RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WDTC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037622

Ensembl transcript IDs: ENSMUST00000043305.14, ENSMUST00000105906.2

Found 304 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCGAGACAGCCTAGGACAGGCCAGGAGCGGGGGAGGAAGCTCCACTaGCCCCAGGCAGGTGGCCTGACCTTGCCACTGCGGGATCCTGTT +
Preference number: 1 (lower is better)
Translates to: ARQPRTGQERGRKLH*PQAGGLTLPLRDPV
Trigger: AACAGGATCCCGCAGTGGCAAGGTCAGGCCACCTGCCTGGGGGCAGTGGAGCTTCCTCCCCCGCTCCTGGCCTGTCCTAGGCTGTCTCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 90 bp CCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTaGCAACAACAGGCCAGGCAAGCCTCGGCCAGCAGGGAGTTCCAC +
Preference number: 1 (lower is better)
Translates to: PSGKTTGELARESGE*QQQARQASASREFH
Trigger: GTGGAACTCCCTGCTGGCCGAGGCTTGCCTGGCCTGTTGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR GCA 90 bp CCAGGCAGGTGGCCTGACCTTGCCACTGCGGGATCCTGTTTCCTATaGTTCCACCCGAACACTGGTGGCTGTGGAGGGACCTTCCGGAAA +
Preference number: 1 (lower is better)
Translates to: PGRWPDLATAGSCFL*FHPNTGGCGGTFRK
Trigger: TTTCCGGAAGGTCCCTCCACAGCCACCAGTGTTCGGGTGGAAGCATAGGAAACAGGATCCCGCAGTGGCAAGGTCAGGCCACCTGCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 90 bp AAAAGCCATCACTTCTTTGGTCTTTGTGGCGGCTCAGCATGTGGGTaGGAAGGAGGGCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCC +
Preference number: 1 (lower is better)
Translates to: KSHHFFGLCGGSACG*EGGRRGCKGSLGRA
Trigger: GGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGCCCTCCTTCCCACCCACATGCTGAGCCGCCACAAAGACCAAAGAAGTGATGGCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR TCA 90 bp GCAGTCCGTAAAGACAGCTTCAGCTCTTGCCTCTCCACTGGAGGCTaGAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGACACCGAAGC +
Preference number: 1 (lower is better)
Translates to: AVRKDSFSSCLSTGG*RILRRARAFQRHRS
Trigger: GCTTCGGTGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGGCAAGAGCTGAAGCTGTCTTTACGGACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR TCA 90 bp AAGACAGCTTCAGCTCTTGCCTCTCCACTGGAGGCTGAAGGATTTTaGGAAGGGCCAGAGCCTTCCAGAGACACCGAAGCAGGAGGTAAG +
Preference number: 1 (lower is better)
Translates to: KTASALASPLEAEGF*EGPEPSRDTEAGGK
Trigger: CTTACCTCCTGCTTCGGTGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGGCAAGAGCTGAAGCTGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR GCA 90 bp GACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTaGAGCAATCCCCACCCACAAAGTCAAACTAACAAACAAAACAGG +
Preference number: 1 (lower is better)
Translates to: DSQGTISPRVRKPAS*SNPHPQSQTNKQNR
Trigger: CCTGTTTTGTTTGTTAGTTTGACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTTGGCGGCTCAGCATGTaGGTGGGAAGGAGGGCGGAG +
Preference number: 2 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRAWRLSM*VGRRAE
Trigger: CTCCGCCCTCCTTCCCACCCACATGCTGAGCCGCCA...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTCCACCCGAACACTGGTaGCTGTGGAGGGACCTTCCG +
Preference number: 2 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRAPPEHW*LWRDLP
Trigger: CGGAAGGTCCCTCCACAGCCACCAGTGTTCGGGTGG...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCATGGCGGCTCAGCATGTaGGTGGGAAGGAGGGCGGAG +
Preference number: 2 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPWRLSM*VGRRAE
Trigger: CTCCGCCCTCCTTCCCACCCACATGCTGAGCCGCCA...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGCCCAGGCAGGTGGCCTaGCCTTGCCACTGCGGGATC +
Preference number: 2 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRPRQVA*PCHCGI
Trigger: GATCCCGCAGTGGCAAGGTCAGGCCACCTGCCTGGG...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGTCTCCTGCACAGGGCTaGGTACTGGGGCCAGGAGGG +
Preference number: 2 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERSPAQG*VLGPGG
Trigger: CCCTCCTGGCCCCAGTACCCAGCCCTGTGCAGGAGA...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTCCTGGCGGGGAGCTCTaGCAGAAAGGTCACAGTGAG +
Preference number: 2 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRAPGGEL*QKGHSE
Trigger: CTCACTGTGACCTTTCTGCCAGAGCTCCCCGCCAGG...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp ACCCCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGGGCCGGCACTGCACCTaGCCCTCTGCGCTGTCCTCG +
Preference number: 2 (lower is better)
Translates to: TPPRHTVGKARPSETARQGRHCT*PSALSS
Trigger: CGAGGACAGCGCAGAGGGCCAGGTGCAGTGCCGGCC...CTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGCCAGGAGGGTCTAGCTaGGCCGGCACTGCACCTGGC +
Preference number: 2 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRPGGSS*AGTAPG
Trigger: GCCAGGTGCAGTGCCGGCCCAGCTAGACCCTCCTGG...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
3UTR-3UTR GCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACACTGCACCTGGCCCTCTaGGCTGTCCTCGTCATCAGA +
Preference number: 2 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTLHLAL*AVLVIR
Trigger: TCTGATGACGAGGACAGCGCAGAGGGCCAGGTGCAG...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGCACAGGGCTGGGTACTaGGGCCAGGAGGGTCTAGCT +
Preference number: 2 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERHRAGY*GQEGLA
Trigger: AGCTAGACCCTCCTGGCCCCAGTACCCAGCCCTGTG...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp CCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTCAGAGCCCAGCCCTCTaGTCTCCTGCACAGGGCTGG +
Preference number: 2 (lower is better)
Translates to: PPRHTVGKARPSETARQPQSPAL*SPAQGW
Trigger: CCAGCCCTGTGCAGGAGATCAGAGGGCTGGGCTCTG...AGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp GCTGGGGCTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCACAGAGCCCAGCCCTCTaGTCTCCTGCACAGGGCTGG +
Preference number: 2 (lower is better)
Translates to: AGAGDSQGTISPRVRKPAQSPAL*SPAQGW
Trigger: CCAGCCCTGTGCAGGAGATCAGAGGGCTGGGCTCTG...TGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAGCCCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGGCAGAAAGGTCACAGTaGGGCCGAGAAGCGCCCCAG +
Preference number: 2 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRAERSQ*GREAPQ
Trigger: CTGGGGCGCTTCTCGGCCTCACTGTGACCTTTCTGC...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR GCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGAGGGCGGAGAGGGTaGAAAGGGTCCTTAGGAAGA +
Preference number: 2 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTGGRRG*KGSLGR
Trigger: TCTTCCTAAGGACCCTTTGCACCCTCTCCGCCCTCC...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACATCTCCTGCACAGGGCTaGGTACTGGGGCCAGGAGGG +
Preference number: 2 (lower is better)
Translates to: TFRKDHRGASPGVRRVATSPAQG*VLGPGG
Trigger: CCCTCCTGGCCCCAGTACCCAGCCCTGTGCAGGAGA...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCACTTCCACCCGAACACTaGTGGCTGTGGAGGGACCTT +
Preference number: 2 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPLPPEH*WLWRDL
Trigger: AAGGTCCCTCCACAGCCACCAGTGTTCGGGTGGAAG...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGCCTGGCGGGGAGCTCTaGCAGAAAGGTCACAGTGAG +
Preference number: 2 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERPGGEL*QKGHSE
Trigger: CTCACTGTGACCTTTCTGCCAGAGCTCCCCGCCAGG...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGAGGGAGGCTTGGTGGTaGAGTGGCCGCTGTGTCCAG +
Preference number: 2 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRREAWW*SGRCVQ
Trigger: CTGGACACAGCGGCCACTCCACCACCAAGCCTCCCT...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCGAGGCTGAAGGATTTTaGGAAGGGCCAGAGCCTTCC +
Preference number: 2 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTEAEGF*EGPEPS
Trigger: GGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTC...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGAGCTCAGAAGCTAGACTaGGAGGAGGCACCTGGCAGA +
Preference number: 2 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRAQKLD*EEAPGR
Trigger: TCTGCCAGGTGCCTCCTCTCAGTCTAGCTTCTGAGC...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGCGCTGCTCAGGCCTGTaGTCCGATAGCCCATGTCCA +
Preference number: 2 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLRCSGL*SDSPCP
Trigger: TGGACATGGGCTATCGGATCACAGGCCTGAGCAGCG...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCGAACACTGGTGGCTGTaGAGGGACCTTCCGGAAAGA +
Preference number: 2 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTEHWWL*RDLPER
Trigger: TCTTTCCGGAAGGTCCCTCCACAGCCACCAGTGTTC...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR TCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGGAGGCTGAAGGATTTTaGGAAGGGCCAGAGCCTTCC +
Preference number: 2 (lower is better)
Translates to: GMNQLPAPEQEPRGQREREAEGF*EGPEPS
Trigger: GGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTC...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCCTTTTCTGCTGGGGCTaGGGACAGTCAAGGGACAAT +
Preference number: 2 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTLFCWG*GQSRDN
Trigger: ATTGTCCCTTGACTGTCCCCAGCCCCAGCAGAAAAG...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGCTCCTACTTTTCTGCTaGGGCTGGGGACAGTCAAGG +
Preference number: 2 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERLLLFC*GWGQSR
Trigger: CCTTGACTGTCCCCAGCCCCAGCAGAAAAGTAGGAG...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGAGAACACTGGTGGCTGTaGAGGGACCTTCCGGAAAGA +
Preference number: 2 (lower is better)
Translates to: GLCVSPHCRVQARQAGGREHWWL*RDLPER
Trigger: TCTTTCCGGAAGGTCCCTCCACAGCCACCAGTGTTC...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CAA 90 bp CCCAGAGCAGCAGGGGACAGAGAAAAGCCATCACTTCTTTGGTCTTaGTGGCGGCTCAGCATGTGGGTGGGAAGGAGGGCGGAGAGGGTG +
Preference number: 2 (lower is better)
Translates to: PRAAGDREKPSLLWS*WRLSMWVGRRAERV
Trigger: CACCCTCTCCGCCCTCCTTCCCACCCACATGCTGAGCCGCCACAAAGACCAAAGAAGTGATGGCTTTTCTCTGTCCCCTGCTGCTCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR GCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAAGAAAGCCAGCAAGTTaGAGCAATCCCCACCCACAA +
Preference number: 2 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPRKPAS*SNPHPQ
Trigger: TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCT...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR GCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAAGAAAGCCAGCAAGTTaGAGCAATCCCCACCCACAA +
Preference number: 2 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTRKPAS*SNPHPQ
Trigger: TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCT...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR GCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGGATCCTGTTTCCTATaGTTCCACCCGAACACTGGT +
Preference number: 2 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPGSCFL*FHPNTG
