Pregenerated sensors for WDR82 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020257Ensembl transcript IDs: ENSMUST00000020490.13, ENSMUST00000190564.2, ENSMUST00000217532.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGAAGAATAACACTTGTGGCACACACTATCCACAGAGTCATTCTTaGCTGCAAGGTTCCCTCTCCCTTGATAATCTAGATGAGAGACAG | + |
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Preference number: 1 (lower is better) Translates to: EKNNTCGTHYPQSHS*LQGSLSLDNLDERQ Trigger: CTGTCTCTCATCTAGATTATCAAGGGAGAGGGAACCTTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR GCA 90 bp | CCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTaGCATATTAATCTACGATTACAGACATTTGCCTTCAACAGTTCT | + |
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Preference number: 1 (lower is better) Translates to: PWTLKTVFLRSVQAS*HINLRLQTFAFNSS Trigger: AGAACTGTTGAAGGCAAATGTCTGTAATCGTAGATTAATATGGCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR TCA 90 bp | CCTTTTCCTACCAATTCGGAACATAACTCAGGTCTGTGGCCTCAGGGCCCAGCAAGGCTGAGCGCCAACTaGGTCTGCAGCACCAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: PFPTNSEHNSGLWPQGPARLSAN*VCSTRS Trigger: ACTCCTGGTGCTGCAGACTCAGTTGGCGCTCAGCCT...TGCTGGGCCCTGAGGCCACAGACCTGAGTTATGTTCCGAATTGGTAGGAAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR TCA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCAAGAGCTTGGCGCAGTaGGAGCTGGAAAGGCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: FNPWTLKTVFLRSVQASCKSLAQ*ELERLS Trigger: GCTCAGCCTTTCCAGCTCTCACTGCGCCAAGCTCTT...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR TCA 90 bp | AGGCACAGAAGCCATGCAAAAGTGACTGTCACACATACACAGGTGCAGACAGAGGAGGGCAAGGGGTGCTaGGCTGCCCTAGCATCTCAA | + |
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Preference number: 2 (lower is better) Translates to: RHRSHAKVTVTHTQVQTEEGKGC*AALASQ Trigger: TTGAGATGCTAGGGCAGCTCAGCACCCCTTGCCCTC...CTCTGTCTGCACCTGTGTATGTGTGACAGTCACTTTTGCATGGCTTCTGTGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CCA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCTGGACAGCACATCCCTaGGAAGGCCCCGTGGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: FNPWTLKTVFLRSVQASCWTAHP*EGPVER Trigger: TCTTTCCACGGGGCCTTCCCAGGGATGTGCTGTCCA...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CCA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCCCTAGAGCCAGCTCTTaGGTAGGAGCTGGAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: FNPWTLKTVFLRSVQASCPRASS*VGAGEE Trigger: CTCTTCTCCAGCTCCTACCCAAGAGCTGGCTCTAGG...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CCA 90 bp | AGGCACAGAAGCCATGCAAAAGTGACTGTCACACATACACAGGTGCAGACAGAGGAGGGCCCCGAAGTGTaGCTTAAAGAGCACAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: RHRSHAKVTVTHTQVQTEEGPEV*LKEHKG Trigger: TCCCTTGTGCTCTTTAAGCCACACTTCGGGGCCCTC...CTCTGTCTGCACCTGTGTATGTGTGACAGTCACTTTTGCATGGCTTCTGTGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR TCA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCAGTCAAAAGCATTGGTaGCTGGACGGCTATCTGCGA | + |
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Preference number: 2 (lower is better) Translates to: FNPWTLKTVFLRSVQASCSQKHW*LDGYLR Trigger: TCGCAGATAGCCGTCCAGTCACCAATGCTTTTGACT...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR TCA 90 bp | CCTTTTCCTACCAATTCGGAACATAACTCAGGTCTGTGGCCTCAGGGCCCAGCATTTCAAACATGGAGCTaGTTGCCTGGCTCCTTCTGT | + |
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Preference number: 2 (lower is better) Translates to: PFPTNSEHNSGLWPQGPAFQTWS*LPGSFC Trigger: ACAGAAGGAGCCAGGCAATCAGCTCCATGTTTGAAA...TGCTGGGCCCTGAGGCCACAGACCTGAGTTATGTTCCGAATTGGTAGGAAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CAA 90 bp | CTGAGCACGCTAGCAGCTGGGTACTCTTGGGCAAATCACAACCTGTaGAGTCTTGATTTCTGGATCTGCAGGGATAGTGCTTGCATCAAT | + |
