RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WEE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031016

Ensembl transcript IDs: ENSMUST00000033326.10

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTaGAGGGCAGCATCTACTAGCCAAATATTGTTAGTCAAATGGCTA +
Preference number: 1 (lower is better)
Translates to: QTKVNRKTSETFPSF*RAASTSQILLVKWL
Trigger: TAGCCATTTGACTAACAATATTTGGCTAGTAGATGCTGCCCTCCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR CCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATAGCACACCACCACAGTaGCGCACCCCGCAAAGGGGG +
Preference number: 2 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNSTPPQ*RTPQRG
Trigger: CCCCCTTTGCGGGGTGCGCCACTGTGGTGGTGTGCT...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR TCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGACCCACATCCTACATaGAACAGACGGGAGATGAGA +
Preference number: 2 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNDPHPT*NRREMR
Trigger: TCTCATCTCCCGTCTGTTTCATGTAGGATGTGGGTC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR TCA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCCACTGCAACAGTGAATaGGAAGCAGCACACCACCAC +
Preference number: 2 (lower is better)
Translates to: INTAFKQGGVGALFQCSSHCNSE*EAAHHH
Trigger: GTGGTGGTGTGCTGCTTCTCATTCACTGTTGCAGTG...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR TCA 90 bp GTGTTTCAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTGGGAGGCAGAGGAGTACTaGGTCTCTGAGCATTTCCCT +
Preference number: 2 (lower is better)
Translates to: VFQTKVNRKTSETFPSFWEAEEY*VSEHFP
Trigger: AGGGAAATGCTCAGAGACTCAGTACTCCTCTGCCTC...CCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTGAAACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR CCA 90 bp TACATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTCTGACACAGGTACATTaGAGGCAGAGGAGTACTGAG +
Preference number: 2 (lower is better)
Translates to: YINTAFKQGGVGALFQCSLTQVH*RQRSTE
Trigger: CTCAGTACTCCTCTGCCTCCAATGTACCTGTGTCAG...ACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAATGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR TCA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCGATGAGACAAAAGCCTaGCAGAGCCAAGTCAGAATA +
Preference number: 2 (lower is better)
Translates to: INTAFKQGGVGALFQCSSDETKA*QSQVRI
Trigger: TATTCTGACTTGGCTCTGTCAGGCTTTTGTCTCATC...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR TCA 90 bp GTGTTTCAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTGGGAAACAGACGGGAGATaGGACAAAAGCCTGACAGAG +
Preference number: 2 (lower is better)
Translates to: VFQTKVNRKTSETFPSFWETDGR*DKSLTE
Trigger: CTCTGTCAGGCTTTTGTCTCATCTCCCGTCTGTTTC...CCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTGAAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR TCA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCGGAGTACTGAGTCTCTaGGCATTTCCCTTTTTGAAG +
Preference number: 2 (lower is better)
Translates to: INTAFKQGGVGALFQCSSGVLSL*AFPFLK
Trigger: CTTCAAAAAGGGAAATGCTCAGAGACTCAGTACTCC...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR TCA 90 bp GTGTTTCAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTGGACCAAGTACAAGACTTaGCAGGAGGAAGGAAACATG +
Preference number: 2 (lower is better)
Translates to: VFQTKVNRKTSETFPSFWTKYKT*QEEGNM
Trigger: CATGTTTCCTTCCTCCTGTCAAGTCTTGTACTTGGT...CCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTGAAACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR-3UTR GCA 90 bp GTGTTTCAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTGGACACGATGCCTAAAGTaGTCCCAGTTGGATATACAA +
