RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WDR66 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029442

Ensembl transcript IDs: ENSMUST00000121964.8, ENSMUST00000150155.8, ENSMUST00000163092.8, ENSMUST00000170536.2

Found 334 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCGGGGTATGAGCGGCTGGCTATGACGTCCATGCAGCACAGACTCTaGTGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGCTGTCAGGCC +
Preference number: 1 (lower is better)
Translates to: SGYERLAMTSMQHRL*WLRLLQAWRSSCQA
Trigger: GGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCAGCAGAGTCTGTGCTGCATGGACGTCATAGCCAGCCGCTCATACCCCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CCA 90 bp ACGTCCATGCAGCACAGACTCTGCTGGCTGAGGCTCCTTCAGGCCTaGCGATCCAGCTGTCAGGCCTGTTCTCGCTTCCGCCTACTCTTC +
Preference number: 1 (lower is better)
Translates to: TSMQHRLCWLRLLQA*RSSCQACSRFRLLF
Trigger: GAAGAGTAGGCGGAAGCGAGAACAGGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCAGCAGAGTCTGTGCTGCATGGACGT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR GCA 90 bp CCAAGGGAAACGGCAGCCTCCAGGGCCCCTAAGTTAATTTTCCACTaGACCACTGAGCGATCTTGGCCTCCGGCTGTGAAGGCAAAGCGG +
Preference number: 1 (lower is better)
Translates to: PRETAASRAPKLIFH*TTERSWPPAVKAKR
Trigger: CCGCTTTGCCTTCACAGCCGGAGGCCAAGATCGCTCAGTGGTGCAGTGGAAAATTAACTTAGGGGCCCTGGAGGCTGCCGTTTCCCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CCA 90 bp AGCATCTGCCATTTGCATCCTTCAGGAGCAGGACCCCGTGGCTTCTaGGCCACCTGCAGTTTGCGGGACCCAGGTTGCTTCTGCATTCTC +
Preference number: 1 (lower is better)
Translates to: SICHLHPSGAGPRGF*ATCSLRDPGCFCIL
Trigger: GAGAATGCAGAAGCAACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGGATGCAAATGGCAGATGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR GCA 90 bp AAGTATCGCTTCTGCAGCTCTAGCGTGGATTTTACGGGGAGCACCTaGGCATGCTCAATAGGCGACCCATACGCCGGTCCAAGGAGCGTC +
Preference number: 1 (lower is better)
Translates to: KYRFCSSSVDFTGST*ACSIGDPYAGPRSV
Trigger: GACGCTCCTTGGACCGGCGTATGGGTCGCCTATTGAGCATGCGCAGGTGCTCCCCGTAAAATCCACGCTAGAGCTGCAGAAGCGATACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 90 bp AAGCTCTTTCTGGAGGCAGATTTCTGGACCGTTGATGCAGGTGGCTaGAGGCTCCGATTTCCACCCCTCCGGAGTCAGGCCAAACAGAGT +
Preference number: 1 (lower is better)
Translates to: KLFLEADFWTVDAGG*RLRFPPLRSQAKQS
Trigger: ACTCTGTTTGGCCTGACTCCGGAGGGGTGGAAATCGGAGCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTGCCTCCAGAAAGAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CCA 90 bp GGCCACCTGCAGTTTGCGGGACCCAGGTTGCTTCTGCATTCTCTTTaGCAGTTGTCACCGGGGTTAGGCATGACTGGTGATGCTTGCTGT +
Preference number: 1 (lower is better)
Translates to: GHLQFAGPRLLLHSL*QLSPGLGMTGDACC
Trigger: ACAGCAAGCATCACCAGTCATGCCTAACCCCGGTGACAACTGCCAAAGAGAATGCAGAAGCAACCTGGGTCCCGCAAACTGCAGGTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR TCA 90 bp CACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGTCACTGAATaGGCTGTTCCGAGCTGTCGGAAAGGGTTAAGCCAAGAATTTCCG +
Preference number: 1 (lower is better)
Translates to: HGALCAASIANDVTE*AVPSCRKGLSQEFP
Trigger: CGGAAATTCTTGGCTTAACCCTTTCCGACAGCTCGGAACAGCTCATTCAGTGACGTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 90 bp TCTCTTTGGCAGTTGTCACCGGGGTTAGGCATGACTGGTGATGCTTaGTGTCATGGCCACACACAACTGCTTGGGTGTTTTGCTGGGAAG +
Preference number: 1 (lower is better)
Translates to: SLWQLSPGLGMTGDA*CHGHTQLLGCFAGK
Trigger: CTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAACCCCGGTGACAACTGCCAAAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CCA 90 bp TCCGTGGTGAATATTTCTGCAGTGATTTCCTCGGGAAGCTCTTTCTaGAGGCAGATTTCTGGACCGTTGATGCAGGTGGCTGCAGGCTCC +
Preference number: 1 (lower is better)
Translates to: SVVNISAVISSGSSF*RQISGPLMQVAAGS
Trigger: GGAGCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTGCCTCCAGAAAGAGCTTCCCGAGGAAATCACTGCAGAAATATTCACCACGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 90 bp TCTGCATTCTCTTTGGCAGTTGTCACCGGGGTTAGGCATGACTGGTaGTGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTTGC +
Preference number: 1 (lower is better)
Translates to: SAFSLAVVTGVRHDW*CLLSWPHTTAWVFC
Trigger: GCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAACCCCGGTGACAACTGCCAAAGAGAATGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR GCA 90 bp ATGCTCAATAGGCGACCCATACGCCGGTCCAAGGAGCGTCTTTACTaGATAGTTGAGCTGCATTTGTCAGGACTCCATAGAGAGAAACGC +
Preference number: 1 (lower is better)
Translates to: MLNRRPIRRSKERLY*IVELHLSGLHREKR
Trigger: GCGTTTCTCTCTATGGAGTCCTGACAAATGCAGCTCAACTATGCAGTAAAGACGCTCCTTGGACCGGCGTATGGGTCGCCTATTGAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 90 bp TGGAGTCCAACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTaGAGCTCTAGCGTGGATTTTACGGGGAGCACCTGCGCATGCTCA +
Preference number: 1 (lower is better)
Translates to: WSPTLSLLMNTKYRF*SSSVDFTGSTCACS
Trigger: TGAGCATGCGCAGGTGCTCCCCGTAAAATCCACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTTGGACTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 90 bp TGTCCTCAATCTTCTCCTCTGACGGGTAAAAACCGATCGCTCTCATaGCAAAAGGAAGCTCCGACAGGCAAATATGTTCCGACACCTGCC +
Preference number: 1 (lower is better)
Translates to: CPQSSPLTGKNRSLS*QKEAPTGKYVPTPA
Trigger: GGCAGGTGTCGGAACATATTTGCCTGTCGGAGCTTCCTTTTGTCATGAGAGCGATCGGTTTTTACCCGTCAGAGGAGAAGATTGAGGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CCA 90 bp CACGTTGAAGCTGTTCTGGATGCCGTCCATAGTGTTGCCGAAAGGTaGCCTATGGTTAAGGTAAACTTTGAGGAAATCCGGGAGGTTGAT +
Preference number: 1 (lower is better)
Translates to: HVEAVLDAVHSVAER*PMVKVNFEEIREVD
Trigger: ATCAACCTCCCGGATTTCCTCAAAGTTTACCTTAACCATAGGCCACCTTTCGGCAACACTATGGACGGCATCCAGAACAGCTTCAACGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 90 bp CCAAACAGAGTCGAGAAACAGTCGATCATCTCTTCTTCTGTCATGTaGTCCCCTTTGGTGAGGAGTAAGTTCAGGAAATCCTCTCTCCGA +
Preference number: 1 (lower is better)
Translates to: PNRVEKQSIISSSVM*SPLVRSKFRKSSLR
Trigger: TCGGAGAGAGGATTTCCTGAACTTACTCCTCACCAAAGGGGAGCACATGACAGAAGAAGAGATGATCGACTGTTTCTCGACTCTGTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 90 bp AGAAACAGTCGATCATCTCTTCTTCTGTCATGTGCTCCCCTTTGGTaGGGAGTAAGTTCAGGAAATCCTCTCTCCGAATGGCCTTTTTCC +
Preference number: 1 (lower is better)
Translates to: RNSRSSLLLSCAPLW*GVSSGNPLSEWPFS
Trigger: GGAAAAAGGCCATTCGGAGAGAGGATTTCCTGAACTTACTCCTCACCAAAGGGGAGCACATGACAGAAGAAGAGATGATCGACTGTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 90 bp TATGTTCCGACACCTGCCTGGTCTCCATTGTATCGATACCTTGACTaGGGATCTGAGAGTAGTAAAAATAGTCCTCCAACTCCCTGTAGA +
Preference number: 1 (lower is better)
Translates to: YVPTPAWSPLYRYLD*GSESSKNSPPTPCR
Trigger: TCTACAGGGAGTTGGAGGACTATTTTTACTACTCTCAGATCCGCAGTCAAGGTATCGATACAATGGAGACCAGGCAGGTGTCGGAACATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 90 bp TTCGCTGAACTTGATCTCATTAAACATGTCCTCAATCTTCTCCTCTaGCGGGTAAAAACCGATCGCTCTCATGACAAAAGGAAGCTCCGA +
Preference number: 1 (lower is better)
Translates to: FAELDLIKHVLNLLL*RVKTDRSHDKRKLR
Trigger: TCGGAGCTTCCTTTTGTCATGAGAGCGATCGGTTTTTACCCGTCAGAGGAGAAGATTGAGGACATGTTTAATGAGATCAAGTTCAGCGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 90 bp ACTGAGAGAAAACCTACAAAAGTAGACCGTAGCGTTCACTTGTTATaGCATAGTGCAGGAATAAGACATCACTGCAAACTTAGCTGTGTC +
Preference number: 1 (lower is better)
Translates to: TERKPTKVDRSVHLL*HSAGIRHHCKLSCV
Trigger: GACACAGCTAAGTTTGCAGTGATGTCTTATTCCTGCACTATGGCATAACAAGTGAACGCTACGGTCTACTTTTGTAGGTTTTCTCTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR GCA 90 bp TTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTaGACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACT +
Preference number: 1 (lower is better)
Translates to: LLNAFIREGTLVPQG*TFGNNFPKSVSSLT
Trigger: AGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
3UTR CAA 90 bp AGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGTaGCTTCTGCATTCTCTTTGGCAGTTGTCACCGGGGTTAGGCATG +
Preference number: 2 (lower is better)
Translates to: RTPWLLGHLQFAGPR*LLHSLWQLSPGLGM
Trigger: CATGCCTAACCCCGGTGACAACTGCCAAAGAGAATGCAGAAGCAACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR GCA 90 bp GTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGAGGGCCACCTGCAGTTTaGGGGACCCAGGTTGCTTCT +
Preference number: 2 (lower is better)
Translates to: VGVGRHTGQSVIETYHWGGPPAV*GTQVAS
Trigger: AGAAGCAACCTGGGTCCCGCAAACTGCAGGTGGCCC...TCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CAA 90 bp GTGATTTCCTCGGGAAGCTCTTTCTGGAGGCAGATTTCTGGACCGTaGATGCAGGTGGCTGCAGGCTCCGATTTCCACCCCTCCGGAGTC +
Preference number: 2 (lower is better)
Translates to: VISSGSSFWRQISGP*MQVAAGSDFHPSGV
Trigger: GACTCCGGAGGGGTGGAAATCGGAGCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTGCCTCCAGAAAGAGCTTCCCGAGGAAATCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CCA 90 bp GTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTGAGGGACCCCGTGGCTTCTaGGCCACCTGCAGTTTGCGG +
Preference number: 2 (lower is better)
Translates to: VIETYHWGHWQERVLRTEGPRGF*ATCSLR
Trigger: CCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCC...CTCAGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR CCA 90 bp ACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGCCCAGCCACCCCGTTTaGGTGGCAAACGATAGCACA +
Preference number: 2 (lower is better)
Translates to: THVQAHTEPFVLPASPMTPSHPV*VANDST
Trigger: TGTGCTATCGTTTGCCACCCAAACGGGGTGGCTGGG...CGTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CAA 90 bp GCCATCCCAGCCACCCCGTTTGGGTGGCAAACGATAGCACATGTTTaGTGGGGGTTGCCGTCAACTGGTAAGATCTGGAGTCCAACCTTG +
Preference number: 2 (lower is better)
Translates to: AIPATPFGWQTIAHV*WGLPSTGKIWSPTL
Trigger: CAAGGTTGGACTCCAGATCTTACCAGTTGACGGCAACCCCCACAAAACATGTGCTATCGTTTGCCACCCAAACGGGGTGGCTGGGATGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR TCA 90 bp ACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGCAGAAAGTGAGGGGGTaGAGCAGCATCTGCCATTTG +
Preference number: 2 (lower is better)
Translates to: THVQAHTEPFVLPASPMTQKVRG*SSICHL
Trigger: CAAATGGCAGATGCTGCTTCACCCCCTCACTTTCTG...CGTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR GCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACATGGCCACACACAACTaGTTGGGTGTTTTGCTGGGA +
Preference number: 2 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHMATHN*LGVLLG
Trigger: TCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCAT...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR CCA 90 bp GACCATAGAACGGGGTCAAGTCTTCACCCCCAAGGGAAACGGCAGCCTCCAGGGATAGCACATGTTTTGTaGGGGTTGCCGTCAACTGGT +
Preference number: 2 (lower is better)
Translates to: DHRTGSSLHPQGKRQPPGIAHVL*GLPSTG
Trigger: ACCAGTTGACGGCAACCCCCACAAAACATGTGCTAT...CCCTGGAGGCTGCCGTTTCCCTTGGGGGTGAAGACTTGACCCCGTTCTATGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CCA 90 bp GCCATCATAGGAAAGGGCCATCCCAGCCACCCCGTTTGGGTGGCAAACGATAGCAAAGGGGACACCTCTTaGAACATGCACACACATGTG +
Preference number: 2 (lower is better)
Translates to: AIIGKGHPSHPVWVANDSKGDTS*NMHTHV
Trigger: CACATGTGTGTGCATGTTCCAAGAGGTGTCCCCTTT...GCTATCGTTTGCCACCCAAACGGGGTGGCTGGGATGGCCCTTTCCTATGATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR GCA 90 bp TTAGGCATGACTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTATGCAGCACAGACTCTaGTGGCTGAGGCTCCTTCAG +
Preference number: 2 (lower is better)
Translates to: LGMTGDACCHGHTQLLGCMQHRL*WLRLLQ
Trigger: CTGAAGGAGCCTCAGCCAGCAGAGTCTGTGCTGCAT...ACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CAA 90 bp CTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTaGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCAGAACA +
Preference number: 2 (lower is better)
Translates to: LVMLAVMATHNCLGV*LGSKIVWHSQEPRT
Trigger: TGTTCTGGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR TCA 90 bp GGGCATGGACAGAAAAGGGGACACCTCTTGGAACATGCACACACATGTGCAAGCAACCGATCGCTCTCATaGCAAAAGGAAGCTCCGACA +
Preference number: 2 (lower is better)
Translates to: GHGQKRGHLLEHAHTCASNRSLS*QKEAPT
Trigger: TGTCGGAGCTTCCTTTTGTCATGAGAGCGATCGGTT...GCTTGCACATGTGTGTGCATGTTCCAAGAGGTGTCCCCTTTTCTGTCCATGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR GCA 90 bp GTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACTCTTTCACAGACAGTaGAATGTCCAACTCTGTGAA +
Preference number: 2 (lower is better)
Translates to: VGVGRHTGQSVIETYHWGLFHRQ*NVQLCE
Trigger: TTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAG...TCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR GCA 90 bp AGGGCCCCTAAGTTAATTTTCCACTGCACCACTGAGCGATCTTGGCCTCCGGCTATGTTTTGTGGGGGTTaGCGTCAACTGGTAAGATCT +
Preference number: 2 (lower is better)
Translates to: RAPKLIFHCTTERSWPPAMFCGG*RQLVRS
Trigger: AGATCTTACCAGTTGACGGCAACCCCCACAAAACAT...AGCCGGAGGCCAAGATCGCTCAGTGGTGCAGTGGAAAATTAACTTAGGGGCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR GCA 90 bp AACTGCTTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCACACCTCTTGGAACATaGACACACATGTGCAAGCAC +
Preference number: 2 (lower is better)
Translates to: NCLGVLLGSKIVWHSQEPTPLGT*THMCKH
Trigger: GTGCTTGCACATGTGTGTGCATGTTCCAAGAGGTGT...GGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAAGCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR TCA 90 bp GATCTGAGAGTAGTAAAAATAGTCCTCCAACTCCCTGTAGAATTTTCCTTCCCTTTTCCACTGCACCACTaGGCGATCTTGGCCTCCGGC +
Preference number: 2 (lower is better)
Translates to: DLRVVKIVLQLPVEFSFPFPLHH*AILASG