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Preference number: 2 (lower is better) Translates to: LSTLAAGYSWANHNL*SLDFWICRDSACIN Trigger: ATTGATGCAAGCACTATCCCTGCAGATCCAGAAATCAAGACTCAACAGGTTGTGATTTGCCCAAGAGTACCCAGCTGCTAGCGTGCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CCA 90 bp | GAGAAGAATAACACTTGTGGCACACACTATCCACAGAGTCATTCTTGGCTGCAACCCCACAGGAGACTGTaGGATCATCTTGATGGGGGA | + |
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Preference number: 2 (lower is better) Translates to: EKNNTCGTHYPQSHSWLQPHRRL*DHLDGG Trigger: TCCCCCATCAAGATGATCCCACAGTCTCCTGTGGGG...TTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR GCA 90 bp | GTATCCCTAAGGTTAACAGAGAAGAATAACACTTGTGGCACACACTATCCACAGAACCGCGGCTTCCCATaGATTTCTGGGGTGAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: VSLRLTEKNNTCGTHYPQNRGFP*ISGVRR Trigger: CCTTCTCACCCCAGAAATGCATGGGAAGCCGCGGTT...CTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTCTGTTAACCTTAGGGATAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CCA 90 bp | GAGAAGAATAACACTTGTGGCACACACTATCCACAGAGTCATTCTTGGCTGCAAAGGATGTGCAGAAAGTaGGGACTTCACTGGCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: EKNNTCGTHYPQSHSWLQRMCRK*GLHWLL Trigger: GAGGAGCCAGTGAAGTCCCCACTTTCTGCACATCCT...TTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR TCA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCCAGGAGAACGTGATGTaGCTCAGGTACAAAAATAAA | + |
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Preference number: 2 (lower is better) Translates to: FNPWTLKTVFLRSVQASCQENVM*LRYKNK Trigger: TTTATTTTTGTACCTGAGTCACATCACGTTCTCCTG...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR GCA 90 bp | GTATCCCTAAGGTTAACAGAGAAGAATAACACTTGTGGCACACACTATCCACAGCAAGGGGTGCTGAGCTaGCCTAGCATCTCAAAACCA | + |
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Preference number: 2 (lower is better) Translates to: VSLRLTEKNNTCGTHYPQQGVLS*PSISKP Trigger: TGGTTTTGAGATGCTAGGGCAGCTCAGCACCCCTTG...CTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTCTGTTAACCTTAGGGATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR GCA 90 bp | GTATCCCTAAGGTTAACAGAGAAGAATAACACTTGTGGCACACACTATCCACAGCTCTCAGAATTTACCTaGTACCCCCTTCCCTCCCTT | + |
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Preference number: 2 (lower is better) Translates to: VSLRLTEKNNTCGTHYPQLSEFT*YPLPSL Trigger: AAGGGAGGGAAGGGGGTAGCAGGTAAATTCTGAGAG...CTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTCTGTTAACCTTAGGGATAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CAA 90 bp | ATCACCACACCCTTGAATGCGTCAATCAGTCGGATAAAGCTGCCGTaGGTGGAGATGAGTATCAATTTGCCATCATTGCTGAACTTAAGT | + |
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Preference number: 2 (lower is better) Translates to: ITTPLNASISRIKLP*VEMSINLPSLLNLS Trigger: ACTTAAGTTCAGCAATGATGGCAAATTGATACTCATCTCCACCAACGGCAGCTTTATCCGACTGATTGACGCATTCAAGGGTGTGGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000190564.2 ENSMUST00000217532.2 |
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| 3UTR-3UTR GCA 90 bp | GAGAAGAATAACACTTGTGGCACACACTATCCACAGAGTCATTCTTGGCTGCAATGTAATGTGCATGTCTaGACAAATGTATTAAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: EKNNTCGTHYPQSHSWLQCNVHV*TNVLKW Trigger: CCACTTTAATACATTTGTGCAGACATGCACATTACA...TTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR TCA 72 bp | GTGACTGGACGGCTATCTGCGACTGAACAGAAGCAGTaGTGGTCTGAGCACGCTAGCAGCTGGGTACTCTTG | + |