Preference number: 2 (lower is better)
Translates to: VFQTKVNRKTSETFPSFWTRCLK*SQLDIQ
Trigger: TTGTATATCCAACTGGGAGCACTTTAGGCATCGTGT...CCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTGAAACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
3UTR CCA 72 bp GTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTaGAGGGCAGCATCTACTAGCCAAATATTGTTAGTC +
Preference number: 3 (lower is better)
Translates to: VNRKTSETFPSF*RAASTSQILLV
Trigger: GACTAACAATATTTGGCTAGTAGATGCTGCCCTCCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAATCCTCCCCCGTACTGTaGCCGCTGCCTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHESSPVL*PLPSSS
Trigger: GGAGGAGGAAGGCAGCGGCCACAGTACGGGGGAGGA...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAACACCAGCTCCATTGCTaGAGGCCTTCTCTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHEHQLHC*RPSLWV
Trigger: GACCCAGAGAGAAGGCCTTCAGCAATGGAGCTGGTG...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR GCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATCGGGTGGGCGGCGGCTaGTGTCGGCTCAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNRVGGG*CRLRKL
Trigger: GAGCTTCCTGAGCCGACAGCAGCCGCCGCCCACCCG...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGCCGCCGCAGCGCACTaGCGAGAACGGGCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNAAAAH*RERAAQ
Trigger: CTGAGCAGCCCGTTCTCGCCAGTGCGCTGCGGCGGC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAACTCTCTGGGTCAGGATaGATCATGACTCTCAGCAAC +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHELSGSG*IMTLSN
Trigger: GTTGCTGAGAGTCATGATTCATCCTGACCCAGAGAG...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAAAACTCTGTCACCTCCTaGGAAAGCACTTGTGGGATC +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHENSVTS*ESTCGI
Trigger: GATCCCACAAGTGCTTTCCCAGGAGGTGACAGAGTT...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGGCGAATCCGGTTCCTaGAAGGCCGAGTCCTCCCCC +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNGESGS*KAESSP
Trigger: GGGGGAGGACTCGGCCTTCCAGGAACCGGATTCGCC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAAGAAGTTCTATTACTCTaGGTGGTGGATCTAGTGGCC +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHEEVLLL*VVDLVA
Trigger: GGCCACTAGATCCACCACCCAGAGTAATAGAACTTC...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAAACTTTTCTGTGTCCATaGATAGAGAACTACCCCGGA +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHETFLCP*IENYPG
Trigger: TCCGGGGTAGTTCTCTATTCATGGACACAGAAAAGT...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATTGCCCGGCGAGAAGATaGGCTTCTGCCGCAGACTGT +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNCPARR*ASAADC
Trigger: ACAGTCTGCGGCAGAAGCTCATCTTCTCGCCGGGCA...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAACAGTCAAGTAGCTCATaGCTCTGTAGTTCTCACTTA +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHEQSSSS*LCSSHL
Trigger: TAAGTGAGAACTACAGAGTCATGAGCTACTTGACTG...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR GCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATCGAACAGGCGCAGCTTaGGGAAGGTCTTGTGCGGAG +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNRTGAA*GRSCAE
Trigger: CTCCGCACAAGACCTTCCGCAAGCTGCGCCTGTTCG...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAAACTTTGGCTGCCATTTaGGCTTTCTTGAGTTCTTTC +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHETLAAI*AFLSSF