Trigger: ACCAGTGTTCGGGTGGAAGCATAGGAAACAGGATCC...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp ACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCACTTTTCTGCTGGGGCTaGGGACAGTCAAGGGACAAT +
Preference number: 2 (lower is better)
Translates to: TGLGEAGMNQLPAPEQEPLFCWG*GQSRDN
Trigger: ATTGTCCCTTGACTGTCCCCAGCCCCAGCAGAAAAG...TGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp ACCCCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCTTCCACCCGAACACTaGTGGCTGTGGAGGGACCTT +
Preference number: 2 (lower is better)
Translates to: TPPRHTVGKARPSETARQLPPEH*WLWRDL
Trigger: AAGGTCCCTCCACAGCCACCAGTGTTCGGGTGGAAG...CTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGCTCTTGCCTCTCCACTaGAGGCTGAAGGATTTTGAG +
Preference number: 2 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERLLPLH*RLKDFE
Trigger: CTCAAAATCCTTCAGCCTCCAGTGGAGAGGCAAGAG...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR GCA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACAGCCCTCTGATCTCCTaGACAGGGCTGGGTACTGGG +
Preference number: 2 (lower is better)
Translates to: QGTISPRVRKPASCSNPHSPLIS*TGLGTG
Trigger: CCCAGTACCCAGCCCTGTGCAGGAGATCAGAGGGCT...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACACGGGAGTCAGGAGAGTaGCAACAACAGGCCAGGCAA +
Preference number: 2 (lower is better)
Translates to: RHTVGKARPSETARQPRTRESGE*QQQARQ
Trigger: TTGCCTGGCCTGTTGTTGCCACTCTCCTGACTCCCG...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR GCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTAGCCCTCTGATCTCCTaGACAGGGCTGGGTACTGGG +
Preference number: 2 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSSPLIS*TGLGTG
Trigger: CCCAGTACCCAGCCCTGTGCAGGAGATCAGAGGGCT...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CCA 90 bp ACCCCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCTCTTGCCTCTCCACTaGAGGCTGAAGGATTTTGAG +
Preference number: 2 (lower is better)
Translates to: TPPRHTVGKARPSETARQLLPLH*RLKDFE
Trigger: CTCAAAATCCTTCAGCCTCCAGTGGAGAGGCAAGAG...CTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR GCA 72 bp GAGGGTCTAGCTGGGCCGGCACTGCACCTGGCCCTCTaGGCTGTCCTCGTCATCAGAGGCCCCGGCGCCCCC +
Preference number: 3 (lower is better)
Translates to: EGLAGPALHLAL*AVLVIRGPGAP
Trigger: GGGGGCGCCGGGGCCTCTGATGACGAGGACAGCGCAGAGGGCCAGGTGCAGTGCCGGCCCAGCTAGACCCTC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
3UTR CCA 72 bp GAGCCACCTCAGCAGGGTAGGCCTGGCGGGGAGCTCTaGCAGAAAGGTCACAGTGAGGCCGAGAAGCGCCCC +
Preference number: 3 (lower is better)
Translates to: EPPQQGRPGGEL*QKGHSEAEKRP
Trigger: GGGGCGCTTCTCGGCCTCACTGTGACCTTTCTGCCAGAGCTCCCCGCCAGGCCTACCCTGCTGAGGTGGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 72 bp AGGGAAGGGAGGCTGCTTCTCCCCAGAGGCTGCAGCTaGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTG +
Preference number: 3 (lower is better)
Translates to: REGRLLLPRGCS*RAAAQRKHTGL
Trigger: CAGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAGCCTCCCTTCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR TCA 72 bp CCCAGAGGAAGCACACAGGGCTGGGGGAGGCTGGCATaGACCAACTCCCGGCTCCAGAGCAGGAACCAAGGG +
Preference number: 3 (lower is better)
Translates to: PRGSTQGWGRLA*TNSRLQSRNQG
Trigger: CCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTGTGCTTCCTCTGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 72 bp GAGGGAGGGAGAGAGGACAGGAGAGAGAGGGAGGGATaGAGGGAGGGAGGGAAGGGAGGCTGCTTCTCCCCA +
Preference number: 3 (lower is better)
Translates to: EGGREDRREREG*REGGKGGCFSP
Trigger: TGGGGAGAAGCAGCCTCCCTTCCCTCCCTCCCTCCATCCCTCCCTCTCTCTCCTGTCCTCTCTCCCTCCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CAA 90 bp AAGGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGCAGGTGGCCTGACCTaGCCACTGCGGGATCCTGTT +
Preference number: 3 (lower is better)
Translates to: KAYVSLHTAGSRLGRRAGAGGLT*PLRDPV
Trigger: AACAGGATCCCGCAGTGGCAAGGTCAGGCCACCTGC...TCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR GCA 72 bp TGGCCTGACCTTGCCACTGCGGGATCCTGTTTCCTATaGTTCCACCCGAACACTGGTGGCTGTGGAGGGACC +
Preference number: 3 (lower is better)
Translates to: WPDLATAGSCFL*FHPNTGGCGGT
Trigger: GGTCCCTCCACAGCCACCAGTGTTCGGGTGGAAGCATAGGAAACAGGATCCCGCAGTGGCAAGGTCAGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 72 bp CCCAGGGCCCAGCTCAACACTCTCGCTACCCCTCCCTaGCTTGAGAAAGGTCATGAGGAAGAGACAGGGGAG +
Preference number: 3 (lower is better)
Translates to: PRAQLNTLATPP*LEKGHEEETGE
Trigger: CTCCCCTGTCTCTTCCTCATGACCTTTCTCAAGCCAGGGAGGGGTAGCGAGAGTGTTGAGCTGGGCCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CAA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACAGCAGGTGGCCTGACCTaGCCACTGCGGGATCCTGTT +
Preference number: 3 (lower is better)
Translates to: RHTVGKARPSETARQPRTAGGLT*PLRDPV
Trigger: AACAGGATCCCGCAGTGGCAAGGTCAGGCCACCTGC...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 72 bp GGGATCCTGTTTCCTATGCTTCCACCCGAACACTGGTaGCTGTGGAGGGACCTTCCGGAAAGACCACAGGGG +
Preference number: 3 (lower is better)
Translates to: GILFPMLPPEHW*LWRDLPERPQG
Trigger: CCCCTGTGGTCTTTCCGGAAGGTCCCTCCACAGCCACCAGTGTTCGGGTGGAAGCATAGGAAACAGGATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CAA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGTCACTTCTTTGGTCTTaGTGGCGGCTCAGCATGTGG +
Preference number: 3 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLSLLWS*WRLSMW
Trigger: CCACATGCTGAGCCGCCACAAAGACCAAAGAAGTGA...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CAA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACAAGACAGCTTCAGCTCTaGCCTCTCCACTGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: RHTVGKARPSETARQPRTRQLQL*PLHWRL
Trigger: CAGCCTCCAGTGGAGAGGCAAGAGCTGAAGCTGTCT...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 72 bp TGCGGGATCCTGTTTCCTATGCTTCCACCCGAACACTaGTGGCTGTGGAGGGACCTTCCGGAAAGACCACAG +
Preference number: 3 (lower is better)
Translates to: CGILFPMLPPEH*WLWRDLPERPQ
Trigger: CTGTGGTCTTTCCGGAAGGTCCCTCCACAGCCACCAGTGTTCGGGTGGAAGCATAGGAAACAGGATCCCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 72 bp GGGGACAGAGAAAAGCCATCACTTCTTTGGTCTTTGTaGCGGCTCAGCATGTGGGTGGGAAGGAGGGCGGAG +
Preference number: 3 (lower is better)
Translates to: GDREKPSLLWSL*RLSMWVGRRAE
Trigger: CTCCGCCCTCCTTCCCACCCACATGCTGAGCCGCCACAAAGACCAAAGAAGTGATGGCTTTTCTCTGTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR-3UTR CAA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACACAGAAAGCCAGCAAGTaGCAGCAATCCCCACCCACA +
Preference number: 3 (lower is better)
Translates to: RHTVGKARPSETARQPRTQKASK*QQSPPT
Trigger: TGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTG...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR TCA 72 bp TCAGCTCTTGCCTCTCCACTGGAGGCTGAAGGATTTTaGGAAGGGCCAGAGCCTTCCAGAGACACCGAAGCA +
Preference number: 3 (lower is better)
Translates to: SALASPLEAEGF*EGPEPSRDTEA
Trigger: TGCTTCGGTGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGGCAAGAGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CCA 72 bp AGAGCAGCAGGGGACAGAGAAAAGCCATCACTTCTTTaGTCTTTGTGGCGGCTCAGCATGTGGGTGGGAAGG +
Preference number: 3 (lower is better)
Translates to: RAAGDREKPSLL*SLWRLSMWVGR
Trigger: CCTTCCCACCCACATGCTGAGCCGCCACAAAGACCAAAGAAGTGATGGCTTTTCTCTGTCCCCTGCTGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR TCA 72 bp AAAGACAGCTTCAGCTCTTGCCTCTCCACTGGAGGCTaGAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGA +
Preference number: 3 (lower is better)
Translates to: KDSFSSCLSTGG*RILRRARAFQR
Trigger: TCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGGCAAGAGCTGAAGCTGTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTGCACAACAGGGTCGATaGCACTGGTGGCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRAAQQGR*HWWPGS
Trigger: GCTTCCTGGCCACCAGTGGCATCGACCCTGTTGTGC...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAGCCACATGGGCGCCGTaGCAATGCGCTTCACCCGGT +
Preference number: 4 (lower is better)
Translates to: TGLGEAGMNQLPAPEQEPATWAP*QCASPG
Trigger: ACCGGGTGAAGCGCATTGCCACGGCGCCCATGTGGC...TGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCGCACCCCTTGCTCTCTaGCAGCCGGAAGCCGTTGCT +
Preference number: 4 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTAPLAL*QPEAVA
Trigger: AGCAACGGCTTCCGGCTGCCAGAGAGCAAGGGGTGC...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGACACACGCTCCAGGTATaGGGGCAGCTCCACCTGGGG +
Preference number: 4 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRHTLQV*GQLHLG
Trigger: CCCCAGGTGGAGCTGCCCCCATACCTGGAGCGTGTG...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCACACACGCTCCAGGTATaGGGGCAGCTCCACCTGGGG +
Preference number: 4 (lower is better)
Translates to: TGLGEAGMNQLPAPEQEPHTLQV*GQLHLG
Trigger: CCCCAGGTGGAGCTGCCCCCATACCTGGAGCGTGTG...TGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp TGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTGTAGAGCTGGATaGCCTGGGTCCACTGCTGGC +
Preference number: 4 (lower is better)
Translates to: CFSPEAAAGGLPPRGSTQGCRAG*PGSTAG
Trigger: GCCAGCAGTGGACCCAGGCCATCCAGCTCTACAGCC...CTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CCCGGCGCCCCCGCTGCTCAGGCCTGTGATCCGATAGCCCATGTCCAGCAGCATCAGGGTCGATGCCACTaGTGGCCAGGAAGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: PGAPAAQACDPIAHVQQHQGRCH*WPGSSS
Trigger: GCTACTGCTTCCTGGCCACCAGTGGCATCGACCCTG...ATGCTGCTGGACATGGGCTATCGGATCACAGGCCTGAGCAGCGGGGGCGCCGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTTCATGCGCCGCTGGTTaGCCTGAGATGCACCCTCCA +
Preference number: 4 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRASCAAG*PEMHPP
Trigger: TGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGA...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCATCGCCTCCAGGGGGTTaGCATTCATGCGCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPSPPGG*HSCAAG
Trigger: ACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGA...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR TCA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCTCCACCTGGGGGCTaGTGCACCCCTTGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLAPPGG*CTPCSL
Trigger: CAGAGAGCAAGGGGTGCATCAGCCCCCAGGTGGAGC...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACACGCCGCTGGTTGGCCTaGGATGCACCCTCCATATCT +
Preference number: 4 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTRRWLA*DAPSIS
Trigger: AGATATGGAGGGTGCATCTCAGGCCAACCAGCGGCG...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCCGCTGCTCAGGCCTGTaGTCCGATAGCCCATGTCCA +
Preference number: 4 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTRCSGL*SDSPCP
Trigger: TGGACATGGGCTATCGGATCACAGGCCTGAGCAGCG...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR GCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCACGGTCACAGAAGGTATaGACGCCTGCGGAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPRSQKV*TPAEGL
