RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WDR88 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000118454

Ensembl transcript IDs: ENSMUST00000238407.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp AAAGAGCTGTCTCTGGCAATGCAGCAGGAACTCACACAGCCCTCGTaGCCCTTCATCAGAGTCACGCAGGCTCCGCGGTTTCGAAACTCC +
Preference number: 5 (lower is better)
Translates to: KELSLAMQQELTQPS*PFIRVTQAPRFRNS
Trigger: GGAGTTTCGAAACCGCGGAGCCTGCGTGACTCTGATGAAGGGCCACGAGGGCTGTGTGAGTTCCTGCTGCATTGCCAGAGACAGCTCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS GCA 90 bp TCTTGCTATCGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTTaGTATCGGCCGAACTCTTCCTGCTGTCTACCGAAACTCTCCTGT +
Preference number: 5 (lower is better)
Translates to: SCYRPNPSCYRPNPS*YRPNSSCCLPKLSC
Trigger: ACAGGAGAGTTTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 90 bp CCCCAGAACTTCTTCACTGTTGCCATGTGGCTCTTCTCACGTGGCTaGCGATCCTTGTCTAAGGCCAGGGGGTCGTGGGAGGTCAGATTA +
Preference number: 5 (lower is better)
Translates to: PQNFFTVAMWLFSRG*RSLSKARGSWEVRL
Trigger: TAATCTGACCTCCCACGACCCCCTGGCCTTAGACAAGGATCGTCAGCCACGTGAGAAGAGCCACATGGCAACAGTGAAGAAGTTCTGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS GCA 90 bp GTTGCTAATAGCAACATCCGTCACCCAGTCCTCGTGGCCCTTCAATaGCAACTTCCGGTAGCCACCTCCTACATCCCAAATAGCCACAGT +
Preference number: 5 (lower is better)
Translates to: VANSNIRHPVLVALQ*QLPVATSYIPNSHS
Trigger: ACTGTGGCTATTTGGGATGTAGGAGGTGGCTACCGGAAGTTGGCATTGAAGGGCCACGAGGACTGGGTGACGGATGTTGCTATTAGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 90 bp CATCTTCAGCATCCCACAGCTTCACGGAGCAGTCGTAGGAGCTACTaGGGAACCTTGTGTCATTCATACAAAAGTGGCAGGAACTCACGA +
Preference number: 5 (lower is better)
Translates to: HLQHPTASRSSRRSY*GTLCHSYKSGRNSR
Trigger: TCGTGAGTTCCTGCCACTTTTGTATGAATGACACAAGGTTCCTCAGTAGCTCCTACGACTGCTCCGTGAAGCTGTGGGATGCTGAAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 90 bp CCGTTTTATCATAGGATGACGCCACTATCCTTCTGTTGTCAGCCGTaGTGCTGCACTCTAAAACAGGAGCTTTGGGTCGTGGCTCAAAGT +
Preference number: 5 (lower is better)
Translates to: PFYHRMTPLSFCCQP*CCTLKQELWVVAQS
Trigger: ACTTTGAGCCACGACCCAAAGCTCCTGTTTTAGAGTGCAGCATCACGGCTGACAACAGAAGGATAGTGGCGTCATCCTATGATAAAACGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 90 bp TGTTTTTATCCCAGGAGCTGGTACATAAGAAGTGGCCAGTGGAGGTaGAACAGCAGTCTGAGATGGCATTGTAATGCGCCTTGGGAATGG +
Preference number: 5 (lower is better)
Translates to: CFYPRSWYIRSGQWR*NSSLRWHCNAPWEW
Trigger: CCATTCCCAAGGCGCATTACAATGCCATCTCAGACTGCTGTTTCACCTCCACTGGCCACTTCTTATGTACCAGCTCCTGGGATAAAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS GCA 72 bp CGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTTaGTATCGGCCGAACTCTTCCTGCTGTCTACCGAAA +
Preference number: 6 (lower is better)
Translates to: RPNPSCYRPNPS*YRPNSSCCLPK
Trigger: TTTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp TCGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTaGCTATCGGCCGAACTCTTCCTGCTGTCTACCGAA +
Preference number: 6 (lower is better)
Translates to: SAEPLLLSAEPL*LSAELFLLSTE
Trigger: TTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 90 bp CTCTTGCTATCGGCCGAACCCCTCTTGCTATCGGCCGAACCCCTCTaGCTATCGGCCGAACTCTTCCTGCTGTCTACCGAAACTCTCCTG +
Preference number: 6 (lower is better)
Translates to: LLLSAEPLLLSAEPL*LSAELFLLSTETLL
Trigger: CAGGAGAGTTTCGGTAGACAGCAGGAAGAGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAGGGGTTCGGCCGATAGCAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 72 bp TTCTTCACTGTTGCCATGTGGCTCTTCTCACGTGGCTaGCGATCCTTGTCTAAGGCCAGGGGGTCGTGGGAG +