Trigger: GCCGGAGGCCAAGATCGCTCAGTGGTGCAGTGGAAA...AGGGAAGGAAAATTCTACAGGGAGTTGGAGGACTATTTTTACTACTCTCAGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR GCA 90 bp ACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGCTCTGTGAATTCCACTaGCTAAGAGAAATTTGCTTT +
Preference number: 2 (lower is better)
Translates to: THVQAHTEPFVLPASPMTLCEFH*LREICF
Trigger: AAAGCAAATTTCTCTTAGGCAGTGGAATTCACAGAG...CGTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR GCA 90 bp GCCGAAAGGTGGCCTATGGTTAAGGTAAACTTTGAGGAAATCCGGGAGGTTGATACTGCAGTTTCTTGCTaGTTCTGTGCACTCTGGCTG +
Preference number: 2 (lower is better)
Translates to: AERWPMVKVNFEEIREVDTAVSC*FCALWL
Trigger: CAGCCAGAGTGCACAGAAGCAGCAAGAAACTGCAGT...ATCAACCTCCCGGATTTCCTCAAAGTTTACCTTAACCATAGGCCACCTTTCGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CAA 90 bp GTCGAGAAACAGTCGATCATCTCTTCTTCTGTCATGTGCTCCCCTTaGGTGAGGAGTAAGTTCAGGAAATCCTCTCTCCGAATGGCCTTT +
Preference number: 2 (lower is better)
Translates to: VEKQSIISSSVMCSP*VRSKFRKSSLRMAF
Trigger: AAAGGCCATTCGGAGAGAGGATTTCCTGAACTTACTCCTCACCAAAGGGGAGCACATGACAGAAGAAGAGATGATCGACTGTTTCTCGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR GCA 90 bp GGAGTCAGGCCAAACAGAGTCGAGAAACAGTCGATCATCTCTTCTTCTGTCATGACACCTCTTGGAACATaGACACACATGTGCAAGCAC +
Preference number: 2 (lower is better)
Translates to: GVRPNRVEKQSIISSSVMTPLGT*THMCKH
Trigger: GTGCTTGCACATGTGTGTGCATGTTCCAAGAGGTGT...CATGACAGAAGAAGAGATGATCGACTGTTTCTCGACTCTGTTTGGCCTGACTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR GCA 90 bp GCCGAAAGGTGGCCTATGGTTAAGGTAAACTTTGAGGAAATCCGGGAGGTTGATTGTACTGCAGTTTCTTaGTGCTTCTGTGCACTCTGG +
Preference number: 2 (lower is better)
Translates to: AERWPMVKVNFEEIREVDCTAVS*CFCALW
Trigger: CCAGAGTGCACAGAAGCAGCAAGAAACTGCAGTACA...ATCAACCTCCCGGATTTCCTCAAAGTTTACCTTAACCATAGGCCACCTTTCGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CAA 90 bp GCAAATATGTTCCGACACCTGCCTGGTCTCCATTGTATCGATACCTaGACTGCGGATCTGAGAGTAGTAAAAATAGTCCTCCAACTCCCT +
Preference number: 2 (lower is better)
Translates to: ANMFRHLPGLHCIDT*TADLRVVKIVLQLP
Trigger: AGGGAGTTGGAGGACTATTTTTACTACTCTCAGATCCGCAGTCAAGGTATCGATACAATGGAGACCAGGCAGGTGTCGGAACATATTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CAA 90 bp GAAGCTCCGACAGGCAAATATGTTCCGACACCTGCCTGGTCTCCATaGTATCGATACCTTGACTGCGGATCTGAGAGTAGTAAAAATAGT +
Preference number: 2 (lower is better)
Translates to: EAPTGKYVPTPAWSP*YRYLDCGSESSKNS
Trigger: ACTATTTTTACTACTCTCAGATCCGCAGTCAAGGTATCGATACAATGGAGACCAGGCAGGTGTCGGAACATATTTGCCTGTCGGAGCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR GCA 90 bp AGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCAGAAGAGGGAGGGCTaGTACCTTGTCCTTGTTAAT +
Preference number: 2 (lower is better)
Translates to: RGAHLETTFPSQSLLLLGQKREG*YLVLVN
Trigger: ATTAACAAGGACAAGGTAGCAGCCCTCCCTCTTCTG...ACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
3UTR-3UTR GCA 90 bp GTGAATATTTCTGCAGTGATTTCCTCGGGAAGCTCTTTCTGGAGGCAGATTTCTATATGTTCCGACACCTaGCTGGTCTCCATTGTATCG +
Preference number: 2 (lower is better)
Translates to: VNISAVISSGSSFWRQISICSDT*LVSIVS
Trigger: CGATACAATGGAGACCAGGCAGGTGTCGGAACATAT...AGAAATCTGCCTCCAGAAAGAGCTTCCCGAGGAAATCACTGCAGAAATATTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR TCA 90 bp GGTAAGATCTGGAGTCCAACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTCTTTACTGCATAGTTaGGCTGCATTTGTCAGGACT +
Preference number: 2 (lower is better)
Translates to: GKIWSPTLSLLMNTKYRFSLLHS*AAFVRT
Trigger: AGTCCTGACAAATGCAGCTCAACTATGCAGTAAAGA...GAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTTGGACTCCAGATCTTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 72 bp GAGCGGCTGGCTATGACGTCCATGCAGCACAGACTCTaGTGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGC +
Preference number: 3 (lower is better)
Translates to: ERLAMTSMQHRL*WLRLLQAWRSS
Trigger: GCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCAGCAGAGTCTGTGCTGCATGGACGTCATAGCCAGCCGCTC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR GCA 72 bp CCTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTaGAGTTTGCGGGACCCAGGTTGCTTCTGCATTCTC +
Preference number: 3 (lower is better)
Translates to: PSGAGPRGFWAT*SLRDPGCFCIL
Trigger: GAGAATGCAGAAGCAACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR CAA 90 bp CTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGCCACACACAACTGCTaGGGTGTTTTGCTGGGAAGT +
Preference number: 3 (lower is better)
Translates to: LQEQDPVASGPPAVCGTQATHNC*GVLLGS
Trigger: ACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGC...CTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR TCA 72 bp TCCACTGCACCACTGAGCGATCTTGGCCTCCGGCTGTaGAGGCAAAGCGGCCATCATAGGAAAGGGCCATCC +
Preference number: 3 (lower is better)
Translates to: STAPLSDLGLRL*RQSGHHRKGPS
Trigger: GGATGGCCCTTTCCTATGATGGCCGCTTTGCCTTCACAGCCGGAGGCCAAGATCGCTCAGTGGTGCAGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 72 bp GGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGTTaGTTCTGCATTCTCTTTGGCAGTTGTCACCGGGGT +
Preference number: 3 (lower is better)
Translates to: GFWATCSLRDPG*FCILFGSCHRG
Trigger: ACCCCGGTGACAACTGCCAAAGAGAATGCAGAAGCAACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR TCA 72 bp CGGGAAGCTCTTTCTGGAGGCAGATTTCTGGACCGTTaGTGCAGGTGGCTGCAGGCTCCGATTTCCACCCCT +
Preference number: 3 (lower is better)
Translates to: REALSGGRFLDR*CRWLQAPISTP
Trigger: AGGGGTGGAAATCGGAGCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTGCCTCCAGAAAGAGCTTCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 72 bp ACGGCAGCCTCCAGGGCCCCTAAGTTAATTTTCCACTaGACCACTGAGCGATCTTGGCCTCCGGCTGTGAAG +
Preference number: 3 (lower is better)
Translates to: TAASRAPKLIFH*TTERSWPPAVK
Trigger: CTTCACAGCCGGAGGCCAAGATCGCTCAGTGGTGCAGTGGAAAATTAACTTAGGGGCCCTGGAGGCTGCCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CAA 90 bp GCCATCATAGGAAAGGGCCATCCCAGCCACCCCGTTTGGGTGGCAAACGATAGCCATGTTTTGTGGGGGTaGCCGTCAACTGGTAAGATC +
Preference number: 3 (lower is better)
Translates to: AIIGKGHPSHPVWVANDSHVLWG*PSTGKI
Trigger: GATCTTACCAGTTGACGGCAACCCCCACAAAACATG...GCTATCGTTTGCCACCCAAACGGGGTGGCTGGGATGGCCCTTTCCTATGATGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CAA 90 bp GGGCATGGACAGAAAAGGGGACACCTCTTGGAACATGCACACACATGTGCAAGCCAGATTTCTGGACCGTaGATGCAGGTGGCTGCAGGC +
Preference number: 3 (lower is better)
Translates to: GHGQKRGHLLEHAHTCASQISGP*MQVAAG
Trigger: GCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTG...GCTTGCACATGTGTGTGCATGTTCCAAGAGGTGTCCCCTTTTCTGTCCATGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 72 bp CTTCCCCTAAAGAAATGTTTCCTTAACGCAGTTGTCTaGGAAGGCCCTGGTGGGGGTGGGCAGGCACACTGG +
Preference number: 3 (lower is better)
Translates to: LPLKKCFLNAVV*EGPGGGGQAHW
Trigger: CCAGTGTGCCTGCCCACCCCCACCAGGGCCTTCTCAGACAACTGCGTTAAGGAAACATTTCTTTAGGGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR TCA 72 bp TCTTTGGCAGTTGTCACCGGGGTTAGGCATGACTGGTaGTGCTTGCTGTCATGGCCACACACAACTGCTTGG +
Preference number: 3 (lower is better)
Translates to: SLAVVTGVRHDW*CLLSWPHTTAW
Trigger: CCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAACCCCGGTGACAACTGCCAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CCA 72 bp CAGTTTGCGGGACCCAGGTTGCTTCTGCATTCTCTTTaGCAGTTGTCACCGGGGTTAGGCATGACTGGTGAT +
Preference number: 3 (lower is better)
Translates to: QFAGPRLLLHSL*QLSPGLGMTGD
Trigger: ATCACCAGTCATGCCTAACCCCGGTGACAACTGCCAAAGAGAATGCAGAAGCAACCTGGGTCCCGCAAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CCA 72 bp GATTTCCTCGGGAAGCTCTTTCTGGAGGCAGATTTCTaGACCGTTGATGCAGGTGGCTGCAGGCTCCGATTT +
Preference number: 3 (lower is better)
Translates to: DFLGKLFLEADF*TVDAGGCRLRF
Trigger: AAATCGGAGCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTGCCTCCAGAAAGAGCTTCCCGAGGAAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CAA 90 bp TGTCCACTGGTTTTGACCACTGTGTGCATTGAAGCCTGGCAGAAAGTGAGGGGGTTTGCGGGACCCAGGTaGCTTCTGCATTCTCTTTGG +
Preference number: 3 (lower is better)
Translates to: CPLVLTTVCIEAWQKVRGFAGPR*LLHSLW
Trigger: CCAAAGAGAATGCAGAAGCAACCTGGGTCCCGCAAA...CCCCCTCACTTTCTGCCAGGCTTCAATGCACACAGTGGTCAAAACCAGTGGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR TCA 72 bp ACTGTGTGCATTGAAGCCTGGCAGAAAGTGAGGGGGTaGAGCAGCATCTGCCATTTGCATCCTTCAGGAGCA +
Preference number: 3 (lower is better)
Translates to: TVCIEAWQKVRG*SSICHLHPSGA
Trigger: TGCTCCTGAAGGATGCAAATGGCAGATGCTGCTTCACCCCCTCACTTTCTGCCAGGCTTCAATGCACACAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR CAA 90 bp CACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGCAGTGCATAGCCATCTaGCAGGGGCAGAAGAGGGAG +
Preference number: 3 (lower is better)
Translates to: HIWKQLSQVSLFSYWVPGQCIAI*QGQKRE
Trigger: CTCCCTCTTCTGCCCCTGCAAGATGGCTATGCACTG...CCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
3UTR-3UTR CAA 90 bp TTAGGCATGACTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTAAAAGGGGACACCTCTaGGAACATGCACACACATGT +
Preference number: 3 (lower is better)
Translates to: LGMTGDACCHGHTQLLGCKRGHL*EHAHTC
Trigger: ACATGTGTGTGCATGTTCCAAGAGGTGTCCCCTTTT...ACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR CAA 90 bp AGTGTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTGACCGTAGCGTTCACTaGTTATGCCATAGTGCAGGA +
Preference number: 3 (lower is better)
Translates to: SVIETYHWGHWQERVLRTDRSVH*LCHSAG
Trigger: TCCTGCACTATGGCATAACAAGTGAACGCTACGGTC...AGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR-3UTR CAA 90 bp ATCCGGGAGGTTGATCTTGTCGATGAGCTTCCCGGTCTCCACGTATTCGCTGAAATCTGGAGTCCAACCTaGTCCTTGTTAATGAACACC +
Preference number: 3 (lower is better)
Translates to: IREVDLVDELPGLHVFAEIWSPT*SLLMNT
Trigger: GGTGTTCATTAACAAGGACAAGGTTGGACTCCAGAT...TTCAGCGAATACGTGGAGACCGGGAAGCTCATCGACAAGATCAACCTCCCGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 72 bp ACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTaGAGCTCTAGCGTGGATTTTACGGGGAGCACCTGC +
Preference number: 3 (lower is better)
Translates to: TLSLLMNTKYRF*SSSVDFTGSTC
Trigger: GCAGGTGCTCCCCGTAAAATCCACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150155.8
ENSMUST00000163092.8
3UTR CCA 72 bp GGACAGAGTGTGATAGAGACGTATCACTGGGGACACTaGCAGGAAAGAGTCCTCAGAACTGAGAGAAAACCT +
Preference number: 3 (lower is better)
Translates to: GQSVIETYHWGH*QERVLRTERKP
Trigger: AGGTTTTCTCTCAGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCACACTCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CCA 72 bp GCTGTTCTGGATGCCGTCCATAGTGTTGCCGAAAGGTaGCCTATGGTTAAGGTAAACTTTGAGGAAATCCGG +
Preference number: 3 (lower is better)
Translates to: AVLDAVHSVAER*PMVKVNFEEIR
Trigger: CCGGATTTCCTCAAAGTTTACCTTAACCATAGGCCACCTTTCGGCAACACTATGGACGGCATCCAGAACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CAA 90 bp GGCAAATATGTTCCGACACCTGCCTGGTCTCCATTGTATCGATACCTTGACTGCATGTACTGCAGTTTCTaGCTGCTTCTGTGCACTCTG +
Preference number: 3 (lower is better)
Translates to: GKYVPTPAWSPLYRYLDCMYCSF*LLLCTL
Trigger: CAGAGTGCACAGAAGCAGCAAGAAACTGCAGTACAT...GCAGTCAAGGTATCGATACAATGGAGACCAGGCAGGTGTCGGAACATATTTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 72 bp TCTTCTCCTCTGACGGGTAAAAACCGATCGCTCTCATaGCAAAAGGAAGCTCCGACAGGCAAATATGTTCCG +
Preference number: 3 (lower is better)
Translates to: SSPLTGKNRSLS*QKEAPTGKYVP
Trigger: CGGAACATATTTGCCTGTCGGAGCTTCCTTTTGTCATGAGAGCGATCGGTTTTTACCCGTCAGAGGAGAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 72 bp CGATCATCTCTTCTTCTGTCATGTGCTCCCCTTTGGTaGGGAGTAAGTTCAGGAAATCCTCTCTCCGAATGG +
Preference number: 3 (lower is better)
Translates to: RSSLLLSCAPLW*GVSSGNPLSEW
Trigger: CCATTCGGAGAGAGGATTTCCTGAACTTACTCCTCACCAAAGGGGAGCACATGACAGAAGAAGAGATGATCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CCA 72 bp AATATTTCTGCAGTGATTTCCTCGGGAAGCTCTTTCTaGAGGCAGATTTCTGGACCGTTGATGCAGGTGGCT +
Preference number: 3 (lower is better)
Translates to: NISAVISSGSSF*RQISGPLMQVA
Trigger: AGCCACCTGCATCAACGGTCCAGAAATCTGCCTCCAGAAAGAGCTTCCCGAGGAAATCACTGCAGAAATATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CAA 90 bp AGCTCCGACAGGCAAATATGTTCCGACACCTGCCTGGTCTCCATTGTATCGATAATAGTTGAGCTGCATTaGTCAGGACTCCATAGAGAG +
Preference number: 3 (lower is better)
Translates to: SSDRQICSDTCLVSIVSIIVELH*SGLHRE
Trigger: CTCTCTATGGAGTCCTGACAAATGCAGCTCAACTAT...TATCGATACAATGGAGACCAGGCAGGTGTCGGAACATATTTGCCTGTCGGAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 72 bp GTCGAGAAACAGTCGATCATCTCTTCTTCTGTCATGTaGTCCCCTTTGGTGAGGAGTAAGTTCAGGAAATCC +
Preference number: 3 (lower is better)
Translates to: VEKQSIISSSVM*SPLVRSKFRKS
Trigger: GGATTTCCTGAACTTACTCCTCACCAAAGGGGAGCACATGACAGAAGAAGAGATGATCGACTGTTTCTCGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CCA 72 bp CATGTTTTGTGGGGGTTGCCGTCAACTGGTAAGATCTaGAGTCCAACCTTGTCCTTGTTAATGAACACCAAG +
Preference number: 3 (lower is better)
Translates to: HVLWGLPSTGKI*SPTLSLLMNTK
Trigger: CTTGGTGTTCATTAACAAGGACAAGGTTGGACTCCAGATCTTACCAGTTGACGGCAACCCCCACAAAACATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR-3UTR CAA 90 bp AGCTCCGACAGGCAAATATGTTCCGACACCTGCCTGGTCTCCATTGTATCGATAAGTCCAACCTTGTCCTaGTTAATGAACACCAAGTAT +
Preference number: 3 (lower is better)
Translates to: SSDRQICSDTCLVSIVSISPTLS*LMNTKY
Trigger: ATACTTGGTGTTCATTAACAAGGACAAGGTTGGACT...TATCGATACAATGGAGACCAGGCAGGTGTCGGAACATATTTGCCTGTCGGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 72 bp GCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTaGACATTTGGAAACAACTTTCCCAAGTCAGTCTCT +
Preference number: 3 (lower is better)