Trigger: GAGCCCTTCCGCAGGCGTGCATACCTTCTGTGACCG...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTGGCCAGACGGAAGTGTaGCTTCAGGTGGCAAGGGTT +
Preference number: 4 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRAGQTEV*LQVARV
Trigger: AACCCTTGCCACCTGAAGGCACACTTCCGTCTGGCC...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGTCGATGCCACTGGTaGCCAGGAAGCAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTGRCHW*PGSSSW
Trigger: CCAGCTACTGCTTCCTGGCCACCAGTGGCATCGACC...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTGCTCCACCTGGGGGCTaGTGCACCCCTTGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: PPRHTVGKARPSETARQPAPPGG*CTPCSL
Trigger: CAGAGAGCAAGGGGTGCATCAGCCCCCAGGTGGAGC...AGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCATTAGGGAGATGGCCTTaGGGCAGTCCCGGAGGGCAT +
Preference number: 4 (lower is better)
Translates to: TGLGEAGMNQLPAPEQEPLGRWP*GSPGGH
Trigger: ATGCCCTCCGGGACTGCCTCAAGGCCATCTCCCTAA...TGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGTGGGCGCCGTGGCAATaGGCTTCACCCGGTTTGTGT +
Preference number: 4 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERWAPWQ*ASPGLC
Trigger: ACACAAACCGGGTGAAGCGCATTGCCACGGCGCCCA...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAATGGACTCATCCCCCTaGAGCACTCGGACGAGGTTG +
Preference number: 4 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPMDSSP*STRTRL
Trigger: CAACCTCGTCCGAGTGCTGCAGGGGGATGAGTCCAT...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGGGGGGTTGGCATTCATaGGCCGCTGGTTGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRGGWHS*AAGWPE
Trigger: CTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCC...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
63% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR CCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACACACACAATGGTGTGCTaGTCGTCGGAACCAGACGCC +
Preference number: 4 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTHTMVC*SSEPDA
Trigger: GGCGTCTGGTTCCGACGACCAGCACACCATTGTGTG...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCACCAGGAAGCAGTAGCTaGGATGGGGCTGCAAGCAGT +
Preference number: 4 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPPGSSS*DGAASS
Trigger: ACTGCTTGCAGCCCCATCCCAGCTACTGCTTCCTGG...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACAGGCCGGCACTGCACCTaGCCCTCTGCGCTGTCCTCG +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTGRHCT*PSALSS
Trigger: CGAGGACAGCGCAGAGGGCCAGGTGCAGTGCCGGCC...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR TCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGTTAGGGAGATGGCCTTaGGGCAGTCCCGGAGGGCAT +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLALGRWP*GSPGGH
Trigger: ATGCCCTCCGGGACTGCCTCAAGGCCATCTCCCTAA...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGCCACAACTCGGCCTGTaGGGTCTTCACTCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERPQLGL*GLHSLV
Trigger: GACCAGAGAGTGAAGACCTCACAGGCCGAGTTGTGG...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCATCCCACACAATGGTGTaGTGGTCGTCGGAACCAGAC +
Preference number: 4 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPSHTMV*WSSEPD
Trigger: GTCTGGTTCCGACGACCAGCACACCATTGTGTGGGA...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCCACCTTGGAGTCAGCTaGCCCCGTGATCAAAATGCG +
Preference number: 4 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTHLGVS*PRDQNA
Trigger: CGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTG...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGTGGGCGCCGTGGCAATaGGCTTCACCCGGTTTGTGT +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRWAPWQ*ASPGLC
Trigger: ACACAAACCGGGTGAAGCGCATTGCCACGGCGCCCA...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAGAAGGTATGCACGCCTaGGGAAGGGCTCTGCCTCAT +
Preference number: 4 (lower is better)
Translates to: TGLGEAGMNQLPAPEQEPEGMHA*GRALPH
Trigger: ATGAGGCAGAGCCCTTCCGCAGGCGTGCATACCTTC...TGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGCGGTCACAGAAGGTATaGACGCCTGCGGAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLARSQKV*TPAEGL
Trigger: GAGCCCTTCCGCAGGCGTGCATACCTTCTGTGACCG...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTGCTTCATTGGCCTGCTaGTTCACACGCTCCAGGTAT +
Preference number: 4 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRAASLAC*FTRSRY
Trigger: ATACCTGGAGCGTGTGAAGCAGCAGGCCAATGAAGC...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGCTTCATTGGCCTaGTGCTTCACACGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTKASLA*CFTRSR
Trigger: CCTGGAGCGTGTGAAGCAGCAGGCCAATGAAGCCTT...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAAAGGCTTCATTGGCCTaGTGCTTCACACGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTKASLA*CFTRSR
Trigger: CCTGGAGCGTGTGAAGCAGCAGGCCAATGAAGCCTT...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGAGCACTGCTGTGGGCCTaGTCTGGGAACTTCCCTTTG +
Preference number: 4 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRALLWA*SGNFPL
Trigger: CAAAGGGAAGTTCCCAGAGCAGGCCCACAGCAGTGC...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCATATCCGTGGTGGTGTTaGAGTGCCCACAGTAGCGGA +
Preference number: 4 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPYPWWC*SAHSSG
Trigger: TCCGCTACTGTGGGCACTGCAACACCACCACGGATA...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAGTGGGTCCCACACAATaGTGTGCTGGTCGTCGGAAC +
Preference number: 4 (lower is better)
Translates to: TGLGEAGMNQLPAPEQEPVGPTQ*CAGRRN
Trigger: GTTCCGACGACCAGCACACCATTGTGTGGGACCCAC...TGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTCTTCTTGTGGTGCAGTaGGTCCCACACAATGGTGTG +
Preference number: 4 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRALLVVQ*VPHNGV
Trigger: CACACCATTGTGTGGGACCCACTGCACCACAAGAAG...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGTCACAAAGGGCCCACTaGCCCCTACTGCCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLASQRAH*PLLPGS
Trigger: ACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGA...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCCCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGGCACCCCTTGCTCTCTaGCAGCCGGAAGCCGTTGCT +
Preference number: 4 (lower is better)
Translates to: TPPRHTVGKARPSETARQAPLAL*QPEAVA
Trigger: AGCAACGGCTTCCGGCTGCCAGAGAGCAAGGGGTGC...CTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGGCCTGGGTCCACTGCTaGCAGGCGAAGGCTTCATTG +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRAWVHC*QAKASL
Trigger: CAATGAAGCCTTCGCCTGCCAGCAGTGGACCCAGGC...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGGCTTCGAAGGCGAACTaGACCACCACCACCACCAGC +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRASKAN*TTTTTS
Trigger: GCTGGTGGTGGTGGTGGTCCAGTTCGCCTTCGAAGC...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGACCAGGAAGCAGTAGCTaGGATGGGGCTGCAAGCAGT +
Preference number: 4 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRPGSSS*DGAASS
Trigger: ACTGCTTGCAGCCCCATCCCAGCTACTGCTTCCTGG...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCGTCAATCAGCACCTCTaGGTGTTTGCTGTTCTCCCG +
Preference number: 4 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTVNQHL*VFAVLP
Trigger: CGGGAGAACAGCAAACACTCAGAGGTGCTGATTGAC...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGCGGAAGCCGTTGCTGTaGAGGTGTAGGCCATTCGAC +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLARKPLL*RCRPFD
Trigger: GTCGAATGGCCTACACCTTCACAGCAACGGCTTCCG...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGAAGAAAAGGGCAGCTGTaGTGTCCCGGCCTAATGCGT +
Preference number: 4 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRRKGQL*CPGLMR
Trigger: ACGCATTAGGCCGGGACATCACAGCTGCCCTTTTCT...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGCCCACTGGCCCCTACTaGCAGGCAGTTGTTATCCTG +
Preference number: 4 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLPTGPY*QAVVIL
Trigger: CAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGG...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGGAAGGTATGCACGCCTaGGGAAGGGCTCTGCCTCAT +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLAEGMHA*GRALPH
Trigger: ATGAGGCAGAGCCCTTCCGCAGGCGTGCATACCTTC...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp TGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGCTTCATTGGCCTGCTaGTTCACACGCTCCAGGTAT +
Preference number: 4 (lower is better)
Translates to: CFSPEAAAGGLPPRGSTQASLAC*FTRSRY
Trigger: ATACCTGGAGCGTGTGAAGCAGCAGGCCAATGAAGC...CTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGATGCGTCACATGCACTaGTGTGGGCCTGCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLMRHMH*CGPALG
Trigger: TCCCAGAGCAGGCCCACAGCAGTGCATGTGACGCAT...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGATGGACTCATCCCCCTaGAGCACTCGGACGAGGTTG +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRMDSSP*STRTRL
Trigger: CAACCTCGTCCGAGTGCTGCAGGGGGATGAGTCCAT...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACCCCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGGCACAACAGGGTCGATaGCACTGGTGGCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: TPPRHTVGKARPSETARQAQQGR*HWWPGS
Trigger: GCTTCCTGGCCACCAGTGGCATCGACCCTGTTGTGC...CTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACATCACAAAGGGCCCACTaGCCCCTACTGCCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: TFRKDHRGASPGVRRVATSQRAH*PLLPGS
Trigger: ACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGA...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTGCCTGGGTCCACTGCTaGCAGGCGAAGGCTTCATTG +
Preference number: 4 (lower is better)
Translates to: PPRHTVGKARPSETARQPAWVHC*QAKASL
Trigger: CAATGAAGCCTTCGCCTGCCAGCAGTGGACCCAGGC...AGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACAAGTCAGCTGCCCCCGTaGTCAAAATGCGGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: TFRKDHRGASPGVRRVATSQLPP*SKCGLQ
Trigger: CTGGAGACCGCATTTTGATCACGGGGGCAGCTGACT...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp AAGGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGACTGTGCCATTGGGGCTaGAGGTCACATAGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: KAYVSLHTAGSRLGRRAGLCHWG*RSHRWQ
Trigger: TTGCCACCTATGTGACCTTCAGCCCCAATGGCACAG...TCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCTCTCCTCCCATGTTaGCTAGCAGCTCTGTGCCAT +
Preference number: 4 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLALLPC*LAALCH
Trigger: ATGGCACAGAGCTGCTAGTCAACATGGGAGGAGAGC...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACACGGAAGCCGTTGCTGTaGAGGTGTAGGCCATTCGAC +
Preference number: 4 (lower is better)
