Pregenerated sensors for WDR89 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045690Ensembl transcript IDs: ENSMUST00000062370.9, ENSMUST00000187307.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTaGGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAA | + |
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Preference number: 1 (lower is better) Translates to: SDTPEEGIRSCYRWL*ATMWLWDLNSGPSE Trigger: TTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR TCA 90 bp | GACGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGTGTTACAGATGGTTGTaGGCCACCATGTGGTTGTGG | + |
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Preference number: 2 (lower is better) Translates to: DVAHVGCGGQTSRVRPRQCYRWL*ATMWLW Trigger: CCACAACCACATGGTGGCTCACAACCATCTGTAACA...CTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| 3UTR-3UTR TCA 90 bp | TGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGTCTCCAGCTGTCTACTaGAGATTCCTCTTCAGGGCT | + |
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Preference number: 2 (lower is better) Translates to: CLQTLQKRASDLVTDGCESPAVY*RFLFRA Trigger: AGCCCTGAAGAGGAATCTTCAGTAGACAGCTGGAGA...CTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR GCA 90 bp | TCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGTGTTGTGTGCTAACTaGCTGCTTTCACAGATAAGC | + |
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Preference number: 2 (lower is better) Translates to: SRRGHQILLQMVVSHHVVVLCAN*LLSQIS Trigger: GCTTATCTGTGAAAGCAGGCAGTTAGCACACAACAC...AACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR CCA 90 bp | GTGAGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTAAAGTACCTGGGTGCTaGCTAACCAAATGTAAATAT | + |
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Preference number: 2 (lower is better) Translates to: VSHHVVVGFELWTFGRAVKVPGC*LTKCKY Trigger: ATATTTACATTTGGTTAGCCAGCACCCAGGTACTTT...AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR CCA 90 bp | CACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGATGGGTTTCAAAATGTaGCTTATAATTCCCCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: HSRRGHQILLQMVVSHHVMGFKM*LIIPLS Trigger: TGACAGGGGAATTATAAGCCACATTTTGAAACCCAT...CACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTAAAGTACCTGGGTGCTaGCTAACCAAATGTAAATAT | + |
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Preference number: 2 (lower is better) Translates to: SRRGHQILLQMVVSHHVVKVPGC*LTKCKY Trigger: ATATTTACATTTGGTTAGCCAGCACCCAGGTACTTT...AACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGATGGGTTTCAAAATGTaGCTTATAATTCCCCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: CLQTLQKRASDLVTDGCEMGFKM*LIIPLS Trigger: TGACAGGGGAATTATAAGCCACATTTTGAAACCCAT...CTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR CCA 90 bp | TTATTTATTATATGTAAGTACACTGTAGCGCTGTCTTCAGACACTCCAGAAGAGGCCACCATGTGGTTGTaGGATTTGAACTCTGGACCT | + |
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Preference number: 2 (lower is better) Translates to: LFIICKYTVALSSDTPEEATMWL*DLNSGP Trigger: AGGTCCAGAGTTCAAATCCCACAACCACATGGTGGC...CTCTTCTGGAGTGTCTGAAGACAGCGCTACAGTGTACTTACATATAATAAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR CAA 90 bp | GACGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGAACCATTCTCAGTATTaGTCTGGGGCAGGGTGGGTG | + |
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Preference number: 3 (lower is better) Translates to: DVAHVGCGGQTSRVRPRQNHSQY*SGAGWV Trigger: CACCCACCCTGCCCCAGACAAATACTGAGAATGGTT...CTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| 3UTR-3UTR CAA 90 bp | ACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCAGCCACCCGCTCCCTaGCCTCTCCAGCTGTCTACT | + |