Trigger: GAAAGAACTCAAGAAAGCCCAAATGGCAGCCAAAGT...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAAGAATTCTCTTTTTCCTaGCTTTTCTGTGTCCATGAA +
Preference number: 4 (lower is better)
Translates to: RTPQRGLEHPTVTHILHEEFSFS*LFCVHE
Trigger: TTCATGGACACAGAAAAGTCAGGAAAAAGAGAATTC...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR GCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATCGGATCTCGTGCCACTaGTCTCCATTTCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNRISCH*SPFLGR
Trigger: CCTTCCCAGAAATGGAGAGCAGTGGCACGAGATCCG...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR GCA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCTGCCCGTTCCTCAGCTaGAACTTTGGCTGCCATTTG +
Preference number: 4 (lower is better)
Translates to: INTAFKQGGVGALFQCSSCPFLS*NFGCHL
Trigger: CAAATGGCAGCCAAAGTTGCAGCTGAGGAACGGGCA...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATCCTCAGCTGCAACTTTaGCTGCCATTTGGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNPQLQL*LPFGLS
Trigger: AGAAAGCCCAAATGGCAGCCAAAGTTGCAGCTGAGG...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR GCA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCTCTCTCAAAGCATTCTaGTCATCAACAGAGCCAGCC +
Preference number: 4 (lower is better)
Translates to: INTAFKQGGVGALFQCSSSLKAF*SSTEPA
Trigger: GGCTGGCTCTGTTGATGAGCAGAATGCTTTGAGAGA...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR GCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGACAACAACACTGAATaGTTCACCAGCTCCATTGCT +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNDNNTE*FTSSIA
Trigger: AGCAATGGAGCTGGTGAAGCATTCAGTGTTGTTGTC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGGGTTAATATTCACTTaGGGAGTTTGCCGTGTATCG +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNGLIFT*GVCRVS
Trigger: CGATACACGGCAAACTCCCCAAGTGAATATTAACCC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATTTCAGTTGTATACCGTaGCTTCATGTTGCTTTCAGT +
Preference number: 4 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNFSCIP*LHVAFS
Trigger: ACTGAAAGCAACATGAAGTCACGGTATACAACTGAA...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCCAGCACATACGACTGTaGGAGCAAGAGCAAAAATAT +
Preference number: 4 (lower is better)
Translates to: INTAFKQGGVGALFQCSSQHIRL*EQEQKY
Trigger: ATATTTTTGCTCTTGCTCTCACAGTCGTATGTGCTG...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp GTGTTTCAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTGGTGCAGACAACAACACTaGATGCTTCACCAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: VFQTKVNRKTSETFPSFWCRQQH*MLHQLH
Trigger: ATGGAGCTGGTGAAGCATTCAGTGTTGTTGTCTGCA...CCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTGAAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CCA 90 bp GTGTTTCAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTGGTTCTGTATAAGCATGTaGTCATCCTCTGCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: VFQTKVNRKTSETFPSFWFCISM*SSSAQA
Trigger: TGCCTGGGCAGAGGATGACCACATGCTTATACAGAA...CCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTGAAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp TACATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTTCACCTTCTTCAACTTaGGGACTAGAGATTCTTGTT +
Preference number: 4 (lower is better)
Translates to: YINTAFKQGGVGALFQCSSPSST*GLEILV
Trigger: AACAAGAATCTCTAGTCCTCAAGTTGAAGAAGGTGA...ACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp GTGTTTCAGACCAAAGTTAATAGGAAAACAAGTGAGACATTTCCCTCCTTTTGGCCATTTGGGCTTTCTTaGGTTCTTTCTGCAAAAGAG +