Translates to: TFRKDHRGASPGVRRVATRKPLL*RCRPFD
Trigger: GTCGAATGGCCTACACCTTCACAGCAACGGCTTCCG...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp TGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGAGAAATTGGCCTCCTTaGTATCCGTGGTGGTGTTGC +
Preference number: 4 (lower is better)
Translates to: CFSPEAAAGGLPPRGSTQRNWPP*YPWWCC
Trigger: GCAACACCACCACGGATATCAAGGAGGCCAATTTCT...CTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ACCCCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGGGGGCTGCAAGCAGTTaGCAATGGACTCATCCCCCT +
Preference number: 4 (lower is better)
Translates to: TPPRHTVGKARPSETARQGAASS*QWTHPP
Trigger: AGGGGGATGAGTCCATTGTCAACTGCTTGCAGCCCC...CTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGAGCAGCTTCTTGTGGTaGAGTGGGTCCCACACAATG +
Preference number: 4 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERSSFLW*SGSHTM
Trigger: CATTGTGTGGGACCCACTGCACCACAAGAAGCTGCT...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGCACCTTGGAGTCAGCTaGCCCCGTGATCAAAATGCG +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLAHLGVS*PRDQNA
Trigger: CGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTG...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGACATAATACTGCGCTaGACCGTCCGGAAGGGGCTT +
Preference number: 4 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLDIILR*TVRKGL
Trigger: AAGCCCCTTCCGGACGGTGCAGCGCAGTATTATGTC...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGGACAGCAGCTTCTTGTaGTGCAGTGGGTCCCACACA +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRDSSFL*CSGSHT
Trigger: TGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTC...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCCACATGGGCGCCGTaGCAATGCGCTTCACCCGGT +
Preference number: 4 (lower is better)
Translates to: LGTVKGQSARESESQQVAATWAP*QCASPG
Trigger: ACCGGGTGAAGCGCATTGCCACGGCGCCCATGTGGC...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAAAGTGTGCCTTCAGGTaGCAAGGGTTTAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTKCAFR*QGFREM
Trigger: CATCTCCCTAAACCCTTGCCACCTGAAGGCACACTT...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGTCACATGCACTGCTGTaGGCCTGCTCTGGGAACTTC +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRSHALL*ACSGNF
Trigger: GAAGTTCCCAGAGCAGGCCCACAGCAGTGCATGTGA...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGGCACTCGGACGAGGTTaGTGGTCTCCTTTTCCCAGA +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLAALGRG*WSPFPR
Trigger: TCTGGGAAAAGGAGACCACCAACCTCGTCCGAGTGC...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR TCA 90 bp AAGGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGTCAATCAGCACCTCTaGGTGTTTGCTGTTCTCCCG +
Preference number: 4 (lower is better)
Translates to: KAYVSLHTAGSRLGRRAGVNQHL*VFAVLP
Trigger: CGGGAGAACAGCAAACACTCAGAGGTGCTGATTGAC...TCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACAGCTCTCCTCCCATGTTaGCTAGCAGCTCTGTGCCAT +
Preference number: 4 (lower is better)
Translates to: TFRKDHRGASPGVRRVATALLPC*LAALCH
Trigger: ATGGCACAGAGCTGCTAGTCAACATGGGAGGAGAGC...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACATCCCACACAATGGTGTaGTGGTCGTCGGAACCAGAC +
Preference number: 4 (lower is better)
Translates to: TFRKDHRGASPGVRRVATSHTMV*WSSEPD
Trigger: GTCTGGTTCCGACGACCAGCACACCATTGTGTGGGA...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACAGATAAGCCCATCCTCTaGGGCGCTCCAGAACGTGTT +
Preference number: 4 (lower is better)
Translates to: TFRKDHRGASPGVRRVATDKPIL*GAPERV
Trigger: AACACGTTCTGGAGCGCCGCAGAGGATGGGCTTATC...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGCTGAGATGGAGTCCTTaGGACTTGTGCTTCGAAGGC +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLALRWSP*DLCFEG
Trigger: GCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAG...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTTATCCGTGGTGGTGTTaGAGTGCCCACAGTAGCGGA +
Preference number: 4 (lower is better)
Translates to: PPRHTVGKARPSETARQPYPWWC*SAHSSG
Trigger: TCCGCTACTGTGGGCACTGCAACACCACCACGGATA...AGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACACTGCACCTGGCCCTCTaGGCTGTCCTCGTCATCAGA +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTLHLAL*AVLVIR
Trigger: TCTGATGACGAGGACAGCGCAGAGGGCCAGGTGCAG...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR CCA 90 bp ACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCATGTGTCCTGTGTGCATaGACAGCAGCTTCTTGTGGT +
Preference number: 4 (lower is better)
Translates to: TGLGEAGMNQLPAPEQEPCVLCA*TAASCG
Trigger: ACCACAAGAAGCTGCTGTCCATGCACACAGGACACA...TGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGATGTGTCCTGTGTGCATaGACAGCAGCTTCTTGTGGT +
Preference number: 4 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRCVLCA*TAASCG
Trigger: ACCACAAGAAGCTGCTGTCCATGCACACAGGACACA...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACATTCACCCGGTTTGTGTaGTCTCCAAACATGTGGATC +
Preference number: 4 (lower is better)
Translates to: LLLPRGCSWRAAAQRKHTFTRFV*SPNMWI
Trigger: GATCCACATGTTTGGAGACCACACAAACCGGGTGAA...TGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGCAGTTGTTATCCTaGGGGTTGACGGTGAGGCAC +
Preference number: 4 (lower is better)
Translates to: PPRHTVGKARPSETARQPRQLLS*GLTVRH
Trigger: GTGCCTCACCGTCAACCCCCAGGATAACAACTGCCT...AGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCAGAGGGAGAGGTGGACTTCCACGGAGTaGCATTTTCTAGGCAAGAGG +
Preference number: 4 (lower is better)
Translates to: GMNQLPAPEQEPRGQRERWTSTE*HFLGKR
Trigger: CCTCTTGCCTAGAAAATGCCACTCCGTGGAAGTCCA...CCTCTCCCTCTGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGGCTGTAGAGCTGGATaGCCTGGGTCCACTGCTGGC +
Preference number: 4 (lower is better)
Translates to: LGTVKGQSARESESQQVAGCRAG*PGSTAG
Trigger: GCCAGCAGTGGACCCAGGCCATCCAGCTCTACAGCC...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGCACCATTTCGTCTTCTaGGATGGAGTCCTTGCGACT +
Preference number: 4 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLHHFVF*DGVLAT
Trigger: AGTCGCAAGGACTCCATCTCAGAAGACGAAATGGTG...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CCTCTCCACTGGAGGCTGAAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGACACGCCGCTGGTTGGCCTaGGATGCACCCTCCATATCT +
Preference number: 4 (lower is better)
Translates to: PLHWRLKDFEKGQSLPETRRWLA*DAPSIS
Trigger: AGATATGGAGGGTGCATCTCAGGCCAACCAGCGGCG...TGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp GCTGGGGCTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCACTGAGATGGAGTCCTTaGGACTTGTGCTTCGAAGGC +
Preference number: 4 (lower is better)
Translates to: AGAGDSQGTISPRVRKPALRWSP*DLCFEG
Trigger: GCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAG...TGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAGCCCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp TGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGTGGTCTCCAAACATGTaGATCGTCTCCTTTACCGTA +
Preference number: 4 (lower is better)
Translates to: CFSPEAAAGGLPPRGSTQWSPNM*IVSFTV
Trigger: TACGGTAAAGGAGACGATCCACATGTTTGGAGACCA...CTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CCTCTCCACTGGAGGCTGAAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGACAACAGTTGACACAGCCTaGGTGTCCCTGAAGCTCCGC +
Preference number: 4 (lower is better)
Translates to: PLHWRLKDFEKGQSLPETTVDTA*VSLKLR
Trigger: GCGGAGCTTCAGGGACACTCAGGCTGTGTCAACTGT...TGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CCTCTCCACTGGAGGCTGAAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGACACCCACTGGCCCCTACTaGCAGGCAGTTGTTATCCTG +
Preference number: 4 (lower is better)
Translates to: PLHWRLKDFEKGQSLPETPTGPY*QAVVIL
Trigger: CAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGG...TGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACAGACATAATACTGCGCTaGACCGTCCGGAAGGGGCTT +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTDIILR*TVRKGL
Trigger: AAGCCCCTTCCGGACGGTGCAGCGCAGTATTATGTC...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CCTCTCCACTGGAGGCTGAAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGACAGCAGCCGGAAGCCGTTaGTGTGAAGGTGTAGGCCAT +
Preference number: 4 (lower is better)
Translates to: PLHWRLKDFEKGQSLPETAAGSR*CEGVGH
Trigger: ATGGCCTACACCTTCACAGCAACGGCTTCCGGCTGC...TGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CCTCTCCACTGGAGGCTGAAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGACAATGCGTCACATGCACTaGTGTGGGCCTGCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: PLHWRLKDFEKGQSLPETMRHMH*CGPALG
Trigger: TCCCAGAGCAGGCCCACAGCAGTGCATGTGACGCAT...TGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACAACCACCACCACCAGCTaGCTTCTTCTCCTCACCATC +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTTTTTS*LLLLTI
Trigger: GATGGTGAGGAGAAGAAGGCAGCTGGTGGTGGTGGT...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCACACACAATGGTGTGCTaGTCGTCGGAACCAGACGCC +
Preference number: 4 (lower is better)
Translates to: LGTVKGQSARESESQQVAHTMVC*SSEPDA
Trigger: GGCGTCTGGTTCCGACGACCAGCACACCATTGTGTG...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGTGGGTCCCACACAATaGTGTGCTGGTCGTCGGAAC +
Preference number: 4 (lower is better)
Translates to: LGTVKGQSARESESQQVAVGPTQ*CAGRRN
Trigger: GTTCCGACGACCAGCACACCATTGTGTGGGACCCAC...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGATGGTCTCCAAACATGTaGATCGTCTCCTTTACCGTA +
Preference number: 4 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRWSPNM*IVSFTV
Trigger: TACGGTAAAGGAGACGATCCACATGTTTGGAGACCA...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACAAGGCAGTTGTTATCCTaGGGGTTGACGGTGAGGCAC +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTRQLLS*GLTVRH
Trigger: GTGCCTCACCGTCAACCCCCAGGATAACAACTGCCT...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCCCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGTGGACTTCCACGGAGTaGCATTTTCTAGGCAAGAGG +
Preference number: 4 (lower is better)
Translates to: TPPRHTVGKARPSETARQWTSTE*HFLGKR
Trigger: CCTCTTGCCTAGAAAATGCCACTCCGTGGAAGTCCA...CTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACAGCTGTGGGCCTGCTCTaGGAACTTCCCTTTGAAGTC +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTAVGLL*ELPFEV
Trigger: GACTTCAAAGGGAAGTTCCCAGAGCAGGCCCACAGC...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACATCACATGCACTGCTGTaGGCCTGCTCTGGGAACTTC +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTSHALL*ACSGNF
Trigger: GAAGTTCCCAGAGCAGGCCCACAGCAGTGCATGTGA...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTGCTTCGAAGGCGAACTaGACCACCACCACCACCAGC +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSASKAN*TTTTTS
Trigger: GCTGGTGGTGGTGGTGGTCCAGTTCGCCTTCGAAGC...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGTTTCGTCTTCTGAGATaGAGTCCTTGCGACTTGTGC +