Translates to: AFIREGTLVPQG*TFGNNFPKSVS
Trigger: AGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
3UTR-3UTR CAA 90 bp GATCTGAGAGTAGTAAAAATAGTCCTCCAACTCCCTGTAGAATTTTCCTTCCCTAAAAGGGGACACCTCTaGGAACATGCACACACATGT +
Preference number: 3 (lower is better)
Translates to: DLRVVKIVLQLPVEFSFPKRGHL*EHAHTC
Trigger: ACATGTGTGTGCATGTTCCAAGAGGTGTCCCCTTTT...AGGGAAGGAAAATTCTACAGGGAGTTGGAGGACTATTTTTACTACTCTCAGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR TCA 72 bp CTTGATCTCATTAAACATGTCCTCAATCTTCTCCTCTaGCGGGTAAAAACCGATCGCTCTCATGACAAAAGG +
Preference number: 3 (lower is better)
Translates to: LDLIKHVLNLLL*RVKTDRSHDKR
Trigger: CCTTTTGTCATGAGAGCGATCGGTTTTTACCCGTCAGAGGAGAAGATTGAGGACATGTTTAATGAGATCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR GCA 72 bp AAACCTACAAAAGTAGACCGTAGCGTTCACTTGTTATaGCATAGTGCAGGAATAAGACATCACTGCAAACTT +
Preference number: 3 (lower is better)
Translates to: KPTKVDRSVHLL*HSAGIRHHCKL
Trigger: AAGTTTGCAGTGATGTCTTATTCCTGCACTATGGCATAACAAGTGAACGCTACGGTCTACTTTTGTAGGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGGGGTGGCCCTGCAGATaGTACTGGGTGTTCCTGACG +
Preference number: 4 (lower is better)
Translates to: FRSRTPWLLGHLQFAGPRGWPCR*YWVFLT
Trigger: CGTCAGGAACACCCAGTACCATCTGCAGGGCCACCC...CCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGCTGTCAGGCCTGTTCTCGCTTCAGCCAGGGAGGAGCTTaGCCTGGGTGGCTCATGGCT +
Preference number: 4 (lower is better)
Translates to: WLRLLQAWRSSCQACSRFSQGGA*PGWLMA
Trigger: AGCCATGAGCCACCCAGGTCAAGCTCCTCCCTGGCT...GAAGCGAGAACAGGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGTGTAATTGGAGTCGTGTaGGAAGCAGCAGTGGGACAC +
Preference number: 4 (lower is better)
Translates to: SGAGPRGFWATCSLRDPGVIGVV*EAAVGH
Trigger: GTGTCCCACTGCTGCTTCTCACACGACTCCAATTAC...ACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGCTGTCAGGCCTGTTCTCGCTTCGGAAGAGTTCCTTGGTaGGCGGCGGGTACCAGATCA +
Preference number: 4 (lower is better)
Translates to: WLRLLQAWRSSCQACSRFGRVPW*AAGTRS
Trigger: TGATCTGGTACCCGCCGCTCACCAAGGAACTCTTCC...GAAGCGAGAACAGGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp TTGTCTGAGAAGGCCCTGGTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGCAGCCTGGGCTCATTaGTGTCCAGGTGGACGCCGA +
Preference number: 4 (lower is better)
Translates to: LSEKALVGVGRHTGQSVIAAWAH*CPGGRR
Trigger: TCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGC...TATCACACTCTGTCCAGTGTGCCTGCCCACCCCCACCAGGGCCTTCTCAGACAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp GTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGAGGAGACAGACACCAGTaGCTCCTCCGCACTCAGTCC +
Preference number: 4 (lower is better)
Translates to: VGVGRHTGQSVIETYHWGGDRHQ*LLRTQS
Trigger: GGACTGAGTGCGGAGGAGTCACTGGTGTCTGTCTCC...TCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp TTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGGTGAGAGCGAAGTCTTaGCAAATACTCCCAGACCCT +
Preference number: 4 (lower is better)
Translates to: FRSRTPWLLGHLQFAGPRVRAKS*QILPDP
Trigger: AGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCAC...CCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACAAGGGAAGGCCGAGATaGCGGAGGAGGAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHKGRPR*RRRRWK
Trigger: CTTCCACCTCCTCCTCCGCCATCTCGGCCTTCCCTT...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp CTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGTTCCAGGGAGAGTCTTaGTTCATCTTTTCCTTGGGC +
Preference number: 4 (lower is better)
Translates to: LQEQDPVASGPPAVCGTQFQGES*FIFSLG
Trigger: GCCCAAGGAAAAGATGAAGCAAGACTCTCCCTGGAA...CTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp GCGGCTGGCTATGACGTCCATGCAGCACAGACTCTGCTGGCTGAGGCTCCTTCAAAGCTCAAGTGTGCATaGGGGCGTCTCCACTGCCAA +
Preference number: 4 (lower is better)
Translates to: AAGYDVHAAQTLLAEAPSKLKCA*GRLHCQ
Trigger: TTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTT...TGAAGGAGCCTCAGCCAGCAGAGTCTGTGCTGCATGGACGTCATAGCCAGCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp TTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGAGATGGCCTGAGTCTTaGTGTTGCTCACCAACTCTT +
Preference number: 4 (lower is better)
Translates to: FRSRTPWLLGHLQFAGPRRWPES*CCSPTL
Trigger: AAGAGTTGGTGAGCAACAGCAAGACTCAGGCCATCT...CCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGCTGTCAGGCCTGTTCTCGCTTCTCGGGAAGCTCTTTCTaGAGGCAGATTTCTGGACCG +
Preference number: 4 (lower is better)
Translates to: WLRLLQAWRSSCQACSRFSGSSF*RQISGP
Trigger: CGGTCCAGAAATCTGCCTCCAGAAAGAGCTTCCCGA...GAAGCGAGAACAGGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TTTGCATCCTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGCACAGGTGTAAAGGATaGCTCTCCTGTCTTCCCGCA +
Preference number: 4 (lower is better)
Translates to: FASFRSRTPWLLGHLQFAHRCKG*LSCLPA
Trigger: TGCGGGAAGACAGGAGAGTCATCCTTTACACCTGTG...CGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGGATGCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp CACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACCGAAGTCCCACACCTTaGTCATCCCGCAGACACTCC +
Preference number: 4 (lower is better)
Translates to: HTCASTHGALCAASIANDRSPTP*SSRRHS
Trigger: GGAGTGTCTGCGGGATGATCAAGGTGTGGGACTTCG...GTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TGCTCTTTAGACCCAGTGCATAGCCATCTTGCAGGGGCAGAAGAGGGAGGGCTGAAACTGTCCCCTCGGTaGATCCAGCTCCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: CSLDPVHSHLAGAEEGGLKLSPR*IQLQAG
Trigger: CCCTGCTTGGAGCTGGATTCACCGAGGGGACAGTTT...CAGCCCTCCCTCTTCTGCCCCTGCAAGATGGCTATGCACTGGGTCTAAAGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACTGCGGGCGTCTCCACTaGCAAAGTCCACTTCCAGAT +
Preference number: 4 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHCGRLH*QSPLPD
Trigger: ATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCA...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACGATGAGGGGTTGGTATaGGTGGCAGGAGACGGCATA +
Preference number: 4 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHDEGLV*VAGDGI
Trigger: TATGCCGTCTCCTGCCACCCATACCAACCCCTCATC...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CAA 72 bp TCGGGAAGCTCTTTCTGGAGGCAGATTTCTGGACCGTaGATGCAGGTGGCTGCAGGCTCCGATTTCCACCCC +
Preference number: 4 (lower is better)
Translates to: SGSSFWRQISGP*MQVAAGSDFHP
Trigger: GGGGTGGAAATCGGAGCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTGCCTCCAGAAAGAGCTTCCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
CDS-3UTR CCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACTGGCGGAGGAGGAGGTaGAAGATGGGTAGTGTATGT +
Preference number: 4 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHWRRRR*KMGSVC
Trigger: ACATACACTACCCATCTTCCACCTCCTCCTCCGCCA...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CAA 72 bp GCGGGACCCAGGTTGCTTCTGCATTCTCTTTGGCAGTaGTCACCGGGGTTAGGCATGACTGGTGATGCTTGC +
Preference number: 4 (lower is better)
Translates to: AGPRLLLHSLWQ*SPGLGMTGDAC
Trigger: GCAAGCATCACCAGTCATGCCTAACCCCGGTGACAACTGCCAAAGAGAATGCAGAAGCAACCTGGGTCCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACAACCGATCGCTCTCATaGCAAAAGGAAGCTCCGACA +
Preference number: 4 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHNRSLS*QKEAPT
Trigger: TGTCGGAGCTTCCTTTTGTCATGAGAGCGATCGGTT...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TTGTCTGAGAAGGCCCTGGTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATACTGGGTTGCAGAATCTaGGATGGTGGCCAGAAACTT +
Preference number: 4 (lower is better)
Translates to: LSEKALVGVGRHTGQSVILGCRI*DGGQKL
Trigger: AAGTTTCTGGCCACCATCTCAGATTCTGCAACCCAG...TATCACACTCTGTCCAGTGTGCCTGCCCACCCCCACCAGGGCCTTCTCAGACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGTTGTGGTAACTTCAAGTaGAAGACAGACTGGCTAAAT +
Preference number: 4 (lower is better)
Translates to: SGAGPRGFWATCSLRDPGCGNFK*KTDWLN
Trigger: ATTTAGCCAGTCTGTCTTTCACTTGAAGTTACCACA...ACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TGTCCACTGGTTTTGACCACTGTGTGCATTGAAGCCTGGCAGAAAGTGAGGGGGAAACTGTCCCCTCGGTaGATCCAGCTCCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: CPLVLTTVCIEAWQKVRGKLSPR*IQLQAG
Trigger: CCCTGCTTGGAGCTGGATTCACCGAGGGGACAGTTT...CCCCCTCACTTTCTGCCAGGCTTCAATGCACACAGTGGTCAAAACCAGTGGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TTTGCATCCTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGTGGATGCTGTTTTGGTaGGAGCGAAGTCTTGCCAAA +
Preference number: 4 (lower is better)
Translates to: FASFRSRTPWLLGHLQFAWMLFW*ERSLAK
Trigger: TTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCA...CGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGGATGCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TCTGCCATTTGCATCCTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCATCTTCGTGGTGGCATTaGAGAGCTTCACTTTGTAGC +
Preference number: 4 (lower is better)
Translates to: SAICILQEQDPVASGPPASSWWH*RASLCS
Trigger: GCTACAAAGTGAAGCTCTTCAATGCCACCACGAAGA...TGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGGATGCAAATGGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp GAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCGCAGCCTGGGCTCATTaGTGTCCAGGTGGACGCCGA +
Preference number: 4 (lower is better)
Translates to: EGCYLVLVNEHQVSLLQLAAWAH*CPGGRR
Trigger: TCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGC...GAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACATGTCTTCAGGCTTCTaGCTGGCTTCCTCGGTATCA +
Preference number: 4 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHMSSGF*LASSVS
Trigger: TGATACCGAGGAAGCCAGCCAGAAGCCTGAAGACAT...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GCGGCTGGCTATGACGTCCATGCAGCACAGACTCTGCTGGCTGAGGCTCCTTCAGCCTCCTTCTGTAAATaGACCAGTTTACGAGGCTTG +
Preference number: 4 (lower is better)
Translates to: AAGYDVHAAQTLLAEAPSASFCK*TSLRGL
Trigger: CAAGCCTCGTAAACTGGTCCATTTACAGAAGGAGGC...TGAAGGAGCCTCAGCCAGCAGAGTCTGTGCTGCATGGACGTCATAGCCAGCCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp AGTGTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTCTTGGCCTCCGGCTGTaGAGGCAAAGCGGCCATCAT +
Preference number: 4 (lower is better)
Translates to: SVIETYHWGHWQERVLRTLGLRL*RQSGHH
Trigger: ATGATGGCCGCTTTGCCTTCACAGCCGGAGGCCAAG...AGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp GGGCATGGACAGAAAAGGGGACACCTCTTGGAACATGCACACACATGTGCAAGCAGATTTCTGGACCGTTaGTGCAGGTGGCTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: GHGQKRGHLLEHAHTCASRFLDR*CRWLQA
Trigger: AGCCTGCAGCCACCTGCATCAACGGTCCAGAAATCT...GCTTGCACATGTGTGTGCATGTTCCAAGAGGTGTCCCCTTTTCTGTCCATGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGAATAGCACATGTTTTGTaGGGGTTGCCGTCAACTGGT +
Preference number: 4 (lower is better)
Translates to: VGVGRHTGQSVIETYHWGIAHVL*GLPSTG
Trigger: ACCAGTTGACGGCAACCCCCACAAAACATGTGCTAT...TCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGCTGTCAGGCCTGTTCTCGCTTCCATGCCATTACCTTCTaGACAGCTGTCAAATATGGT +
Preference number: 4 (lower is better)
Translates to: WLRLLQAWRSSCQACSRFHAITF*TAVKYG
Trigger: ACCATATTTGACAGCTGTCCAGAAGGTAATGGCATG...GAAGCGAGAACAGGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGTTCTGACAAGGGAAGGCCGAGATaGCGGAGGAGGAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: GNNFPKSVSSLTGSQGSDKGRPR*RRRRWK
Trigger: CTTCCACCTCCTCCTCCGCCATCTCGGCCTTCCCTT...GTCAGAACCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp TTGCAGGGGCAGAAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAACTGCGATGAGGGGTTaGTATGGGTGGCAGGAGACG +
Preference number: 4 (lower is better)
Translates to: LQGQKREGCYLVLVNEHQTAMRG*YGWQET
Trigger: CGTCTCCTGCCACCCATACCAACCCCTCATCGCAGT...TTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTTCTGCCCCTGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp TGCTCTTTAGACCCAGTGCATAGCCATCTTGCAGGGGCAGAAGAGGGAGGGCTGTGTGAGAAGCAGCAGTaGGACACGCTGCTTTTGGAA +
Preference number: 4 (lower is better)
Translates to: CSLDPVHSHLAGAEEGGLCEKQQ*DTLLLE
Trigger: TTCCAAAAGCAGCGTGTCCCACTGCTGCTTCTCACA...CAGCCCTCCCTCTTCTGCCCCTGCAAGATGGCTATGCACTGGGTCTAAAGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp TTAGGCATGACTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTCAAGGCTCAGCAGCCTaGGCTCATTGCTGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LGMTGDACCHGHTQLLGCQGSAA*AHCCPG
Trigger: ACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTG...ACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CAA 72 bp GCCACCCCGTTTGGGTGGCAAACGATAGCACATGTTTaGTGGGGGTTGCCGTCAACTGGTAAGATCTGGAGT +
Preference number: 4 (lower is better)
Translates to: ATPFGWQTIAHV*WGLPSTGKIWS
Trigger: ACTCCAGATCTTACCAGTTGACGGCAACCCCCACAAAACATGTGCTATCGTTTGCCACCCAAACGGGGTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
CDS-3UTR TCA 90 bp TTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCAGAACACCCTCTCCATCCTCCTaGGACTCCTCCCATGACAGT +
Preference number: 4 (lower is better)
Translates to: LGVLLGSKIVWHSQEPRTPSPSS*DSSHDS
Trigger: ACTGTCATGGGAGGAGTCTCAGGAGGATGGAGAGGG...TGTTCTGGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp TTAGGCATGACTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTAGTTGCTGTACCAGTTaGCCACGGAGAGGGTGTGGT +
Preference number: 4 (lower is better)
Translates to: LGMTGDACCHGHTQLLGCSCCTS*PRRGCG
Trigger: ACCACACCCTCTCCGTGGTCAACTGGTACAGCAACT...ACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp TTGTCTGAGAAGGCCCTGGTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAAAGTCCACTTCCAGATaGAAACTTTCTGGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: LSEKALVGVGRHTGQSVIKSTSR*KLSGLQ