Preference number: 4 (lower is better)
Translates to: VFQTKVNRKTSETFPSFWPFGLS*VLSAKE
Trigger: CTCTTTTGCAGAAAGAACTCAAGAAAGCCCAAATGG...CCAAAAGGAGGGAAATGTCTCACTTGTTTTCCTATTAACTTTGGTCTGAAACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR TCA 90 bp TACATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTGACAGCATTTGGGATTaGGGTTCGAGATATAAAAAT +
Preference number: 4 (lower is better)
Translates to: YINTAFKQGGVGALFQCSDSIWD*GSRYKN
Trigger: ATTTTTATATCTCGAACCTCAATCCCAAATGCTGTC...ACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAATGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CCA 90 bp GCCTCGGCAGGGCTGCGTGCAGAAGGCAGGGGCGAATCCGGTTCCTaGAAGGCCGAGTCCTCCCCCGTACTGTGGCCGCTGCCTTCCTCC +
Preference number: 5 (lower is better)
Translates to: ASAGLRAEGRGESGS*KAESSPVLWPLPSS
Trigger: GGAGGAAGGCAGCGGCCACAGTACGGGGGAGGACTCGGCCTTCCAGGAACCGGATTCGCCCCTGCCTTCTGCACGCAGCCCTGCCGAGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 90 bp GCGTGTCGAACAGGCGCAGCTTGCGGAAGGTCTTGTGCGGAGGGGTaGTCGGGTAGTCGGGCTGCGGCGAGCAGGGGTCGTCCATGGCTC +
Preference number: 5 (lower is better)
Translates to: ACRTGAACGRSCAEG*SGSRAAASRGRPWL
Trigger: GAGCCATGGACGACCCCTGCTCGCCGCAGCCCGACTACCCGAGCACCCCTCCGCACAAGACCTTCCGCAAGCTGCGCCTGTTCGACACGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS TCA 90 bp CCTCCTCCTCCTCCTCTTCCTCACAGTCGCTGCCCGGCGAGAAGATaGGCTTCTGCCGCAGACTGTAAGCGGCTCCTACGCGGCGGGTGG +
Preference number: 5 (lower is better)
Translates to: PPPPPLPHSRCPARR*ASAADCKRLLRGGW
Trigger: CCACCCGCCGCGTAGGAGCCGCTTACAGTCTGCGGCAGAAGCTCATCTTCTCGCCGGGCAGCGACTGTGAGGAAGAGGAGGAGGAGGAGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 90 bp AATCCGGTTCCTGGAAGGCCGAGTCCTCCCCCGTACTGTGGCCGCTaGCTTCCTCCTCCTCCTCCTCCTCTTCCTCACAGTCGCTGCCCG +
Preference number: 5 (lower is better)
Translates to: NPVPGRPSPPPYCGR*LPPPPPPLPHSRCP
Trigger: CGGGCAGCGACTGTGAGGAAGAGGAGGAGGAGGAGGAGGAAGGCAGCGGCCACAGTACGGGGGAGGACTCGGCCTTCCAGGAACCGGATT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CCA 90 bp AGGGGCGAATCCGGTTCCTGGAAGGCCGAGTCCTCCCCCGTACTGTaGCCGCTGCCTTCCTCCTCCTCCTCCTCCTCTTCCTCACAGTCG +
Preference number: 5 (lower is better)
Translates to: RGESGSWKAESSPVL*PLPSSSSSSSSSQS
Trigger: CGACTGTGAGGAAGAGGAGGAGGAGGAGGAGGAAGGCAGCGGCCACAGTACGGGGGAGGACTCGGCCTTCCAGGAACCGGATTCGCCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 90 bp AAAGCAAACTCTTGGGAGTGTGCGGCGTGTCGAACAGGCGCAGCTTaGGGAAGGTCTTGTGCGGAGGGGTGCTCGGGTAGTCGGGCTGCG +
Preference number: 5 (lower is better)
Translates to: KANSWECAACRTGAA*GRSCAEGCSGSRAA
Trigger: CGCAGCCCGACTACCCGAGCACCCCTCCGCACAAGACCTTCCGCAAGCTGCGCCTGTTCGACACGCCGCACACTCCCAAGAGTTTGCTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS TCA 90 bp CTGGCGAGAACGGGCTGCTCAGAAAGTAGGCGGTCGAAGGTGATTTaGCGGGCGACGAGGAGCCGAAACCCTCCTCCTCCCAAGAGTCGC +
Preference number: 5 (lower is better)
Translates to: LARTGCSESRRSKVI*RATRSRNPPPPKSR
Trigger: GCGACTCTTGGGAGGAGGAGGGTTTCGGCTCCTCGTCGCCCGTCAAATCACCTTCGACCGCCTACTTTCTGAGCAGCCCGTTCTCGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS TCA 90 bp GCGCACTGGCGAGAACGGGCTGCTCAGAAAGTAGGCGGTCGAAGGTaGTTTGACGGGCGACGAGGAGCCGAAACCCTCCTCCTCCCAAGA +
Preference number: 5 (lower is better)
Translates to: AHWRERAAQKVGGRR*FDGRRGAETLLLPR
Trigger: TCTTGGGAGGAGGAGGGTTTCGGCTCCTCGTCGCCCGTCAAATCACCTTCGACCGCCTACTTTCTGAGCAGCCCGTTCTCGCCAGTGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAATCGAACAGGCGCAGCTaGCGGAAGGTCTTGTGCGGA +