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Preference number: 3 (lower is better) Translates to: TMWLWDLNSGPSEEQLGAQPPAP*PLQLST Trigger: AGTAGACAGCTGGAGAGGCAAGGGAGCGGGTGGCTG...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR-3UTR CAA 90 bp | CACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGGGGCAGGGTGGGTGTaGTGTGCTAACTGCCTGCTT | + |
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Preference number: 3 (lower is better) Translates to: HSRRGHQILLQMVVSHHVGAGWV*CANCLL Trigger: AAGCAGGCAGTTAGCACACAACACCCACCCTGCCCC...CACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR TCA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGTGGGATTTaGACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: TDGCEPPCGCGI*TLDLRKSSWVL Trigger: GAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCACAACCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR GCA 72 bp | TATTTGTCTGGGGCAGGGTGGGTGTTGTGTGCTAACTaGCTGCTTTCACAGATAAGCTTTAAAAAGATGTGC | + |
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Preference number: 3 (lower is better) Translates to: YLSGAGWVLCAN*LLSQISFKKMC Trigger: GCACATCTTTTTAAAGCTTATCTGTGAAAGCAGGCAGTTAGCACACAACACCCACCCTGCCCCAGACAAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR TCA 90 bp | GACGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGATCACTGTGCGTCTCTaGGTAGGCACCAAGTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: DVAHVGCGGQTSRVRPRQITVRL*VGTKWV Trigger: GACCCACTTGGTGCCTACTCAGAGACGCACAGTGAT...CTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| CDS-3UTR GCA 90 bp | CGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGCGTCACGGTGCCATCTGTaGTTGCAGAGTAGACACTGT | + |
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Preference number: 4 (lower is better) Translates to: RSACRLRGTDLTRATSAASRCHL*LQSRHC Trigger: ACAGTGTCTACTCTGCAAGCACAGATGGCACCGTGA...CGCTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| CDS-3UTR GCA 90 bp | GACGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGCCCAACACTTCACGGTaGCATCTGTGCTTGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: DVAHVGCGGQTSRVRPRQPNTSR*HLCLQS Trigger: ACTCTGCAAGCACAGATGGCACCGTGAAGTGTTGGG...CTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| CDS-3UTR CCA 90 bp | GACGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGTGCCAAGCAGGTAAGTaGGTTCTTTTGGTTCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: DVAHVGCGGQTSRVRPRQCQAGK*VLLVPR Trigger: CCTCGGAACCAAAAGAACCCACTTACCTGCTTGGCA...CTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| CDS-3UTR GCA 90 bp | CGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGCGCTGAGATGTGAACCTTaGATCCCAAAATACCAACAA | + |
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Preference number: 4 (lower is better) Translates to: RSACRLRGTDLTRATSAALRCEP*IPKYQQ Trigger: TTGTTGGTATTTTGGGATGCAAGGTTCACATCTCAG...CGCTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| CDS-3UTR CCA 90 bp | GTGAGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTAGAAAGAACGGACGGTaGCTGCATGGCCCCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: VSHHVVVGFELWTFGRAVRKNGR*LHGPHE Trigger: TTCATGGGGGCCATGCAGCCACCGTCCGTTCTTTCT...AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR TCA 90 bp | TCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTATCACTGTGCGTCTCTaGGTAGGCACCAAGTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: SRRGHQILLQMVVSHHVVITVRL*VGTKWV Trigger: GACCCACTTGGTGCCTACTCAGAGACGCACAGTGAT...AACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | GTGAGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGTGCCATCTGTGCTTaGAGAGTAGACACTGTCACA | + |