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Preference number: 3 (lower is better) Translates to: VTGRLSATEQKQ*WSEHASSWVLL Trigger: CAAGAGTACCCAGCTGCTAGCGTGCTCAGACCATCACTGCTTCTGTTCAGTCGCAGATAGCCGTCCAGTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR TCA 72 bp | ACTCAGGTCTGTGGCCTCAGGGCCCAGCAGAGACCGTaGGGCGGTATGTCTTCTAAGAGTGTGATGCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: TQVCGLRAQQRP*GGMSSKSVMLQ Trigger: TTGAAGCATCACACTCTTAGAAGACATACCGCCTCACGGTCTCTGCTGGGCCCTGAGGCCACAGACCTGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR TCA 72 bp | GAACAGTGCAGTGCCAGCTGTCATATCAGAGGGCAGTaGATACATCCCAGGGACACATCCCCAAACTGCCAT | + |
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Preference number: 3 (lower is better) Translates to: EQCSASCHIRGQ*IHPRDTSPNCH Trigger: ATGGCAGTTTGGGGATGTGTCCCTGGGATGTATTCACTGCCCTCTGATATGACAGCTGGCACTGCACTGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR GCA 72 bp | ACTCTAAAGCTGCCGAGCTGGGAAGAGAAGGTCACCTaGAACTCATCTAGTCTGGGCCTAGCTAAAGTCTCT | + |
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Preference number: 3 (lower is better) Translates to: TLKLPSWEEKVT*NSSSLGLAKVS Trigger: AGAGACTTTAGCTAGGCCCAGACTAGATGAGTTGCAGGTGACCTTCTCTTCCCAGCTCGGCAGCTTTAGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CCA 72 bp | ATCTCAAAACCAGAACCGCGGCTTCCCATGCATTTCTaGGGTGAGAAGGATGTGCAGAAAGTGGGGACTTCA | + |
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Preference number: 3 (lower is better) Translates to: ISKPEPRLPMHF*GEKDVQKVGTS Trigger: TGAAGTCCCCACTTTCTGCACATCCTTCTCACCCCAGAAATGCATGGGAAGCCGCGGTTCTGGTTTTGAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CAA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCCGAGTACATTCAAAATaGAAGGGGTTCAAGAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: FNPWTLKTVFLRSVQASCRVHSK*KGFKSP Trigger: GGGGCTCTTGAACCCCTTCAATTTTGAATGTACTCG...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CAA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCCTCCCTTTCAGACTCTaGGGCCTTTTGTTAGTCAAC | + |
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Preference number: 3 (lower is better) Translates to: FNPWTLKTVFLRSVQASCLPFRL*GLLLVN Trigger: GTTGACTAACAAAAGGCCCAAGAGTCTGAAAGGGAG...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR GCA 72 bp | TTTGCCTTCAACAGTTCTTTCAAACATGGAGCTGATTaGCTGGCTCCTTCTGTCGGTCCATTCTGGGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: FAFNSSFKHGAD*LAPSVGPFWEG Trigger: GCCTTCCCAGAATGGACCGACAGAAGGAGCCAGGCAATCAGCTCCATGTTTGAAAGAACTGTTGAAGGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CCA 72 bp | AGTGATGGTCTGAGCACGCTAGCAGCTGGGTACTCTTaGGCAAATCACAACCTGTTGAGTCTTGATTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: SDGLSTLAAGYS*ANHNLLSLDFW Trigger: CCAGAAATCAAGACTCAACAGGTTGTGATTTGCCCAAGAGTACCCAGCTGCTAGCGTGCTCAGACCATCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CCA 72 bp | CCTTCAACAGTTCTTTCAAACATGGAGCTGATTGCCTaGCTCCTTCTGTCGGTCCATTCTGGGAAGGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: PSTVLSNMELIA*LLLSVHSGKAE Trigger: TTCTGCCTTCCCAGAATGGACCGACAGAAGGAGCCAGGCAATCAGCTCCATGTTTGAAAGAACTGTTGAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CAA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCTACCTGTTTCTTTCTTaGACCCCAAGGTATATGAAG | + |
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Preference number: 3 (lower is better) Translates to: FNPWTLKTVFLRSVQASCYLFLS*TPRYMK Trigger: CTTCATATACCTTGGGGTCAAAGAAAGAAACAGGTA...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR GCA 72 bp | GATGCTTCAACCCCTGGACACTCAAGACAGTTTTCCTaGGTTCAGTTCAGGCAAGCTGCCATATTAATCTAC | + |