Preference number: 4 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRFRLLR*SPCDLC
Trigger: GCACAAGTCGCAAGGACTCCATCTCAGAAGACGAAA...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAGGTCGATGCCACTGGTaGCCAGGAAGCAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQGRCHW*PGSSSW
Trigger: CCAGCTACTGCTTCCTGGCCACCAGTGGCATCGACC...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAACAGGGTCGATGCCACTaGTGGCCAGGAAGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQQGRCH*WPGSSS
Trigger: GCTACTGCTTCCTGGCCACCAGTGGCATCGACCCTG...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTTCATGCGCCGCTGGTTaGCCTGAGATGCACCCTCCA +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSSCAAG*PEMHPP
Trigger: TGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGA...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAACAGTTGACACAGCCTaGGTGTCCCTGAAGCTCCGC +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQTVDTA*VSLKLR
Trigger: GCGGAGCTTCAGGGACACTCAGGCTGTGTCAACTGT...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCTGTGCCATTGGGGCTaGAGGTCACATAGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: QGTISPRVRKPASCSNPHLCHWG*RSHRWQ
Trigger: TTGCCACCTATGTGACCTTCAGCCCCAATGGCACAG...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTGGGGCTGCAAGCAGTTaGCAATGGACTCATCCCCCT +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSGAASS*QWTHPP
Trigger: AGGGGGATGAGTCCATTGTCAACTGCTTGCAGCCCC...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAACCACAACTCGGCCTGTaGGGTCTTCACTCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQPQLGL*GLHSLV
Trigger: GACCAGAGAGTGAAGACCTCACAGGCCGAGTTGTGG...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTGCAGCCGGAAGCCGTTaGTGTGAAGGTGTAGGCCAT +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSAAGSR*CEGVGH
Trigger: ATGGCCTACACCTTCACAGCAACGGCTTCCGGCTGC...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAGGCCAGACGGAAGTGTaGCTTCAGGTGGCAAGGGTT +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQGQTEV*LQVARV
Trigger: AACCCTTGCCACCTGAAGGCACACTTCCGTCTGGCC...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCTGTGGGCCTGCTCTaGGAACTTCCCTTTGAAGTC +
Preference number: 4 (lower is better)
Translates to: LGTVKGQSARESESQQVAAVGLL*ELPFEV
Trigger: GACTTCAAAGGGAAGTTCCCAGAGCAGGCCCACAGC...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
3UTR CAA 72 bp CAGAGCAGCAGGGGACAGAGAAAAGCCATCACTTCTTaGGTCTTTGTGGCGGCTCAGCATGTGGGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: QSSRGQRKAITS*VFVAAQHVGGK
Trigger: CTTCCCACCCACATGCTGAGCCGCCACAAAGACCAAAGAAGTGATGGCTTTTCTCTGTCCCCTGCTGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTCATGAGGCAGGAACTTaGCAGAGAAGATATTTGCTG +
Preference number: 4 (lower is better)
Translates to: PPRHTVGKARPSETARQPHEAGT*QRRYLL
Trigger: CAGCAAATATCTTCTCTGTCAAGTTCCTGCCTCATG...AGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTAGAAAAGGGCAGCTGTaGTGTCCCGGCCTAATGCGT +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSRKGQL*CPGLMR
Trigger: ACGCATTAGGCCGGGACATCACAGCTGCCCTTTTCT...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAAGCAGCTTCTTGTGGTaGAGTGGGTCCCACACAATG +
Preference number: 4 (lower is better)
Translates to: LGTVKGQSARESESQQVASSFLW*SGSHTM
Trigger: CATTGTGTGGGACCCACTGCACCACAAGAAGCTGCT...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTGATAAGCCCATCCTCTaGGGCGCTCCAGAACGTGTT +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSDKPIL*GAPERV
Trigger: AACACGTTCTGGAGCGCCGCAGAGGATGGGCTTATC...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTACCACCACCACCAGCTaGCTTCTTCTCCTCACCATC +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSTTTTS*LLLLTI
Trigger: GATGGTGAGGAGAAGAAGGCAGCTGGTGGTGGTGGT...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTGACAGCAGCTTCTTGTaGTGCAGTGGGTCCCACACA +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSDSSFL*CSGSHT
Trigger: TGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTC...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGCTCATGCTCTTTCTGTaGTTGTGGATCATTCGAATG +
Preference number: 4 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLALMLFL*LWIIRM
Trigger: CATTCGAATGATCCACAACCACAGAAAGAGCATGAG...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CCTCTCCACTGGAGGCTGAAGGATTTTGAGAAGGGCCAGAGCCTTCCAGAGACACACCATTTCGTCTTCTaGGATGGAGTCCTTGCGACT +
Preference number: 4 (lower is better)
Translates to: PLHWRLKDFEKGQSLPETHHFVF*DGVLAT
Trigger: AGTCGCAAGGACTCCATCTCAGAAGACGAAATGGTG...TGTCTCTGGAAGGCTCTGGCCCTTCTCAAAATCCTTCAGCCTCCAGTGGAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR TCA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACAGAAATTGGCCTCCTTaGTATCCGTGGTGGTGTTGC +
Preference number: 4 (lower is better)
Translates to: QGTISPRVRKPASCSNPHRNWPP*YPWWCC
Trigger: GCAACACCACCACGGATATCAAGGAGGCCAATTTCT...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTGCTGTGTGTCCTGTGTaGATGGACAGCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSAVCPV*MDSSFL
Trigger: CAAGAAGCTGCTGTCCATGCACACAGGACACACAGC...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACATTCACCCGGTTTGTGTaGTCTCCAAACATGTGGATC +
Preference number: 4 (lower is better)
Translates to: RHTVGKARPSETARQPRTFTRFV*SPNMWI
Trigger: GATCCACATGTTTGGAGACCACACAAACCGGGTGAA...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACACAAGAGGAAGGTATATaGCCGTTGCTTGTAAGTCAA +
Preference number: 4 (lower is better)
Translates to: TFRKDHRGASPGVRRVATQEEGI*PLLVSQ
Trigger: TTGACTTACAAGCAACGGCCATATACCTTCCTCTTG...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAAGTGTGCCTTCAGGTaGCAAGGGTTTAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQKCAFR*QGFREM
Trigger: CATCTCCCTAAACCCTTGCCACCTGAAGGCACACTT...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACTTTCGTCTTCTGAGATaGAGTCCTTGCGACTTGTGC +
Preference number: 4 (lower is better)
Translates to: QGTISPRVRKPASCSNPHFRLLR*SPCDLC
Trigger: GCACAAGTCGCAAGGACTCCATCTCAGAAGACGAAA...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACTGTACTGAGCATTGCTaGCAAAGAAATTGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: QGTISPRVRKPASCSNPHCTEHC*QRNWPP
Trigger: AGGAGGCCAATTTCTTTGGCAGCAATGCTCAGTACA...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR TCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAACATGAGGCAGGAACTTaGCAGAGAAGATATTTGCTG +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQHEAGT*QRRYLL
Trigger: CAGCAAATATCTTCTCTGTCAAGTTCCTGCCTCATG...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR GCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAACAATGTACTGAGCATTaGTGCCAAAGAAATTGGCCT +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQQCTEH*CQRNWP
Trigger: AGGCCAATTTCTTTGGCAGCAATGCTCAGTACATTG...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR CCA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTCTCATGCTCTTTCTGTaGTTGTGGATCATTCGAATG +
Preference number: 4 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSLMLFL*LWIIRM
Trigger: CATTCGAATGATCCACAACCACAGAAAGAGCATGAG...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CCA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAACAAGAGGAAGGTATATaGCCGTTGCTTGTAAGTCAA +
Preference number: 4 (lower is better)
Translates to: TISPRVRKPASCSNPHPQQEEGI*PLLVSQ
Trigger: TTGACTTACAAGCAACGGCCATATACCTTCCTCTTG...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp TGCTTCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGGCTGATGCACCCCTaGCTCTCTGGCAGCCGGAAG +
Preference number: 5 (lower is better)
Translates to: CFSPEAAAGGLPPRGSTQGLMHP*LSGSRK
Trigger: CTTCCGGCTGCCAGAGAGCAAGGGGTGCATCAGCCC...CTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGAAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCTTGACGGTGAGGCACTaGGCCTCCACCATCGGGCCA +
Preference number: 5 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTLTVRH*ASTIGP
Trigger: TGGCCCGATGGTGGAGGCCAAGTGCCTCACCGTCAA...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCATTGACGGTGAGGCACTaGGCCTCCACCATCGGGCCA +
Preference number: 5 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPLTVRH*ASTIGP
Trigger: TGGCCCGATGGTGGAGGCCAAGTGCCTCACCGTCAA...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp TCTCCCCAGAGGCTGCAGCTGGAGGGCTGCCGCCCAGAGGAAGCACACAGGGCTTTTAGGGAGATGGCCTaGAGGCAGTCCCGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: SPQRLQLEGCRPEEAHRAFREMA*RQSRRA
Trigger: TGCCCTCCGGGACTGCCTCAAGGCCATCTCCCTAAA...AGCCCTGTGTGCTTCCTCTGGGCGGCAGCCCTCCAGCTGCAGCCTCTGGGGAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGTCGTGGACGTGCACCTaGGAGTCAGCTGCCCCCGTG +
Preference number: 5 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLSWTCT*ESAAPV
Trigger: CACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGA...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp AAGGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGGGCTGATGCACCCCTaGCTCTCTGGCAGCCGGAAG +
Preference number: 5 (lower is better)
Translates to: KAYVSLHTAGSRLGRRAGGLMHP*LSGSRK
Trigger: CTTCCGGCTGCCAGAGAGCAAGGGGTGCATCAGCCC...TCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 90 bp CTCACAAAGGGCCCACTGGCCCCTACTGCCAGGCAGTTGTTATCCTaGGGGTTGACGGTGAGGCACTTGGCCTCCACCATCGGGCCACAG +
Preference number: 5 (lower is better)
Translates to: LTKGPLAPTARQLLS*GLTVRHLASTIGPQ
Trigger: CTGTGGCCCGATGGTGGAGGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGAAGCACTCGGACGAGGTaGGTGGTCTCCTTTTCCCAG +
Preference number: 5 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRSTRTR*VVSFSQ
Trigger: CTGGGAAAAGGAGACCACCAACCTCGTCCGAGTGCT...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS TCA 90 bp AGCTCCGCCTCCAGGCCCAGCCGTCGGATAAAGGGGTCTGTGACATaGTATCGCCGTTCAAAGCTCAGGGCACCCCGCTCCTTGACTTGC +
Preference number: 5 (lower is better)
Translates to: SSASRPSRRIKGSVT*YRRSKLRAPRSLTC
Trigger: GCAAGTCAAGGAGCGGGGTGCCCTGAGCTTTGAACGGCGATATCATGTCACAGACCCCTTTATCCGACGGCTGGGCCTGGAGGCGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 90 bp GGGCTGATGCACCCCTTGCTCTCTGGCAGCCGGAAGCCGTTGCTGTaGAGGTGTAGGCCATTCGACACGCCGTTGGACACCCCGTTAGTA +
Preference number: 5 (lower is better)
Translates to: GLMHPLLSGSRKPLL*RCRPFDTPLDTPLV
Trigger: TACTAACGGGGTGTCCAACGGCGTGTCGAATGGCCTACACCTTCACAGCAACGGCTTCCGGCTGCCAGAGAGCAAGGGGTGCATCAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 90 bp GACGGAAGTGTGCCTTCAGGTGGCAAGGGTTTAGGGAGATGGCCTTaGGGCAGTCCCGGAGGGCATCATAGTGGTCCCCGTCCCACTTGC +
Preference number: 5 (lower is better)
Translates to: DGSVPSGGKGLGRWP*GSPGGHHSGPRPTC
