Pregenerated sensors for WFDC15A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051769Ensembl transcript IDs: ENSMUST00000063251.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTGGAGCCAATGCCGTCGTTATTTTCCAAGACTTGGTTAAGAAAGGTTTTTCATGGAGGATGGTTGTTGTaGACAGTAGGAGGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LEPMPSLFSKTWLRKVFHGGWLL*TVGGCL Trigger: CAAGCAGCCTCCTACTGTTCACAACAACCATCCTCC...ATGAAAAACCTTTCTTAACCAAGTCTTGGAAAATAACGACGGCATTGGCTCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063251.3 |
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| CDS GCA 90 bp | CAGTACCCCTGTTTCGGCGTAACTCCTTTCCTAGTTGCTCTAGGCTaGGCCATGCTGAGGCAAAGGAGGATGGTTGTTGTGAACAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: QYPCFGVTPFLVALG*AMLRQRRMVVVNSR Trigger: CCTACTGTTCACAACAACCATCCTCCTTTGCCTCAGCATGGCGCAGCCTAGAGCAACTAGGAAAGGAGTTACGCCGAAACAGGGGTACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063251.3 |
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| CDS GCA 90 bp | AAACTCCGGACAGTACCCCTGTTTCGGCGTAACTCCTTTCCTAGTTaGTCTAGGCTGCGCCATGCTGAGGCAAAGGAGGATGGTTGTTGT | + |
|
Preference number: 5 (lower is better) Translates to: KLRTVPLFRRNSFPS*SRLRHAEAKEDGCC Trigger: ACAACAACCATCCTCCTTTGCCTCAGCATGGCGCAGCCTAGAGCAACTAGGAAAGGAGTTACGCCGAAACAGGGGTACTGTCCGGAGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063251.3 |
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| CDS GCA 72 bp | ACAGTACCCCTGTTTCGGCGTAACTCCTTTCCTAGTTaGTCTAGGCTGCGCCATGCTGAGGCAAAGGAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: TVPLFRRNSFPS*SRLRHAEAKED Trigger: ATCCTCCTTTGCCTCAGCATGGCGCAGCCTAGAGCAACTAGGAAAGGAGTTACGCCGAAACAGGGGTACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063251.3 |
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| CDS GCA 72 bp | TGTTTCGGCGTAACTCCTTTCCTAGTTGCTCTAGGCTaGGCCATGCTGAGGCAAAGGAGGATGGTTGTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: CFGVTPFLVALG*AMLRQRRMVVV Trigger: CACAACAACCATCCTCCTTTGCCTCAGCATGGCGCAGCCTAGAGCAACTAGGAAAGGAGTTACGCCGAAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063251.3 |
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