Pregenerated sensors for WDR88 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000118454Ensembl transcript IDs: ENSMUST00000238407.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | AAAGAGCTGTCTCTGGCAATGCAGCAGGAACTCACACAGCCCTCGTaGCCCTTCATCAGAGTCACGCAGGCTCCGCGGTTTCGAAACTCC | + |
Preference number: 5 (lower is better) Translates to: KELSLAMQQELTQPS*PFIRVTQAPRFRNS Trigger: GGAGTTTCGAAACCGCGGAGCCTGCGTGACTCTGATGAAGGGCCACGAGGGCTGTGTGAGTTCCTGCTGCATTGCCAGAGACAGCTCTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS GCA 90 bp | TCTTGCTATCGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTTaGTATCGGCCGAACTCTTCCTGCTGTCTACCGAAACTCTCCTGT | + |
Preference number: 5 (lower is better) Translates to: SCYRPNPSCYRPNPS*YRPNSSCCLPKLSC Trigger: ACAGGAGAGTTTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 90 bp | CCCCAGAACTTCTTCACTGTTGCCATGTGGCTCTTCTCACGTGGCTaGCGATCCTTGTCTAAGGCCAGGGGGTCGTGGGAGGTCAGATTA | + |
Preference number: 5 (lower is better) Translates to: PQNFFTVAMWLFSRG*RSLSKARGSWEVRL Trigger: TAATCTGACCTCCCACGACCCCCTGGCCTTAGACAAGGATCGTCAGCCACGTGAGAAGAGCCACATGGCAACAGTGAAGAAGTTCTGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS GCA 90 bp | GTTGCTAATAGCAACATCCGTCACCCAGTCCTCGTGGCCCTTCAATaGCAACTTCCGGTAGCCACCTCCTACATCCCAAATAGCCACAGT | + |
Preference number: 5 (lower is better) Translates to: VANSNIRHPVLVALQ*QLPVATSYIPNSHS Trigger: ACTGTGGCTATTTGGGATGTAGGAGGTGGCTACCGGAAGTTGGCATTGAAGGGCCACGAGGACTGGGTGACGGATGTTGCTATTAGCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 90 bp | CATCTTCAGCATCCCACAGCTTCACGGAGCAGTCGTAGGAGCTACTaGGGAACCTTGTGTCATTCATACAAAAGTGGCAGGAACTCACGA | + |
Preference number: 5 (lower is better) Translates to: HLQHPTASRSSRRSY*GTLCHSYKSGRNSR Trigger: TCGTGAGTTCCTGCCACTTTTGTATGAATGACACAAGGTTCCTCAGTAGCTCCTACGACTGCTCCGTGAAGCTGTGGGATGCTGAAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 90 bp | CCGTTTTATCATAGGATGACGCCACTATCCTTCTGTTGTCAGCCGTaGTGCTGCACTCTAAAACAGGAGCTTTGGGTCGTGGCTCAAAGT | + |
Preference number: 5 (lower is better) Translates to: PFYHRMTPLSFCCQP*CCTLKQELWVVAQS Trigger: ACTTTGAGCCACGACCCAAAGCTCCTGTTTTAGAGTGCAGCATCACGGCTGACAACAGAAGGATAGTGGCGTCATCCTATGATAAAACGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 90 bp | TGTTTTTATCCCAGGAGCTGGTACATAAGAAGTGGCCAGTGGAGGTaGAACAGCAGTCTGAGATGGCATTGTAATGCGCCTTGGGAATGG | + |
Preference number: 5 (lower is better) Translates to: CFYPRSWYIRSGQWR*NSSLRWHCNAPWEW Trigger: CCATTCCCAAGGCGCATTACAATGCCATCTCAGACTGCTGTTTCACCTCCACTGGCCACTTCTTATGTACCAGCTCCTGGGATAAAAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS GCA 72 bp | CGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTTaGTATCGGCCGAACTCTTCCTGCTGTCTACCGAAA | + |
Preference number: 6 (lower is better) Translates to: RPNPSCYRPNPS*YRPNSSCCLPK Trigger: TTTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | TCGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTaGCTATCGGCCGAACTCTTCCTGCTGTCTACCGAA | + |
Preference number: 6 (lower is better) Translates to: SAEPLLLSAEPL*LSAELFLLSTE Trigger: TTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 90 bp | CTCTTGCTATCGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTaGCTATCGGCCGAACTCTTCCTGCTGTCTACCGAAACTCTCCTG | + |
Preference number: 6 (lower is better) Translates to: LLLSAEPLLLSAEPL*LSAELFLLSTETLL Trigger: CAGGAGAGTTTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 72 bp | TTCTTCACTGTTGCCATGTGGCTCTTCTCACGTGGCTaGCGATCCTTGTCTAAGGCCAGGGGGTCGTGGGAG | + |
