTGTCCAAAATAAACTACCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS TCA 90 bp | CTACAGCACTTCATGTTGCCAGGGCAGGATCCATCTCCTGAGCATTaGTCAACACAAATTCCAACACTTTCTGGTGAAGGCTTGGGACAA | + |
Preference number: 5 (lower is better) Translates to: LQHFMLPGQDPSPEH*STQIPTLSGEGLGQ Trigger: TTGTCCCAAGCCTTCACCAGAAAGTGTTGGAATTTGTGTTGATCAATGCTCAGGAGATGGATCCTGCCCTGGCAACATGAAGTGCTGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS-3UTR CAA 90 bp | AGATCTTCCTTGTCCAAGAATGCAATTCTAGGGCTAGGAAGTAGCCAAGCACAGCTTTCTGGTGAAGGCTaGGGACAAGCTCCAGGTTTT | + |
Preference number: 5 (lower is better) Translates to: RSSLSKNAILGLGSSQAQLSGEG*GQAPGF Trigger: AAAACCTGGAGCTTGTCCCAAGCCTTCACCAGAAAG...CTGTGCTTGGCTACTTCCTAGCCCTAGAATTGCATTCTTGGACAAGGAAGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS GCA 90 bp | GAGTTTTGCAGACATGACCACAGCTATTGCTACAGCACTTCATGTTaGCAGGGCAGGATCCATCTCCTGAGCATTGATCAACACAAATTC | + |
Preference number: 5 (lower is better) Translates to: EFCRHDHSYCYSTSC*QGRIHLLSIDQHKF Trigger: GAATTTGTGTTGATCAATGCTCAGGAGATGGATCCTGCCCTGGCAACATGAAGTGCTGTAGCAATAGCTGTGGTCATGTCTGCAAAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS GCA 72 bp | AGACATGACCACAGCTATTGCTACAGCACTTCATGTTaGCAGGGCAGGATCCATCTCCTGAGCATTGATCAA | + |
Preference number: 6 (lower is better) Translates to: RHDHSYCYSTSC*QGRIHLLSIDQ Trigger: TTGATCAATGCTCAGGAGATGGATCCTGCCCTGGCAACATGAAGTGCTGTAGCAATAGCTGTGGTCATGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS GCA 72 bp | AAAAGACAGGAGTTTTGCAGACATGACCACAGCTATTaGTACAGCACTTCATGTTGCCAGGGCAGGATCCAT | + |
Preference number: 6 (lower is better) Translates to: KRQEFCRHDHSY*YSTSCCQGRIH Trigger: ATGGATCCTGCCCTGGCAACATGAAGTGCTGTAGCAATAGCTGTGGTCATGTCTGCAAAACTCCTGTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |
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CDS CCA 72 bp | GATCAACACAAATTCCAACACTTTCTGGTGAAGGCTTaGGACAAGCTCCAGGTTTTTCAAATTCTTTGGGGC | + |
Preference number: 6 (lower is better) Translates to: DQHKFQHFLVKA*DKLQVFQILWG Trigger: GCCCCAAAGAATTTGAAAAACCTGGAGCTTGTCCCAAGCCTTCACCAGAAAGTGTTGGAATTTGTGTTGATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092836.6 |