Preference number: 6 (lower is better)
Translates to: FFTVAMWLFSRG*RSLSKARGSWE
Trigger: CTCCCACGACCCCCTGGCCTTAGACAAGGATCGTCAGCCACGTGAGAAGAGCCACATGGCAACAGTGAAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS GCA 72 bp AGCAACATCCGTCACCCAGTCCTCGTGGCCCTTCAATaGCAACTTCCGGTAGCCACCTCCTACATCCCAAAT +
Preference number: 6 (lower is better)
Translates to: SNIRHPVLVALQ*QLPVATSYIPN
Trigger: ATTTGGGATGTAGGAGGTGGCTACCGGAAGTTGGCATTGAAGGGCCACGAGGACTGGGTGACGGATGTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 72 bp TCATCAGGGCCCATGGCACCTTGCTTTGTTGCGCCCTaGGAAAGGTGGGTTGAGATATTTCTCTGTCCTCAC +
Preference number: 6 (lower is better)
Translates to: SSGPMAPCFVAP*ERWVEIFLCPH
Trigger: GTGAGGACAGAGAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCCATGGGCCCTGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 72 bp CCCAGGAGCTGGTACATAAGAAGTGGCCAGTGGAGGTaGAACAGCAGTCTGAGATGGCATTGTAATGCGCCT +
Preference number: 6 (lower is better)
Translates to: PRSWYIRSGQWR*NSSLRWHCNAP
Trigger: AGGCGCATTACAATGCCATCTCAGACTGCTGTTTCACCTCCACTGGCCACTTCTTATGTACCAGCTCCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS GCA 72 bp ACGGATATCTGGGAGGGACAGCTTGAAAAGACCCAATaGTCTCATCAGGGCCCATGGCACCTTGCTTTGTTG +
Preference number: 6 (lower is better)
Translates to: TDIWEGQLEKTQ*SHQGPWHLALL
Trigger: CAACAAAGCAAGGTGCCATGGGCCCTGATGAGAGCATTGGGTCTTTTCAAGCTGTCCCTCCCAGATATCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp ACCCAATGCTCTCATCAGGGCCCATGGCACCTTGCTTaGTTGCGCCCTGAGAAAGGTGGGTTGAGATATTTC +
Preference number: 6 (lower is better)
Translates to: TQCSHQGPWHLA*LRPEKGGLRYF
Trigger: GAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCCATGGGCCCTGATGAGAGCATTGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 90 bp TTGGGAATGGTAAACAGCGTGGTTCGGGATGTGATGTCCCAGATCTaGATACACCTGTCCATGGAGACAGAAGCCACCTTCTGGCTGTCA +
Preference number: 6 (lower is better)
Translates to: LGMVNSVVRDVMSQI*IHLSMETEATFWLS
Trigger: TGACAGCCAGAAGGTGGCTTCTGTCTCCATGGACAGGTGTATCAAGATCTGGGACATCACATCCCGAACCACGCTGTTTACCATTCCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 72 bp CATCCCACAGCTTCACGGAGCAGTCGTAGGAGCTACTaGGGAACCTTGTGTCATTCATACAAAAGTGGCAGG +
Preference number: 6 (lower is better)
Translates to: HPTASRSSRRSY*GTLCHSYKSGR
Trigger: CCTGCCACTTTTGTATGAATGACACAAGGTTCCTCAGTAGCTCCTACGACTGCTCCGTGAAGCTGTGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 72 bp CTCAACGTCCCAAGCCCTCACCGTTTTATCATAGGATaGCGCCACTATCCTTCTGTTGTCAGCCGTGATGCT +
Preference number: 6 (lower is better)
Translates to: LNVPSPHRFIIG*RHYPSVVSRDA
Trigger: AGCATCACGGCTGACAACAGAAGGATAGTGGCGTCATCCTATGATAAAACGGTGAGGGCTTGGGACGTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp CAATGCTCTCATCAGGGCCCATGGCACCTTGCTTTGTaGCGCCCTGAGAAAGGTGGGTTGAGATATTTCTCT +
Preference number: 6 (lower is better)
Translates to: QCSHQGPWHLAL*RPEKGGLRYFS
Trigger: AGAGAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCCATGGGCCCTGATGAGAGCATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 90 bp AGTCTCATGGAACTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTaGTTGCTAATAGCAACATCCGTCACCCAGTCCTCGTGGCCCTTC +
Preference number: 6 (lower is better)
Translates to: SLMELSFEAERIHFL*LLIATSVTQSSWPF
Trigger: GAAGGGCCACGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAGTTCCATGAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 72 bp GATTATAATACCGACGGATATCTGGGAGGGACAGCTTaGAAAGACCCAATGCTCTCATCAGGGCCCATGGCA +
Preference number: 6 (lower is better)