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Preference number: 4 (lower is better) Translates to: VSHHVVVGFELWTFGRAVGAICA*RVDTVT Trigger: TGTGACAGTGTCTACTCTGCAAGCACAGATGGCACC...AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | GTGAGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTACTCGAACTCGCTGCTaGACGGAGGATGCAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: VSHHVVVGFELWTFGRAVTRTRC*TEDAIF Trigger: GAAAATTGCATCCTCCGTGCAGCAGCGAGTTCGAGT...AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR CCA 90 bp | AACCTGAATGAAACCATTCTCAGTATTTGTCTGGGGCAGGGTGGGTGTTGTGTGAGAAAGAACGGACGGTaGCTGCATGGCCCCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: NLNETILSICLGQGGCCVRKNGR*LHGPHE Trigger: TTCATGGGGGCCATGCAGCCACCGTCCGTTCTTTCT...CACACAACACCCACCCTGCCCCAGACAAATACTGAGAATGGTTTCATTCAGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR TCA 90 bp | ACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTGGATGGAAACGCACTTaGGTGATATCATCACTGTGC | + |
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Preference number: 4 (lower is better) Translates to: TMWLWDLNSGPSEEQLGAGWKRT*VISSLC Trigger: GCACAGTGATGATATCACTCAAGTGCGTTTCCATCC...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR TCA 90 bp | GTGAGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTCTGTCCATCTTCTCATaGTACAGGCCACCAATCAGA | + |
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Preference number: 4 (lower is better) Translates to: VSHHVVVGFELWTFGRAVLSIFS*YRPPIR Trigger: TCTGATTGGTGGCCTGTATCATGAGAAGATGGACAG...AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | TCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTCCCAACACTTCACGGTaGCATCTGTGCTTGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: SRRGHQILLQMVVSHHVVPNTSR*HLCLQS Trigger: ACTCTGCAAGCACAGATGGCACCGTGAAGTGTTGGG...AACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | ACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTCGTCAACTTTCTCTaGACCAGCACAAATGACATG | + |
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Preference number: 4 (lower is better) Translates to: TMWLWDLNSGPSEEQLGALVNFL*TSTNDM Trigger: CATGTCATTTGTGCTGGTGCAGAGAAAGTTGACGAG...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | GTGAGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTACTGTCACAGGAATTTaGAAAGCTGACTCCACTAAG | + |
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Preference number: 4 (lower is better) Translates to: VSHHVVVGFELWTFGRAVTVTGI*KADSTK Trigger: CTTAGTGGAGTCAGCTTTGCAAATTCCTGTGACAGT...AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | TATCTGAACCTGAATGAAACCATTCTCAGTATTTGTCTGGGGCAGGGTGGGTGTTCACGGTGCCATCTGTaGTTGCAGAGTAGACACTGT | + |
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Preference number: 4 (lower is better) Translates to: YLNLNETILSICLGQGGCSRCHL*LQSRHC Trigger: ACAGTGTCTACTCTGCAAGCACAGATGGCACCGTGA...ACACCCACCCTGCCCCAGACAAATACTGAGAATGGTTTCATTCAGGTTCAGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR CCA 90 bp | CTGAACCTGAATGAAACCATTCTCAGTATTTGTCTGGGGCAGGGTGGGTGTTGTGTAAGTGGGTTCTTTTaGTTCCGAGGACCTCCTAAC | + |
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Preference number: 4 (lower is better) Translates to: LNLNETILSICLGQGGCCVSGFF*FRGPPN Trigger: GTTAGGAGGTCCTCGGAACCAAAAGAACCCACTTAC...ACAACACCCACCCTGCCCCAGACAAATACTGAGAATGGTTTCATTCAGGTTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | AACCTGAATGAAACCATTCTCAGTATTTGTCTGGGGCAGGGTGGGTGTTGTGTGTCTTTGACGTGTCTATaGCAAGCAGGTAAGTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: NLNETILSICLGQGGCCVSLTCL*QAGKWV Trigger: AACCCACTTACCTGCTTGGCATAGACACGTCAAAGA...CACACAACACCCACCCTGCCCCAGACAAATACTGAGAATGGTTTCATTCAGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | AGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGTGCTCGTCAACTTTCTCTaGACCAGCACAAATGACATG | + |
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Preference number: 4 (lower is better) Translates to: RRGHQILLQMVVSHHVVVLVNFL*TSTNDM Trigger: CATGTCATTTGTGCTGGTGCAGAGAAAGTTGACGAG...CACAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR CCA 90 bp | TGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGGTAAGTGGGTTCTTTTaGTTCCGAGGACCTCCTAAC | + |