Trigger: GCAAGTGGGACGGGGACCACTATGATGCCCTCCGGGACTGCCTCAAGGCCATCTCCCTAAACCCTTGCCACCTGAAGGCACACTTCCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 90 bp CACTGGTGGCCAGGAAGCAGTAGCTGGGATGGGGCTGCAAGCAGTTaGCAATGGACTCATCCCCCTGCAGCACTCGGACGAGGTTGGTGG +
Preference number: 5 (lower is better)
Translates to: HWWPGSSSWDGAASS*QWTHPPAALGRGWW
Trigger: CCACCAACCTCGTCCGAGTGCTGCAGGGGGATGAGTCCATTGTCAACTGCTTGCAGCCCCATCCCAGCTACTGCTTCCTGGCCACCAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp TGCGCTGCACCGTCCGGAAGGGGCTTCTGTCGGTCACAGAAGGTATaGACGCCTGCGGAAGGGCTCTGCCTCATGCTCTTTCTGTGGTTG +
Preference number: 5 (lower is better)
Translates to: CAAPSGRGFCRSQKV*TPAEGLCLMLFLWL
Trigger: CAACCACAGAAAGAGCATGAGGCAGAGCCCTTCCGCAGGCGTGCATACCTTCTGTGACCGACAGAAGCCCCTTCCGGACGGTGCAGCGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp CTTCACTCTCTGGTCGTGGGTTCCACAGTCGCACAACAGGGTCGATaGCACTGGTGGCCAGGAAGCAGTAGCTGGGATGGGGCTGCAAGC +
Preference number: 5 (lower is better)
Translates to: LHSLVVGSTVAQQGR*HWWPGSSSWDGAAS
Trigger: GCTTGCAGCCCCATCCCAGCTACTGCTTCCTGGCCACCAGTGGCATCGACCCTGTTGTGCGACTGTGGAACCCACGACCAGAGAGTGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGATGGACAGCAGCTTCTaGTGGTGCAGTGGGTCCCAC +
Preference number: 5 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLAMDSSF*WCSGSH
Trigger: GTGGGACCCACTGCACCACAAGAAGCTGCTGTCCAT...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCAAGGGGCCATCTGGGAACTTCCCTTaGAAGTCATCCAGGCACTCC +
Preference number: 5 (lower is better)
Translates to: GGGWHEPTPGSRAGTKGPSGNFP*KSSRHS
Trigger: GGAGTGCCTGGATGACTTCAAAGGGAAGTTCCCAGA...TGGCCCCTTGGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CCCGGCGCCCCCGCTGCTCAGGCCTGTGATCCGATAGCCCATGTCCAGCAGCATTCCTCACCATCACTTTaGGAGAAAAGGGCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: PGAPAAQACDPIAHVQQHSSPSL*EKRAAV
Trigger: CACAGCTGCCCTTTTCTCCAAAAGTGATGGTGAGGA...ATGCTGCTGGACATGGGCTATCGGATCACAGGCCTGAGCAGCGGGGGCGCCGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
CDS TCA 90 bp AACCAGACGCCAGCAGGTCTCCTTTCTCATTCCACTCCAGACAGTTaGCACAGCCTGAGTGTCCCTGAAGCTCCGCCTCCAGGCCCAGCC +
Preference number: 5 (lower is better)
Translates to: NQTPAGLLSHSTPDS*HSLSVPEAPPPGPA
Trigger: GGCTGGGCCTGGAGGCGGAGCTTCAGGGACACTCAGGCTGTGTCAACTGTCTGGAGTGGAATGAGAAAGGAGACCTGCTGGCGTCTGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 90 bp AGCATCGCCTCCAGGGGGTTGGCATTCATGCGCCGCTGGTTGGCCTaGGATGCACCCTCCATATCTTCCACAACTCGGCCTGTGAGGTCT +
Preference number: 5 (lower is better)
Translates to: SIASRGLAFMRRWLA*DAPSISSTTRPVRS
Trigger: AGACCTCACAGGCCGAGTTGTGGAAGATATGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGATGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS GCA 90 bp CGCCTCCAGGGGGTTGGCATTCATGCGCCGCTGGTTGGCCTGAGATaGACCCTCCATATCTTCCACAACTCGGCCTGTGAGGTCTTCACT +
Preference number: 5 (lower is better)
Translates to: RLQGVGIHAPLVGLR*TLHIFHNSACEVFT
Trigger: AGTGAAGACCTCACAGGCCGAGTTGTGGAAGATATGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS CCA 90 bp TTCAGTTCAAAGAGGCACCGGGCCAGACGGAAGTGTGCCTTCAGGTaGCAAGGGTTTAGGGAGATGGCCTTGAGGCAGTCCCGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: FSSKRHRARRKCAFR*QGFREMALRQSRRA
Trigger: TGCCCTCCGGGACTGCCTCAAGGCCATCTCCCTAAACCCTTGCCACCTGAAGGCACACTTCCGTCTGGCCCGGTGCCTCTTTGAACTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GCTGGGGCTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCATTGTTATCCTGGGGGTaGACGGTGAGGCACTTGGCC +
Preference number: 5 (lower is better)
Translates to: AGAGDSQGTISPRVRKPALLSWG*TVRHLA
Trigger: GGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAA...TGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAGCCCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GCGGAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGTGCTCTCCTCCCATGTaGACTAGCAGCTCTGTGCCA +
Preference number: 5 (lower is better)
Translates to: AERVQRVLRKSHLSRVGLCSPPM*TSSSVP
Trigger: TGGCACAGAGCTGCTAGTCAACATGGGAGGAGAGCA...CAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTCCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGTGCTCTCCTCCCATGTaGACTAGCAGCTCTGTGCCA +
Preference number: 5 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLACSPPM*TSSSVP
Trigger: TGGCACAGAGCTGCTAGTCAACATGGGAGGAGAGCA...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CACAGGGCTGGGGGAGGCTGGCATGAACCAACTCCCGGCTCCAGAGCAGGAACCTCCTCACCATCACTTTaGGAGAAAAGGGCAGCTGTG +
Preference number: 5 (lower is better)
Translates to: HRAGGGWHEPTPGSRAGTSSPSL*EKRAAV
Trigger: CACAGCTGCCCTTTTCTCCAAAAGTGATGGTGAGGA...GGTTCCTGCTCTGGAGCCGGGAGTTGGTTCATGCCAGCCTCCCCCAGCCCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGATCTGAGATGGAGTCCTaGCGACTTGTGCTTCGAAGG +
Preference number: 5 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRSEMES*RLVLRR
Trigger: CCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAGA...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CCACCCCGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTTGGGGCTGCAAGCAGTaGACAATGGACTCATCCCCC +
Preference number: 5 (lower is better)
Translates to: PPRHTVGKARPSETARQPWGCKQ*TMDSSP
Trigger: GGGGGATGAGTCCATTGTCAACTGCTTGCAGCCCCA...AGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACGGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp GATAGCCCATGTCCAGCAGCATCGCCTCCAGGGGGTTGGCATTCATaGGCCGCTGGTTGGCCTGAGATGCACCCTCCATATCTTCCACAA +
Preference number: 5 (lower is better)
Translates to: DSPCPAASPPGGWHS*AAGWPEMHPPYLPQ
Trigger: TTGTGGAAGATATGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGATGCTGCTGGACATGGGCTATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS CCA 90 bp TGCTGTGTGTCCTGTGTGCATGGACAGCAGCTTCTTGTGGTGCAGTaGGTCCCACACAATGGTGTGCTGGTCGTCGGAACCAGACGCCAG +
Preference number: 5 (lower is better)
Translates to: CCVSCVHGQQLLVVQ*VPHNGVLVVGTRRQ
Trigger: CTGGCGTCTGGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCATGCACACAGGACACACAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp ATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAGTTCGTGGACGTGCACCTaGGAGTCAGCTGCCCCCGTG +
Preference number: 5 (lower is better)
Translates to: ISPRVRKPASCSNPHPQSSWTCT*ESAAPV
Trigger: CACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGA...ACTTTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACATTTAGGGAGATGGCCTaGAGGCAGTCCCGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: RHTVGKARPSETARQPRTFREMA*RQSRRA
Trigger: TGCCCTCCGGGACTGCCTCAAGGCCATCTCCCTAAA...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp ACCTTCCGGAAAGACCACAGGGGAGCTAGCCCGGGAGTCAGGAGAGTGGCAACATGGAGTCCTTGCGACTaGTGCTTCGAAGGCGAACTG +
Preference number: 5 (lower is better)
Translates to: TFRKDHRGASPGVRRVATWSPCD*CFEGEL
Trigger: CAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCA...TGTTGCCACTCTCCTGACTCCCGGGCTAGCTCCCCTGTGGTCTTTCCGGAAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp ACCCTCACTCTCCTGGGAGCAGAGCAACAAAAGGCTCGGCTCCTGCCCCAGAGGTCTGAGATGGAGTCCTaGCGACTTGTGCTTCGAAGG +
Preference number: 5 (lower is better)
Translates to: TLTLLGAEQQKARLLPQRSEMES*RLVLRR
Trigger: CCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAGA...CCTCTGGGGCAGGAGCCGAGCCTTTTGTTGCTCTGCTCCCAGGAGAGTGAGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAATCGCCTCCAGGGGGTaGGCATTCATGCGCCGCTGG +
Preference number: 5 (lower is better)
Translates to: TISPRVRKPASCSNPHPQIASRG*AFMRRW
Trigger: CCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGAT...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS-3UTR CAA 90 bp GGCTTATGTGTCTCTCCACACTGCAGGGTCCAGGCTAGGCAGGCGGGCGGGAGACTCCTGCCAAAGAAATaGGCCTCCTTGATATCCGTG +
Preference number: 5 (lower is better)
Translates to: GLCVSPHCRVQARQAGGRLLPKK*ASLISV
Trigger: CACGGATATCAAGGAGGCCAATTTCTTTGGCAGGAG...TCTCCCGCCCGCCTGCCTAGCCTGGACCCTGCAGTGTGGAGAGACACATAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
CDS GCA 90 bp CATTCGAATGTCATAGAGCCTCACAAAGGGCCCACTGGCCCCTACTaGCAGGCAGTTGTTATCCTGGGGGTTGACGGTGAGGCACTTGGC +
Preference number: 5 (lower is better)
Translates to: HSNVIEPHKGPTGPY*QAVVILGVDGEALG
Trigger: GCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGAGGCTCTATGACATTCGAATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp ACCGTCCGGAAGGGGCTTCTGTCGGTCACAGAAGGTATGCACGCCTaGGGAAGGGCTCTGCCTCATGCTCTTTCTGTGGTTGTGGATCAT +
Preference number: 5 (lower is better)
Translates to: TVRKGLLSVTEGMHA*GRALPHALSVVVDH
Trigger: ATGATCCACAACCACAGAAAGAGCATGAGGCAGAGCCCTTCCGCAGGCGTGCATACCTTCTGTGACCGACAGAAGCCCCTTCCGGACGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 90 bp GACAGCAGCTTCTTGTGGTGCAGTGGGTCCCACACAATGGTGTGCTaGTCGTCGGAACCAGACGCCAGCAGGTCTCCTTTCTCATTCCAC +
Preference number: 5 (lower is better)
Translates to: DSSFLWCSGSHTMVC*SSEPDASRSPFSFH
Trigger: GTGGAATGAGAAAGGAGACCTGCTGGCGTCTGGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 90 bp TGTGCATGGACAGCAGCTTCTTGTGGTGCAGTGGGTCCCACACAATaGTGTGCTGGTCGTCGGAACCAGACGCCAGCAGGTCTCCTTTCT +
Preference number: 5 (lower is better)
Translates to: CAWTAASCGAVGPTQ*CAGRRNQTPAGLLS
Trigger: AGAAAGGAGACCTGCTGGCGTCTGGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCATGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACATTGTTATCCTGGGGGTaGACGGTGAGGCACTTGGCC +
Preference number: 5 (lower is better)
Translates to: RHTVGKARPSETARQPRTLLSWG*TVRHLA
Trigger: GGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAA...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 90 bp GGTTGGCCTGAGATGCACCCTCCATATCTTCCACAACTCGGCCTGTaGGGTCTTCACTCTCTGGTCGTGGGTTCCACAGTCGCACAACAG +
Preference number: 5 (lower is better)
Translates to: GWPEMHPPYLPQLGL*GLHSLVVGSTVAQQ
Trigger: CTGTTGTGCGACTGTGGAACCCACGACCAGAGAGTGAAGACCTCACAGGCCGAGTTGTGGAAGATATGGAGGGTGCATCTCAGGCCAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp ATGGACAGCAGCTTCTTGTGGTGCAGTGGGTCCCACACAATGGTGTaGTGGTCGTCGGAACCAGACGCCAGCAGGTCTCCTTTCTCATTC +
Preference number: 5 (lower is better)
Translates to: MDSSFLWCSGSHTMV*WSSEPDASRSPFSF
Trigger: GAATGAGAAAGGAGACCTGCTGGCGTCTGGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp CGTCTCCTTTACCGTAAGGTCGTGGACGTGCACCTTGGAGTCAGCTaGCCCCGTGATCAAAATGCGGTCTCCAGCATGAGGCAGGAACTT +
Preference number: 5 (lower is better)
Translates to: RLLYRKVVDVHLGVS*PRDQNAVSSMRQEL
Trigger: AAGTTCCTGCCTCATGCTGGAGACCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp AGCTCCGTTCCCGTAGCACCATTTCGTCTTCTGAGATGGAGTCCTTaGGACTTGTGCTTCGAAGGCGAACTGGACCACCACCACCACCAG +
Preference number: 5 (lower is better)
Translates to: SSVPVAPFRLLRWSP*DLCFEGELDHHHHQ
