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Pregenerated sensors for WFDC16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070530

Ensembl transcript IDs: ENSMUST00000109336.2

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp AGACATTGTCTGGGCACCCTCACCCCTACCCACACCTaGTTCAAGAGGACGGTCCAACAGGAGGTTGGTCTT +
Preference number: 3 (lower is better)
Translates to: RHCLGTLTPTHT*FKRTVQQEVGL
Trigger: AAGACCAACCTCCTGTTGGACCGTCCTCTTGAATCAGGTGTGGGTAGGGGTGAGGGTGCCCAGACAATGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
3UTR CCA 72 bp CCACACCTGATTCAAGAGGACGGTCCAACAGGAGGTTaGTCTTCCAACACTTTCCGAGTGGCTTGTAACGAT +
Preference number: 3 (lower is better)
Translates to: PHLIQEDGPTGG*SSNTFRVACND
Trigger: ATCGTTACAAGCCACTCGGAAAGTGTTGGAAGACCAACCTCCTGTTGGACCGTCCTCTTGAATCAGGTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
3UTR-3UTR CAA 90 bp TTCTCCTCATTATGTCATGTCAATAAGCAGAGACAAATAGGTCTAGGAGTCTGGCGGTCCAACAGGAGGTaGGTCTTCCAACACTTTCCG +
Preference number: 3 (lower is better)
Translates to: FSSLCHVNKQRQIGLGVWRSNRR*VFQHFP
Trigger: CGGAAAGTGTTGGAAGACCAACCTCCTGTTGGACCG...CCAGACTCCTAGACCTATTTGTCTCTGCTTATTGACATGACATAATGAGGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR GCA 90 bp GTAGGCAGGGAAGACATTGTCTGGGCACCCTCACCCCTACCCACACCTGATTCAAGCTTGTGCACTGGGTaGTGGTCGGCCGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: VGREDIVWAPSPLPTPDSSLCTG*WSAASG
Trigger: GCCTGACGCGGCCGACCAGCACCCAGTGCACAAGCT...TGAATCAGGTGTGGGTAGGGGTGAGGGTGCCCAGACAATGTCTTCCCTGCCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR GCA 90 bp AGGGAAGACATTGTCTGGGCACCCTCACCCCTACCCACACCTGATTCAAGAGGAGACTCATGCAGACGTTaGCGCAGAAGGAGCGGCAGC +
Preference number: 4 (lower is better)
Translates to: REDIVWAPSPLPTPDSRGDSCRR*RRRSGS
Trigger: GCTGCCGCTCCTTCTGCGGCAACGTCTGCATGAGTC...TCCTCTTGAATCAGGTGTGGGTAGGGGTGAGGGTGCCCAGACAATGTCTTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR CCA 90 bp GCTTATGGGGAAGGAGGTAGGCAGGGAAGACATTGTCTGGGCACCCTCACCCCTGAGTTCCTGATTGTATaGTTTGGCTTTGCGCCCTCC +
Preference number: 4 (lower is better)
Translates to: AYGEGGRQGRHCLGTLTPEFLIV*FGFAPS
Trigger: GGAGGGCGCAAAGCCAAACCATACAATCAGGAACTC...AGGGGTGAGGGTGCCCAGACAATGTCTTCCCTGCCTACCTCCTTCCCCATAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR TCA 90 bp TTCTCCTCATTATGTCATGTCAATAAGCAGAGACAAATAGGTCTAGGAGTCTGGAAGGAGCGGCAGCAGTaGAAGTCCTGCTCACAGTCC +
Preference number: 4 (lower is better)
Translates to: FSSLCHVNKQRQIGLGVWKERQQ*KSCSQS
Trigger: GGACTGTGAGCAGGACTTTCACTGCTGCCGCTCCTT...CCAGACTCCTAGACCTATTTGTCTCTGCTTATTGACATGACATAATGAGGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR GCA 90 bp AATCCTAGTGACAAGCAGGTGATGTTTAAGAGGAGAGCTTATTTAGAGCAAGCATGTATGGTTTGGCTTTaGGCCCTCCGCCTCTTCCGG +
Preference number: 4 (lower is better)