Translates to: DYNTDGYLGGTA*KDPMLSSGPMA
Trigger: TGCCATGGGCCCTGATGAGAGCATTGGGTCTTTTCAAGCTGTCCCTCCCAGATATCCGTCGGTATTATAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp TTGTCAGCCGTGATGCTGCACTCTAAAACAGGAGCTTaGGGTCGTGGCTCAAAGTCCCAAATCACAGTTCCA +
Preference number: 6 (lower is better)
Translates to: LSAVMLHSKTGA*GRGSKSQITVP
Trigger: TGGAACTGTGATTTGGGACTTTGAGCCACGACCCAAAGCTCCTGTTTTAGAGTGCAGCATCACGGCTGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp CTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTTGTaGCTAATAGCAACATCCGTCACCCAGTCCTCGTGG +
Preference number: 6 (lower is better)
Translates to: LSFEAERIHFLL*LIATSVTQSSW
Trigger: CCACGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 90 bp ATCCTTCTGTTGTCAGCCGTGATGCTGCACTCTAAAACAGGAGCTTaGGGTCGTGGCTCAAAGTCCCAAATCACAGTTCCATCTTCAGCA +
Preference number: 6 (lower is better)
Translates to: ILLLSAVMLHSKTGA*GRGSKSQITVPSSA
Trigger: TGCTGAAGATGGAACTGTGATTTGGGACTTTGAGCCACGACCCAAAGCTCCTGTTTTAGAGTGCAGCATCACGGCTGACAACAGAAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 90 bp CTCATGGAACTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTTGTaGCTAATAGCAACATCCGTCACCCAGTCCTCGTGGCCCTTCAAT +
Preference number: 6 (lower is better)
Translates to: LMELSFEAERIHFLL*LIATSVTQSSWPFN
Trigger: ATTGAAGGGCCACGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAGTTCCATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS TCA 72 bp GGCACCTTGCTTTGTTGCGCCCTGAGAAAGGTGGGTTaGGATATTTCTCTGTCCTCACTGAAATCCATCTTC +
Preference number: 6 (lower is better)
Translates to: GTLLCCALRKVG*DISLSSLKSIF
Trigger: GAAGATGGATTTCAGTGAGGACAGAGAAATATCTCAACCCACCTTTCTCAGGGCGCAACAAAGCAAGGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp CCCTTCCACCAACTGTCCTCGACGAAATCCAACTTCTaGGAGTCAAGATCCCCCTTCGGTTTAACTCTTTTC +
Preference number: 6 (lower is better)
Translates to: PFHQLSSTKSNF*ESRSPFGLTLF
Trigger: GAAAAGAGTTAAACCGAAGGGGGATCTTGACTCCAAGAAGTTGGATTTCGTCGAGGACAGTTGGTGGAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp GGGCTAAATCTGTTCTTACTATCGACTGAACCCCTCTaGCTATCGACTGAACCCCTCTTGCTATCGACCGAA +
Preference number: 6 (lower is better)
Translates to: GLNLFLLSTEPL*LSTEPLLLSTE
Trigger: TTCGGTCGATAGCAAGAGGGGTTCAGTCGATAGCAAGAGGGGTTCAGTCGATAGTAAGAACAGATTTAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp GAACTGTCCTTTGAAGCCGAGAGGATCCATTTCTTGTaGTTGCTAATAGCAACATCCGTCACCCAGTCCTCG +
Preference number: 6 (lower is better)
Translates to: ELSFEAERIHFL*LLIATSVTQSS
Trigger: CGAGGACTGGGTGACGGATGTTGCTATTAGCAACAACAAGAAATGGATCCTCTCGGCTTCAAAGGACAGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp ACCAAGACCCAATTGTACTCGGCAAAATCCAAATTCTaGTTCTTAAGAGACCCCTTCCACCAACTGTCCTCG +
Preference number: 6 (lower is better)
Translates to: TKTQLYSAKSKF*FLRDPFHQLSS
Trigger: CGAGGACAGTTGGTGGAAGGGGTCTCTTAAGAACAAGAATTTGGATTTTGCCGAGTACAATTGGGTCTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS GCA 72 bp TTCATACAAAAGTGGCAGGAACTCACGATGTGGTCATaGCCGATCAGAATCTTATACGGGATCTTAGAGAGA +
Preference number: 6 (lower is better)
Translates to: FIQKWQELTMWS*PIRILYGILER
Trigger: TCTCTCTAAGATCCCGTATAAGATTCTGATCGGGCATGACCACATCGTGAGTTCCTGCCACTTTTGTATGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2
CDS CAA 72 bp GGTTTAACTCTTTTCTTCTTTATCTTCTTCTTCTTCTaGACATCAGGAGACCCCTTCCTGACCTGGTCAGGG +
Preference number: 6 (lower is better)
Translates to: GLTLFFFIFFFF*TSGDPFLTWSG
Trigger: CCCTGACCAGGTCAGGAAGGGGTCTCCTGATGTCAAGAAGAAGAAGAAGATAAAGAAGAAAAGAGTTAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238407.2