Trigger: CTGGTGGTGGTGGTGGTCCAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAGAAGACGAAATGGTGCTACGGGAACGGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 90 bp GCCGTGGCAATGCGCTTCACCCGGTTTGTGTGGTCTCCAAACATGTaGATCGTCTCCTTTACCGTAAGGTCGTGGACGTGCACCTTGGAG +
Preference number: 5 (lower is better)
Translates to: AVAMRFTRFVWSPNM*IVSFTVRSWTCTLE
Trigger: CTCCAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACGATCCACATGTTTGGAGACCACACAAACCGGGTGAAGCGCATTGCCACGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 90 bp TTAGGCCACATGGGCGCCGTGGCAATGCGCTTCACCCGGTTTGTGTaGTCTCCAAACATGTGGATCGTCTCCTTTACCGTAAGGTCGTGG +
Preference number: 5 (lower is better)
Translates to: LGHMGAVAMRFTRFV*SPNMWIVSFTVRSW
Trigger: CCACGACCTTACGGTAAAGGAGACGATCCACATGTTTGGAGACCACACAAACCGGGTGAAGCGCATTGCCACGGCGCCCATGTGGCCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACATGGACAGCAGCTTCTaGTGGTGCAGTGGGTCCCAC +
Preference number: 5 (lower is better)
Translates to: QGTISPRVRKPASCSNPHMDSSF*WCSGSH
Trigger: GTGGGACCCACTGCACCACAAGAAGCTGCTGTCCAT...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCTACTGCCAGGCAGTaGTTATCCTGGGGGTTGACG +
Preference number: 5 (lower is better)
Translates to: QGTISPRVRKPASCSNPHPTARQ*LSWGLT
Trigger: CGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGG...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp GAGAGGGTGCAAAGGGTCCTTAGGAAGAGCCACCTCAGCAGGGTAGGCCTGGCGAAGAAATTGGCCTCCTaGATATCCGTGGTGGTGTTG +
Preference number: 5 (lower is better)
Translates to: ERVQRVLRKSHLSRVGLAKKLAS*ISVVVL
Trigger: CAACACCACCACGGATATCAAGGAGGCCAATTTCTT...CGCCAGGCCTACCCTGCTGAGGTGGCTCTTCCTAAGGACCCTTTGCACCCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACTGGGGCTGCAAGCAGTaGACAATGGACTCATCCCCC +
Preference number: 5 (lower is better)
Translates to: QGTISPRVRKPASCSNPHWGCKQ*TMDSSP
Trigger: GGGGGATGAGTCCATTGTCAACTGCTTGCAGCCCCA...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACAGCACTCGGACGAGGTaGGTGGTCTCCTGCCAAAGA +
Preference number: 5 (lower is better)
Translates to: QGTISPRVRKPASCSNPHSTRTR*VVSCQR
Trigger: TCTTTGGCAGGAGACCACCAACCTCGTCCGAGTGCT...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
CDS TCA 90 bp CTGCCTTCTTCTCCTCACCATCACTTTTGGAGAAAAGGGCAGCTGTaGTGTCCCGGCCTAATGCGTCACATGCACTGCTGTGGGCCTGCT +
Preference number: 5 (lower is better)
Translates to: LPSSPHHHFWRKGQL*CPGLMRHMHCCGPA
Trigger: AGCAGGCCCACAGCAGTGCATGTGACGCATTAGGCCGGGACATCACAGCTGCCCTTTTCTCCAAAAGTGATGGTGAGGAGAAGAAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 90 bp GTGTGGTCTCCAAACATGTGGATCGTCTCCTTTACCGTAAGGTCGTaGACGTGCACCTTGGAGTCAGCTGCCCCCGTGATCAAAATGCGG +
Preference number: 5 (lower is better)
Translates to: VWSPNMWIVSFTVRS*TCTLESAAPVIKMR
Trigger: CCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACGATCCACATGTTTGGAGACCACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAACCTACTGCCAGGCAGTaGTTATCCTGGGGGTTGACG +
Preference number: 5 (lower is better)
Translates to: TISPRVRKPASCSNPHPQPTARQ*LSWGLT
Trigger: CGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGG...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CGTCACACTGTAGGAAAGGCAAGGCCCTCAGAGACAGCGAGACAGCCTAGGACATCTGGGAACTTCCCTTaGAAGTCATCCAGGCACTCC +
Preference number: 5 (lower is better)
Translates to: RHTVGKARPSETARQPRTSGNFP*KSSRHS
Trigger: GGAGTGCCTGGATGACTTCAAAGGGAAGTTCCCAGA...TGTCCTAGGCTGTCTCGCTGTCTCTGAGGGCCTTGCCTTTCCTACAGTGTGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCATGGAGTCCTTGCGACTaGTGCTTCGAAGGCGAACTG +
Preference number: 5 (lower is better)
Translates to: LGTVKGQSARESESQQVAWSPCD*CFEGEL
Trigger: CAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCA...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 90 bp ACTCGGACGAGGTTGGTGGTCTCCTGCCAAAGAAATTGGCCTCCTTaGTATCCGTGGTGGTGTTGCAGTGCCCACAGTAGCGGAACTGAT +
Preference number: 5 (lower is better)
Translates to: TRTRLVVSCQRNWPP*YPWWCCSAHSSGTD
Trigger: ATCAGTTCCGCTACTGTGGGCACTGCAACACCACCACGGATATCAAGGAGGCCAATTTCTTTGGCAGGAGACCACCAACCTCGTCCGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
CDS GCA 90 bp ATATTTGCTGTGTGTCCTGTGTGCATGGACAGCAGCTTCTTGTGGTaGAGTGGGTCCCACACAATGGTGTGCTGGTCGTCGGAACCAGAC +
Preference number: 5 (lower is better)
Translates to: IFAVCPVCMDSSFLW*SGSHTMVCWSSEPD
Trigger: GTCTGGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCATGCACACAGGACACACAGCAAATAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 90 bp TCTCCAAACATGTGGATCGTCTCCTTTACCGTAAGGTCGTGGACGTaGACCTTGGAGTCAGCTGCCCCCGTGATCAAAATGCGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: SPNMWIVSFTVRSWT*TLESAAPVIKMRSP
Trigger: TGGAGACCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACGATCCACATGTTTGGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 90 bp GATAGTCGTAGCTCCGTTCCCGTAGCACCATTTCGTCTTCTGAGATaGAGTCCTTGCGACTTGTGCTTCGAAGGCGAACTGGACCACCAC +
Preference number: 5 (lower is better)
Translates to: DSRSSVPVAPFRLLR*SPCDLCFEGELDHH
Trigger: GTGGTGGTCCAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAGAAGACGAAATGGTGCTACGGGAACGGAGCTACGACTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CTGGGGACAGTCAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCATGCGCTTCACCCGGTTaGTGTGGTCTCCAAACATGT +
Preference number: 5 (lower is better)
Translates to: LGTVKGQSARESESQQVACASPG*CGLQTC
Trigger: ACATGTTTGGAGACCACACAAACCGGGTGAAGCGCA...TGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTGACTGTCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp CAAGGGACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACTTGCTGCCAAAGAAATaGGCCTCCTTGATATCCGTG +
Preference number: 5 (lower is better)
Translates to: QGTISPRVRKPASCSNPHLLPKK*ASLISV
Trigger: CACGGATATCAAGGAGGCCAATTTCTTTGGCAGCAA...GTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGTCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS CCA 90 bp TTCGACACGCCGTTGGACACCCCGTTAGTAGACATCTTGCCGTTCTaGACTTCCACGGAGTGGCATTTTCTAGGCAAGAGGAAGGTATAT +
Preference number: 5 (lower is better)
Translates to: FDTPLDTPLVDILPF*TSTEWHFLGKRKVY
Trigger: ATATACCTTCCTCTTGCCTAGAAAATGCCACTCCGTGGAAGTCCAGAACGGCAAGATGTCTACTAACGGGGTGTCCAACGGCGTGTCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS-3UTR CAA 90 bp ACAATCAGCCCGAGAGTCAGAAAGCCAGCAAGTTGCAGCAATCCCCACCCACAAAAGAAATTGGCCTCCTaGATATCCGTGGTGGTGTTG +
Preference number: 5 (lower is better)
Translates to: TISPRVRKPASCSNPHPQKKLAS*ISVVVL
Trigger: CAACACCACCACGGATATCAAGGAGGCCAATTTCTT...TTGTGGGTGGGGATTGCTGCAACTTGCTGGCTTTCTGACTCTCGGGCTGATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp TGGGTCCACTGCTGGCAGGCGAAGGCTTCATTGGCCTaGTGCTTCACACGCTCCAGGTATGGGGGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: WVHCWQAKASLA*CFTRSRYGGSS
Trigger: GGAGCTGCCCCCATACCTGGAGCGTGTGAAGCAGCAGGCCAATGAAGCCTTCGCCTGCCAGCAGTGGACCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp GGCCCACTGGCCCCTACTGCCAGGCAGTTGTTATCCTaGGGGTTGACGGTGAGGCACTTGGCCTCCACCATC +
Preference number: 6 (lower is better)
Translates to: GPLAPTARQLLS*GLTVRHLASTI
Trigger: GATGGTGGAGGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp CTGGCCCCTACTGCCAGGCAGTTGTTATCCTGGGGGTaGACGGTGAGGCACTTGGCCTCCACCATCGGGCCA +
Preference number: 6 (lower is better)
Translates to: LAPTARQLLSWG*TVRHLASTIGP
Trigger: TGGCCCGATGGTGGAGGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 72 bp CACCCCTTGCTCTCTGGCAGCCGGAAGCCGTTGCTGTaGAGGTGTAGGCCATTCGACACGCCGTTGGACACC +
Preference number: 6 (lower is better)
Translates to: HPLLSGSRKPLL*RCRPFDTPLDT
Trigger: GGTGTCCAACGGCGTGTCGAATGGCCTACACCTTCACAGCAACGGCTTCCGGCTGCCAGAGAGCAAGGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp CTCCCGAAGGTCATACTGGCGGATAAGCCCATCCTCTaGGGCGCTCCAGAACGTGTTAGGCCACATGGGCGC +
Preference number: 6 (lower is better)
Translates to: LPKVILADKPIL*GAPERVRPHGR
Trigger: GCGCCCATGTGGCCTAACACGTTCTGGAGCGCCGCAGAGGATGGGCTTATCCGCCAGTATGACCTTCGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp GTGGGTTCCACAGTCGCACAACAGGGTCGATGCCACTaGTGGCCAGGAAGCAGTAGCTGGGATGGGGCTGCA +
Preference number: 6 (lower is better)
Translates to: VGSTVAQQGRCH*WPGSSSWDGAA
Trigger: TGCAGCCCCATCCCAGCTACTGCTTCCTGGCCACCAGTGGCATCGACCCTGTTGTGCGACTGTGGAACCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp GATAGCCCATGTCCAGCAGCATCGCCTCCAGGGGGTTaGCATTCATGCGCCGCTGGTTGGCCTGAGATGCAC +
Preference number: 6 (lower is better)
Translates to: DSPCPAASPPGG*HSCAAGWPEMH
Trigger: GTGCATCTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGATGCTGCTGGACATGGGCTATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS CAA 72 bp CTCACAAAGGGCCCACTGGCCCCTACTGCCAGGCAGTaGTTATCCTGGGGGTTGACGGTGAGGCACTTGGCC +
Preference number: 6 (lower is better)
Translates to: LTKGPLAPTARQ*LSWGLTVRHLA
Trigger: GGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 90 bp AAGGGCCCACTGGCCCCTACTGCCAGGCAGTTGTTATCCTGGGGGTaGACGGTGAGGCACTTGGCCTCCACCATCGGGCCACAGTATTCT +
Preference number: 6 (lower is better)
Translates to: KGPLAPTARQLLSWG*TVRHLASTIGPQYS
Trigger: AGAATACTGTGGCCCGATGGTGGAGGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 72 bp TCCAGGCCCAGCCGTCGGATAAAGGGGTCTGTGACATaGTATCGCCGTTCAAAGCTCAGGGCACCCCGCTCC +
Preference number: 6 (lower is better)
Translates to: SRPSRRIKGSVT*YRRSKLRAPRS
Trigger: GGAGCGGGGTGCCCTGAGCTTTGAACGGCGATATCATGTCACAGACCCCTTTATCCGACGGCTGGGCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 72 bp GTGCCTTCAGGTGGCAAGGGTTTAGGGAGATGGCCTTaGGGCAGTCCCGGAGGGCATCATAGTGGTCCCCGT +
Preference number: 6 (lower is better)
Translates to: VPSGGKGLGRWP*GSPGGHHSGPR
Trigger: ACGGGGACCACTATGATGCCCTCCGGGACTGCCTCAAGGCCATCTCCCTAAACCCTTGCCACCTGAAGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp CCGTCCGGAAGGGGCTTCTGTCGGTCACAGAAGGTATaGACGCCTGCGGAAGGGCTCTGCCTCATGCTCTTT +
Preference number: 6 (lower is better)
Translates to: PSGRGFCRSQKV*TPAEGLCLMLF
Trigger: AAAGAGCATGAGGCAGAGCCCTTCCGCAGGCGTGCATACCTTCTGTGACCGACAGAAGCCCCTTCCGGACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp TGTCCAGCAGCATCGCCTCCAGGGGGTTGGCATTCATaGGCCGCTGGTTGGCCTGAGATGCACCCTCCATAT +
Preference number: 6 (lower is better)
Translates to: CPAASPPGGWHS*AAGWPEMHPPY
Trigger: ATATGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGATGCTGCTGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS TCA 72 bp GGTCGTGGACGTGCACCTTGGAGTCAGCTGCCCCCGTaGTCAAAATGCGGTCTCCAGCATGAGGCAGGAACT +
Preference number: 6 (lower is better)
Translates to: GRGRAPWSQLPP*SKCGLQHEAGT
Trigger: AGTTCCTGCCTCATGCTGGAGACCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 72 bp TCCAGGGGGTTGGCATTCATGCGCCGCTGGTTGGCCTaGGATGCACCCTCCATATCTTCCACAACTCGGCCT +