Trigger: CTGCAACCCAGAAAGTTTGCATCTGGAAGTGGACTT...TATCACACTCTGTCCAGTGTGCCTGCCCACCCCCACCAGGGCCTTCTCAGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TTGTCTGAGAAGGCCCTGGTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAAGTGTTGCCGAAAGGTaGCCTATGGTTAAGGTAAAC +
Preference number: 4 (lower is better)
Translates to: LSEKALVGVGRHTGQSVISVAER*PMVKVN
Trigger: GTTTACCTTAACCATAGGCCACCTTTCGGCAACACT...TATCACACTCTGTCCAGTGTGCCTGCCCACCCCCACCAGGGCCTTCTCAGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACCCGCACTCAGTCCTTTaGACTGGAATAATTTTCGTC +
Preference number: 4 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHPHSVL*TGIIFV
Trigger: GACGAAAATTATTCCAGTCCAAAGGACTGAGTGCGG...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TGTCCACTGGTTTTGACCACTGTGTGCATTGAAGCCTGGCAGAAAGTGAGGGGGGACAGCTGTCAAATATaGTGTGCACGGGGATTCCCG +
Preference number: 4 (lower is better)
Translates to: CPLVLTTVCIEAWQKVRGDSCQI*CARGFP
Trigger: CGGGAATCCCCGTGCACACCATATTTGACAGCTGTC...CCCCCTCACTTTCTGCCAGGCTTCAATGCACACAGTGGTCAAAACCAGTGGACA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TGCTCTTTAGACCCAGTGCATAGCCATCTTGCAGGGGCAGAAGAGGGAGGGCTGGCCTCCTTCTGTAAATaGACCAGTTTACGAGGCTTG +
Preference number: 4 (lower is better)
Translates to: CSLDPVHSHLAGAEEGGLASFCK*TSLRGL
Trigger: CAAGCCTCGTAAACTGGTCCATTTACAGAAGGAGGC...CAGCCCTCCCTCTTCTGCCCCTGCAAGATGGCTATGCACTGGGTCTAAAGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp GTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTTGCTGGGAAGTTCATTGCTGTCCAGGTaGACGCCGAACAGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: VMLAVMATHNCLGVLLGSSLLSR*TPNRRL
Trigger: AAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGA...ACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp CTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTTGCTGGGAAGTAAAATATTTCCACTGCACCACTaGGCGATCTTGGCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: LAVMATHNCLGVLLGSKIFPLHH*AILASG
Trigger: GCCGGAGGCCAAGATCGCTCAGTGGTGCAGTGGAAA...TATTTTACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp GAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCAGTTGCTGTACCAGTTaGCCACGGAGAGGGTGTGGT +
Preference number: 4 (lower is better)
Translates to: EGCYLVLVNEHQVSLLQLSCCTS*PRRGCG
Trigger: ACCACACCCTCTCCGTGGTCAACTGGTACAGCAACT...GAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp GCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTAGCGTGCGAAGTCCCACACCTTaGTCATCCCGCAGACACTCC +
Preference number: 4 (lower is better)
Translates to: ATLSLLMNTKYRFCSSSVRSPTP*SSRRHS
Trigger: GGAGTGTCTGCGGGATGATCAAGGTGTGGGACTTCG...CACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp GAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCAGCCGCTGTTGCAGATaGGCAGGAAGAGTTCCTTGG +
Preference number: 4 (lower is better)
Translates to: EGCYLVLVNEHQVSLLQLSRCCR*AGRVPW
Trigger: CCAAGGAACTCTTCCTGCTCATCTGCAACAGCGGCT...GAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp ACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGCGTGGTGAATATTTCTaGAGTGATTTCCTCGGGAAG +
Preference number: 4 (lower is better)
Translates to: THVQAHTEPFVLPASPMTRGEYF*SDFLGK
Trigger: CTTCCCGAGGAAATCACTGCAGAAATATTCACCACG...CGTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACTCAACTGGTAAGATCTaGAGTCCAACCTTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: HTCASTHGALCAASIANDSTGKI*SPTLSL
Trigger: CAAGGACAAGGTTGGACTCCAGATCTTACCAGTTGA...GTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGAGCTTCATCTTTTCCTTaGGCTAAAATGTCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: VGVGRHTGQSVIETYHWGASSFP*AKMSSG
Trigger: GCCTGAAGACATTTTAGCCCAAGGAAAAGATGAAGC...TCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACCCCTGCAGATGGTACTaGGTGTTCCTGACGACGTCG +
Preference number: 4 (lower is better)
Translates to: PPTLLFHRQCNVQLCEFHPCRWY*VFLTTS
Trigger: CGACGTCGTCAGGAACACCCAGTACCATCTGCAGGG...GTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR TCA 90 bp CGCTTCCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATAGCCGCTGTTGCAGATaGGCAGGAAGAGTTCCTTGG +
Preference number: 4 (lower is better)
Translates to: RFRLLFSFTDSAMSNSVNSRCCR*AGRVPW
Trigger: CCAAGGAACTCTTCCTGCTCATCTGCAACAGCGGCT...ATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGGAAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp CGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTGTTGATGCAGGTGGCTaGAGGCTCCGATTTCCACCC +
Preference number: 4 (lower is better)
Translates to: RLLFSFTDSAMSNSVNSTVDAGG*RLRFPP
Trigger: GGGTGGAAATCGGAGCCTGCAGCCACCTGCATCAAC...AGTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp CAGAAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTTGCGGGCGTCTCCACTaGCAAAGTCCACTTCCAGAT +
Preference number: 4 (lower is better)
Translates to: QKREGCYLVLVNEHQVSLCGRLH*QSPLPD
Trigger: ATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCA...AAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp TGTCCACTGGTTTTGACCACTGTGTGCATTGAAGCCTGGCAGAAAGTGAGGGGGACAGGAGGCTTTGGATaGTGTTTTGGTGAGAGCGAA +
Preference number: 4 (lower is better)
Translates to: CPLVLTTVCIEAWQKVRGTGGFG*CFGESE
Trigger: TTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGT...CCCCCTCACTTTCTGCCAGGCTTCAATGCACACAGTGGTCAAAACCAGTGGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCAGAACAGCCACCCCGTTTGGGTaGCAAACGATAGCACATGTT +
Preference number: 4 (lower is better)
Translates to: LGVLLGSKIVWHSQEPRTATPFG*QTIAHV
Trigger: AACATGTGCTATCGTTTGCCACCCAAACGGGGTGGC...TGTTCTGGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTCCCAGCCACCCCGTTTaGGTGGCAAACGATAGCACA +
Preference number: 4 (lower is better)
Translates to: RLLFSFTDSAMSNSVNSTPSHPV*VANDST
Trigger: TGTGCTATCGTTTGCCACCCAAACGGGGTGGCTGGG...AGTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp AACTGCTTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCGACCTGGGTGGCTCATaGCTGATGACAATATTGTCC +
Preference number: 4 (lower is better)
Translates to: NCLGVLLGSKIVWHSQEPDLGGS*LMTILS
Trigger: GGACAATATTGTCATCAGCCATGAGCCACCCAGGTC...GGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAAGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TGTCCACTGGTTTTGACCACTGTGTGCATTGAAGCCTGGCAGAAAGTGAGGGGGATAAGGTGTCCTCTGTaGAGACAGACACCAGTGACT +
Preference number: 4 (lower is better)
Translates to: CPLVLTTVCIEAWQKVRGIRCPL*RQTPVT
Trigger: AGTCACTGGTGTCTGTCTCCACAGAGGACACCTTAT...CCCCCTCACTTTCTGCCAGGCTTCAATGCACACAGTGGTCAAAACCAGTGGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TTAGGCATGACTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTAATTATGAGGCAGTCTaGTCCTTCGTCTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: LGMTGDACCHGHTQLLGCNYEAV*SFVCCG
Trigger: GCCACAGCAGACGAAGGACCAGACTGCCTCATAATT...ACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTTGCTGGGAAGTAAAATAACTGCGATGAGGGGTTaGTATGGGTGGCAGGAGACG +
Preference number: 4 (lower is better)
Translates to: LAVMATHNCLGVLLGSKITAMRG*YGWQET
Trigger: CGTCTCCTGCCACCCATACCAACCCCTCATCGCAGT...TATTTTACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp AAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGTCATTGCTGTCCAGGTaGACGCCGAACAGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: KREGCYLVLVNEHQVSLLSLLSR*TPNRRL
Trigger: AAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGA...CAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp CATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGTTGCAGGAAGAGTTCCTTaGAGCGGCGGGTACCAGATC +
Preference number: 4 (lower is better)
Translates to: HLETTFPSQSLLLLGPRVAGRVP*SGGYQI
Trigger: GATCTGGTACCCGCCGCTCCAAGGAACTCTTCCTGC...AACCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp GCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTAGCGTGGTAATTGGAGTCGTGTaGGAAGCAGCAGTGGGACAC +
Preference number: 4 (lower is better)
Translates to: ATLSLLMNTKYRFCSSSVVIGVV*EAAVGH
Trigger: GTGTCCCACTGCTGCTTCTCACACGACTCCAATTAC...CACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp GTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTTGCTGGGAAGTAGAATTTTCCTTCCCTaGCACCAGACACCAGACCAT +
Preference number: 4 (lower is better)
Translates to: VMLAVMATHNCLGVLLGSRIFLP*HQTPDH
Trigger: ATGGTCTGGTGTCTGGTGGCAGGGAAGGAAAATTCT...ACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp AGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTAAGCTCAAGTGTGCATaGGGGCGTCTCCACTGCCAA +
Preference number: 4 (lower is better)
Translates to: RGAHLETTFPSQSLLLLGKLKCA*GRLHCQ
Trigger: TTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTT...ACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp GAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCCAAGGAGCGTCTTTCTaGACATCTTCGTGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: EGCYLVLVNEHQVSLLQLQGASF*TSSWWH
Trigger: ATGCCACCACGAAGATGTGCAGAAAGACGCTCCTTG...GAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp AACTGCTTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCCAGAATCTGAGATGGTaGCCAGAAACTTGGAGTCAC +
Preference number: 4 (lower is better)
Translates to: NCLGVLLGSKIVWHSQEPQNLRW*PETWSH
Trigger: GTGACTCCAAGTTTCTGGCCACCATCTCAGATTCTG...GGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAAGCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTTAGAGTGCAGTCTGTaGGGAGGTTGGACTTCTCGG +
Preference number: 4 (lower is better)
Translates to: PPTLLFHRQCNVQLCEFHLECSL*GGWTSR
Trigger: CCGAGAAGTCCAACCTCCCCACAGACTGCACTCTAA...GTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CAA 72 bp TTTGGGTGGCAAACGATAGCACATGTTTTGTGGGGGTaGCCGTCAACTGGTAAGATCTGGAGTCCAACCTTG +
Preference number: 4 (lower is better)
Translates to: FGWQTIAHVLWG*PSTGKIWSPTL
Trigger: CAAGGTTGGACTCCAGATCTTACCAGTTGACGGCAACCCCCACAAAACATGTGCTATCGTTTGCCACCCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
CDS-3UTR TCA 90 bp GCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTAGCGTGCTGGGTTGCAGAATCTaGGATGGTGGCCAGAAACTT +
Preference number: 4 (lower is better)
Translates to: ATLSLLMNTKYRFCSSSVLGCRI*DGGQKL
Trigger: AAGTTTCTGGCCACCATCTCAGATTCTGCAACCCAG...CACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp TTAGGCATGACTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTGCTTTTGGAATATTTaGAGGGCTCCGGGCTTTCAT +
Preference number: 4 (lower is better)
Translates to: LGMTGDACCHGHTQLLGCCFWNI*RAPGFH
Trigger: ATGAAAGCCCGGAGCCCTTCAAATATTCCAAAAGCA...ACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp GAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCAGATGGCCTGAGTCTTaGTGTTGCTCACCAACTCTT +
Preference number: 4 (lower is better)
Translates to: EGCYLVLVNEHQVSLLQLRWPES*CCSPTL
Trigger: AAGAGTTGGTGAGCAACAGCAAGACTCAGGCCATCT...GAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp GTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTGAGCTTTCTTTTCCTCCTTaGCTCGTCCAGCTTTTGTCT +
Preference number: 4 (lower is better)
Translates to: VIETYHWGHWQERVLRTELSFPP*LVQLLS
Trigger: AGACAAAAGCTGGACGAGCCAAGGAGGAAAAGAAAG...CTCAGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGTTCTGACCAGAATCTGAGATGGTaGCCAGAAACTTGGAGTCAC +
Preference number: 4 (lower is better)
Translates to: GNNFPKSVSSLTGSQGSDQNLRW*PETWSH
Trigger: GTGACTCCAAGTTTCTGGCCACCATCTCAGATTCTG...GTCAGAACCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp CATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGTTTGGCGGAGGAGGAGGTaGAAGATGGGTAGTGTATGT +
Preference number: 4 (lower is better)
Translates to: HLETTFPSQSLLLLGPRVWRRRR*KMGSVC
Trigger: ACATACACTACCCATCTTCCACCTCCTCCTCCGCCA...AACCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp CGCTTCCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTGTGAGAAGCAGCAGTaGGACACGCTGCTTTTGGAA +
Preference number: 4 (lower is better)
Translates to: RFRLLFSFTDSAMSNSVNCEKQQ*DTLLLE
Trigger: TTCCAAAAGCAGCGTGTCCCACTGCTGCTTCTCACA...ATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGGAAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
3UTR CAA 72 bp ACAGGCAAATATGTTCCGACACCTGCCTGGTCTCCATaGTATCGATACCTTGACTGCGGATCTGAGAGTAGT +
Preference number: 4 (lower is better)
Translates to: TGKYVPTPAWSP*YRYLDCGSESS
Trigger: ACTACTCTCAGATCCGCAGTCAAGGTATCGATACAATGGAGACCAGGCAGGTGTCGGAACATATTTGCCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
3UTR CAA 72 bp CAGTCGATCATCTCTTCTTCTGTCATGTGCTCCCCTTaGGTGAGGAGTAAGTTCAGGAAATCCTCTCTCCGA +
Preference number: 4 (lower is better)
Translates to: QSIISSSVMCSP*VRSKFRKSSLR
Trigger: TCGGAGAGAGGATTTCCTGAACTTACTCCTCACCAAAGGGGAGCACATGACAGAAGAAGAGATGATCGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
CDS-3UTR TCA 90 bp GAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTGCTTTTGGAATATTTaGAGGGCTCCGGGCTTTCAT +
Preference number: 4 (lower is better)
Translates to: EGCYLVLVNEHQVSLLQLCFWNI*RAPGFH
Trigger: ATGAAAGCCCGGAGCCCTTCAAATATTCCAAAAGCA...GAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp CAGAAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTTGGATGCTGTTTTGGTaGGAGCGAAGTCTTGCCAAA +
Preference number: 4 (lower is better)
Translates to: QKREGCYLVLVNEHQVSLWMLFW*ERSLAK
Trigger: TTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCA...AAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp AAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGTCTTCGTGGTGGCATTaGAGAGCTTCACTTTGTAGC +
Preference number: 4 (lower is better)