Preference number: 5 (lower is better)
Translates to: RTPQRGLEHPTVTHILHESNRRS*RKVLCG
Trigger: TCCGCACAAGACCTTCCGCAAGCTGCGCCTGTTCGA...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 90 bp CCGGAATCAATAACTCGCGCTTTGGAAAGCAAACTCTTGGGAGTGTaGGGCGTGTCGAACAGGCGCAGCTTGCGGAAGGTCTTGTGCGGA +
Preference number: 5 (lower is better)
Translates to: PESITRALESKLLGV*GVSNRRSLRKVLCG
Trigger: TCCGCACAAGACCTTCCGCAAGCTGCGCCTGTTCGACACGCCGCACACTCCCAAGAGTTTGCTTTCCAAAGCGCGAGTTATTGATTCCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGCGGTCGAAGGTGATTaGACGGGCGACGAGGAGCCG +
Preference number: 5 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNAVEGD*TGDEEP
Trigger: CGGCTCCTCGTCGCCCGTCAAATCACCTTCGACCGC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCAGCTTGCGGAAGGTCTaGTGCGGAGGGGTGCTCGGG +
Preference number: 5 (lower is better)
Translates to: INTAFKQGGVGALFQCSSSLRKV*CGGVLG
Trigger: CCCGAGCACCCCTCCGCACAAGACCTTCCGCAAGCT...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp CGCACCCCGCAAAGGGGGCTGGAACATCCAACAGTGACCCACATCCTACATGAAATTCACTTGGGGAGTTaGCCGTGTATCGAATTCTCT +
Preference number: 5 (lower is better)
Translates to: RTPQRGLEHPTVTHILHEIHLGS*PCIEFS
Trigger: AGAGAATTCGATACACGGCAAACTCCCCAAGTGAAT...TTCATGTAGGATGTGGGTCACTGTTGGATGTTCCAGCCCCCTTTGCGGGGTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGCTTCACCAGCTCCATaGCTGAAGGCCTTCTCTCTG +
Preference number: 5 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNASPAP*LKAFSL
Trigger: CAGAGAGAAGGCCTTCAGCAATGGAGCTGGTGAAGC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp TTTCTAGAGGTCACAACCAGGAAAGACACCTTTCACCACACTGCAACAGTGAATGCCATTTGGGCTTTCTaGAGTTCTTTCTGCAAAAGA +
Preference number: 5 (lower is better)
Translates to: FLEVTTRKDTFHHTATVNAIWAF*SSFCKR
Trigger: TCTTTTGCAGAAAGAACTCAAGAAAGCCCAAATGGC...ATTCACTGTTGCAGTGTGGTGAAAGGTGTCTTTCCTGGTTGTGACCTCTAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCGCTCATGAAATTCAGTaGTATACCGTGACTTCATGT +
Preference number: 5 (lower is better)
Translates to: INTAFKQGGVGALFQCSSAHEIQ*YTVTSC
Trigger: ACATGAAGTCACGGTATACAACTGAATTTCATGAGC...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCATCACCTTCTTCAACTaGAGGACTAGAGATTCTTGT +
Preference number: 5 (lower is better)
Translates to: INTAFKQGGVGALFQCSSITFFN*RTRDSC
Trigger: ACAAGAATCTCTAGTCCTCAAGTTGAAGAAGGTGAT...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS-3UTR CAA 90 bp ATTAATACAGCATTCAAACAGGGAGGGGTAGGTGCACTTTTTCAATGCAGTAGCTTCTTTTGGCAGGTCTaGTTTCATCTTCAAACTCAT +
Preference number: 5 (lower is better)
Translates to: INTAFKQGGVGALFQCSSFFWQV*FHLQTH
Trigger: ATGAGTTTGAAGATGAAACAAGACCTGCCAAAAGAA...GCTACTGCATTGAAAAAGTGCACCTACCCCTCCCTGTTTGAATGCTGTATTAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 72 bp CCTGCAGCAGCAAGTCGTCCTCCAGCTCTCCCGGGCTaGTGGGCTCCGCGCCGGGCGAGCGACGGCGGCGCT +
Preference number: 6 (lower is better)
Translates to: PAAASRPPALPG*WAPRRASDGGA
Trigger: AGCGCCGCCGTCGCTCGCCCGGCGCGGAGCCCAGCAGCCCGGGAGAGCTGGAGGACGACTTGCTGCTGCAGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CCA 72 bp CTGCGGGGAGGCATCCCCTGGGCCGCCGCAGCGCACTaGCGAGAACGGGCTGCTCAGAAAGTAGGCGGTCGA +
Preference number: 6 (lower is better)
Translates to: LRGGIPWAAAAH*RERAAQKVGGR
Trigger: TCGACCGCCTACTTTCTGAGCAGCCCGTTCTCGCCAGTGCGCTGCGGCGGCCCAGGGGATGCCTCCCCGCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 72 bp ACAGGCGCAGCTTGCGGAAGGTCTTGTGCGGAGGGGTaGTCGGGTAGTCGGGCTGCGGCGAGCAGGGGTCGT +