Translates to: NPSDKQVMFKRRAYLEQACMVWL*ALRLFR
Trigger: CCGGAAGAGGCGGAGGGCGCAAAGCCAAACCATACA...TGCTTGCTCTAAATAAGCTCTCCTCTTAAACATCACCTGCTTGTCACTAGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR CCA 90 bp GACAAGCAGGTGATGTTTAAGAGGAGAGCTTATTTAGAGCAAGCAATGCCTTCTCCTGATTGTATGGTTTaGCTTTGCGCCCTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: DKQVMFKRRAYLEQAMPSPDCMV*LCALRL
Trigger: GAGGCGGAGGGCGCAAAGCCAAACCATACAATCAGG...AGAAGGCATTGCTTGCTCTAAATAAGCTCTCCTCTTAAACATCACCTGCTTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
3UTR CAA 72 bp CCCAGGCACGGTGAATTCAAAGTAACAGTATCCTCGTaGGCCAAAAAGAATGCTTCCCCCATCCCATATAAG +
Preference number: 4 (lower is better)
Translates to: PRHGEFKVTVSS*AKKNASPIPYK
Trigger: CTTATATGGGATGGGGGAAGCATTCTTTTTGGCCAACGAGGATACTGTTACTTTGAATTCACCGTGCCTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR GCA 90 bp GACAAGCAGGTGATGTTTAAGAGGAGAGCTTATTTAGAGCAAGCAATGCCTTCTATCTGGAGAGTGACTTaGCACTTCATGAGGCCAACC +
Preference number: 4 (lower is better)
Translates to: DKQVMFKRRAYLEQAMPSIWRVT*HFMRPT
Trigger: GGTTGGCCTCATGAAGTGGCAAGTCACTCTCCAGAT...AGAAGGCATTGCTTGCTCTAAATAAGCTCTCCTCTTAAACATCACCTGCTTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS GCA 90 bp GGTTTGGCTTTGCGCCCTCCGCCTCTTCCGGACTCATGCAGACGTTaGCGCAGAAGGAGCGGCAGCAGTGAAAGTCCTGCTCACAGTCCA +
Preference number: 5 (lower is better)
Translates to: GLALRPPPLPDSCRR*RRRSGSSESPAHSP
Trigger: TGGACTGTGAGCAGGACTTTCACTGCTGCCGCTCCTTCTGCGGCAACGTCTGCATGAGTCCGGAAGAGGCGGAGGGCGCAAAGCCAAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR CAA 90 bp GACATTGTCTGGGCACCCTCACCCCTACCCACACCTGATTCAAGAGGACGGTCCGAGCCCTGCAGTAGCTaGTGCACTGGGTGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: DIVWAPSPLPTPDSRGRSEPCSS*CTGCWS
Trigger: CGACCAGCACCCAGTGCACAAGCTACTGCAGGGCTC...GGACCGTCCTCTTGAATCAGGTGTGGGTAGGGGTGAGGGTGCCCAGACAATGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR CAA 90 bp GAAGGAGGTAGGCAGGGAAGACATTGTCTGGGCACCCTCACCCCTACCCACACCCATCTGGAGAGTGACTaGCCACTTCATGAGGCCAAC +
Preference number: 5 (lower is better)
Translates to: EGGRQGRHCLGTLTPTHTHLESD*PLHEAN
Trigger: GTTGGCCTCATGAAGTGGCAAGTCACTCTCCAGATG...GGTGTGGGTAGGGGTGAGGGTGCCCAGACAATGTCTTCCCTGCCTACCTCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR CAA 90 bp GAAGGAGGTAGGCAGGGAAGACATTGTCTGGGCACCCTCACCCCTACCCACACCATCTGTCCTTCCATCTaGCCAACACTGGCAGGCCTA +
Preference number: 5 (lower is better)
Translates to: EGGRQGRHCLGTLTPTHTICPSI*PTLAGL
Trigger: TAGGCCTGCCAGTGTTGGCAAGATGGAAGGACAGAT...GGTGTGGGTAGGGGTGAGGGTGCCCAGACAATGTCTTCCCTGCCTACCTCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR CAA 90 bp CCTAGTGACAAGCAGGTGATGTTTAAGAGGAGAGCTTATTTAGAGCAAGCAATGGGACTCATGCAGACGTaGCCGCAGAAGGAGCGGCAG +