Translates to: KREGCYLVLVNEHQVSLLSSWWH*RASLCS
Trigger: GCTACAAAGTGAAGCTCTTCAATGCCACCACGAAGA...CAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp AGTGTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTATGTTTTGTGGGGGTTaGCGTCAACTGGTAAGATCT +
Preference number: 4 (lower is better)
Translates to: SVIETYHWGHWQERVLRTMFCGG*RQLVRS
Trigger: AGATCTTACCAGTTGACGGCAACCCCCACAAAACAT...AGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCACACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp CCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACATATGTTCCGACACCTaGCTGGTCTCCATTGTATCG +
Preference number: 4 (lower is better)
Translates to: PPTLLFHRQCNVQLCEFHICSDT*LVSIVS
Trigger: CGATACAATGGAGACCAGGCAGGTGTCGGAACATAT...GTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp AAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGACAGGAGGCTTTGGATaGTGTTTTGGTGAGAGCGAA +
Preference number: 4 (lower is better)
Translates to: KREGCYLVLVNEHQVSLLTGGFG*CFGESE
Trigger: TTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGT...CAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp CTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTTGCTGGGAAGTAAAATACAAGGAGCGTCTTTCTaGACATCTTCGTGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: LAVMATHNCLGVLLGSKIQGASF*TSSWWH
Trigger: ATGCCACCACGAAGATGTGCAGAAAGACGCTCCTTG...TATTTTACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp TTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCAGAACAGAAAACCATACTCCTTaGGAAGCTCAAGTGTGCATG +
Preference number: 4 (lower is better)
Translates to: LGVLLGSKIVWHSQEPRTENHTP*EAQVCM
Trigger: CATGCACACTTGAGCTTCCCAAGGAGTATGGTTTTC...TGTTCTGGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GTTCTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCCAAGGCTCAGCAGCCTaGGCTCATTGCTGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: VLLLNAFIREGTLVPQGCQGSAA*AHCCPG
Trigger: ACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTG...GCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp AACTGCTTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCGCTTGGTATGGTTTTTaGAAAGGACAGAGTCCTTAT +
Preference number: 4 (lower is better)
Translates to: NCLGVLLGSKIVWHSQEPAWYGF*KGQSPY
Trigger: ATAAGGACTCTGTCCTTTTCAAAAACCATACCAAGC...GGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAAGCAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR GCA 90 bp TTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCAGAACATCAGTTAGGCTCTGCTaGAGAGCATCTTCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: LGVLLGSKIVWHSQEPRTSVRLC*RASSSK
Trigger: TTTTGAAGAAGATGCTCTGCAGCAGAGCCTAACTGA...TGTTCTGGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp GGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCTTGCAGAATCTGAGATaGTGGCCAGAAACTTGGAGT +
Preference number: 4 (lower is better)
Translates to: GCTFGNNFPKSVSSLTGSLQNLR*WPETWS
Trigger: ACTCCAAGTTTCTGGCCACCATCTCAGATTCTGCAA...GGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp AAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGGAAAACCATACTCCTTaGGAAGCTCAAGTGTGCATG +
Preference number: 4 (lower is better)
Translates to: KREGCYLVLVNEHQVSLLENHTP*EAQVCM
Trigger: CATGCACACTTGAGCTTCCCAAGGAGTATGGTTTTC...CAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp GGGACATTAGTGCCACAGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTTGGCAGGCTTGGTATaGTTTTTGAAAAGGACAGAG +
Preference number: 4 (lower is better)
Translates to: GTLVPQGCTFGNNFPKSVLAGLV*FLKRTE
Trigger: CTCTGTCCTTTTCAAAAACCATACCAAGCCTGCCAA...GACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGTGGCACTAATGTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp GTTCTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCGATGAGGGGTTGGTATaGGTGGCAGGAGACGGCATA +
Preference number: 4 (lower is better)
Translates to: VLLLNAFIREGTLVPQGCDEGLV*VAGDGI
Trigger: TATGCCGTCTCCTGCCACCCATACCAACCCCTCATC...GCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp ACAGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGAAGTCCACTTCCAGATaGAAACTTTCTGGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: TGVHIWKQLSQVSLFSYWKSTSR*KLSGLQ
Trigger: CTGCAACCCAGAAAGTTTGCATCTGGAAGTGGACTT...CCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp CGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTAATCCTCTCTCCGAATaGCCTTTTTCCCTTCCGAAT +
Preference number: 4 (lower is better)
Translates to: RLLFSFTDSAMSNSVNSTNPLSE*PFSLPN
Trigger: ATTCGGAAGGGAAAAAGGCCATTCGGAGAGAGGATT...AGTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTTTGCAGAATCTGAGATaGTGGCCAGAAACTTGGAGT +
Preference number: 4 (lower is better)
Translates to: RLLFSFTDSAMSNSVNSTLQNLR*WPETWS
Trigger: ACTCCAAGTTTCTGGCCACCATCTCAGATTCTGCAA...AGTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTTGGCAGGCTTGGTATaGTTTTTGAAAAGGACAGAG +
Preference number: 4 (lower is better)
Translates to: PPTLLFHRQCNVQLCEFHLAGLV*FLKRTE
Trigger: CTCTGTCCTTTTCAAAAACCATACCAAGCCTGCCAA...GTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CCA 90 bp CTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCACATTAGAGTGCAGTCTGTaGGGAGGTTGGACTTCTCGG +
Preference number: 4 (lower is better)
Translates to: LLLNAFIREGTLVPQGCTLECSL*GGWTSR
Trigger: CCGAGAAGTCCAACCTCCCCACAGACTGCACTCTAA...TGTGCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
3UTR CAA 72 bp TCGATGAGCTTCCCGGTCTCCACGTATTCGCTGAACTaGATCTCATTAAACATGTCCTCAATCTTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SMSFPVSTYSLN*ISLNMSSIFSS
Trigger: AGAGGAGAAGATTGAGGACATGTTTAATGAGATCAAGTTCAGCGAATACGTGGAGACCGGGAAGCTCATCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150155.8
CDS-3UTR TCA 90 bp GCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTAGCGTGTGTGGTAACTTCAAGTaGAAGACAGACTGGCTAAAT +
Preference number: 4 (lower is better)
Translates to: ATLSLLMNTKYRFCSSSVCGNFK*KTDWLN
Trigger: ATTTAGCCAGTCTGTCTTTCACTTGAAGTTACCACA...CACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp TTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTAGCGTGGATTTTTCTTCGTGGTGGCATTaGAGAGCTTCACTTTGTAGC +
Preference number: 4 (lower is better)
Translates to: LSLLMNTKYRFCSSSVDFSSWWH*RASLCS
Trigger: GCTACAAAGTGAAGCTCTTCAATGCCACCACGAAGA...AAAATCCACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000150155.8
ENSMUST00000163092.8
CDS-3UTR GCA 90 bp CTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCACAGTGAGAGCGAAGTCTTaGCAAATACTCCCAGACCCT +
Preference number: 4 (lower is better)
Translates to: LLLNAFIREGTLVPQGCTVRAKS*QILPDP
Trigger: AGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCAC...TGTGCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR TCA 90 bp CATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGTTGCTTGGTATGGTTTTTaGAAAGGACAGAGTCCTTAT +
Preference number: 4 (lower is better)
Translates to: HLETTFPSQSLLLLGPRVAWYGF*KGQSPY
Trigger: ATAAGGACTCTGTCCTTTTCAAAAACCATACCAAGC...AACCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CCA 90 bp CGCTTCCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATCTCAGTCCTTTGGACTaGAATAATTTTCGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: RFRLLFSFTDSAMSNSVNLSPLD*NNFRLS
Trigger: AGAAAGACGAAAATTATTCCAGTCCAAAGGACTGAG...ATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGGAAGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGTAGCAGCCTGGGCTCATaGCTGTCCAGGTGGACGCCG +
Preference number: 5 (lower is better)
Translates to: SGAGPRGFWATCSLRDPGSSLGS*LSRWTP
Trigger: CGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCT...ACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGCAGTCTGTGGGGAGGTaGGACTTCTCGGTTGGCAGG +
Preference number: 5 (lower is better)
Translates to: FRSRTPWLLGHLQFAGPRQSVGR*DFSVGR
Trigger: CCTGCCAACCGAGAAGTCCAACCTCCCCACAGACTG...CCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TCTGCCATTTGCATCCTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAAGCAGGAAGAGTTCCTaGGTGAGCGGCGGGTACCAG +
Preference number: 5 (lower is better)
Translates to: SAICILQEQDPVASGPPASRKSS*VSGGYQ
Trigger: CTGGTACCCGCCGCTCACCAAGGAACTCTTCCTGCT...TGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGGATGCAAATGGCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS GCA 90 bp GAGTTCCTTGGAGCGGCGGGTACCAGATCATGCAGGTCGGGTAGTTaGCCTGGTCTGTCCGGTGAACGTCCAGGACATCCAGGTGGTCTT +
Preference number: 5 (lower is better)
Translates to: EFLGAAGTRSCRSGS*PGLSGERPGHPGGL
Trigger: AAGACCACCTGGATGTCCTGGACGTTCACCGGACAGACCAGGGCAACTACCCGACCTGCATGATCTGGTACCCGCCGCTCCAAGGAACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS GCA 90 bp GCAGATGAGCAGGAAGAGTTCCTTGGAGCGGCGGGTACCAGATCATaGAGGTCGGGTAGTTGCCCTGGTCTGTCCGGTGAACGTCCAGGA +
Preference number: 5 (lower is better)
Translates to: ADEQEEFLGAAGTRS*RSGSCPGLSGERPG
Trigger: TCCTGGACGTTCACCGGACAGACCAGGGCAACTACCCGACCTGCATGATCTGGTACCCGCCGCTCCAAGGAACTCTTCCTGCTCATCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS CCA 90 bp CTTGATCATCCCGCAGACACTCCCGACTGCGATGAGGGGTTGGTATaGGTGGCAGGAGACGGCATAGACAGCGTCCCTGGGTTCCACGAA +
Preference number: 5 (lower is better)
Translates to: LDHPADTPDCDEGLV*VAGDGIDSVPGFHE
Trigger: TTCGTGGAACCCAGGGACGCTGTCTATGCCGTCTCCTGCCACCCATACCAACCCCTCATCGCAGTCGGGAGTGTCTGCGGGATGATCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACGACTGCGATGAGGGGTaGGTATGGGTGGCAGGAGAC +
Preference number: 5 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHDCDEG*VWVAGD
Trigger: GTCTCCTGCCACCCATACCAACCCCTCATCGCAGTC...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGTTGGGACACGCTGCTTTaGGAATATTTGAAGGGCTCC +
Preference number: 5 (lower is better)
Translates to: SGAGPRGFWATCSLRDPGWDTLL*EYLKGS
Trigger: GGAGCCCTTCAAATATTCCAAAAGCAGCGTGTCCCA...ACCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGGCTTTGGATGCTGTTTaGGTGAGAGCGAAGTCTTGC +
Preference number: 5 (lower is better)
Translates to: FRSRTPWLLGHLQFAGPRALDAV*VRAKSC
Trigger: GCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGC...CCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS TCA 90 bp AGAGGGGCGGTCCTTGCAGAGGGATGCCTGGCTTCCCAGGGAGGCTaGACCCAGCCAAACCTACCGAATGATCTGTCTGTGCAACGGAAT +
Preference number: 5 (lower is better)
Translates to: RGAVLAEGCLASQGG*TQPNLPNDLSVQRN
Trigger: ATTCCGTTGCACAGACAGATCATTCGGTAGGTTTGGCTGGGTTCAGCCTCCCTGGGAAGCCAGGCATCCCTCTGCAAGGACCGCCCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170536.2
CDS GCA 90 bp CTTCTCGAAGTCCCACACCTTGATCATCCCGCAGACACTCCCGACTaGGATGAGGGGTTGGTATGGGTGGCAGGAGACGGCATAGACAGC +
Preference number: 5 (lower is better)
Translates to: LLEVPHLDHPADTPD*DEGLVWVAGDGIDS
Trigger: GCTGTCTATGCCGTCTCCTGCCACCCATACCAACCCCTCATCGCAGTCGGGAGTGTCTGCGGGATGATCAAGGTGTGGGACTTCGAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 90 bp CGCTTCTGCAGCTCTAGCGTGGATTTTACGGGGAGCACCTGCGCATaGTCAATAGGCGACCCATACGCCGGTCCAAGGAGCGTCTTTCTG +
Preference number: 5 (lower is better)
Translates to: RFCSSSVDFTGSTCA*SIGDPYAGPRSVFL
Trigger: CAGAAAGACGCTCCTTGGACCGGCGTATGGGTCGCCTATTGAGCATGCGCAGGTGCTCCCCGTAAAATCCACGCTAGAGCTGCAGAAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp GTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACAGATTTCTGGACCGTaGATGCAGGTGGCTGCAGGC +
Preference number: 5 (lower is better)
Translates to: VGVGRHTGQSVIETYHWGQISGP*MQVAAG
Trigger: GCCTGCAGCCACCTGCATCAACGGTCCAGAAATCTG...TCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGCTGTCAGGCCTGTTCTCGCTTCGCCGAACAGGAGGCTTaGGATGCTGTTTTGGTGAGA +
Preference number: 5 (lower is better)
Translates to: WLRLLQAWRSSCQACSRFAEQEA*DAVLVR
Trigger: TCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGC...GAAGCGAGAACAGGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGACATCCAGGTGGTCTTaGCAGCTCTTGACAAGATTG +
Preference number: 5 (lower is better)
Translates to: FRSRTPWLLGHLQFAGPRTSRWS*QLLTRL
Trigger: CAATCTTGTCAAGAGCTGCAAAGACCACCTGGATGT...CCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 90 bp CGGCATAGACAGCGTCCCTGGGTTCCACGAAGAGCTTCTCAAGTTTaGTGCCATCCACGGTCATGTGGTACACGGTGGCGTCAAACGTCC +
Preference number: 5 (lower is better)
Translates to: RHRQRPWVPRRASQV*CHPRSCGTRWRQTS
Trigger: GGACGTTTGACGCCACCGTGTACCACATGACCGTGGATGGCACCAAACTTGAGAAGCTCTTCGTGGAACCCAGGGACGCTGTCTATGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp GTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTGAGCAGCCAGGGAGGAGCTaGACCTGGGTGGCTCATGGC +
Preference number: 5 (lower is better)
Translates to: VIETYHWGHWQERVLRTEQPGRS*TWVAHG
Trigger: GCCATGAGCCACCCAGGTCAAGCTCCTCCCTGGCTG...CTCAGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp GGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGACACTCGAAGTCCCACACCTaGATCATCCCGCAGACACTC +
Preference number: 5 (lower is better)
Translates to: GVGRHTGQSVIETYHWGHSKSHT*IIPQTL
Trigger: GAGTGTCTGCGGGATGATCAAGGTGTGGGACTTCGA...GTGTCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGGGACCCAGGTCTCTCCACTTTCTCTaGATTCTTCTAGGGGGTTTT +
Preference number: 5 (lower is better)
Translates to: FRSRTPWLLGHLQFAGPRSLHFL*ILLGGF
Trigger: AAAACCCCCTAGAAGAATCAAGAGAAAGTGGAGAGA...CCTGGGTCCCGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TGGCTGAGGCTCCTTCAGGCCTGGCGATCCAGCTGTCAGGCCTGTTCTCGCTTCATACTCCCAGACCCTTaGTCCATTTTTGACCACCAC +
Preference number: 5 (lower is better)
Translates to: WLRLLQAWRSSCQACSRFILPDP*SIFDHH