Preference number: 6 (lower is better) Translates to: FFTVAMWLFSRG*RSLSKARGSWE Trigger: CTCCCACGACCCCCTGGCCTTAGACAAGGATCGTCAGCCACGTGAGAAGAGCCACATGGCAACAGTGAAGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS GCA 72 bp | AGCAACATCCGTCACCCAGTCCTCGTGGCCCTTCAATaGCAACTTCCGGTAGCCACCTCCTACATCCCAAAT | + |
Preference number: 6 (lower is better) Translates to: SNIRHPVLVALQ*QLPVATSYIPN Trigger: ATTTGGGATGTAGGAGGTGGCTACCGGAAGTTGGCATTGAAGGGCCACGAGGACTGGGTGACGGATGTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 72 bp | TCATCAGGGCCCATGGCACCTTGCTTTGTTGCGCCCTaGGAAAGGTGGGTTGAGATATTTCTCTGTCCTCAC | + |
Preference number: 6 (lower is better) Translates to: SSGPMAPCFVAP*ERWVEIFLCPH Trigger: GTGAGGACAGAGAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCCATGGGCCCTGATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 72 bp | CCCAGGAGCTGGTACATAAGAAGTGGCCAGTGGAGGTaGAACAGCAGTCTGAGATGGCATTGTAATGCGCCT | + |
Preference number: 6 (lower is better) Translates to: PRSWYIRSGQWR*NSSLRWHCNAP Trigger: AGGCGCATTACAATGCCATCTCAGACTGCTGTTTCACCTCCACTGGCCACTTCTTATGTACCAGCTCCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS GCA 72 bp | ACGGATATCTGGGAGGGACAGCTTGAAAAGACCCAATaGTCTCATCAGGGCCCATGGCACCTTGCTTTGTTG | + |
Preference number: 6 (lower is better) Translates to: TDIWEGQLEKTQ*SHQGPWHLALL Trigger: CAACAAAGCAAGGTGCCATGGGCCCTGATGAGAGCATTGGGTCTTTTCAAGCTGTCCCTCCCAGATATCCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | ACCCAATGCTCTCATCAGGGCCCATGGCACCTTGCTTaGTTGCGCCCTGAGAAAGGTGGGTTGAGATATTTC | + |
Preference number: 6 (lower is better) Translates to: TQCSHQGPWHLA*LRPEKGGLRYF Trigger: GAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCCATGGGCCCTGATGAGAGCATTGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 90 bp | TTGGGAATGGTAAACAGCGTGGTTCGGGATGTGATGTCCCAGATCTaGATACACCTGTCCATGGAGACAGAAGCCACCTTCTGGCTGTCA | + |
Preference number: 6 (lower is better) Translates to: LGMVNSVVRDVMSQI*IHLSMETEATFWLS Trigger: TGACAGCCAGAAGGTGGCTTCTGTCTCCATGGACAGGTGTATCAAGATCTGGGACATCACATCCCGAACCACGCTGTTTACCATTCCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 72 bp | CATCCCACAGCTTCACGGAGCAGTCGTAGGAGCTACTaGGGAACCTTGTGTCATTCATACAAAAGTGGCAGG | + |
Preference number: 6 (lower is better) Translates to: HPTASRSSRRSY*GTLCHSYKSGR Trigger: CCTGCCACTTTTGTATGAATGACACAAGGTTCCTCAGTAGCTCCTACGACTGCTCCGTGAAGCTGTGGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 72 bp | CTCAACGTCCCAAGCCCTCACCGTTTTATCATAGGATaGCGCCACTATCCTTCTGTTGTCAGCCGTGATGCT | + |
Preference number: 6 (lower is better) Translates to: LNVPSPHRFIIG*RHYPSVVSRDA Trigger: AGCATCACGGCTGACAACAGAAGGATAGTGGCGTCATCCTATGATAAAACGGTGAGGGCTTGGGACGTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | CAATGCTCTCATCAGGGCCCATGGCACCTTGCTTTGTaGCGCCCTGAGAAAGGTGGGTTGAGATATTTCTCT | + |
Preference number: 6 (lower is better) Translates to: QCSHQGPWHLAL*RPEKGGLRYFS Trigger: AGAGAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCCATGGGCCCTGATGAGAGCATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 90 bp | AGTCTCATGGAACTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTaGTTGCTAATAGCAACATCCGTCACCCAGTCCTCGTGGCCCTTC | + |
Preference number: 6 (lower is better) Translates to: SLMELSFEAERIHFL*LLIATSVTQSSWPF Trigger: GAAGGGCCACGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAGTTCCATGAGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 72 bp | GATTATAATACCGACGGATATCTGGGAGGGACAGCTTaGAAAGACCCAATGCTCTCATCAGGGCCCATGGCA | + |