Preference number: 6 (lower is better)
Translates to: TGAACGRSCAEG*SGSRAAASRGR
Trigger: ACGACCCCTGCTCGCCGCAGCCCGACTACCCGAGCACCCCTCCGCACAAGACCTTCCGCAAGCTGCGCCTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CCA 72 bp GGGCTGCGTGCAGAAGGCAGGGGCGAATCCGGTTCCTaGAAGGCCGAGTCCTCCCCCGTACTGTGGCCGCTG +
Preference number: 6 (lower is better)
Translates to: GLRAEGRGESGS*KAESSPVLWPL
Trigger: CAGCGGCCACAGTACGGGGGAGGACTCGGCCTTCCAGGAACCGGATTCGCCCCTGCCTTCTGCACGCAGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 72 bp TCTTGGGAGTGTGCGGCGTGTCGAACAGGCGCAGCTTaGGGAAGGTCTTGTGCGGAGGGGTGCTCGGGTAGT +
Preference number: 6 (lower is better)
Translates to: SWECAACRTGAA*GRSCAEGCSGS
Trigger: ACTACCCGAGCACCCCTCCGCACAAGACCTTCCGCAAGCTGCGCCTGTTCGACACGCCGCACACTCCCAAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS TCA 72 bp ACGGGCTGCTCAGAAAGTAGGCGGTCGAAGGTGATTTaGCGGGCGACGAGGAGCCGAAACCCTCCTCCTCCC +
Preference number: 6 (lower is better)
Translates to: TGCSESRRSKVI*RATRSRNPPPP
Trigger: GGGAGGAGGAGGGTTTCGGCTCCTCGTCGCCCGTCAAATCACCTTCGACCGCCTACTTTCTGAGCAGCCCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS TCA 72 bp CGAGAACGGGCTGCTCAGAAAGTAGGCGGTCGAAGGTaGTTTGACGGGCGACGAGGAGCCGAAACCCTCCTC +
Preference number: 6 (lower is better)
Translates to: RERAAQKVGGRR*FDGRRGAETLL
Trigger: GAGGAGGGTTTCGGCTCCTCGTCGCCCGTCAAATCACCTTCGACCGCCTACTTTCTGAGCAGCCCGTTCTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS GCA 72 bp ATAACTCGCGCTTTGGAAAGCAAACTCTTGGGAGTGTaGGGCGTGTCGAACAGGCGCAGCTTGCGGAAGGTC +
Preference number: 6 (lower is better)
Translates to: ITRALESKLLGV*GVSNRRSLRKV
Trigger: GACCTTCCGCAAGCTGCGCCTGTTCGACACGCCGCACACTCCCAAGAGTTTGCTTTCCAAAGCGCGAGTTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CAA 72 bp CCGGAATCAATAACTCGCGCTTTGGAAAGCAAACTCTaGGGAGTGTGCGGCGTGTCGAACAGGCGCAGCTTG +
Preference number: 6 (lower is better)
Translates to: PESITRALESKL*GVCGVSNRRSL
Trigger: CAAGCTGCGCCTGTTCGACACGCCGCACACTCCCAAGAGTTTGCTTTCCAAAGCGCGAGTTATTGATTCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CAA 90 bp GAACTACCCCGGAGTTTAACAGAGCCGGAATCAATAACTCGCGCTTaGGAAAGCAAACTCTTGGGAGTGTGCGGCGTGTCGAACAGGCGC +
Preference number: 6 (lower is better)
Translates to: ELPRSLTEPESITRA*ESKLLGVCGVSNRR
Trigger: GCGCCTGTTCGACACGCCGCACACTCCCAAGAGTTTGCTTTCCAAAGCGCGAGTTATTGATTCCGGCTCTGTTAAACTCCGGGGTAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CAA 72 bp CGGAGTTTAACAGAGCCGGAATCAATAACTCGCGCTTaGGAAAGCAAACTCTTGGGAGTGTGCGGCGTGTCG +
Preference number: 6 (lower is better)
Translates to: RSLTEPESITRA*ESKLLGVCGVS
Trigger: CGACACGCCGCACACTCCCAAGAGTTTGCTTTCCAAAGCGCGAGTTATTGATTCCGGCTCTGTTAAACTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CCA 72 bp AGTACAGGATCCGGAGTAAAGGGGTTAATATTCACTTaGGGAGTTTGCCGTGTATCGAATTCTCTTTTTCCT +
Preference number: 6 (lower is better)
Translates to: STGSGVKGLIFT*GVCRVSNSLFP
Trigger: AGGAAAAAGAGAATTCGATACACGGCAAACTCCCCAAGTGAATATTAACCCCTTTACTCCGGATCCTGTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10
CDS CCA 72 bp ATTTTCTTTCCAATAAGTCGAGAAGTTCTATTACTCTaGGTGGTGGATCTAGTGGCCATCCGATCTGTGAAG +
Preference number: 6 (lower is better)
Translates to: IFFPISREVLLL*VVDLVAIRSVK
Trigger: CTTCACAGATCGGATGGCCACTAGATCCACCACCCAGAGTAATAGAACTTCTCGACTTATTGGAAAGAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033326.10