Trigger: GTGGTGGTCAAAAATGGACAAAGGGTCTGGGAGTAT...GAAGCGAGAACAGGCCTGACAGCTGGATCGCCAGGCCTGAAGGAGCCTCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS GCA 90 bp CATAGACAGCGTCCCTGGGTTCCACGAAGAGCTTCTCAAGTTTGGTaGCATCCACGGTCATGTGGTACACGGTGGCGTCAAACGTCCCAA +
Preference number: 5 (lower is better)
Translates to: HRQRPWVPRRASQVW*HPRSCGTRWRQTSQ
Trigger: TTGGGACGTTTGACGCCACCGTGTACCACATGACCGTGGATGGCACCAAACTTGAGAAGCTCTTCGTGGAACCCAGGGACGCTGTCTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 90 bp TGGGCTCATTGCTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGATaGTGTTTTGGTGAGAGCGAAGTCTTGCCAAATACTCCCAGACCC +
Preference number: 5 (lower is better)
Translates to: WAHCCPGGRRTGGFG*CFGESEVLPNTPRP
Trigger: GGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGAGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp CACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGTCATGTGCTCCCCTTaGGTGAGGAGTAAGTTCAGG +
Preference number: 5 (lower is better)
Translates to: HTCASTHGALCAASIANDVMCSP*VRSKFR
Trigger: CCTGAACTTACTCCTCACCAAAGGGGAGCACATGAC...GTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp ACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGCCAGCTTCCCTTCCTTaGTTGCCGACAGTACTTGTG +
Preference number: 5 (lower is better)
Translates to: THVQAHTEPFVLPASPMTPASLP*LPTVLV
Trigger: CACAAGTACTGTCGGCAACAAAGGAAGGGAAGCTGG...CGTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS GCA 90 bp CGATCAAGAATCTGTCTTTCCCAAGGCTCAGCAGCCTGGGCTCATTaGTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGATGCTGTTTT +
Preference number: 5 (lower is better)
Translates to: RSRICLSQGSAAWAH*CPGGRRTGGFGCCF
Trigger: AAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTGGGAAAGACAGATTCTTGATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 90 bp GGTACACCTTGGAGTCCTCCTCCTTCTGGAATAAGGTGTCCTCTGTaGAGACAGACACCAGTGACTCCTCCGCACTCAGTCCTTTGGACT +
Preference number: 5 (lower is better)
Translates to: GTPWSPPPSGIRCPL*RQTPVTPPHSVLWT
Trigger: AGTCCAAAGGACTGAGTGCGGAGGAGTCACTGGTGTCTGTCTCCACAGAGGACACCTTATTCCAGAAGGAGGAGGACTCCAAGGTGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 90 bp GACCAGGTCATGCTCAAAGGGTACACCTTGGAGTCCTCCTCCTTCTaGAATAAGGTGTCCTCTGTGGAGACAGACACCAGTGACTCCTCC +
Preference number: 5 (lower is better)
Translates to: DQVMLKGYTLESSSF*NKVSSVETDTSDSS
Trigger: GGAGGAGTCACTGGTGTCTGTCTCCACAGAGGACACCTTATTCCAGAAGGAGGAGGACTCCAAGGTGTACCCTTTGAGCATGACCTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 90 bp GATTGTACTCGATCAAGAATCTGTCTTTCCCAAGGCTCAGCAGCCTaGGCTCATTGCTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGA +
Preference number: 5 (lower is better)
Translates to: DCTRSRICLSQGSAA*AHCCPGGRRTGGFG
Trigger: TCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTGGGAAAGACAGATTCTTGATCGAGTACAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp GTGGGGGTGGGCAGGCACACTGGACAGAGTGTGATAGAGACGTATCACTGGGGATCTTTCTTTTCCTCCTaGGCTCGTCCAGCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: VGVGRHTGQSVIETYHWGSFFSS*ARPAFV
Trigger: GACAAAAGCTGGACGAGCCAAGGAGGAAAAGAAAGA...TCCCCAGTGATACGTCTCTATCACACTCTGTCCAGTGTGCCTGCCCACCCCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp CACAGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGAGCAGCCTGGGCTCATaGCTGTCCAGGTGGACGCCG +
Preference number: 5 (lower is better)
Translates to: HRGAHLETTFPSQSLLLLSSLGS*LSRWTP
Trigger: CGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCT...CAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp TCTGCCATTTGCATCCTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCATCCACCAGGGCTGTTTaGTTTTGCTTCTCTTTCTTT +
Preference number: 5 (lower is better)
Translates to: SAICILQEQDPVASGPPASTRAV*FCFSFF
Trigger: AAAGAAAGAGAAGCAAAACAAAACAGCCCTGGTGGA...TGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGGATGCAAATGGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp GTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTTTTGCTGGGAAGTATGGTGGCCAGAAACTaGGAGTCACGGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: VMLAVMATHNCLGVLLGSMVARN*ESRVMA
Trigger: AGCCATCACCCGTGACTCCAAGTTTCTGGCCACCAT...ACTTCCCAGCAAAACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp GGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCGACTGCGATGAGGGGTaGGTATGGGTGGCAGGAGAC +
Preference number: 5 (lower is better)
Translates to: GCTFGNNFPKSVSSLTGSDCDEG*VWVAGD
Trigger: GTCTCCTGCCACCCATACCAACCCCTCATCGCAGTC...GGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS TCA 90 bp CTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGATGCTGTTTTGGTaGGAGCGAAGTCTTGCCAAATACTCCCAGACCCTTTGTCCATTT +
Preference number: 5 (lower is better)
Translates to: LSRWTPNRRLWMLFW*ERSLAKYSQTLCPF
Trigger: AAATGGACAAAGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 90 bp TGTAGTAGACAGGGAGCGAACTGTTCCAGCCAAAGGACCAGGTCATaGTCAAAGGGTACACCTTGGAGTCCTCCTCCTTCTGGAATAAGG +
Preference number: 5 (lower is better)
Translates to: CSRQGANCSSQRTRS*SKGTPWSPPPSGIR
Trigger: CCTTATTCCAGAAGGAGGAGGACTCCAAGGTGTACCCTTTGAGCATGACCTGGTCCTTTGGCTGGAACAGTTCGCTCCCTGTCTACTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS GCA 90 bp CAAGTGTGCATGCGGGCGTCTCCACTGCCAAAGTCCACTTCCAGATaGAAACTTTCTGGGTTGCAGAATCTGAGATGGTGGCCAGAAACT +
Preference number: 5 (lower is better)
Translates to: QVCMRASPLPKSTSR*KLSGLQNLRWWPET
Trigger: AGTTTCTGGCCACCATCTCAGATTCTGCAACCCAGAAAGTTTGCATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCATGCACACTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 90 bp ACCATACTCCTTGGGAAGCTCAAGTGTGCATGCGGGCGTCTCCACTaGCAAAGTCCACTTCCAGATGCAAACTTTCTGGGTTGCAGAATC +
Preference number: 5 (lower is better)
Translates to: TILLGKLKCACGRLH*QSPLPDANFLGCRI
Trigger: GATTCTGCAACCCAGAAAGTTTGCATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTTCCCAAGGAGTATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp TTTGCATCCTTCAGGAGCAGGACCCCGTGGCTTCTGGGCCACCTGCAGTTTGCGAGTCCAACCTTGTCCTaGTTAATGAACACCAAGTAT +
Preference number: 5 (lower is better)
Translates to: FASFRSRTPWLLGHLQFASPTLS*LMNTKY
Trigger: ATACTTGGTGTTCATTAACAAGGACAAGGTTGGACT...CGCAAACTGCAGGTGGCCCAGAAGCCACGGGGTCCTGCTCCTGAAGGATGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp GGGCATGGACAGAAAAGGGGACACCTCTTGGAACATGCACACACATGTGCAAGCAGGAAATCCGGGAGGTaGATCTTGTCGATGAGCTTC +
Preference number: 5 (lower is better)
Translates to: GHGQKRGHLLEHAHTCASRKSGR*ILSMSF
Trigger: GAAGCTCATCGACAAGATCAACCTCCCGGATTTCCT...GCTTGCACATGTGTGTGCATGTTCCAAGAGGTGTCCCCTTTTCTGTCCATGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp AGTGTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTCTCAAAGGGTACACCTaGGAGTCCTCCTCCTTCTGG +
Preference number: 5 (lower is better)
Translates to: SVIETYHWGHWQERVLRTLKGYT*ESSSFW
Trigger: CCAGAAGGAGGAGGACTCCAAGGTGTACCCTTTGAG...AGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp AGTGTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTGGTGAGAGCGAAGTCTaGCCAAATACTCCCAGACCC +
Preference number: 5 (lower is better)
Translates to: SVIETYHWGHWQERVLRTGESEV*PNTPRP
Trigger: GGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACC...AGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp CACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGAGCAGGAAGAGTTCCTaGGAGCGGCGGGTACCAGAT +
Preference number: 5 (lower is better)
Translates to: HIWKQLSQVSLFSYWVPGSRKSS*ERRVPD
Trigger: ATCTGGTACCCGCCGCTCCAAGGAACTCTTCCTGCT...CCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS TCA 90 bp GGGTTGCAGAATCTGAGATGGTGGCCAGAAACTTGGAGTCACGGGTaGTGGCTATTGACCTCATGCCATTACCTTCTGGACAGCTGTCAA +
Preference number: 5 (lower is better)
Translates to: GLQNLRWWPETWSHG*WLLTSCHYLLDSCQ
Trigger: TTGACAGCTGTCCAGAAGGTAATGGCATGAGGTCAATAGCCATCACCCGTGACTCCAAGTTTCTGGCCACCATCTCAGATTCTGCAACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121964.8
ENSMUST00000170536.2
CDS GCA 90 bp AGACGAGGTTATCCTGAAAACCATACTCCTTGGGAAGCTCAAGTGTaGATGCGGGCGTCTCCACTGCCAAAGTCCACTTCCAGATGCAAA +
Preference number: 5 (lower is better)
Translates to: RRGYPENHTPWEAQV*MRASPLPKSTSRCK
Trigger: TTTGCATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTTCCCAAGGAGTATGGTTTTCAGGATAACCTCGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 90 bp CACGGGGATTCCCGTGAAGGAATCCCAAATAATTATGAGGCAGTCTaGTCCTTCGTCTGCTGTGGCAATCCATCGTCTGTCTTCGCTAAC +
Preference number: 5 (lower is better)
Translates to: HGDSREGIPNNYEAV*SFVCCGNPSSVFAN
Trigger: GTTAGCGAAGACAGACGATGGATTGCCACAGCAGACGAAGGACCAGACTGCCTCATAATTATTTGGGATTCCTTCACGGGAATCCCCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp AACTGCTTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCCTCACCAACTCTTTGTaGTTGGCTGGGTTGAAGACG +
Preference number: 5 (lower is better)
Translates to: NCLGVLLGSKIVWHSQEPLTNSL*LAGLKT
Trigger: CGTCTTCAACCCAGCCAACAACAAAGAGTTGGTGAG...GGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAAGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TTGCAGGGGCAGAAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAACTCACCAACTCTTTGTaGTTGGCTGGGTTGAAGACG +
Preference number: 5 (lower is better)
Translates to: LQGQKREGCYLVLVNEHQLTNSL*LAGLKT
Trigger: CGTCTTCAACCCAGCCAACAACAAAGAGTTGGTGAG...TTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTTCTGCCCCTGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp TTAGGCATGACTGGTGATGCTTGCTGTCATGGCCACACACAACTGCTTGGGTGTGCTTCCCTTCCTTTGTaGCCGACAGTACTTGTGGTA +
Preference number: 5 (lower is better)
Translates to: LGMTGDACCHGHTQLLGCASLPL*PTVLVV
Trigger: TACCACAAGTACTGTCGGCAACAAAGGAAGGGAAGC...ACACCCAAGCAGTTGTGTGTGGCCATGACAGCAAGCATCACCAGTCATGCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp GGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCCAGGGTTCTGACCCAGCTTCCCTTCCTTaGTTGCCGACAGTACTTGTG +
Preference number: 5 (lower is better)
Translates to: GNNFPKSVSSLTGSQGSDPASLP*LPTVLV
Trigger: CACAAGTACTGTCGGCAACAAAGGAAGGGAAGCTGG...GTCAGAACCCTGGGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp GTGATAGAGACGTATCACTGGGGACACTGGCAGGAAAGAGTCCTCAGAACTGAGCTTATGGCGCCCAGTTaGAAGTTGCTGTACCAGTTG +
Preference number: 5 (lower is better)
Translates to: VIETYHWGHWQERVLRTELMAPS*KLLYQL
Trigger: CAACTGGTACAGCAACTTCAAACTGGGCGCCATAAG...CTCAGTTCTGAGGACTCTTTCCTGCCAGTGTCCCCAGTGATACGTCTCTATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp CACACATGTGCAAGCACACACGGAGCCCTTTGTGCTGCCAGCATCGCCAATGACGGCTTGGTATGGTTTTaGAAAAGGACAGAGTCCTTA +
Preference number: 5 (lower is better)
Translates to: HTCASTHGALCAASIANDGLVWF*KRTESL
Trigger: TAAGGACTCTGTCCTTTTCAAAAACCATACCAAGCC...GTCATTGGCGATGCTGGCAGCACAAAGGGCTCCGTGTGTGCTTGCACATGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp AAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGGGTGAGAGCGAAGTCTaGCCAAATACTCCCAGACCC +
Preference number: 5 (lower is better)
Translates to: KREGCYLVLVNEHQVSLLGESEV*PNTPRP
Trigger: GGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACC...CAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS TCA 90 bp TGTGGGGAGGTTGGACTTCTCGGTTGGCAGGCTTGGTATGGTTTTTaGAAAGGACAGAGTCCTTATGGCGCCCAGTTTGAAGTTGCTGTA +
Preference number: 5 (lower is better)
Translates to: CGEVGLLGWQAWYGF*KGQSPYGAQFEVAV
Trigger: TACAGCAACTTCAAACTGGGCGCCATAAGGACTCTGTCCTTTTCAAAAACCATACCAAGCCTGCCAACCGAGAAGTCCAACCTCCCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 90 bp CTGTCCGGTGAACGTCCAGGACATCCAGGTGGTCTTTGCAGCTCTTaGCAAGATTGTACTCGATCAAGAATCTGTCTTTCCCAAGGCTCA +
Preference number: 5 (lower is better)
Translates to: LSGERPGHPGGLCSS*QDCTRSRICLSQGS
Trigger: TGAGCCTTGGGAAAGACAGATTCTTGATCGAGTACAATCTTGTCAAGAGCTGCAAAGACCACCTGGATGTCCTGGACGTTCACCGGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 90 bp GAGGTTATCCTGAAAACCATACTCCTTGGGAAGCTCAAGTGTGCATaGGGGCGTCTCCACTGCCAAAGTCCACTTCCAGATGCAAACTTT +
Preference number: 5 (lower is better)
Translates to: EVILKTILLGKLKCA*GRLHCQSPLPDANF
Trigger: AAAGTTTGCATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTTCCCAAGGAGTATGGTTTTCAGGATAACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 90 bp GCCGAACAGGAGGCTTTGGATGCTGTTTTGGTGAGAGCGAAGTCTTaGCAAATACTCCCAGACCCTTTGTCCATTTTTGACCACCACCAT +
Preference number: 5 (lower is better)
Translates to: AEQEALDAVLVRAKS*QILPDPLSIFDHHH
Trigger: ATGGTGGTGGTCAAAAATGGACAAAGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 90 bp GGTTCCACGAAGAGCTTCTCAAGTTTGGTGCCATCCACGGTCATGTaGTACACGGTGGCGTCAAACGTCCCAATGATAAAATTCCTGACA +
Preference number: 5 (lower is better)
Translates to: GSTKSFSSLVPSTVM*YTVASNVPMIKFLT
Trigger: TGTCAGGAATTTTATCATTGGGACGTTTGACGCCACCGTGTACCACATGACCGTGGATGGCACCAAACTTGAGAAGCTCTTCGTGGAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp CGCTTCCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATCCTGCCTGGTCTCCATaGTATCGATACCTTGACTGC +
Preference number: 5 (lower is better)
Translates to: RFRLLFSFTDSAMSNSVNPAWSP*YRYLDC
Trigger: GCAGTCAAGGTATCGATACAATGGAGACCAGGCAGG...ATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGGAAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp CACAGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGTCGAAGTCCCACACCTaGATCATCCCGCAGACACTC +
Preference number: 5 (lower is better)
Translates to: HRGAHLETTFPSQSLLLLSKSHT*IIPQTL
Trigger: GAGTGTCTGCGGGATGATCAAGGTGTGGGACTTCGA...CAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS GCA 90 bp CGTGAAGGAATCCCAAATAATTATGAGGCAGTCTGGTCCTTCGTCTaGTGTGGCAATCCATCGTCTGTCTTCGCTAACACAGAGGCAAGA +