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Preference number: 3 (lower is better) Translates to: DASTPGHSRQFS*VQFRQAAILIY Trigger: GTAGATTAATATGGCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAAGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CAA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCAAAATAAACTACTGCTaGCTTTTGTACAAGCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: FNPWTLKTVFLRSVQASCKINYC*LLYKPS Trigger: GCTTGGCTTGTACAAAAGCAAGCAGTAGTTTATTTT...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CAA 90 bp | AGGCACAGAAGCCATGCAAAAGTGACTGTCACACATACACAGGTGCAGACAGAGGAGGGGTTTCATCTGTaGACTATGTACACAATTTGT | + |
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Preference number: 3 (lower is better) Translates to: RHRSHAKVTVTHTQVQTEEGFHL*TMYTIC Trigger: ACAAATTGTGTACATAGTCAACAGATGAAACCCCTC...CTCTGTCTGCACCTGTGTATGTGTGACAGTCACTTTTGCATGGCTTCTGTGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR-3UTR CAA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCAGTCCAACTTTTCAGTaGGAACAAGTCAAAAGCATT | + |
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Preference number: 3 (lower is better) Translates to: FNPWTLKTVFLRSVQASCSPTFQ*EQVKSI Trigger: AATGCTTTTGACTTGTTCCAACTGAAAAGTTGGACT...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CCA 72 bp | AACACTTGTGGCACACACTATCCACAGAGTCATTCTTaGCTGCAAGGTTCCCTCTCCCTTGATAATCTAGAT | + |
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Preference number: 3 (lower is better) Translates to: NTCGTHYPQSHS*LQGSLSLDNLD Trigger: ATCTAGATTATCAAGGGAGAGGGAACCTTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR GCA 72 bp | CTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTaGCATATTAATCTACGATTACAGACATTTGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: LKTVFLRSVQAS*HINLRLQTFAF Trigger: GAAGGCAAATGTCTGTAATCGTAGATTAATATGGCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR TCA 90 bp | GAACCGCGGCTTCCCATGCATTTCTGGGGTGAGAAGGATGTGCAGAAAGTGGGGGCAGTTGATCTTGTCTaGGTTCTCGCGGAACACCTT | + |
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Preference number: 4 (lower is better) Translates to: EPRLPMHFWGEKDVQKVGAVDLV*VLAEHL Trigger: AAGGTGTTCCGCGAGAACTCAGACAAGATCAACTGC...CCCCACTTTCTGCACATCCTTCTCACCCCAGAAATGCATGGGAAGCCGCGGTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR GCA 90 bp | AGGCACAGAAGCCATGCAAAAGTGACTGTCACACATACACAGGTGCAGACAGAGAACGACTGTGTTGGCTaGATGGGTGTATCTGATGAG | + |
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Preference number: 4 (lower is better) Translates to: RHRSHAKVTVTHTQVQTENDCVG*MGVSDE Trigger: CTCATCAGATACACCCATGCAGCCAACACAGTCGTT...CTCTGTCTGCACCTGTGTATGTGTGACAGTCACTTTTGCATGGCTTCTGTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR CCA 90 bp | GAGAAGAATAACACTTGTGGCACACACTATCCACAGAGTCATTCTTGGCTGCAAACCAGAAGGCCATGTTaGAACAGGCGCTGGCAAAGG | + |
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Preference number: 4 (lower is better) Translates to: EKNNTCGTHYPQSHSWLQTRRPC*NRRWQR Trigger: CCTTTGCCAGCGCCTGTTCCAACATGGCCTTCTGGT...TTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CAA 72 bp | CTAGCAGCTGGGTACTCTTGGGCAAATCACAACCTGTaGAGTCTTGATTTCTGGATCTGCAGGGATAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LAAGYSWANHNL*SLDFWICRDSA Trigger: AGCACTATCCCTGCAGATCCAGAAATCAAGACTCAACAGGTTGTGATTTGCCCAAGAGTACCCAGCTGCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CAA 72 bp | CCCTTGAATGCGTCAATCAGTCGGATAAAGCTGCCGTaGGTGGAGATGAGTATCAATTTGCCATCATTGCTG | + |