Preference number: 6 (lower is better) Translates to: DYNTDGYLGGTA*KDPMLSSGPMA Trigger: TGCCATGGGCCCTGATGAGAGCATTGGGTCTTTTCAAGCTGTCCCTCCCAGATATCCGTCGGTATTATAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | TTGTCAGCCGTGATGCTGCACTCTAAAACAGGAGCTTaGGGTCGTGGCTCAAAGTCCCAAATCACAGTTCCA | + |
Preference number: 6 (lower is better) Translates to: LSAVMLHSKTGA*GRGSKSQITVP Trigger: TGGAACTGTGATTTGGGACTTTGAGCCACGACCCAAAGCTCCTGTTTTAGAGTGCAGCATCACGGCTGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | CTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTTGTaGCTAATAGCAACATCCGTCACCCAGTCCTCGTGG | + |
Preference number: 6 (lower is better) Translates to: LSFEAERIHFLL*LIATSVTQSSW Trigger: CCACGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 90 bp | ATCCTTCTGTTGTCAGCCGTGATGCTGCACTCTAAAACAGGAGCTTaGGGTCGTGGCTCAAAGTCCCAAATCACAGTTCCATCTTCAGCA | + |
Preference number: 6 (lower is better) Translates to: ILLLSAVMLHSKTGA*GRGSKSQITVPSSA Trigger: TGCTGAAGATGGAACTGTGATTTGGGACTTTGAGCCACGACCCAAAGCTCCTGTTTTAGAGTGCAGCATCACGGCTGACAACAGAAGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 90 bp | CTCATGGAACTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTTGTaGCTAATAGCAACATCCGTCACCCAGTCCTCGTGGCCCTTCAAT | + |
Preference number: 6 (lower is better) Translates to: LMELSFEAERIHFLL*LIATSVTQSSWPFN Trigger: ATTGAAGGGCCACGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAGTTCCATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS TCA 72 bp | GGCACCTTGCTTTGTTGCGCCCTGAGAAAGGTGGGTTaGGATATTTCTCTGTCCTCACTGAAATCCATCTTC | + |
Preference number: 6 (lower is better) Translates to: GTLLCCALRKVG*DISLSSLKSIF Trigger: GAAGATGGATTTCAGTGAGGACAGAGAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | CCCTTCCACCAACTGTCCTCGACGAAATCCAACTTCTaGGAGTCAAGATCCCCCTTCGGTTTAACTCTTTTC | + |
Preference number: 6 (lower is better) Translates to: PFHQLSSTKSNF*ESRSPFGLTLF Trigger: GAAAAGAGTTAAACCGAAGGGGGATCTTGACTCCAAGAAGTTGGATTTCGTCGAGGACAGTTGGTGGAAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | GGGCTAAATCTGTTCTTACTATCGACTGAACCCCTCTaGCTATCGACTGAACCCCTCTTGCTATCGACCGAA | + |
Preference number: 6 (lower is better) Translates to: GLNLFLLSTEPL*LSTEPLLLSTE Trigger: TTCGGTCGATAGCAAGAGGGGTTCAGTCGATAGCAAGAGGGGTTCAGTCGATAGTAAGAACAGATTTAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | GAACTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTaGTTGCTAATAGCAACATCCGTCACCCAGTCCTCG | + |
Preference number: 6 (lower is better) Translates to: ELSFEAERIHFL*LLIATSVTQSS Trigger: CGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | ACCAAGACCCAATTGTACTCGGCAAAATCCAAATTCTaGTTCTTAAGAGACCCCTTCCACCAACTGTCCTCG | + |
Preference number: 6 (lower is better) Translates to: TKTQLYSAKSKF*FLRDPFHQLSS Trigger: CGAGGACAGTTGGTGGAAGGGGTCTCTTAAGAACAAGAATTTGGATTTTGCCGAGTACAATTGGGTCTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS GCA 72 bp | TTCATACAAAAGTGGCAGGAACTCACGATGTGGTCATaGCCGATCAGAATCTTATACGGGATCTTAGAGAGA | + |
Preference number: 6 (lower is better) Translates to: FIQKWQELTMWS*PIRILYGILER Trigger: TCTCTCTAAGATCCCGTATAAGATTCTGATCGGGCATGACCACATCGTGAGTTCCTGCCACTTTTGTATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |
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CDS CAA 72 bp | GGTTTAACTCTTTTCTTCTTTATCTTCTTCTTCTTCTaGACATCAGGAGACCCCTTCCTGACCTGGTCAGGG | + |
Preference number: 6 (lower is better) Translates to: GLTLFFFIFFFF*TSGDPFLTWSG Trigger: CCCTGACCAGGTCAGGAAGGGGTCTCCTGATGTCAAGAAGAAGAAGAAGATAAAGAAGAAAAGAGTTAAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238407.2 |