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Preference number: 4 (lower is better) Translates to: CLQTLQKRASDLVTDGCEVSGFF*FRGPPN Trigger: GTTAGGAGGTCCTCGGAACCAAAAGAACCCACTTAC...CTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| 3UTR CAA 72 bp | AACCATTCTCAGTATTTGTCTGGGGCAGGGTGGGTGTaGTGTGCTAACTGCCTGCTTTCACAGATAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: NHSQYLSGAGWV*CANCLLSQISF Trigger: AAAGCTTATCTGTGAAAGCAGGCAGTTAGCACACAACACCCACCCTGCCCCAGACAAATACTGAGAATGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | TGGGTGTTGTGTGCTAACTGCCTGCTTTCACAGATAAGCTTTAAAAAGATGTGCACTCGAACTCGCTGCTaGACGGAGGATGCAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: WVLCANCLLSQISFKKMCTRTRC*TEDAIF Trigger: GAAAATTGCATCCTCCGTGCAGCAGCGAGTTCGAGT...GCACATCTTTTTAAAGCTTATCTGTGAAAGCAGGCAGTTAGCACACAACACCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR CCA 90 bp | TGGGTGTTGTGTGCTAACTGCCTGCTTTCACAGATAAGCTTTAAAAAGATGTGCTGCCAAGCAGGTAAGTaGGTTCTTTTGGTTCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: WVLCANCLLSQISFKKMCCQAGK*VLLVPR Trigger: CCTCGGAACCAAAAGAACCCACTTACCTGCTTGGCA...GCACATCTTTTTAAAGCTTATCTGTGAAAGCAGGCAGTTAGCACACAACACCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR CCA 90 bp | GTGAGCCACCATGTGGTTGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTATTTCTCTTACATCCTaGATGTTCAAACACGTGATC | + |
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Preference number: 4 (lower is better) Translates to: VSHHVVVGFELWTFGRAVISLTS*MFKHVI Trigger: GATCACGTGTTTGAACATCCAGGATGTAAGAGAAAT...AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCACAACCACATGGTGGCTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR TCA 90 bp | TGGGTGTTGTGTGCTAACTGCCTGCTTTCACAGATAAGCTTTAAAAAGATGTGCGGATGGAAACGCACTTaGGTGATATCATCACTGTGC | + |
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Preference number: 4 (lower is better) Translates to: WVLCANCLLSQISFKKMCGWKRT*VISSLC Trigger: GCACAGTGATGATATCACTCAAGTGCGTTTCCATCC...GCACATCTTTTTAAAGCTTATCTGTGAAAGCAGGCAGTTAGCACACAACACCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | TGGGTGTTGTGTGCTAACTGCCTGCTTTCACAGATAAGCTTTAAAAAGATGTGCTCTTTGACGTGTCTATaGCAAGCAGGTAAGTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: WVLCANCLLSQISFKKMCSLTCL*QAGKWV Trigger: AACCCACTTACCTGCTTGGCATAGACACGTCAAAGA...GCACATCTTTTTAAAGCTTATCTGTGAAAGCAGGCAGTTAGCACACAACACCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | TGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCTGAGATGTGAACCTTaGATCCCAAAATACCAACAA | + |
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Preference number: 4 (lower is better) Translates to: CLQTLQKRASDLVTDGCELRCEP*IPKYQQ Trigger: TTGTTGGTATTTTGGGATGCAAGGTTCACATCTCAG...CTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR GCA 90 bp | TTATTTATTATATGTAAGTACACTGTAGCGCTGTCTTCAGACACTCCAGAAGAGACTGTCACAGGAATTTaGAAAGCTGACTCCACTAAG | + |
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Preference number: 4 (lower is better) Translates to: LFIICKYTVALSSDTPEETVTGI*KADSTK Trigger: CTTAGTGGAGTCAGCTTTGCAAATTCCTGTGACAGT...CTCTTCTGGAGTGTCTGAAGACAGCGCTACAGTGTACTTACATATAATAAATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR CAA 90 bp | CGTAGCGCATGTCGGCTGCGGGGGACAGACCTCACGCGTGCGACCTCGGCAGCGCTGAGATCAAACACATaGACCAGACCATCAGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: RSACRLRGTDLTRATSAALRSNT*TRPSVD Trigger: GTCCACTGATGGTCTGGTCAATGTGTTTGATCTCAG...CGCTGCCGAGGTCGCACGCGTGAGGTCTGTCCCCCGCAGCCGACATGCGCTACG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062370.9 |
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| CDS TCA 90 bp | AGGCTGGTCACATGGGTCAGTCCTGCCGAGGTGCAGCTCAGTAGGTaGATCTTTCCGGTGTTGGTTCCTCCAATAACAAACAGTCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: RLVTWVSPAEVQLSR*IFPVLVPPITNSLS Trigger: GGACAGACTGTTTGTTATTGGAGGAACCAACACCGGAAAGATTCACCTACTGAGCTGCACCTCGGCAGGACTGACCCATGTGACCAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS GCA 90 bp | CACGGTGCCATCTGTGCTTGCAGAGTAGACACTGTCACAGGAATTTaGAAAGCTGACTCCACTAAGAAGCCCGGGAGAGCCACCAAATTC | + |