Preference number: 5 (lower is better)
Translates to: PSDKQVMFKRRAYLEQAMGLMQT*PQKERQ
Trigger: CTGCCGCTCCTTCTGCGGCAACGTCTGCATGAGTCC...CATTGCTTGCTCTAAATAAGCTCTCCTCTTAAACATCACCTGCTTGTCACTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS-3UTR CAA 90 bp AGGGAAGACATTGTCTGGGCACCCTCACCCCTACCCACACCTGATTCAAGAGGAGGGGCAGTTTGGGCCTaGTTAAAATGTAATCTTGAA +
Preference number: 5 (lower is better)
Translates to: REDIVWAPSPLPTPDSRGGAVWA*LKCNLE
Trigger: TTCAAGATTACATTTTAACAAGGCCCAAACTGCCCC...TCCTCTTGAATCAGGTGTGGGTAGGGGTGAGGGTGCCCAGACAATGTCTTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS CAA 72 bp AGTCCTGCTCACAGTCCAGGTGAGCCCTGCAGTAGCTaGTGCACTGGGTGCTGGTCGGCCGCGTCAGGCAGG +
Preference number: 6 (lower is better)
Translates to: SPAHSPGEPCSS*CTGCWSAASGR
Trigger: CCTGCCTGACGCGGCCGACCAGCACCCAGTGCACAAGCTACTGCAGGGCTCACCTGGACTGTGAGCAGGACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS GCA 72 bp AGCAGTGAAAGTCCTGCTCACAGTCCAGGTGAGCCCTaGAGTAGCTTGTGCACTGGGTGCTGGTCGGCCGCG +
Preference number: 6 (lower is better)
Translates to: SSESPAHSPGEP*SSLCTGCWSAA
Trigger: CGCGGCCGACCAGCACCCAGTGCACAAGCTACTGCAGGGCTCACCTGGACTGTGAGCAGGACTTTCACTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS GCA 72 bp GGTTTGGCTTTGCGCCCTCCGCCTCTTCCGGACTCATaGAGACGTTGCCGCAGAAGGAGCGGCAGCAGTGAA +
Preference number: 6 (lower is better)
Translates to: GLALRPPPLPDS*RRCRRRSGSSE
Trigger: TTCACTGCTGCCGCTCCTTCTGCGGCAACGTCTGCATGAGTCCGGAAGAGGCGGAGGGCGCAAAGCCAAACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS GCA 72 bp TGTGCTCACCGAGTTCCTGATTGTATGGTTTGGCTTTaGGCCCTCCGCCTCTTCCGGACTCATGCAGACGTT +
Preference number: 6 (lower is better)
Translates to: CAHRVPDCMVWL*ALRLFRTHADV
Trigger: AACGTCTGCATGAGTCCGGAAGAGGCGGAGGGCGCAAAGCCAAACCATACAATCAGGAACTCGGTGAGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS CCA 72 bp ACTGGCAGGCCTAACGTGCCAAGGAGTAATAGCATCTaGAGAGTGACTTGCCACTTCATGAGGCCAACCGGG +
Preference number: 6 (lower is better)
Translates to: TGRPNVPRSNSI*RVTCHFMRPTG
Trigger: CCCGGTTGGCCTCATGAAGTGGCAAGTCACTCTCCAGATGCTATTACTCCTTGGCACGTTAGGCCTGCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS CCA 72 bp TACAACTGTGCTCACCGAGTTCCTGATTGTATGGTTTaGCTTTGCGCCCTCCGCCTCTTCCGGACTCATGCA +
Preference number: 6 (lower is better)
Translates to: YNCAHRVPDCMV*LCALRLFRTHA
Trigger: TGCATGAGTCCGGAAGAGGCGGAGGGCGCAAAGCCAAACCATACAATCAGGAACTCGGTGAGCACAGTTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2
CDS CCA 72 bp TATGGTACAACTGTGCTCACCGAGTTCCTGATTGTATaGTTTGGCTTTGCGCCCTCCGCCTCTTCCGGACTC +
Preference number: 6 (lower is better)
Translates to: YGTTVLTEFLIV*FGFAPSASSGL
Trigger: GAGTCCGGAAGAGGCGGAGGGCGCAAAGCCAAACCATACAATCAGGAACTCGGTGAGCACAGTTGTACCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109336.2