Preference number: 5 (lower is better)
Translates to: REGIPNNYEAVWSFV*CGNPSSVFANTEAR
Trigger: TCTTGCCTCTGTGTTAGCGAAGACAGACGATGGATTGCCACAGCAGACGAAGGACCAGACTGCCTCATAATTATTTGGGATTCCTTCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 90 bp GTGGAGACAGACACCAGTGACTCCTCCGCACTCAGTCCTTTGGACTaGAATAATTTTCGTCTTTCTTCCAGGGAGAGTCTTGCTTCATCT +
Preference number: 5 (lower is better)
Translates to: VETDTSDSSALSPLD*NNFRLSSRESLASS
Trigger: AGATGAAGCAAGACTCTCCCTGGAAGAAAGACGAAAATTATTCCAGTCCAAAGGACTGAGTGCGGAGGAGTCACTGGTGTCTGTCTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp AACTGCTTGGGTGTTTTGCTGGGAAGTAAAATAGTCTGGCACTCCCAGGAGCCCATCTGGAGTCCAACCTaGTCCTTGTTAATGAACACC +
Preference number: 5 (lower is better)
Translates to: NCLGVLLGSKIVWHSQEPIWSPT*SLLMNT
Trigger: GGTGTTCATTAACAAGGACAAGGTTGGACTCCAGAT...GGGCTCCTGGGAGTGCCAGACTATTTTACTTCCCAGCAAAACACCCAAGCAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp GTTCTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCCAGTCTGTGGGGAGGTaGGACTTCTCGGTTGGCAGG +
Preference number: 5 (lower is better)
Translates to: VLLLNAFIREGTLVPQGCQSVGR*DFSVGR
Trigger: CCTGCCAACCGAGAAGTCCAACCTCCCCACAGACTG...GCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp CAGAAGAGGGAGGGCTGCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTGCTTTGGATGCTGTTTaGGTGAGAGCGAAGTCTTGC +
Preference number: 5 (lower is better)
Translates to: QKREGCYLVLVNEHQVSLALDAV*VRAKSC
Trigger: GCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGC...AAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGCAGCCCTCCCTCTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp ACAGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGCCGAACAGGAGGCTTaGGATGCTGTTTTGGTGAGA +
Preference number: 5 (lower is better)
Translates to: TGVHIWKQLSQVSLFSYWAEQEA*DAVLVR
Trigger: TCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGC...CCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS TCA 90 bp CCTGAGTCTTGCTGTTGCTCACCAACTCTTTGTTGTTGGCTGGGTTaGAGACGAGGTTATCCTGAAAACCATACTCCTTGGGAAGCTCAA +
Preference number: 5 (lower is better)
Translates to: PESCCCSPTLCCWLG*RRGYPENHTPWEAQ
Trigger: TTGAGCTTCCCAAGGAGTATGGTTTTCAGGATAACCTCGTCTTCAACCCAGCCAACAACAAAGAGTTGGTGAGCAACAGCAAGACTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 90 bp CATTTTCTAAAGACATCGCATCAAGAATATAAACTGTCCCCTCGGTaGATCCAGCTCCAAGCAGGGCTCCTTCGGGATTGTAGGTCAGAC +
Preference number: 5 (lower is better)
Translates to: HFLKTSHQEYKLSPR*IQLQAGLLRDCRSD
Trigger: GTCTGACCTACAATCCCGAAGGAGCCCTGCTTGGAGCTGGATTCACCGAGGGGACAGTTTATATTCTTGATGCGATGTCTTTAGAAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp CGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTCATGTTTTGTGGGGGTaGCCGTCAACTGGTAAGATC +
Preference number: 5 (lower is better)
Translates to: RLLFSFTDSAMSNSVNSTHVLWG*PSTGKI
Trigger: GATCTTACCAGTTGACGGCAACCCCCACAAAACATG...AGTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS TCA 90 bp AGTCGTGTGAGAAGCAGCAGTGGGACACGCTGCTTTTGGAATATTTaGAGGGCTCCGGGCTTTCATTTTCTAAAGACATCGCATCAAGAA +
Preference number: 5 (lower is better)
Translates to: SRVRSSSGTRCFWNI*RAPGFHFLKTSHQE
Trigger: TTCTTGATGCGATGTCTTTAGAAAATGAAAGCCCGGAGCCCTTCAAATATTCCAAAAGCAGCGTGTCCCACTGCTGCTTCTCACACGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 90 bp ATTGACCTCATGCCATTACCTTCTGGACAGCTGTCAAATATGGTGTaGACGGGGATTCCCGTGAAGGAATCCCAAATAATTATGAGGCAG +
Preference number: 5 (lower is better)
Translates to: IDLMPLPSGQLSNMV*TGIPVKESQIIMRQ
Trigger: CTGCCTCATAATTATTTGGGATTCCTTCACGGGAATCCCCGTGCACACCATATTTGACAGCTGTCCAGAAGGTAATGGCATGAGGTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp CCGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTCCGCACTCAGTCCTTaGGACTGGAATAATTTTCGT +
Preference number: 5 (lower is better)
Translates to: PPTLLFHRQCNVQLCEFHSALSP*DWNNFR
Trigger: ACGAAAATTATTCCAGTCCAAAGGACTGAGTGCGGA...GTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp CTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCACAATGGTGGCCAGAAACTaGGAGTCACGGGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: LLLNAFIREGTLVPQGCTMVARN*ESRVMA
Trigger: AGCCATCACCCGTGACTCCAAGTTTCTGGCCACCAT...TGTGCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp CACAGGGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGACATCCAGGTGGTCTTaGCAGCTCTTGACAAGATTG +
Preference number: 5 (lower is better)
Translates to: HRGAHLETTFPSQSLLLLTSRWS*QLLTRL
Trigger: CAATCTTGTCAAGAGCTGCAAAGACCACCTGGATGT...CAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCCCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp CGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTCAGCTTTTGTCTCAGTaGTCTCAGTATCTTCCTCCT +
Preference number: 5 (lower is better)
Translates to: RLLFSFTDSAMSNSVNSTQLLSQ*SQYLPP
Trigger: AGGAGGAAGATACTGAGACAACTGAGACAAAAGCTG...AGTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS-3UTR CAA 90 bp TTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTAGCGTGGATTTTGCTTCCCTTCCTTTGTaGCCGACAGTACTTGTGGTA +
Preference number: 5 (lower is better)
Translates to: LSLLMNTKYRFCSSSVDFASLPL*PTVLVV
Trigger: TACCACAAGTACTGTCGGCAACAAAGGAAGGGAAGC...AAAATCCACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp GGGTGCACATTTGGAAACAACTTTCCCAAGTCAGTCTCTTCTCTTACTGGGTCCGGCTTGGTATGGTTTTaGAAAAGGACAGAGTCCTTA +
Preference number: 5 (lower is better)
Translates to: GCTFGNNFPKSVSSLTGSGLVWF*KRTESL
Trigger: TAAGGACTCTGTCCTTTTCAAAAACCATACCAAGCC...GGACCCAGTAAGAGAAGAGACTGACTTGGGAAAGTTGTTTCCAAATGTGCACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp GTTCTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCCTTATGGCGCCCAGTTaGAAGTTGCTGTACCAGTTG +
Preference number: 5 (lower is better)
Translates to: VLLLNAFIREGTLVPQGCLMAPS*KLLYQL
Trigger: CAACTGGTACAGCAACTTCAAACTGGGCGCCATAAG...GCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp CTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCACATGGGACACGCTGCTTTaGGAATATTTGAAGGGCTCC +
Preference number: 5 (lower is better)
Translates to: LLLNAFIREGTLVPQGCTWDTLL*EYLKGS
Trigger: GGAGCCCTTCAAATATTCCAAAAGCAGCGTGTCCCA...TGTGCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS TCA 90 bp AGCTTCCCTTCCTTTGTTGCCGACAGTACTTGTGGTAACTTCAAGTaGAAGACAGACTGGCTAAATTTCCCCACAAGTTTGTTGAACGTT +
Preference number: 5 (lower is better)
Translates to: SFPSFVADSTCGNFK*KTDWLNFPTSLLNV
Trigger: AACGTTCAACAAACTTGTGGGGAAATTTAGCCAGTCTGTCTTTCACTTGAAGTTACCACAAGTACTGTCGGCAACAAAGGAAGGGAAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS-3UTR CAA 90 bp GCTACCTTGTCCTTGTTAATGAACACCAAGTATCGCTTCTGCAGCTCTAGCGTGTTCCCCACAAGTTTGTaGAACGTTTTCTCTGTTAAA +
Preference number: 5 (lower is better)
Translates to: ATLSLLMNTKYRFCSSSVFPTSL*NVFSVK
Trigger: TTTAACAGAGAAAACGTTCAACAAACTTGTGGGGAA...CACGCTAGAGCTGCAGAAGCGATACTTGGTGTTCATTAACAAGGACAAGGTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp GTTCTATTATTAAATGCATTTATTAGGGAAGGGACATTAGTGCCACAGGGGTGCATACTCCCAGACCCTTaGTCCATTTTTGACCACCAC +
Preference number: 5 (lower is better)
Translates to: VLLLNAFIREGTLVPQGCILPDP*SIFDHH
Trigger: GTGGTGGTCAAAAATGGACAAAGGGTCTGGGAGTAT...GCACCCCTGTGGCACTAATGTCCCTTCCCTAATAAATGCATTTAATAATAGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS-3UTR CAA 90 bp CGCCTACTCTTCTCTTTCACAGACAGTGCAATGTCCAACTCTGTGAATTCCACTTTCCCCACAAGTTTGTaGAACGTTTTCTCTGTTAAA +
Preference number: 5 (lower is better)
Translates to: RLLFSFTDSAMSNSVNSTFPTSL*NVFSVK
Trigger: TTTAACAGAGAAAACGTTCAACAAACTTGTGGGGAA...AGTGGAATTCACAGAGTTGGACATTGCACTGTCTGTGAAAGAGAAGAGTAGGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 72 bp CCCGCAGACACTCCCGACTGCGATGAGGGGTTGGTATaGGTGGCAGGAGACGGCATAGACAGCGTCCCTGGG +
Preference number: 6 (lower is better)
Translates to: PADTPDCDEGLV*VAGDGIDSVPG
Trigger: CCCAGGGACGCTGTCTATGCCGTCTCCTGCCACCCATACCAACCCCTCATCGCAGTCGGGAGTGTCTGCGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp GTCCCACACCTTGATCATCCCGCAGACACTCCCGACTaGGATGAGGGGTTGGTATGGGTGGCAGGAGACGGC +
Preference number: 6 (lower is better)
Translates to: VPHLDHPADTPD*DEGLVWVAGDG
Trigger: GCCGTCTCCTGCCACCCATACCAACCCCTCATCGCAGTCGGGAGTGTCTGCGGGATGATCAAGGTGTGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 90 bp CCACACCTTGATCATCCCGCAGACACTCCCGACTGCGATGAGGGGTaGGTATGGGTGGCAGGAGACGGCATAGACAGCGTCCCTGGGTTC +
Preference number: 6 (lower is better)
Translates to: PHLDHPADTPDCDEG*VWVAGDGIDSVPGF
Trigger: GAACCCAGGGACGCTGTCTATGCCGTCTCCTGCCACCCATACCAACCCCTCATCGCAGTCGGGAGTGTCTGCGGGATGATCAAGGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp GATCATCCCGCAGACACTCCCGACTGCGATGAGGGGTaGGTATGGGTGGCAGGAGACGGCATAGACAGCGTC +
Preference number: 6 (lower is better)
Translates to: DHPADTPDCDEG*VWVAGDGIDSV
Trigger: GACGCTGTCTATGCCGTCTCCTGCCACCCATACCAACCCCTCATCGCAGTCGGGAGTGTCTGCGGGATGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp CAGGAAGAGTTCCTTGGAGCGGCGGGTACCAGATCATaGAGGTCGGGTAGTTGCCCTGGTCTGTCCGGTGAA +
Preference number: 6 (lower is better)
Translates to: QEEFLGAAGTRS*RSGSCPGLSGE
Trigger: TTCACCGGACAGACCAGGGCAACTACCCGACCTGCATGATCTGGTACCCGCCGCTCCAAGGAACTCTTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163092.8
CDS CCA 72 bp CCAAGGCTCAGCAGCCTGGGCTCATTGCTGTCCAGGTaGACGCCGAACAGGAGGCTTTGGATGCTGTTTTGG +
Preference number: 6 (lower is better)
Translates to: PRLSSLGSLLSR*TPNRRLWMLFW
Trigger: CCAAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp ATCTGTCTTTCCCAAGGCTCAGCAGCCTGGGCTCATTaGTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGA +
Preference number: 6 (lower is better)
Translates to: ICLSQGSAAWAH*CPGGRRTGGFG
Trigger: TCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTGGGAAAGACAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 72 bp CAGCGTCCCTGGGTTCCACGAAGAGCTTCTCAAGTTTaGTGCCATCCACGGTCATGTGGTACACGGTGGCGT +
Preference number: 6 (lower is better)
Translates to: QRPWVPRRASQV*CHPRSCGTRWR
Trigger: ACGCCACCGTGTACCACATGACCGTGGATGGCACCAAACTTGAGAAGCTCTTCGTGGAACCCAGGGACGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp ACAGCGTCCCTGGGTTCCACGAAGAGCTTCTCAAGTTaGGTGCCATCCACGGTCATGTGGTACACGGTGGCG +
Preference number: 6 (lower is better)
Translates to: TASLGSTKSFSS*VPSTVMWYTVA
Trigger: CGCCACCGTGTACCACATGACCGTGGATGGCACCAAACTTGAGAAGCTCTTCGTGGAACCCAGGGACGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp CGTCCCTGGGTTCCACGAAGAGCTTCTCAAGTTTGGTaGCATCCACGGTCATGTGGTACACGGTGGCGTCAA +
Preference number: 6 (lower is better)
Translates to: RPWVPRRASQVW*HPRSCGTRWRQ
Trigger: TTGACGCCACCGTGTACCACATGACCGTGGATGGCACCAAACTTGAGAAGCTCTTCGTGGAACCCAGGGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 72 bp GGTATGGGTGGCAGGAGACGGCATAGACAGCGTCCCTaGGTTCCACGAAGAGCTTCTCAAGTTTGGTGCCAT +
Preference number: 6 (lower is better)
Translates to: GMGGRRRHRQRP*VPRRASQVWCH
Trigger: ATGGCACCAAACTTGAGAAGCTCTTCGTGGAACCCAGGGACGCTGTCTATGCCGTCTCCTGCCACCCATACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 72 bp CGATCAAGAATCTGTCTTTCCCAAGGCTCAGCAGCCTaGGCTCATTGCTGTCCAGGTGGACGCCGAACAGGA +
Preference number: 6 (lower is better)
Translates to: RSRICLSQGSAA*AHCCPGGRRTG
Trigger: TCCTGTTCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTGGGAAAGACAGATTCTTGATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp CAGGGAGCGAACTGTTCCAGCCAAAGGACCAGGTCATaGTCAAAGGGTACACCTTGGAGTCCTCCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: QGANCSSQRTRS*SKGTPWSPPPS
Trigger: AGAAGGAGGAGGACTCCAAGGTGTACCCTTTGAGCATGACCTGGTCCTTTGGCTGGAACAGTTCGCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 72 bp TGGAGTCCTCCTCCTTCTGGAATAAGGTGTCCTCTGTaGAGACAGACACCAGTGACTCCTCCGCACTCAGTC +
Preference number: 6 (lower is better)
Translates to: WSPPPSGIRCPL*RQTPVTPPHSV
Trigger: GACTGAGTGCGGAGGAGTCACTGGTGTCTGTCTCCACAGAGGACACCTTATTCCAGAAGGAGGAGGACTCCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 72 bp CAAGAGATGATGTTAGGGTGGCCCTGCAGATGGTACTaGGTGTTCCTGACGACGTCGTACATGATGGCGGTG +
Preference number: 6 (lower is better)
Translates to: QEMMLGWPCRWY*VFLTTSYMMAV
Trigger: CACCGCCATCATGTACGACGTCGTCAGGAACACCCAGTACCATCTGCAGGGCCACCCTAACATCATCTCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 90 bp TCGATCAAGAATCTGTCTTTCCCAAGGCTCAGCAGCCTGGGCTCATaGCTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGATGCTGTTT +
Preference number: 6 (lower is better)
Translates to: SIKNLSFPRLSSLGS*LSRWTPNRRLWMLF
Trigger: AAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCAATGAGCCCAGGCTGCTGAGCCTTGGGAAAGACAGATTCTTGATCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 72 bp GACACTGGACTCCAAGCCCCTTCTCGAAGGTCCTGCTaGACAGATAGACCTTCTTCTCGAAGTCCCACACCT +
Preference number: 6 (lower is better)
Translates to: DTGLQAPSRRSC*TDRPSSRSPTP
Trigger: AGGTGTGGGACTTCGAGAAGAAGGTCTATCTGTTCAGCAGGACCTTCGAGAAGGGGCTTGGAGTCCAGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp CTTGGGAAGCTCAAGTGTGCATGCGGGCGTCTCCACTaGCAAAGTCCACTTCCAGATGCAAACTTTCTGGGT +
Preference number: 6 (lower is better)
Translates to: LGKLKCACGRLH*QSPLPDANFLG
Trigger: ACCCAGAAAGTTTGCATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTTCCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 72 bp TCTTCGCTAACACAGAGGCAAGAGATGATGTTAGGGTaGCCCTGCAGATGGTACTGGGTGTTCCTGACGACG +
Preference number: 6 (lower is better)
Translates to: SSLTQRQEMMLG*PCRWYWVFLTT