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Preference number: 5 (lower is better) Translates to: HGAICACRVDTVTGI*KADSTKKPGRATKF Trigger: GAATTTGGTGGCTCTCCCGGGCTTCTTAGTGGAGTCAGCTTTGCAAATTCCTGTGACAGTGTCTACTCTGCAAGCACAGATGGCACCGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS GCA 90 bp | GGCACCAAGTGGGTCTCTCGTCGACAGATCCTGAGATGTGAACCTTaGATCCCAAAATACCAACAATGCATCCTCGTCAACTTTCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: GTKWVSRRQILRCEP*IPKYQQCILVNFLC Trigger: GCAGAGAAAGTTGACGAGGATGCATTGTTGGTATTTTGGGATGCAAGGTTCACATCTCAGGATCTGTCGACGAGAGACCCACTTGGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS GCA 90 bp | GTAAGAATCGCTGCTGTGGACTCGAACTCGCTGCTGCACGGAGGATaGAATTTTCAAGCTGTCTTTCTTTGTGAACGTCTTCTCCATAGC | + |
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Preference number: 5 (lower is better) Translates to: VRIAAVDSNSLLHGG*NFQAVFLCERLLHS Trigger: GCTATGGAGAAGACGTTCACAAAGAAAGACAGCTTGAAAATTGCATCCTCCGTGCAGCAGCGAGTTCGAGTCCACAGCAGCGATTCTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS-3UTR CAA 90 bp | CTGAACCTGAATGAAACCATTCTCAGTATTTGTCTGGGGCAGGGTGGGTGTTGTCTGAGATCAAACACATaGACCAGACCATCAGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: LNLNETILSICLGQGGCCLRSNT*TRPSVD Trigger: GTCCACTGATGGTCTGGTCAATGTGTTTGATCTCAG...ACAACACCCACCCTGCCCCAGACAAATACTGAGAATGGTTTCATTCAGGTTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS GCA 72 bp | CATGAAGGCTGGTCACATGGGTCAGTCCTGCCGAGGTaGAGCTCAGTAGGTGAATCTTTCCGGTGTTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: HEGWSHGSVLPR*SSVGESFRCWF Trigger: GAACCAACACCGGAAAGATTCACCTACTGAGCTGCACCTCGGCAGGACTGACCCATGTGACCAGCCTTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS GCA 72 bp | ATCTGTGCTTGCAGAGTAGACACTGTCACAGGAATTTaGAAAGCTGACTCCACTAAGAAGCCCGGGAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: ICACRVDTVTGI*KADSTKKPGRA Trigger: GGCTCTCCCGGGCTTCTTAGTGGAGTCAGCTTTGCAAATTCCTGTGACAGTGTCTACTCTGCAAGCACAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS CAA 90 bp | GCAACCAGTGCGTCCTCTTCCTTATCAGCACTGAGATCAAACACATaGACCAGACCATCAGTGGACCCTGAGACAACCAAGTTGGGATTG | + |
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Preference number: 6 (lower is better) Translates to: ATSASSSLSALRSNT*TRPSVDPETTKLGL Trigger: CAATCCCAACTTGGTTGTCTCAGGGTCCACTGATGGTCTGGTCAATGTGTTTGATCTCAGTGCTGATAAGGAAGAGGACGCACTGGTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS GCA 72 bp | GCTGCTGTGGACTCGAACTCGCTGCTGCACGGAGGATaGAATTTTCAAGCTGTCTTTCTTTGTGAACGTCTT | + |
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Preference number: 6 (lower is better) Translates to: AAVDSNSLLHGG*NFQAVFLCERL Trigger: AAGACGTTCACAAAGAAAGACAGCTTGAAAATTGCATCCTCCGTGCAGCAGCGAGTTCGAGTCCACAGCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS CAA 72 bp | GACCCATTTGAGCACAGAACAGCCACCAAGCCTCCTTaGTCTGCTTGTACAGTCTTTGACGTGTCTATGCCA | + |
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Preference number: 6 (lower is better) Translates to: DPFEHRTATKPP*SACTVFDVSMP Trigger: TGGCATAGACACGTCAAAGACTGTACAAGCAGACAAAGGAGGCTTGGTGGCTGTTCTGTGCTCAAATGGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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| CDS CCA 72 bp | TGCCCATCTTTCACATCGGTTATTTCTCTTACATCCTaGATGTTCAAACACGTGATCGGTTCATCTGTATCC | + |
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Preference number: 6 (lower is better) Translates to: CPSFTSVISLTS*MFKHVIGSSVS Trigger: GGATACAGATGAACCGATCACGTGTTTGAACATCCAGGATGTAAGAGAAATAACCGATGTGAAAGATGGGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062370.9 ENSMUST00000187307.2 |
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