Preference number: 6 (lower is better)
Translates to: SRGLAFMRRWLA*DAPSISSTTRP
Trigger: AGGCCGAGTTGTGGAAGATATGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS GCA 72 bp AGCTTCTTGTGGTGCAGTGGGTCCCACACAATGGTGTaGTGGTCGTCGGAACCAGACGCCAGCAGGTCTCCT +
Preference number: 6 (lower is better)
Translates to: SFLWCSGSHTMV*WSSEPDASRSP
Trigger: AGGAGACCTGCTGGCGTCTGGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp GTCATAGAGCCTCACAAAGGGCCCACTGGCCCCTACTaGCAGGCAGTTGTTATCCTGGGGGTTGACGGTGAG +
Preference number: 6 (lower is better)
Translates to: VIEPHKGPTGPY*QAVVILGVDGE
Trigger: CTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGAGGCTCTATGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp CTTCACCGGCAGGTGACCTGCGACATAATACTGCGCTaGACCGTCCGGAAGGGGCTTCTGTCGGTCACAGAA +
Preference number: 6 (lower is better)
Translates to: LHRQVTCDIILR*TVRKGLLSVTE
Trigger: TTCTGTGACCGACAGAAGCCCCTTCCGGACGGTGCAGCGCAGTATTATGTCGCAGGTCACCTGCCGGTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp TGGGGCTGCAAGCAGTTGACAATGGACTCATCCCCCTaGAGCACTCGGACGAGGTTGGTGGTCTCCTGCCAA +
Preference number: 6 (lower is better)
Translates to: WGCKQLTMDSSP*STRTRLVVSCQ
Trigger: TTGGCAGGAGACCACCAACCTCGTCCGAGTGCTGCAGGGGGATGAGTCCATTGTCAACTGCTTGCAGCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
CDS CCA 72 bp ACAGCAGCTTCTTGTGGTGCAGTGGGTCCCACACAATaGTGTGCTGGTCGTCGGAACCAGACGCCAGCAGGT +
Preference number: 6 (lower is better)
Translates to: TAASCGAVGPTQ*CAGRRNQTPAG
Trigger: ACCTGCTGGCGTCTGGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp TCGCCTCCAGGGGGTTGGCATTCATGCGCCGCTGGTTaGCCTGAGATGCACCCTCCATATCTTCCACAACTC +
Preference number: 6 (lower is better)
Translates to: SPPGGWHSCAAG*PEMHPPYLPQL
Trigger: GAGTTGTGGAAGATATGGAGGGTGCATCTCAGGCCAACCAGCGGCGCATGAATGCCAACCCCCTGGAGGCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS GCA 72 bp GTGTGTCCTGTGTGCATGGACAGCAGCTTCTTGTGGTaGAGTGGGTCCCACACAATGGTGTGCTGGTCGTCG +
Preference number: 6 (lower is better)
Translates to: VCPVCMDSSFLW*SGSHTMVCWSS
Trigger: CGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCATGCACACAGGACACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp TACCGTAAGGTCGTGGACGTGCACCTTGGAGTCAGCTaGCCCCGTGATCAAAATGCGGTCTCCAGCATGAGG +
Preference number: 6 (lower is better)
Translates to: YRKVVDVHLGVS*PRDQNAVSSMR
Trigger: CCTCATGCTGGAGACCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACCTTACGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp TCCTGTGTGCATGGACAGCAGCTTCTTGTGGTGCAGTaGGTCCCACACAATGGTGTGCTGGTCGTCGGAACC +
Preference number: 6 (lower is better)
Translates to: SCVHGQQLLVVQ*VPHNGVLVVGT
Trigger: GGTTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCATGCACACAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 90 bp CCTACTGCCAGGCAGTTGTTATCCTGGGGGTTGACGGTGAGGCACTaGGCCTCCACCATCGGGCCACAGTATTCTGTTAGGTCAATCAGC +
Preference number: 6 (lower is better)
Translates to: PTARQLLSWGLTVRH*ASTIGPQYSVRSIS
Trigger: GCTGATTGACCTAACAGAATACTGTGGCCCGATGGTGGAGGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCTGGCAGTAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp AAGGGGCTTCTGTCGGTCACAGAAGGTATGCACGCCTaGGGAAGGGCTCTGCCTCATGCTCTTTCTGTGGTT +
Preference number: 6 (lower is better)
Translates to: KGLLSVTEGMHA*GRALPHALSVV
Trigger: AACCACAGAAAGAGCATGAGGCAGAGCCCTTCCGCAGGCGTGCATACCTTCTGTGACCGACAGAAGCCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp CCAAACATGTGGATCGTCTCCTTTACCGTAAGGTCGTaGACGTGCACCTTGGAGTCAGCTGCCCCCGTGATC +
Preference number: 6 (lower is better)
Translates to: PNMWIVSFTVRS*TCTLESAAPVI
Trigger: GATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACGATCCACATGTTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp GCCACATGGGCGCCGTGGCAATGCGCTTCACCCGGTTaGTGTGGTCTCCAAACATGTGGATCGTCTCCTTTA +
Preference number: 6 (lower is better)
Translates to: ATWAPWQCASPG*CGLQTCGSSPL
Trigger: TAAAGGAGACGATCCACATGTTTGGAGACCACACAAACCGGGTGAAGCGCATTGCCACGGCGCCCATGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp AGGCAGTTGTTATCCTGGGGGTTGACGGTGAGGCACTaGGCCTCCACCATCGGGCCACAGTATTCTGTTAGG +
Preference number: 6 (lower is better)
Translates to: RQLLSWGLTVRH*ASTIGPQYSVR
Trigger: CCTAACAGAATACTGTGGCCCGATGGTGGAGGCCAAGTGCCTCACCGTCAACCCCCAGGATAACAACTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp ACAATGGACTCATCCCCCTGCAGCACTCGGACGAGGTaGGTGGTCTCCTTTTCCCAGATGAAGAAGGAGCCG +
Preference number: 6 (lower is better)
Translates to: TMDSSPCSTRTR*VVSFSQMKKEP
Trigger: CGGCTCCTTCTTCATCTGGGAAAAGGAGACCACCAACCTCGTCCGAGTGCTGCAGGGGGATGAGTCCATTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS TCA 72 bp GAGATGCACCCTCCATATCTTCCACAACTCGGCCTGTaGGGTCTTCACTCTCTGGTCGTGGGTTCCACAGTC +
Preference number: 6 (lower is better)
Translates to: EMHPPYLPQLGL*GLHSLVVGSTV
Trigger: GACTGTGGAACCCACGACCAGAGAGTGAAGACCTCACAGGCCGAGTTGTGGAAGATATGGAGGGTGCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS GCA 72 bp CCCGTAGCACCATTTCGTCTTCTGAGATGGAGTCCTTaGGACTTGTGCTTCGAAGGCGAACTGGACCACCAC +
Preference number: 6 (lower is better)
Translates to: PVAPFRLLRWSP*DLCFEGELDHH
Trigger: GTGGTGGTCCAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAGAAGACGAAATGGTGCTACGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp ATGGGCGCCGTGGCAATGCGCTTCACCCGGTTTGTGTaGTCTCCAAACATGTGGATCGTCTCCTTTACCGTA +
Preference number: 6 (lower is better)
Translates to: MGAVAMRFTRFV*SPNMWIVSFTV
Trigger: TACGGTAAAGGAGACGATCCACATGTTTGGAGACCACACAAACCGGGTGAAGCGCATTGCCACGGCGCCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp TCATTCGAATGTCATAGAGCCTCACAAAGGGCCCACTaGCCCCTACTGCCAGGCAGTTGTTATCCTGGGGGT +
Preference number: 6 (lower is better)
Translates to: SFECHRASQRAH*PLLPGSCYPGG
Trigger: ACCCCCAGGATAACAACTGCCTGGCAGTAGGGGCCAGTGGGCCCTTTGTGAGGCTCTATGACATTCGAATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp ATCGTCTCCTTTACCGTAAGGTCGTGGACGTGCACCTaGGAGTCAGCTGCCCCCGTGATCAAAATGCGGTCT +
Preference number: 6 (lower is better)
Translates to: IVSFTVRSWTCT*ESAAPVIKMRS
Trigger: AGACCGCATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp GCACCATTTCGTCTTCTGAGATGGAGTCCTTGCGACTaGTGCTTCGAAGGCGAACTGGACCACCACCACCAC +
Preference number: 6 (lower is better)
Translates to: APFRLLRWSPCD*CFEGELDHHHH
Trigger: GTGGTGGTGGTGGTCCAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAGAAGACGAAATGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp CACTCGGACGAGGTTGGTGGTCTCCTGCCAAAGAAATaGGCCTCCTTGATATCCGTGGTGGTGTTGCAGTGC +
Preference number: 6 (lower is better)
Translates to: HSDEVGGLLPKK*ASLISVVVLQC
Trigger: GCACTGCAACACCACCACGGATATCAAGGAGGCCAATTTCTTTGGCAGGAGACCACCAACCTCGTCCGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105906.2
CDS CAA 90 bp TGTAGGCCATTCGACACGCCGTTGGACACCCCGTTAGTAGACATCTaGCCGTTCTGGACTTCCACGGAGTGGCATTTTCTAGGCAAGAGG +
Preference number: 6 (lower is better)
Translates to: CRPFDTPLDTPLVDI*PFWTSTEWHFLGKR
Trigger: CCTCTTGCCTAGAAAATGCCACTCCGTGGAAGTCCAGAACGGCAAGATGTCTACTAACGGGGTGTCCAACGGCGTGTCGAATGGCCTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 90 bp AAGCAGTTGACAATGGACTCATCCCCCTGCAGCACTCGGACGAGGTaGGTGGTCTCCTTTTCCCAGATGAAGAAGGAGCCGTCATCAGAG +
Preference number: 6 (lower is better)
Translates to: KQLTMDSSPCSTRTR*VVSFSQMKKEPSSE
Trigger: CTCTGATGACGGCTCCTTCTTCATCTGGGAAAAGGAGACCACCAACCTCGTCCGAGTGCTGCAGGGGGATGAGTCCATTGTCAACTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043305.14
CDS GCA 72 bp ATGTGGATCGTCTCCTTTACCGTAAGGTCGTGGACGTaGACCTTGGAGTCAGCTGCCCCCGTGATCAAAATG +
Preference number: 6 (lower is better)
Translates to: MWIVSFTVRSWT*TLESAAPVIKM
Trigger: CATTTTGATCACGGGGGCAGCTGACTCCAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACGATCCACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp ATGCGCTTCACCCGGTTTGTGTGGTCTCCAAACATGTaGATCGTCTCCTTTACCGTAAGGTCGTGGACGTGC +
Preference number: 6 (lower is better)
Translates to: MRFTRFVWSPNM*IVSFTVRSWTC
Trigger: GCACGTCCACGACCTTACGGTAAAGGAGACGATCCACATGTTTGGAGACCACACAAACCGGGTGAAGCGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CCA 72 bp CCGTTGGACACCCCGTTAGTAGACATCTTGCCGTTCTaGACTTCCACGGAGTGGCATTTTCTAGGCAAGAGG +
Preference number: 6 (lower is better)
Translates to: PLDTPLVDILPF*TSTEWHFLGKR
Trigger: CCTCTTGCCTAGAAAATGCCACTCCGTGGAAGTCCAGAACGGCAAGATGTCTACTAACGGGGTGTCCAACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp TCCCGTAGCACCATTTCGTCTTCTGAGATGGAGTCCTaGCGACTTGTGCTTCGAAGGCGAACTGGACCACCA +
Preference number: 6 (lower is better)
Translates to: SRSTISSSEMES*RLVLRRRTGPP
Trigger: TGGTGGTCCAGTTCGCCTTCGAAGCACAAGTCGCAAGGACTCCATCTCAGAAGACGAAATGGTGCTACGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 90 bp GAGAAGATATTTGCTGTGTGTCCTGTGTGCATGGACAGCAGCTTCTaGTGGTGCAGTGGGTCCCACACAATGGTGTGCTGGTCGTCGGAA +
Preference number: 6 (lower is better)
Translates to: EKIFAVCPVCMDSSF*WCSGSHTMVCWSSE
Trigger: TTCCGACGACCAGCACACCATTGTGTGGGACCCACTGCACCACAAGAAGCTGCTGTCCATGCACACAGGACACACAGCAAATATCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS TCA 72 bp TCTCCTCACCATCACTTTTGGAGAAAAGGGCAGCTGTaGTGTCCCGGCCTAATGCGTCACATGCACTGCTGT +
Preference number: 6 (lower is better)
Translates to: SPHHHFWRKGQL*CPGLMRHMHCC
Trigger: ACAGCAGTGCATGTGACGCATTAGGCCGGGACATCACAGCTGCCCTTTTCTCCAAAAGTGATGGTGAGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp GTCAAGTCAAACAGATACACCTGCTCTCCTCCCATGTaGACTAGCAGCTCTGTGCCATTGGGGCTGAAGGTC +
Preference number: 6 (lower is better)
Translates to: VKSNRYTCSPPM*TSSSVPLGLKV
Trigger: GACCTTCAGCCCCAATGGCACAGAGCTGCTAGTCAACATGGGAGGAGAGCAGGTGTATCTGTTTGACTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp TTCGACACGCCGTTGGACACCCCGTTAGTAGACATCTaGCCGTTCTGGACTTCCACGGAGTGGCATTTTCTA +
Preference number: 6 (lower is better)
Translates to: FDTPLDTPLVDI*PFWTSTEWHFL
Trigger: TAGAAAATGCCACTCCGTGGAAGTCCAGAACGGCAAGATGTCTACTAACGGGGTGTCCAACGGCGTGTCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 90 bp ATCGGGCCACAGTATTCTGTTAGGTCAATCAGCACCTCTGAGTGTTaGCTGTTCTCCCGAAGGTCATACTGGCGGATAAGCCCATCCTCT +
Preference number: 6 (lower is better)
Translates to: IGPQYSVRSISTSEC*LFSRRSYWRISPSS
Trigger: AGAGGATGGGCTTATCCGCCAGTATGACCTTCGGGAGAACAGCAAACACTCAGAGGTGCTGATTGACCTAACAGAATACTGTGGCCCGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2
CDS CAA 72 bp CAGTATTCTGTTAGGTCAATCAGCACCTCTGAGTGTTaGCTGTTCTCCCGAAGGTCATACTGGCGGATAAGC +
Preference number: 6 (lower is better)
Translates to: QYSVRSISTSEC*LFSRRSYWRIS
Trigger: GCTTATCCGCCAGTATGACCTTCGGGAGAACAGCAAACACTCAGAGGTGCTGATTGACCTAACAGAATACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043305.14
ENSMUST00000105906.2