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Preference number: 4 (lower is better) Translates to: PLNASISRIKLP*VEMSINLPSLL Trigger: CAGCAATGATGGCAAATTGATACTCATCTCCACCAACGGCAGCTTTATCCGACTGATTGACGCATTCAAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000190564.2 ENSMUST00000217532.2 |
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| CDS-3UTR GCA 90 bp | CCTTTTCCTACCAATTCGGAACATAACTCAGGTCTGTGGCCTCAGGGCCCAGCACTGCATCTTAAATGTTaGAAATGGTCCCTTATCAAA | + |
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Preference number: 4 (lower is better) Translates to: PFPTNSEHNSGLWPQGPALHLKC*KWSLIK Trigger: TTTGATAAGGGACCATTTGCAACATTTAAGATGCAG...TGCTGGGCCCTGAGGCCACAGACCTGAGTTATGTTCCGAATTGGTAGGAAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CAA 72 bp | ACAGTCCAACTTTTCAGTTGGAACAAGTCAAAAGCATaGGTGACTGGACGGCTATCTGCGACTGAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: TVQLFSWNKSKA*VTGRLSATEQK Trigger: CTTCTGTTCAGTCGCAGATAGCCGTCCAGTCACCAATGCTTTTGACTTGTTCCAACTGAAAAGTTGGACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR TCA 90 bp | GTATCCCTAAGGTTAACAGAGAAGAATAACACTTGTGGCACACACTATCCACAGAAGTTTGACCATTTCTaGGTTGACGCCCGCAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: VSLRLTEKNNTCGTHYPQKFDHF*VDARSK Trigger: TTTGCTGCGGGCGTCAACTCAGAAATGGTCAAACTT...CTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTCTGTTAACCTTAGGGATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CAA 72 bp | AGGCAAGCTGCCATATTAATCTACGATTACAGACATTaGCCTTCAACAGTTCTTTCAAACATGGAGCTGATT | + |
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Preference number: 4 (lower is better) Translates to: RQAAILIYDYRH*PSTVLSNMELI Trigger: AATCAGCTCCATGTTTGAAAGAACTGTTGAAGGCAAATGTCTGTAATCGTAGATTAATATGGCAGCTTGCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| 3UTR CAA 72 bp | GAACATTTAACATCAAGATTTAAACAGTGGTACCACTaGGGTGGCAAACTGGTTCTTAAAGATCTTCCAATT | + |
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Preference number: 4 (lower is better) Translates to: EHLTSRFKQWYH*GGKLVLKDLPI Trigger: AATTGGAAGATCTTTAAGAACCAGTTTGCCACCCAAGTGGTACCACTGTTTAAATCTTGATGTTAAATGTTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR CAA 90 bp | CCTTTTCCTACCAATTCGGAACATAACTCAGGTCTGTGGCCTCAGGGCCCAGCATGCATCACCACACCCTaGAATGCGTCAATCAGTCGG | + |
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Preference number: 5 (lower is better) Translates to: PFPTNSEHNSGLWPQGPACITTP*NASISR Trigger: CCGACTGATTGACGCATTCAAGGGTGTGGTGATGCA...TGCTGGGCCCTGAGGCCACAGACCTGAGTTATGTTCCGAATTGGTAGGAAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR CAA 90 bp | TTCAACCCCTGGACACTCAAGACAGTTTTCCTGCGTTCAGTTCAGGCAAGCTGCAACCAGAAGGCCATGTaGGAACAGGCGCTGGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: FNPWTLKTVFLRSVQASCNQKAM*EQALAK Trigger: CTTTGCCAGCGCCTGTTCCAACATGGCCTTCTGGTT...GCAGCTTGCCTGAACTGAACGCAGGAAAACTGTCTTGAGTGTCCAGGGGTTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR CAA 90 bp | GAGAAGAATAACACTTGTGGCACACACTATCCACAGAGTCATTCTTGGCTGCAAATGACCGTCTCGCCATaGGGACTAAAGTCAAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: EKNNTCGTHYPQSHSWLQMTVSP*GLKSKQ Trigger: CTGCTTTGACTTTAGTCCCAATGGCGAGACGGTCAT...TTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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| CDS-3UTR CAA 90 bp | GAGAAGAATAACACTTGTGGCACACACTATCCACAGAGTCATTCTTGGCTGCAACTAAAGTCAAAGCAGTaGATCTTGTCTGAGTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: EKNNTCGTHYPQSHSWLQLKSKQ*ILSEFS Trigger: CGAGAACTCAGACAAGATCAACTGCTTTGACTTTAG...TTGCAGCCAAGAATGACTCTGTGGATAGTGTGTGCCACAAGTGTTATTCTTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020490.13 |
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