Trigger: CGTCGTCAGGAACACCCAGTACCATCTGCAGGGCCACCCTAACATCATCTCTTGCCTCTGTGTTAGCGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 72 bp CAGGTGGACGCCGAACAGGAGGCTTTGGATGCTGTTTaGGTGAGAGCGAAGTCTTGCCAAATACTCCCAGAC +
Preference number: 6 (lower is better)
Translates to: QVDAEQEALDAV*VRAKSCQILPD
Trigger: GTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 90 bp ATTGCTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGATGCTGTTTaGGTGAGAGCGAAGTCTTGCCAAATACTCCCAGACCCTTTGTCC +
Preference number: 6 (lower is better)
Translates to: IAVQVDAEQEALDAV*VRAKSCQILPDPLS
Trigger: GGACAAAGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 72 bp CTGGCTTACTTCTGGACTATCAGCCAGGGAGGAGCTTaGCCTGGGTGGCTCATGGCTGATGACAATATTGTC +
Preference number: 6 (lower is better)
Translates to: LAYFWTISQGGA*PGWLMADDNIV
Trigger: GACAATATTGTCATCAGCCATGAGCCACCCAGGTCAAGCTCCTCCCTGGCTGATAGTCCAGAAGTAAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS TCA 72 bp GTTGACGTCGGCTGTCGCCATGTAATTGGAGTCGTGTaGGAAGCAGCAGTGGGACACGCTGCTTTTGGAATA +
Preference number: 6 (lower is better)
Translates to: VDVGCRHVIGVV*EAAVGHAAFGI
Trigger: TATTCCAAAAGCAGCGTGTCCCACTGCTGCTTCTCACACGACTCCAATTACATGGCGACAGCCGACGTCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 72 bp TGGACGCCGAACAGGAGGCTTTGGATGCTGTTTTGGTaGGAGCGAAGTCTTGCCAAATACTCCCAGACCCTT +
Preference number: 6 (lower is better)
Translates to: WTPNRRLWMLFW*ERSLAKYSQTL
Trigger: AAGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp ATGCGGGCGTCTCCACTGCCAAAGTCCACTTCCAGATaGAAACTTTCTGGGTTGCAGAATCTGAGATGGTGG +
Preference number: 6 (lower is better)
Translates to: MRASPLPKSTSR*KLSGLQNLRWW
Trigger: CCACCATCTCAGATTCTGCAACCCAGAAAGTTTGCATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp CTGAAAACCATACTCCTTGGGAAGCTCAAGTGTGCATaGGGGCGTCTCCACTGCCAAAGTCCACTTCCAGAT +
Preference number: 6 (lower is better)
Translates to: LKTILLGKLKCA*GRLHCQSPLPD
Trigger: ATCTGGAAGTGGACTTTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTTCCCAAGGAGTATGGTTTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp TATCCTGAAAACCATACTCCTTGGGAAGCTCAAGTGTaGATGCGGGCGTCTCCACTGCCAAAGTCCACTTCC +
Preference number: 6 (lower is better)
Translates to: YPENHTPWEAQV*MRASPLPKSTS
Trigger: GGAAGTGGACTTTGGCAGTGGAGACGCCCGCATGCACACTTGAGCTTCCCAAGGAGTATGGTTTTCAGGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp TGCTGTCCAGGTGGACGCCGAACAGGAGGCTTTGGATaGTGTTTTGGTGAGAGCGAAGTCTTGCCAAATACT +
Preference number: 6 (lower is better)
Translates to: CCPGGRRTGGFG*CFGESEVLPNT
Trigger: AGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTCCTGTTCGGCGTCCACCTGGACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 90 bp GTGAGCCCTCAGTTAGGCTCTGCTGCAGAGCATCTTCTTCAAAACTaGGATTATATTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: VSPQLGSAAEHLLQN*DYIPPSPPPPPPPP
Trigger: AGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAATATAATCCAAGTTTTGAAGAAGATGCTCTGCAGCAGAGCCTAACTGAGGGCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS TCA 72 bp GGTGGCCAGAAACTTGGAGTCACGGGTGATGGCTATTaGCCTCATGCCATTACCTTCTGGACAGCTGTCAAA +
Preference number: 6 (lower is better)
Translates to: GGQKLGVTGDGY*PHAITFWTAVK
Trigger: TTTGACAGCTGTCCAGAAGGTAATGGCATGAGGTCAATAGCCATCACCCGTGACTCCAAGTTTCTGGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121964.8
ENSMUST00000170536.2
CDS CCA 72 bp ATGCTCAAAGGGTACACCTTGGAGTCCTCCTCCTTCTaGAATAAGGTGTCCTCTGTGGAGACAGACACCAGT +
Preference number: 6 (lower is better)
Translates to: MLKGYTLESSSF*NKVSSVETDTS
Trigger: ACTGGTGTCTGTCTCCACAGAGGACACCTTATTCCAGAAGGAGGAGGACTCCAAGGTGTACCCTTTGAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 72 bp TTCTGGGTTGCAGAATCTGAGATGGTGGCCAGAAACTaGGAGTCACGGGTGATGGCTATTGACCTCATGCCA +
Preference number: 6 (lower is better)
Translates to: FWVAESEMVARN*ESRVMAIDLMP
Trigger: TGGCATGAGGTCAATAGCCATCACCCGTGACTCCAAGTTTCTGGCCACCATCTCAGATTCTGCAACCCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121964.8
ENSMUST00000170536.2
CDS TCA 72 bp AATCTGAGATGGTGGCCAGAAACTTGGAGTCACGGGTaGTGGCTATTGACCTCATGCCATTACCTTCTGGAC +
Preference number: 6 (lower is better)
Translates to: NLRWWPETWSHG*WLLTSCHYLLD
Trigger: GTCCAGAAGGTAATGGCATGAGGTCAATAGCCATCACCCGTGACTCCAAGTTTCTGGCCACCATCTCAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121964.8
ENSMUST00000170536.2
CDS TCA 72 bp CCACTTCCAGATGCAAACTTTCTGGGTTGCAGAATCTaGGATGGTGGCCAGAAACTTGGAGTCACGGGTGAT +
Preference number: 6 (lower is better)
Translates to: PLPDANFLGCRI*DGGQKLGVTGD
Trigger: ATCACCCGTGACTCCAAGTTTCTGGCCACCATCTCAGATTCTGCAACCCAGAAAGTTTGCATCTGGAAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 72 bp AAGACATCGCATCAAGAATATAAACTGTCCCCTCGGTaGATCCAGCTCCAAGCAGGGCTCCTTCGGGATTGT +
Preference number: 6 (lower is better)
Translates to: KTSHQEYKLSPR*IQLQAGLLRDC
Trigger: ACAATCCCGAAGGAGCCCTGCTTGGAGCTGGATTCACCGAGGGGACAGTTTATATTCTTGATGCGATGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 72 bp TCCCGTGAAGGAATCCCAAATAATTATGAGGCAGTCTaGTCCTTCGTCTGCTGTGGCAATCCATCGTCTGTC +
Preference number: 6 (lower is better)
Translates to: SREGIPNNYEAV*SFVCCGNPSSV
Trigger: GACAGACGATGGATTGCCACAGCAGACGAAGGACCAGACTGCCTCATAATTATTTGGGATTCCTTCACGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 72 bp GAGACAGACACCAGTGACTCCTCCGCACTCAGTCCTTaGGACTGGAATAATTTTCGTCTTTCTTCCAGGGAG +
Preference number: 6 (lower is better)
Translates to: ETDTSDSSALSP*DWNNFRLSSRE
Trigger: CTCCCTGGAAGAAAGACGAAAATTATTCCAGTCCAAAGGACTGAGTGCGGAGGAGTCACTGGTGTCTGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 72 bp GTTTTTGAAAAGGACAGAGTCCTTATGGCGCCCAGTTaGAAGTTGCTGTACCAGTTGACCACGGAGAGGGTG +
Preference number: 6 (lower is better)
Translates to: VFEKDRVLMAPS*KLLYQLTTERV
Trigger: CACCCTCTCCGTGGTCAACTGGTACAGCAACTTCAAACTGGGCGCCATAAGGACTCTGTCCTTTTCAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp GAGTCGTGTGAGAAGCAGCAGTGGGACACGCTGCTTTaGGAATATTTGAAGGGCTCCGGGCTTTCATTTTCT +
Preference number: 6 (lower is better)
Translates to: ESCEKQQWDTLL*EYLKGSGLSFS
Trigger: AGAAAATGAAAGCCCGGAGCCCTTCAAATATTCCAAAAGCAGCGTGTCCCACTGCTGCTTCTCACACGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp GTGAGAGCGAAGTCTTGCCAAATACTCCCAGACCCTTaGTCCATTTTTGACCACCACCATATAGACGGCCAC +
Preference number: 6 (lower is better)
Translates to: VRAKSCQILPDP*SIFDHHHIDGH
Trigger: GTGGCCGTCTATATGGTGGTGGTCAAAAATGGACAAAGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 72 bp AAGAGCTTCTCAAGTTTGGTGCCATCCACGGTCATGTaGTACACGGTGGCGTCAAACGTCCCAATGATAAAA +
Preference number: 6 (lower is better)
Translates to: KSFSSLVPSTVM*YTVASNVPMIK
Trigger: TTTTATCATTGGGACGTTTGACGCCACCGTGTACCACATGACCGTGGATGGCACCAAACTTGAGAAGCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp GCTTCTCTTTCTTTTCCTCCTTGGCTCGTCCAGCTTTaGTCTCAGTTGTCTCAGTATCTTCCTCCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: ASLSFPPWLVQL*SQLSQYLPPPP
Trigger: AGGAGGAGGAGGAAGATACTGAGACAACTGAGACAAAAGCTGGACGAGCCAAGGAGGAAAAGAAAGAGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 72 bp GAGCTTGACCTGGGTGGCTCATGGCTGATGACAATATaGTCCACCAGGGCTGTTTTGTTTTGCTTCTCTTTC +
Preference number: 6 (lower is better)
Translates to: ELDLGGSWLMTI*STRAVLFCFSF
Trigger: GAAAGAGAAGCAAAACAAAACAGCCCTGGTGGACAATATTGTCATCAGCCATGAGCCACCCAGGTCAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 90 bp ATGCAAACTTTCTGGGTTGCAGAATCTGAGATGGTGGCCAGAAACTaGGAGTCACGGGTGATGGCTATTGACCTCATGCCATTACCTTCT +
Preference number: 6 (lower is better)
Translates to: MQTFWVAESEMVARN*ESRVMAIDLMPLPS
Trigger: AGAAGGTAATGGCATGAGGTCAATAGCCATCACCCGTGACTCCAAGTTTCTGGCCACCATCTCAGATTCTGCAACCCAGAAAGTTTGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121964.8
ENSMUST00000170536.2
CDS CAA 90 bp AAGATGGGTAGTGTATGTCCCAGACAACCAGCTTCCCTTCCTTTGTaGCCGACAGTACTTGTGGTAACTTCAAGTGAAAGACAGACTGGC +
Preference number: 6 (lower is better)
Translates to: KMGSVCPRQPASLPL*PTVLVVTSSERQTG
Trigger: GCCAGTCTGTCTTTCACTTGAAGTTACCACAAGTACTGTCGGCAACAAAGGAAGGGAAGCTGGTTGTCTGGGACATACACTACCCATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 90 bp GAGTCGTGTGAGAAGCAGCAGTGGGACACGCTGCTTTTGGAATATTaGAAGGGCTCCGGGCTTTCATTTTCTAAAGACATCGCATCAAGA +
Preference number: 6 (lower is better)
Translates to: ESCEKQQWDTLLLEY*KGSGLSFSKDIASR
Trigger: TCTTGATGCGATGTCTTTAGAAAATGAAAGCCCGGAGCCCTTCAAATATTCCAAAAGCAGCGTGTCCCACTGCTGCTTCTCACACGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 90 bp GCTGTTTTGGTGAGAGCGAAGTCTTGCCAAATACTCCCAGACCCTTaGTCCATTTTTGACCACCACCATATAGACGGCCACAGTGAAGTT +
Preference number: 6 (lower is better)
Translates to: AVLVRAKSCQILPDP*SIFDHHHIDGHSEV
Trigger: AACTTCACTGTGGCCGTCTATATGGTGGTGGTCAAAAATGGACAAAGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 90 bp TGGAAGATGGGTAGTGTATGTCCCAGACAACCAGCTTCCCTTCCTTaGTTGCCGACAGTACTTGTGGTAACTTCAAGTGAAAGACAGACT +
Preference number: 6 (lower is better)
Translates to: WKMGSVCPRQPASLP*LPTVLVVTSSERQT
Trigger: AGTCTGTCTTTCACTTGAAGTTACCACAAGTACTGTCGGCAACAAAGGAAGGGAAGCTGGTTGTCTGGGACATACACTACCCATCTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 72 bp TGCTGTTGCTCACCAACTCTTTGTTGTTGGCTGGGTTaGAGACGAGGTTATCCTGAAAACCATACTCCTTGG +
Preference number: 6 (lower is better)
Translates to: CCCSPTLCCWLG*RRGYPENHTPW
Trigger: CCAAGGAGTATGGTTTTCAGGATAACCTCGTCTTCAACCCAGCCAACAACAAAGAGTTGGTGAGCAACAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp TCCTCCCATGACAGTGAGCCCTCAGTTAGGCTCTGCTaGAGAGCATCTTCTTCAAAACTTGGATTATATTCC +
Preference number: 6 (lower is better)
Translates to: SSHDSEPSVRLC*RASSSKLGLYS
Trigger: GGAATATAATCCAAGTTTTGAAGAAGATGCTCTGCAGCAGAGCCTAACTGAGGGCTCACTGTCATGGGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS GCA 72 bp ATCCCAAATAATTATGAGGCAGTCTGGTCCTTCGTCTaGTGTGGCAATCCATCGTCTGTCTTCGCTAACACA +
Preference number: 6 (lower is better)
Translates to: IPNNYEAVWSFV*CGNPSSVFANT
Trigger: TGTGTTAGCGAAGACAGACGATGGATTGCCACAGCAGACGAAGGACCAGACTGCCTCATAATTATTTGGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS GCA 72 bp GAGGCTTTGGATGCTGTTTTGGTGAGAGCGAAGTCTTaGCAAATACTCCCAGACCCTTTGTCCATTTTTGAC +
Preference number: 6 (lower is better)
Translates to: EALDAVLVRAKS*QILPDPLSIFD
Trigger: GTCAAAAATGGACAAAGGGTCTGGGAGTATTTGGCAAGACTTCGCTCTCACCAAAACAGCATCCAAAGCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp CAGTTAGGCTCTGCTGCAGAGCATCTTCTTCAAAACTaGGATTATATTCCTCCTTCTCCTCCTCCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: QLGSAAEHLLQN*DYIPPSPPPPP
Trigger: AGGAGGAGGAGGAGGAGAAGGAGGAATATAATCCAAGTTTTGAAGAAGATGCTCTGCAGCAGAGCCTAACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CAA 72 bp GGTAGTGTATGTCCCAGACAACCAGCTTCCCTTCCTTaGTTGCCGACAGTACTTGTGGTAACTTCAAGTGAA +
Preference number: 6 (lower is better)
Translates to: GSVCPRQPASLP*LPTVLVVTSSE
Trigger: TTCACTTGAAGTTACCACAAGTACTGTCGGCAACAAAGGAAGGGAAGCTGGTTGTCTGGGACATACACTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp AGGACATCCAGGTGGTCTTTGCAGCTCTTGACAAGATaGTACTCGATCAAGAATCTGTCTTTCCCAAGGCTC +
Preference number: 6 (lower is better)
Translates to: RTSRWSLQLLTR*YSIKNLSFPRL
Trigger: GAGCCTTGGGAAAGACAGATTCTTGATCGAGTACAATCTTGTCAAGAGCTGCAAAGACCACCTGGATGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS TCA 72 bp TCTTTGTTGTTGGCTGGGTTGAAGACGAGGTTATCCTaGAAACCATACTCCTTGGGAAGCTCAAGTGTGCAT +
Preference number: 6 (lower is better)
Translates to: SLLLAGLKTRLS*KPYSLGSSSVH
Trigger: ATGCACACTTGAGCTTCCCAAGGAGTATGGTTTTCAGGATAACCTCGTCTTCAACCCAGCCAACAACAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS GCA 72 bp ATGCCATTACCTTCTGGACAGCTGTCAAATATGGTGTaGACGGGGATTCCCGTGAAGGAATCCCAAATAATT +
Preference number: 6 (lower is better)
Translates to: MPLPSGQLSNMV*TGIPVKESQII
Trigger: AATTATTTGGGATTCCTTCACGGGAATCCCCGTGCACACCATATTTGACAGCTGTCCAGAAGGTAATGGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 72 bp TCATCTTTTCCTTGGGCTAAAATGTCTTCAGGCTTCTaGCTGGCTTCCTCGGTATCATCCACTTTCATACTG +
Preference number: 6 (lower is better)
Translates to: SSFPWAKMSSGF*LASSVSSTFIL
Trigger: CAGTATGAAAGTGGATGATACCGAGGAAGCCAGCCAGAAGCCTGAAGACATTTTAGCCCAAGGAAAAGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS CCA 72 bp AGTCTTGCTGTTGCTCACCAACTCTTTGTTGTTGGCTaGGTTGAAGACGAGGTTATCCTGAAAACCATACTC +
Preference number: 6 (lower is better)
Translates to: SLAVAHQLFVVG*VEDEVILKTIL
Trigger: GAGTATGGTTTTCAGGATAACCTCGTCTTCAACCCAGCCAACAACAAAGAGTTGGTGAGCAACAGCAAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CAA 72 bp AGTGTATGTCCCAGACAACCAGCTTCCCTTCCTTTGTaGCCGACAGTACTTGTGGTAACTTCAAGTGAAAGA +
Preference number: 6 (lower is better)
Translates to: SVCPRQPASLPL*PTVLVVTSSER
Trigger: TCTTTCACTTGAAGTTACCACAAGTACTGTCGGCAACAAAGGAAGGGAAGCTGGTTGTCTGGGACATACACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2
CDS CCA 72 bp CTTTTCCTTGGGCTAAAATGTCTTCAGGCTTCTGGCTaGCTTCCTCGGTATCATCCACTTTCATACTGTTAT +
Preference number: 6 (lower is better)
Translates to: LFLGLKCLQASG*LPRYHPLSYCY
Trigger: ATAACAGTATGAAAGTGGATGATACCGAGGAAGCCAGCCAGAAGCCTGAAGACATTTTAGCCCAAGGAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121964.8
CDS TCA 72 bp TCCTTTGTTGCCGACAGTACTTGTGGTAACTTCAAGTaGAAGACAGACTGGCTAAATTTCCCCACAAGTTTG +
Preference number: 6 (lower is better)
Translates to: SFVADSTCGNFK*KTDWLNFPTSL
Trigger: CAAACTTGTGGGGAAATTTAGCCAGTCTGTCTTTCACTTGAAGTTACCACAAGTACTGTCGGCAACAAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000121964.8
ENSMUST00000163092.8
ENSMUST00000170536.2